BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00017403
         (1367 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF,...   645   0.0  
ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF,...   645   0.0  
ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF,...   616   e-173
ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF,...   611   e-172
emb|CDP06761.1| unnamed protein product [Coffea canephora]            557   e-156
ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF,...   551   e-154
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   547   e-153
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   547   e-153
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              547   e-153
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   545   e-152
ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF,...   542   e-151
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   542   e-151
gb|AKC88770.1| sigma factor [Francoa sonchifolia]                     541   e-151
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   538   e-150
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,...   538   e-150
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   530   e-147
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   530   e-147
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   530   e-147
ref|XP_010325979.1| PREDICTED: RNA polymerase sigma factor sigF,...   530   e-147
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   530   e-147

>ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Sesamum indicum] gi|747093636|ref|XP_011094633.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X2 [Sesamum indicum]
          Length = 496

 Score =  645 bits (1664), Expect = 0.0
 Identities = 324/424 (76%), Positives = 371/424 (87%), Gaps = 1/424 (0%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLASVP 1176
            + SIS+K+E    +EAD VVALAREAFSA KEA +I  DA+L G  +DDS S+R L  VP
Sbjct: 73   MESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARLDDSSSIRSLTGVP 132

Query: 1175 ERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGPE 999
             +RTVRSTRL+ERQ KRR VPKPK+E QETNH RKP S RK D G+DPNDPLRLFLRGPE
Sbjct: 133  AQRTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEGFDPNDPLRLFLRGPE 192

Query: 998  TTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIHI 819
            T +LL + EESELI+KIQE M+LQE+++R   QFSREPTLVEWAAA GISCQ+L+SQIH 
Sbjct: 193  TRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAGISCQALQSQIHC 252

Query: 818  GNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATYA 639
            G+SSRQKLI AN R+VVHIAKQYQGRGL+LQDLLQEGS+GLM+SVEKFKP AGCRFATYA
Sbjct: 253  GDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFATYA 312

Query: 638  YWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGISV 459
            YWWIRQSIRKALFQHSRTIRLPENVY LL+++YEAKK+CIQQGN  P++EDIA  AG+SV
Sbjct: 313  YWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPTKEDIAACAGMSV 372

Query: 458  EKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSVL 279
            E +E+LLYTAR+PLS+Q+PVW DQ TT+QEITADTTIEVPDVGV KQLMR+H+RNLLSVL
Sbjct: 373  EGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQLMRQHIRNLLSVL 432

Query: 278  NPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAYA 99
            +PRERKIIR+RFGI  G+QKSLSEIGA FGLSKERVRQLESRALYKLKQCL S GL AYA
Sbjct: 433  SPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLGSHGLAAYA 492

Query: 98   DMLV 87
            +M++
Sbjct: 493  NMII 496


>ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 561

 Score =  645 bits (1664), Expect = 0.0
 Identities = 324/424 (76%), Positives = 371/424 (87%), Gaps = 1/424 (0%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLASVP 1176
            + SIS+K+E    +EAD VVALAREAFSA KEA +I  DA+L G  +DDS S+R L  VP
Sbjct: 138  MESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARLDDSSSIRSLTGVP 197

Query: 1175 ERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGPE 999
             +RTVRSTRL+ERQ KRR VPKPK+E QETNH RKP S RK D G+DPNDPLRLFLRGPE
Sbjct: 198  AQRTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEGFDPNDPLRLFLRGPE 257

Query: 998  TTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIHI 819
            T +LL + EESELI+KIQE M+LQE+++R   QFSREPTLVEWAAA GISCQ+L+SQIH 
Sbjct: 258  TRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAGISCQALQSQIHC 317

Query: 818  GNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATYA 639
            G+SSRQKLI AN R+VVHIAKQYQGRGL+LQDLLQEGS+GLM+SVEKFKP AGCRFATYA
Sbjct: 318  GDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFATYA 377

Query: 638  YWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGISV 459
            YWWIRQSIRKALFQHSRTIRLPENVY LL+++YEAKK+CIQQGN  P++EDIA  AG+SV
Sbjct: 378  YWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPTKEDIAACAGMSV 437

Query: 458  EKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSVL 279
            E +E+LLYTAR+PLS+Q+PVW DQ TT+QEITADTTIEVPDVGV KQLMR+H+RNLLSVL
Sbjct: 438  EGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQLMRQHIRNLLSVL 497

Query: 278  NPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAYA 99
            +PRERKIIR+RFGI  G+QKSLSEIGA FGLSKERVRQLESRALYKLKQCL S GL AYA
Sbjct: 498  SPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLGSHGLAAYA 557

Query: 98   DMLV 87
            +M++
Sbjct: 558  NMII 561


>ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Erythranthe guttatus] gi|604329105|gb|EYU34473.1|
            hypothetical protein MIMGU_mgv1a003862mg [Erythranthe
            guttata]
          Length = 559

 Score =  616 bits (1589), Expect = e-173
 Identities = 310/421 (73%), Positives = 359/421 (85%)
 Frame = -1

Query: 1349 SISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLASVPER 1170
            S+ S +EN TG EA+HV+ALAREAFSA KEA SI+ DA+L     D+S S R L   P +
Sbjct: 143  SLPSTAENVTGAEANHVLALAREAFSACKEAASIAEDARLY----DNSSSTRSLVGSPVQ 198

Query: 1169 RTVRSTRLLERQSKRRVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGPETTE 990
            R VRS R LERQ+KRR PKP++E QE NH RK   H+K   GYDPNDPLRLFL GPETT+
Sbjct: 199  RIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQ 258

Query: 989  LLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIHIGNS 810
            LL+A EE++LI KIQE MKLQEVR+R   QFSREPTLVEWAAA+GIS Q+L+ Q++ GN 
Sbjct: 259  LLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWAAAVGISTQALQFQVNCGNF 318

Query: 809  SRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATYAYWW 630
            SR+KLI+AN RLVV+IAKQYQGRGLNLQDLLQ GS+GLMKSVEKFKP  GCRFATYAYWW
Sbjct: 319  SREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWW 378

Query: 629  IRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGISVEKM 450
            IRQSIRK+LFQHSRTIRLPENVY LL+K+YEAKK CI+QGN  P++EDIA  AG+SVEK+
Sbjct: 379  IRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGNHQPTKEDIAAAAGLSVEKL 438

Query: 449  EKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSVLNPR 270
            ++LLYT+RVPLSMQ+PVWMDQ TT+QEITADT +E PDVG +KQ+MR+H RNLLSVLNPR
Sbjct: 439  DRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGASKQIMRQHTRNLLSVLNPR 498

Query: 269  ERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 90
            ERKIIR+RFGI DG+QKSLS+IGA FGLSKER+RQ+ESRALYKLKQCLSS GL AYA+ML
Sbjct: 499  ERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRALYKLKQCLSSHGLSAYAEML 558

Query: 89   V 87
            V
Sbjct: 559  V 559


>ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Erythranthe guttatus]
          Length = 558

 Score =  611 bits (1576), Expect = e-172
 Identities = 308/421 (73%), Positives = 357/421 (84%)
 Frame = -1

Query: 1349 SISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLASVPER 1170
            S+ S +EN TG EA+HV+ALAREAFSA KEA SI+ DA+L      D+ S   L   P +
Sbjct: 143  SLPSTAENVTGAEANHVLALAREAFSACKEAASIAEDARLY-----DNSSSTSLVGSPVQ 197

Query: 1169 RTVRSTRLLERQSKRRVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGPETTE 990
            R VRS R LERQ+KRR PKP++E QE NH RK   H+K   GYDPNDPLRLFL GPETT+
Sbjct: 198  RIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQ 257

Query: 989  LLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIHIGNS 810
            LL+A EE++LI KIQE MKLQEVR+R   QFSREPTLVEWAAA+GIS Q+L+ Q++ GN 
Sbjct: 258  LLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWAAAVGISTQALQFQVNCGNF 317

Query: 809  SRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATYAYWW 630
            SR+KLI+AN RLVV+IAKQYQGRGLNLQDLLQ GS+GLMKSVEKFKP  GCRFATYAYWW
Sbjct: 318  SREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWW 377

Query: 629  IRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGISVEKM 450
            IRQSIRK+LFQHSRTIRLPENVY LL+K+YEAKK CI+QGN  P++EDIA  AG+SVEK+
Sbjct: 378  IRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGNHQPTKEDIAAAAGLSVEKL 437

Query: 449  EKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSVLNPR 270
            ++LLYT+RVPLSMQ+PVWMDQ TT+QEITADT +E PDVG +KQ+MR+H RNLLSVLNPR
Sbjct: 438  DRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGASKQIMRQHTRNLLSVLNPR 497

Query: 269  ERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 90
            ERKIIR+RFGI DG+QKSLS+IGA FGLSKER+RQ+ESRALYKLKQCLSS GL AYA+ML
Sbjct: 498  ERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRALYKLKQCLSSHGLSAYAEML 557

Query: 89   V 87
            V
Sbjct: 558  V 558


>emb|CDP06761.1| unnamed protein product [Coffea canephora]
          Length = 556

 Score =  557 bits (1436), Expect = e-156
 Identities = 285/426 (66%), Positives = 354/426 (83%), Gaps = 5/426 (1%)
 Frame = -1

Query: 1349 SISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFS---VRGLASV 1179
            S+ S  ++ T +EA++VVALA+ A SAS+EA  ++ ++KL G  VDD+ S   +  L  +
Sbjct: 135  SVPSIPDDFTDVEAENVVALAKNALSASREAALLAENSKLFGASVDDTLSPSLLYALTDI 194

Query: 1178 P-ERRTVRSTRLLERQ-SKRRVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRG 1005
            P E++TV STRLL+RQ  KRRVPKPKVE ++T    +P   RK    +D  DPLR+FL G
Sbjct: 195  PLEKKTVHSTRLLQRQPKKRRVPKPKVEVEDTRPPVRPNLQRK---AFDLIDPLRVFLSG 251

Query: 1004 PETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQI 825
            PET +LL   EESELI KIQ+ MK +EV++R  +QF+REPTLVEWA A G+SC++L++Q+
Sbjct: 252  PET-KLLTVDEESELIGKIQDWMKQEEVKSRLQSQFNREPTLVEWAEAAGLSCRALQTQL 310

Query: 824  HIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFAT 645
            H GN SR+KLI+AN R+VVHIA+QY GRGL+LQDLLQEGS+GLM+S+EKFKP  GCRFAT
Sbjct: 311  HSGNRSREKLIYANHRMVVHIARQYMGRGLSLQDLLQEGSMGLMRSIEKFKPQVGCRFAT 370

Query: 644  YAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGI 465
            YAYWWIRQ+IRKA+FQHSRTIRLP+NVYGLL+K+ EAKK+CIQQG  +P++E+IA  AGI
Sbjct: 371  YAYWWIRQAIRKAIFQHSRTIRLPDNVYGLLSKVKEAKKLCIQQGIHSPTKEEIASCAGI 430

Query: 464  SVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLS 285
            +VEK+EKLL+TAR+PLSMQQPVWMDQ TT+QE+TADT IE  D+ V+KQLMR H+RNLL 
Sbjct: 431  TVEKLEKLLFTARMPLSMQQPVWMDQDTTFQEVTADTAIEASDLSVSKQLMRIHIRNLLR 490

Query: 284  VLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEA 105
            +LNP+ERKIIR+RFGI DGKQKSLSEIGA FGLSKERVRQLE+RALYKLKQCL+SQGL A
Sbjct: 491  ILNPKERKIIRLRFGIEDGKQKSLSEIGAVFGLSKERVRQLETRALYKLKQCLNSQGLNA 550

Query: 104  YADMLV 87
            YADML+
Sbjct: 551  YADMLL 556


>ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 544

 Score =  551 bits (1419), Expect = e-154
 Identities = 281/427 (65%), Positives = 342/427 (80%), Gaps = 7/427 (1%)
 Frame = -1

Query: 1349 SISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLAS---- 1182
            S+S K E     E + VVALAR+A  AS+EA  ++ D+KLL  + DDS     L++    
Sbjct: 117  SLSDKGEKLMNFEPESVVALARKALLASREAALLAEDSKLLETNFDDSIFPNLLSTNLTD 176

Query: 1181 --VPERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFL 1011
              + +++TVRSTR LER+SKRR VP PK + QETN   +P   R++    D NDPLR+FL
Sbjct: 177  DKLKDQKTVRSTRFLERRSKRRGVPTPKHQVQETNRSERPDVRRRVKESIDLNDPLRMFL 236

Query: 1010 RGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKS 831
             GPET +LL   EESELI+KIQ +MKLQEV+ R   QF REPTL+EWA A G++ + L+S
Sbjct: 237  WGPETKQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQS 296

Query: 830  QIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRF 651
            Q+  G SSR KLI+ANLR+VVHIAKQYQGRGL+LQDLLQEGS+GLMKSVEKFKP AGCRF
Sbjct: 297  QLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRF 356

Query: 650  ATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRA 471
             TYAYWWIRQ +RK +FQHSRTIRLPENVY LL+K+ +AKK+CIQQGN++P+REDIA  A
Sbjct: 357  PTYAYWWIRQGVRKTIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNRHPTREDIASCA 416

Query: 470  GISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNL 291
            G+SVE+++ LL  AR PLSMQQ VW DQ TT+QEITAD+ IE P++ V+KQLMRRH+RNL
Sbjct: 417  GMSVERLQSLLSAARTPLSMQQSVWTDQDTTFQEITADSAIEAPELSVSKQLMRRHIRNL 476

Query: 290  LSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGL 111
            L+VLNP+ERKIIR+RFGIGDGK+KSLSEIGA FGLSKERVRQLESRALYKLK+ LSS GL
Sbjct: 477  LNVLNPKERKIIRLRFGIGDGKRKSLSEIGAVFGLSKERVRQLESRALYKLKKNLSSHGL 536

Query: 110  EAYADML 90
            +AY+D+L
Sbjct: 537  DAYSDLL 543


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  547 bits (1410), Expect = e-153
 Identities = 278/428 (64%), Positives = 347/428 (81%), Gaps = 5/428 (1%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVR-GLASV 1179
            + SI++  ENS  ++   V+ALA++A SASK+A+S+  +AKLLG  ++DS S   G  S 
Sbjct: 141  MKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISS 200

Query: 1178 P----ERRTVRSTRLLERQSKRRVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFL 1011
            P    E +TVRSTRLLER+SK+R   PKV   E +  R+    RK++ GYDP DPLRLFL
Sbjct: 201  PNLPLEEKTVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFL 259

Query: 1010 RGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKS 831
             GPET +LL A EESELI++IQE M+L+EV+ R  +   REPT+VEWA A+G+SCQ L+S
Sbjct: 260  WGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQS 319

Query: 830  QIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRF 651
            Q+H GN SRQKLI+ANLR+VVHIAKQYQGRGLNLQDLLQEGS+GLM SVEKFKP+AGCRF
Sbjct: 320  QLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRF 379

Query: 650  ATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRA 471
            A+YAYWWIRQ++RKA+FQHSRTIRLPEN+Y LL K+ EAK++ IQ+G+ +P++E+IA R 
Sbjct: 380  ASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERV 439

Query: 470  GISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNL 291
            GI++EK+++LL   R+PLSMQQPVW DQ TT+QE+TADT IE+PDV V KQLMR+HVRNL
Sbjct: 440  GITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNL 499

Query: 290  LSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGL 111
            L VL P+ER+IIR+RFGIGDG  ++LSEIG  FG SKERVRQLE RAL+KLKQCLSS GL
Sbjct: 500  LHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGL 559

Query: 110  EAYADMLV 87
            E+Y D+LV
Sbjct: 560  ESYTDLLV 567


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  547 bits (1410), Expect = e-153
 Identities = 277/433 (63%), Positives = 344/433 (79%), Gaps = 10/433 (2%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVR-GLAS- 1182
            L S+++ S     +E  +VVALA++A SAS+EA S++ D++ +G   D+S S+  G  S 
Sbjct: 141  LESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSLGLGYTSL 200

Query: 1181 ----VPERRTVRSTRLLERQSKR----RVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDP 1026
                V E +TVRSTR+LER+ KR    +VPK K+   E+N        +K+  G++PNDP
Sbjct: 201  DNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGHESNSFTSSDVPKKISEGFNPNDP 260

Query: 1025 LRLFLRGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISC 846
            LRLFL GPET +LL A EE+ELI ++Q+  KL+EV++R   QF REPTL+EWA A+GISC
Sbjct: 261  LRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISC 320

Query: 845  QSLKSQIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPH 666
            Q LKSQ+  G SSR+KLI+ANLR+VVHIAKQYQGRGL LQDL+QEGS+GLMKSVEKFKP 
Sbjct: 321  QILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQ 380

Query: 665  AGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSRED 486
            AGCRFATYAYWWIRQ++RKA+FQHSRTIRLPENVY LL K+ EAKK CIQ+GN NP++E+
Sbjct: 381  AGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEE 440

Query: 485  IAVRAGISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRR 306
            +A+R GI+VEK+EKLLY  R+PLSMQQPVW DQ TT+QE+TADT +E+PDV V KQLMR+
Sbjct: 441  LAIRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQ 500

Query: 305  HVRNLLSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCL 126
            HVR+LLS+LN RER+IIR+R+GI DGKQ+SLSEIG  FGLSKERVRQLESRA  KL+Q L
Sbjct: 501  HVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSL 560

Query: 125  SSQGLEAYADMLV 87
             SQGL AY  +LV
Sbjct: 561  GSQGLGAYGPLLV 573


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  547 bits (1410), Expect = e-153
 Identities = 278/428 (64%), Positives = 347/428 (81%), Gaps = 5/428 (1%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVR-GLASV 1179
            + SI++  ENS  ++   V+ALA++A SASK+A+S+  +AKLLG  ++DS S   G  S 
Sbjct: 135  MKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISS 194

Query: 1178 P----ERRTVRSTRLLERQSKRRVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFL 1011
            P    E +TVRSTRLLER+SK+R   PKV   E +  R+    RK++ GYDP DPLRLFL
Sbjct: 195  PNLPLEEKTVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFL 253

Query: 1010 RGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKS 831
             GPET +LL A EESELI++IQE M+L+EV+ R  +   REPT+VEWA A+G+SCQ L+S
Sbjct: 254  WGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQS 313

Query: 830  QIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRF 651
            Q+H GN SRQKLI+ANLR+VVHIAKQYQGRGLNLQDLLQEGS+GLM SVEKFKP+AGCRF
Sbjct: 314  QLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRF 373

Query: 650  ATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRA 471
            A+YAYWWIRQ++RKA+FQHSRTIRLPEN+Y LL K+ EAK++ IQ+G+ +P++E+IA R 
Sbjct: 374  ASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERV 433

Query: 470  GISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNL 291
            GI++EK+++LL   R+PLSMQQPVW DQ TT+QE+TADT IE+PDV V KQLMR+HVRNL
Sbjct: 434  GITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNL 493

Query: 290  LSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGL 111
            L VL P+ER+IIR+RFGIGDG  ++LSEIG  FG SKERVRQLE RAL+KLKQCLSS GL
Sbjct: 494  LHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGL 553

Query: 110  EAYADMLV 87
            E+Y D+LV
Sbjct: 554  ESYTDLLV 561


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  545 bits (1405), Expect = e-152
 Identities = 277/429 (64%), Positives = 341/429 (79%), Gaps = 6/429 (1%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLAS-- 1182
            L S+++ S     +E  +VVALA++A SAS+EA S++ D++ +G   DD      LA+  
Sbjct: 141  LESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDD-LGYTSLANWI 199

Query: 1181 VPERRTVRSTRLLERQSKR----RVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLF 1014
            V E +TVRSTR+LER+ KR    +VPK KV   E+N        +K+  G++PNDPLRLF
Sbjct: 200  VEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLF 259

Query: 1013 LRGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLK 834
            L GPET +LL A EE+ELI ++Q+  KL+EV++R   QF REPTL+EWA A+GISCQ LK
Sbjct: 260  LWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILK 319

Query: 833  SQIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCR 654
            SQ+  G SSR+KLI+ANLR+VVHIAKQYQGRGL LQDL+QEGS+GLMKSVEKFKP AGCR
Sbjct: 320  SQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCR 379

Query: 653  FATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVR 474
            FATYAYWWIRQ++RKA+FQHSRTIRLPENVY LL K+ EAKK CIQ+GN NP++E++A R
Sbjct: 380  FATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARR 439

Query: 473  AGISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRN 294
             GI+VEK+EKLLY  R+PLSMQQPVW DQ TT+QE+TADT +E+PDV V KQLMR+HVR+
Sbjct: 440  VGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRH 499

Query: 293  LLSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQG 114
            LLS+LN RER+IIR+R+GI DGKQ+SLSEIG  FGLSKERVRQLESRA  KL+Q L SQG
Sbjct: 500  LLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQG 559

Query: 113  LEAYADMLV 87
            L AY  +LV
Sbjct: 560  LGAYGPLLV 568


>ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nicotiana sylvestris]
          Length = 545

 Score =  542 bits (1397), Expect = e-151
 Identities = 278/427 (65%), Positives = 338/427 (79%), Gaps = 7/427 (1%)
 Frame = -1

Query: 1349 SISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLAS---- 1182
            S+S K E     E  +VVALAR+A  AS+EA  ++ D+KLLG + DDS     L++    
Sbjct: 118  SLSDKGEKLMNFEPHNVVALARKALLASREAALLAEDSKLLGTNFDDSIFPNLLSTNLTD 177

Query: 1181 --VPERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFL 1011
              + ++R  RSTRLLER+SK+R  P  K + QETN   +P   R+++   D NDPLR+FL
Sbjct: 178  DKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVNESIDLNDPLRMFL 237

Query: 1010 RGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKS 831
             GPET +LL   EESELI+KIQ +MKLQEV+ R   QF REPTL+EWA A G++ + L+S
Sbjct: 238  WGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQS 297

Query: 830  QIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRF 651
            Q+  G SSR KLI+ANLR+VVHIAKQYQGRGL+LQDLLQEGS+GLMKSVEKFKP AGCRF
Sbjct: 298  QLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRF 357

Query: 650  ATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRA 471
             TYAYWWIRQ +RKA+FQHSRTIRLPENVY LL+K+ +AKK+CIQQGN +P+REDIA  A
Sbjct: 358  PTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCA 417

Query: 470  GISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNL 291
            G+SVE+++ LL  AR PLSMQQ VW DQ  T+QEITAD  IE P++ V+KQLMRRHVRNL
Sbjct: 418  GMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNL 477

Query: 290  LSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGL 111
            L+VL+P+ERKIIR+RFGIGDG++KSLSEIGA FGLSKERVRQLESRALY+LKQ LSS GL
Sbjct: 478  LNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGL 537

Query: 110  EAYADML 90
            +AY D+L
Sbjct: 538  DAYNDLL 544


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
          Length = 572

 Score =  542 bits (1397), Expect = e-151
 Identities = 278/427 (65%), Positives = 338/427 (79%), Gaps = 7/427 (1%)
 Frame = -1

Query: 1349 SISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLAS---- 1182
            S+S K E     E  +VVALAR+A  AS+EA  ++ D+KLLG + DDS     L++    
Sbjct: 145  SLSDKGEKLMNFEPHNVVALARKALLASREAALLAEDSKLLGTNFDDSIFPNLLSTNLTD 204

Query: 1181 --VPERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFL 1011
              + ++R  RSTRLLER+SK+R  P  K + QETN   +P   R+++   D NDPLR+FL
Sbjct: 205  DKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVNESIDLNDPLRMFL 264

Query: 1010 RGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKS 831
             GPET +LL   EESELI+KIQ +MKLQEV+ R   QF REPTL+EWA A G++ + L+S
Sbjct: 265  WGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQS 324

Query: 830  QIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRF 651
            Q+  G SSR KLI+ANLR+VVHIAKQYQGRGL+LQDLLQEGS+GLMKSVEKFKP AGCRF
Sbjct: 325  QLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRF 384

Query: 650  ATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRA 471
             TYAYWWIRQ +RKA+FQHSRTIRLPENVY LL+K+ +AKK+CIQQGN +P+REDIA  A
Sbjct: 385  PTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCA 444

Query: 470  GISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNL 291
            G+SVE+++ LL  AR PLSMQQ VW DQ  T+QEITAD  IE P++ V+KQLMRRHVRNL
Sbjct: 445  GMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNL 504

Query: 290  LSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGL 111
            L+VL+P+ERKIIR+RFGIGDG++KSLSEIGA FGLSKERVRQLESRALY+LKQ LSS GL
Sbjct: 505  LNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGL 564

Query: 110  EAYADML 90
            +AY D+L
Sbjct: 565  DAYNDLL 571


>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
          Length = 549

 Score =  541 bits (1394), Expect = e-151
 Identities = 280/425 (65%), Positives = 336/425 (79%), Gaps = 6/425 (1%)
 Frame = -1

Query: 1343 SSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDD----SFSVRGLASVP 1176
            ++  E S G E+    ALA ++ SASK+A  + N++KL  V+ D     S     L SVP
Sbjct: 127  TTDGEKSAGTESCLAAALAMKSLSASKQAAPLLNESKLARVNGDGLPAPSLDPASLVSVP 186

Query: 1175 --ERRTVRSTRLLERQSKRRVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGP 1002
              + R VRSTRLLER+SK+RVPK  V   ET H R+    RK   G+DPNDPLR+FL GP
Sbjct: 187  LDKVRIVRSTRLLERRSKKRVPK--VGVHETFHSRRTDIKRKSSEGFDPNDPLRMFLWGP 244

Query: 1001 ETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIH 822
            ET +LL A EE ELI  IQ+ MKL+EV++R  +QF  EPTL+EWA A GISC+ L+SQ+ 
Sbjct: 245  ETKQLLTAKEEFELIDHIQDMMKLEEVKSRLLSQFGHEPTLIEWAEAAGISCRVLQSQLR 304

Query: 821  IGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATY 642
              N SR+KLI+ANLR+VVHIAKQY G+GL+  DLLQEGS+GLMKSVEKFKP AGCRFATY
Sbjct: 305  TANKSREKLINANLRMVVHIAKQYLGKGLSFPDLLQEGSMGLMKSVEKFKPQAGCRFATY 364

Query: 641  AYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGIS 462
            AYWWIRQ++RKA+FQHSRTIRLPENVY LL K+ EAKK CIQ+GN  P++E++A R GI+
Sbjct: 365  AYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHRPTKEELARRVGIT 424

Query: 461  VEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSV 282
            VEK+EKLLYT R+PLSMQQPVW  Q TT+QEI ADT IE+PD+ V KQ+MR+HVRNLLS+
Sbjct: 425  VEKLEKLLYTTRMPLSMQQPVWAGQDTTFQEIIADTEIEIPDISVGKQMMRQHVRNLLSI 484

Query: 281  LNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAY 102
            L+P+ER+IIR+RFGI DGKQKSLSEIGA FGLSKERVRQLESRALY+LKQCLSSQGL AY
Sbjct: 485  LSPKERRIIRLRFGIEDGKQKSLSEIGAVFGLSKERVRQLESRALYRLKQCLSSQGLGAY 544

Query: 101  ADMLV 87
             D+LV
Sbjct: 545  TDLLV 549


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  538 bits (1386), Expect = e-150
 Identities = 278/426 (65%), Positives = 337/426 (79%), Gaps = 6/426 (1%)
 Frame = -1

Query: 1346 ISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLAS--VPE 1173
            I++ S     ++    VALA++A SASKEA+S ++ +K +G   DDS S+ GL +  V +
Sbjct: 149  ITTASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSI-GLDNWLVED 207

Query: 1172 RRTVRSTRLLERQSKR----RVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRG 1005
             +TVRSTRLLER+ KR    RV K KV   ETN        RK++ G++ NDPLRLFL G
Sbjct: 208  EKTVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGFNQNDPLRLFLWG 267

Query: 1004 PETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQI 825
            PET +LL A EE+ELI ++Q+  KL+EV+ R  +QF REPTLVEWA A+GISCQ LKSQ+
Sbjct: 268  PETKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEAVGISCQILKSQL 327

Query: 824  HIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFAT 645
              G SSR+KLI+ANLR+VVHIAKQYQGRGL LQDL+QEGS+GLMKSVEKFKP AGCRFAT
Sbjct: 328  RSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFAT 387

Query: 644  YAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGI 465
            YAYWWIRQ++RKA+FQHSRTIRLPENVY LL K+ EAKK CIQ+GN NP++E++A R GI
Sbjct: 388  YAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGI 447

Query: 464  SVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLS 285
            +VEK++KLLY+ R+PLSMQQPVW DQ +T+QEITADT  E+P V V KQLMR+HVR+LL 
Sbjct: 448  TVEKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEKQLMRQHVRHLLG 507

Query: 284  VLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEA 105
            +LN RER+IIR+RFGI DGKQ+SLSEIG  FGLSKERVRQLESRA  KLKQ L SQGL A
Sbjct: 508  ILNLRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLGA 567

Query: 104  YADMLV 87
            Y  +LV
Sbjct: 568  YGPLLV 573


>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Pyrus x bretschneideri]
          Length = 610

 Score =  538 bits (1386), Expect = e-150
 Identities = 278/426 (65%), Positives = 337/426 (79%), Gaps = 6/426 (1%)
 Frame = -1

Query: 1346 ISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLAS--VPE 1173
            I++ S     ++    VALA++A SASKEA+S ++ +K +G   DDS S+ GL +  V +
Sbjct: 186  ITTASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSI-GLDNWLVED 244

Query: 1172 RRTVRSTRLLERQSKR----RVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRG 1005
             +TVRSTRLLER+ KR    RV K KV   ETN        RK++ G++ NDPLRLFL G
Sbjct: 245  EKTVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGFNQNDPLRLFLWG 304

Query: 1004 PETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQI 825
            PET +LL A EE+ELI ++Q+  KL+EV+ R  +QF REPTLVEWA A+GISCQ LKSQ+
Sbjct: 305  PETKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEAVGISCQILKSQL 364

Query: 824  HIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFAT 645
              G SSR+KLI+ANLR+VVHIAKQYQGRGL LQDL+QEGS+GLMKSVEKFKP AGCRFAT
Sbjct: 365  RSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFAT 424

Query: 644  YAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGI 465
            YAYWWIRQ++RKA+FQHSRTIRLPENVY LL K+ EAKK CIQ+GN NP++E++A R GI
Sbjct: 425  YAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGI 484

Query: 464  SVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLS 285
            +VEK++KLLY+ R+PLSMQQPVW DQ +T+QEITADT  E+P V V KQLMR+HVR+LL 
Sbjct: 485  TVEKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEKQLMRQHVRHLLG 544

Query: 284  VLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEA 105
            +LN RER+IIR+RFGI DGKQ+SLSEIG  FGLSKERVRQLESRA  KLKQ L SQGL A
Sbjct: 545  ILNLRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLGA 604

Query: 104  YADMLV 87
            Y  +LV
Sbjct: 605  YGPLLV 610


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  530 bits (1365), Expect = e-147
 Identities = 265/425 (62%), Positives = 337/425 (79%), Gaps = 2/425 (0%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLA-SV 1179
            + S+S+ +E S   E    VALAR+A SASKEA S++ + KL G    D      L   +
Sbjct: 137  MQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPL 196

Query: 1178 PERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGP 1002
             E +TVRST+ LER+SK+R V KPKV   ET + RK    +KL  G+D NDPLRLFL GP
Sbjct: 197  EEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGP 256

Query: 1001 ETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIH 822
            ET +LL A EE ELI +IQ+ ++L++ +++  +QF REPTL+EWA AIG+SC+ LKS++H
Sbjct: 257  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 316

Query: 821  IGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATY 642
             GNSSR+KLI+ANLRLVVH+AKQYQGRG+ L DLLQEGS+GLMKSVEKFKP AGCRFA+Y
Sbjct: 317  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 376

Query: 641  AYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGIS 462
            AYWW+RQ+IRKA+FQHSRTIRLPEN+Y LL+++ EAK++ IQ+GN +P +ED+A R GI+
Sbjct: 377  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 436

Query: 461  VEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSV 282
            VEK+E+L++  R+PLSMQQPVW DQ TT+QEITADT +E+PD+ V KQLMR+HVRNLL++
Sbjct: 437  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 496

Query: 281  LNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAY 102
            LNP+ER I+R+RFGI DGK KSLSE+G  FGLSKERVRQLESRALY+LKQ L  +    Y
Sbjct: 497  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 556

Query: 101  ADMLV 87
            AD+L+
Sbjct: 557  ADLLI 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  530 bits (1365), Expect = e-147
 Identities = 265/425 (62%), Positives = 337/425 (79%), Gaps = 2/425 (0%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLA-SV 1179
            + S+S+ +E S   E    VALAR+A SASKEA S++ + KL G    D      L   +
Sbjct: 145  MQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPL 204

Query: 1178 PERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGP 1002
             E +TVRST+ LER+SK+R V KPKV   ET + RK    +KL  G+D NDPLRLFL GP
Sbjct: 205  EEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGP 264

Query: 1001 ETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIH 822
            ET +LL A EE ELI +IQ+ ++L++ +++  +QF REPTL+EWA AIG+SC+ LKS++H
Sbjct: 265  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 324

Query: 821  IGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATY 642
             GNSSR+KLI+ANLRLVVH+AKQYQGRG+ L DLLQEGS+GLMKSVEKFKP AGCRFA+Y
Sbjct: 325  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384

Query: 641  AYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGIS 462
            AYWW+RQ+IRKA+FQHSRTIRLPEN+Y LL+++ EAK++ IQ+GN +P +ED+A R GI+
Sbjct: 385  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 444

Query: 461  VEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSV 282
            VEK+E+L++  R+PLSMQQPVW DQ TT+QEITADT +E+PD+ V KQLMR+HVRNLL++
Sbjct: 445  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 504

Query: 281  LNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAY 102
            LNP+ER I+R+RFGI DGK KSLSE+G  FGLSKERVRQLESRALY+LKQ L  +    Y
Sbjct: 505  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 564

Query: 101  ADMLV 87
            AD+L+
Sbjct: 565  ADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  530 bits (1365), Expect = e-147
 Identities = 265/425 (62%), Positives = 337/425 (79%), Gaps = 2/425 (0%)
 Frame = -1

Query: 1355 LASISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLA-SV 1179
            + S+S+ +E S   E    VALAR+A SASKEA S++ + KL G    D      L   +
Sbjct: 146  MQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPL 205

Query: 1178 PERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLRGP 1002
             E +TVRST+ LER+SK+R V KPKV   ET + RK    +KL  G+D NDPLRLFL GP
Sbjct: 206  EEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGP 265

Query: 1001 ETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQIH 822
            ET +LL A EE ELI +IQ+ ++L++ +++  +QF REPTL+EWA AIG+SC+ LKS++H
Sbjct: 266  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 325

Query: 821  IGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFATY 642
             GNSSR+KLI+ANLRLVVH+AKQYQGRG+ L DLLQEGS+GLMKSVEKFKP AGCRFA+Y
Sbjct: 326  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 385

Query: 641  AYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAGIS 462
            AYWW+RQ+IRKA+FQHSRTIRLPEN+Y LL+++ EAK++ IQ+GN +P +ED+A R GI+
Sbjct: 386  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 445

Query: 461  VEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLLSV 282
            VEK+E+L++  R+PLSMQQPVW DQ TT+QEITADT +E+PD+ V KQLMR+HVRNLL++
Sbjct: 446  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 505

Query: 281  LNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLEAY 102
            LNP+ER I+R+RFGI DGK KSLSE+G  FGLSKERVRQLESRALY+LKQ L  +    Y
Sbjct: 506  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 565

Query: 101  ADMLV 87
            AD+L+
Sbjct: 566  ADLLI 570


>ref|XP_010325979.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 534

 Score =  530 bits (1364), Expect = e-147
 Identities = 278/427 (65%), Positives = 338/427 (79%), Gaps = 8/427 (1%)
 Frame = -1

Query: 1346 ISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSVRGLAS----- 1182
            + SK +     E   VVALAR+A  ASKEA  ++ D+KLL    DDS     L++     
Sbjct: 111  LHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKLL----DDSHFPNFLSTHLVDD 166

Query: 1181 -VPERRTVRSTRLLERQSKRR-VPKPKVEFQETNHHR-KPGSHRKLDNGYDPNDPLRLFL 1011
             + E+RTVRSTR +ERQS++R  PKP  E QETN+   +P   RK++   D NDPLR+FL
Sbjct: 167  KLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESIDLNDPLRMFL 226

Query: 1010 RGPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKS 831
             GPET +LL A EESELI+KIQ SMKLQEV+ +   QF+REPT +EWA A GI+ + LKS
Sbjct: 227  WGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEAAGITSRELKS 286

Query: 830  QIHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRF 651
            Q+  G SSR+KLI+ANLR+VVHIAKQYQGRGLNLQDLLQEGS+GLMKSVEKFKP AGCRF
Sbjct: 287  QLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRF 346

Query: 650  ATYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRA 471
             TYAYWWIRQS+RKA+FQHSRTIRLPENVY LL+K+ +AK+ CI+QGN++P++EDIA  A
Sbjct: 347  PTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRHPTKEDIASCA 406

Query: 470  GISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNL 291
            G+SVE+++ LL   R PLSMQQ VW DQ TT+QEITAD  IE P++ V+KQLMRRH+R L
Sbjct: 407  GMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHIRGL 466

Query: 290  LSVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGL 111
            L+VL+P+ERKIIR+RFGIGDGK KSLSEIGA FGLSKERVRQLE+RALYKLKQ L+  GL
Sbjct: 467  LNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYKLKQNLNKHGL 526

Query: 110  EAYADML 90
            +AY+D+L
Sbjct: 527  DAYSDLL 533


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  530 bits (1364), Expect = e-147
 Identities = 276/427 (64%), Positives = 335/427 (78%), Gaps = 7/427 (1%)
 Frame = -1

Query: 1346 ISSKSENSTGLEADHVVALAREAFSASKEAMSISNDAKLLGVHVDDSFSV-RGLAS--VP 1176
            I++ S     ++    VALA++A SASKEA+S + D+K +G   D   +V  GL +  V 
Sbjct: 148  ITTASSKHMDIKPSDAVALAKKALSASKEAVSFAEDSKSMG---DXLMTVSEGLDNWLVE 204

Query: 1175 ERRTVRSTRLLERQ----SKRRVPKPKVEFQETNHHRKPGSHRKLDNGYDPNDPLRLFLR 1008
            + +TVRS RLLER+     K+RV K KV   ETN        +K++ G +PNDPLRLFL 
Sbjct: 205  DEKTVRSARLLERRRRRLKKKRVSKSKVLIHETNGPTSSDVRKKINEGLNPNDPLRLFLW 264

Query: 1007 GPETTELLNATEESELIMKIQESMKLQEVRTRFHAQFSREPTLVEWAAAIGISCQSLKSQ 828
            GPET +LL A EE+ELI ++Q+  KL+EV++R  +QF REPTLVEWA A+GISCQ LKSQ
Sbjct: 265  GPETKQLLTAKEEAELIAQVQDLFKLEEVKSRLQSQFGREPTLVEWAEAVGISCQILKSQ 324

Query: 827  IHIGNSSRQKLIHANLRLVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPHAGCRFA 648
            +  G SSR+KLI+ANLR+VVHIAKQYQGRGL LQDL+QEGS+GLMKSVEKFKP AGCRFA
Sbjct: 325  LRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFA 384

Query: 647  TYAYWWIRQSIRKALFQHSRTIRLPENVYGLLTKIYEAKKICIQQGNQNPSREDIAVRAG 468
            TYAYWWIRQ++RKA+FQHSRTIRLPENVY LL K+ EAKK CIQ+GN NP++E++A R G
Sbjct: 385  TYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVG 444

Query: 467  ISVEKMEKLLYTARVPLSMQQPVWMDQSTTYQEITADTTIEVPDVGVTKQLMRRHVRNLL 288
            I+VEK++KLLY+ R+PLSMQQPVW DQ TT+QEITADT  E+P V V KQLMR+HVR+LL
Sbjct: 445  ITVEKLQKLLYSTRMPLSMQQPVWADQDTTFQEITADTGTEIPHVSVEKQLMRQHVRHLL 504

Query: 287  SVLNPRERKIIRMRFGIGDGKQKSLSEIGADFGLSKERVRQLESRALYKLKQCLSSQGLE 108
             +LN RER+IIR+RFGI DGKQ+SLSEIG  FGLSKERVRQLESRA  KLKQ L SQGL 
Sbjct: 505  GILNLRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLG 564

Query: 107  AYADMLV 87
            AY  +LV
Sbjct: 565  AYGPLLV 571