BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00005801
         (447 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012841243.1| PREDICTED: DNA-directed RNA polymerases II a...   247   3e-63
ref|XP_011097502.1| PREDICTED: DNA-directed RNA polymerases II a...   237   2e-60
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases II a...   233   6e-59
ref|XP_010107375.1| DNA-directed RNA polymerases I, II, and III ...   231   1e-58
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr...   230   4e-58
gb|KDO66461.1| hypothetical protein CISIN_1g030833mg [Citrus sin...   229   8e-58
ref|XP_011014255.1| PREDICTED: DNA-directed RNA polymerases II a...   227   2e-57
ref|XP_010274103.1| PREDICTED: DNA-directed RNA polymerases II a...   227   3e-57
gb|EPS66115.1| hypothetical protein M569_08662, partial [Genlise...   227   3e-57
ref|XP_012477196.1| PREDICTED: DNA-directed RNA polymerases II a...   226   4e-57
ref|XP_008451219.1| PREDICTED: DNA-directed RNA polymerases II a...   226   4e-57
ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II a...   226   4e-57
ref|XP_012080620.1| PREDICTED: DNA-directed RNA polymerases II a...   226   5e-57
ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit famil...   226   5e-57
gb|KJB27153.1| hypothetical protein B456_004G280900 [Gossypium r...   225   9e-57
ref|XP_009775519.1| PREDICTED: DNA-directed RNA polymerases II a...   225   9e-57
ref|XP_009605258.1| PREDICTED: DNA-directed RNA polymerases II a...   225   9e-57
ref|XP_012076737.1| PREDICTED: DNA-directed RNA polymerases II a...   225   9e-57
ref|XP_006381734.1| DNA-directed RNA polymerase family protein [...   225   1e-56
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases II a...   224   2e-56

>ref|XP_012841243.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Erythranthe guttatus] gi|848881798|ref|XP_012841244.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A [Erythranthe guttatus]
           gi|604328677|gb|EYU34199.1| hypothetical protein
           MIMGU_mgv1a013932mg [Erythranthe guttata]
          Length = 206

 Score =  247 bits (630), Expect = 3e-63
 Identities = 127/166 (76%), Positives = 137/166 (82%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MVLS+EEITRL R+RK VMQML+DRGY+VGDFEI+MTKYQFLQKYGENMKREDLV+NK +
Sbjct: 1   MVLSDEEITRLVRVRKNVMQMLKDRGYMVGDFEIDMTKYQFLQKYGENMKREDLVINKGL 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RNNSS+QIYIFFPEE KVGVKTMKTYTNRMKEEGV                        K
Sbjct: 61  RNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKEEGVHRAVLIVQQNLTPFARTCISEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAE+L+NIKEHVLVPEHQVLT EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAEMLINIKEHVLVPEHQVLTPEEKKTLLERYTVKETQL 166


>ref|XP_011097502.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Sesamum indicum] gi|747046072|ref|XP_011097515.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A [Sesamum indicum]
          Length = 206

 Score =  237 bits (605), Expect = 2e-60
 Identities = 124/166 (74%), Positives = 134/166 (80%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MV+SEEEITRL RIRKTVMQML+DRGY+VG FEI+M K+QF+QKYGENMKREDLV+ K M
Sbjct: 1   MVMSEEEITRLHRIRKTVMQMLKDRGYMVGAFEIDMPKHQFIQKYGENMKREDLVIQKGM 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
             NSS+QIY+FFPEEQKVGVKTMKTYTNRMKEEGV                        K
Sbjct: 61  GGNSSDQIYVFFPEEQKVGVKTMKTYTNRMKEEGVHRAILVVQQNLTPFARTCISEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVP+HQVLT EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPQHQVLTPEEKKTLLERYTVKETQL 166


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Vitis
           vinifera] gi|225445172|ref|XP_002284110.1| PREDICTED:
           DNA-directed RNA polymerases II and IV subunit 5A [Vitis
           vinifera]
          Length = 206

 Score =  233 bits (593), Expect = 6e-59
 Identities = 122/166 (73%), Positives = 132/166 (79%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M  SEEEI+RLFRIRKTVMQML+DRGY VGDFEI MTK+QF+ K+GENMKREDLV+NK  
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           R +SS+QIY+FFPEEQKVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVPEHQVLT+EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQL 166


>ref|XP_010107375.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
           notabilis] gi|587928674|gb|EXC15864.1| DNA-directed RNA
           polymerases I, II, and III subunit RPABC1 [Morus
           notabilis]
          Length = 253

 Score =  231 bits (590), Expect = 1e-58
 Identities = 121/166 (72%), Positives = 131/166 (78%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MVLSE+EITRLFRIR+TVMQMLRDR Y+VGDFE+ MTK QF  KYGENMKREDL++NK+ 
Sbjct: 1   MVLSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSR 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN+S +QIY+FFPEEQKVGVKTMKTY NRMK E V                        K
Sbjct: 61  RNDSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVPEHQVLT EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQL 166


>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
           gi|567918420|ref|XP_006451216.1| hypothetical protein
           CICLE_v10009504mg [Citrus clementina]
           gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X1
           [Citrus sinensis] gi|568843558|ref|XP_006475671.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like isoform X2 [Citrus sinensis]
           gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X3
           [Citrus sinensis] gi|557554441|gb|ESR64455.1|
           hypothetical protein CICLE_v10009504mg [Citrus
           clementina] gi|557554442|gb|ESR64456.1| hypothetical
           protein CICLE_v10009504mg [Citrus clementina]
          Length = 206

 Score =  230 bits (586), Expect = 4e-58
 Identities = 120/166 (72%), Positives = 132/166 (79%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M LS+EEI RLFRIR+TVMQMLRDRGY VGDFEI M+K QF+ K+GENMKREDLV+NK +
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN+SS+QIY+FFP+EQKVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVPEHQVLT EEKKTLL+RYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQL 166


>gb|KDO66461.1| hypothetical protein CISIN_1g030833mg [Citrus sinensis]
           gi|641847583|gb|KDO66462.1| hypothetical protein
           CISIN_1g030833mg [Citrus sinensis]
          Length = 170

 Score =  229 bits (583), Expect = 8e-58
 Identities = 119/166 (71%), Positives = 132/166 (79%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M LS+EEI RLFRIR+TVMQMLRDRGY VGDFEI M+K QF+ K+GENMKREDLV+NK +
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN+SS+QIY+FFP+EQKVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVPEHQVLT EEKKTLL+RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166


>ref|XP_011014255.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Populus euphratica]
          Length = 206

 Score =  227 bits (579), Expect = 2e-57
 Identities = 120/166 (72%), Positives = 129/166 (77%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M L+EEEI RLFRIRKTVMQML+DRGY VGDFEI+MT+ QF  KYG NMKREDLV+NK  
Sbjct: 1   MTLTEEEIKRLFRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN+SS+QIY+FFPEE KVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVPEHQVL+ EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQL 166


>ref|XP_010274103.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Nelumbo nucifera] gi|720057870|ref|XP_010274104.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A [Nelumbo nucifera]
          Length = 206

 Score =  227 bits (578), Expect = 3e-57
 Identities = 117/166 (70%), Positives = 133/166 (80%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M  SE+EITRLFRIR+TV+QML+DRGY+VGDFE+ MT+ QF+ KYGEN+KREDLV+NK  
Sbjct: 1   MSSSEDEITRLFRIRRTVIQMLKDRGYLVGDFELNMTRSQFVSKYGENVKREDLVINKAK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN+SS+QI++FFPEEQKVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDSSDQIFVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTAFAKTCINEIAAK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVPEHQVLT+EEKKTLLERYT+KETQL
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQL 166


>gb|EPS66115.1| hypothetical protein M569_08662, partial [Genlisea aurea]
          Length = 208

 Score =  227 bits (578), Expect = 3e-57
 Identities = 114/168 (67%), Positives = 133/168 (79%), Gaps = 21/168 (12%)
 Frame = -2

Query: 443 KMVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKN 264
           +M+LSEE+ITRL+RIRKT+MQML+DRGY+VGDFEIEMTK QF+QKYGENMKRED  + K 
Sbjct: 1   RMILSEEQITRLYRIRKTLMQMLKDRGYIVGDFEIEMTKSQFIQKYGENMKREDQTVLKG 60

Query: 263 MRNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV---------------------XXX 147
           +RNN S+QIY+FFPEE KVGVK +K YTN+MKEEG+                        
Sbjct: 61  LRNNPSDQIYVFFPEEPKVGVKPIKAYTNKMKEEGIHKAILVVQQNLTPIARSCITETIS 120

Query: 146 XKFHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
            KFHLEVFQEAELL+NIK+HVLVPEHQ+L+ EEKKTLLERYTVKETQL
Sbjct: 121 SKFHLEVFQEAELLINIKDHVLVPEHQLLSPEEKKTLLERYTVKETQL 168


>ref|XP_012477196.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Gossypium raimondii] gi|823154631|ref|XP_012477197.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A [Gossypium raimondii]
           gi|728836967|gb|KHG16410.1| dna-directed rna polymerases
           i, ii, and iii subunit rpabc1 [Gossypium arboreum]
           gi|763759819|gb|KJB27150.1| hypothetical protein
           B456_004G280900 [Gossypium raimondii]
           gi|763759820|gb|KJB27151.1| hypothetical protein
           B456_004G280900 [Gossypium raimondii]
           gi|763759821|gb|KJB27152.1| hypothetical protein
           B456_004G280900 [Gossypium raimondii]
          Length = 206

 Score =  226 bits (577), Expect = 4e-57
 Identities = 117/166 (70%), Positives = 129/166 (77%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MVLS++EI RLFRIRKTVMQML+DRGY VGDFEI ++K QF+ KYGENMKREDLV+NK  
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEINLSKQQFISKYGENMKREDLVINKTK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN++S+QIY+FFPEE KVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDNSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVN+KEH LVPEHQVLT EEKKTLL RYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNVKEHALVPEHQVLTNEEKKTLLHRYTVKETQL 166


>ref|XP_008451219.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Cucumis melo]
          Length = 207

 Score =  226 bits (577), Expect = 4e-57
 Identities = 118/167 (70%), Positives = 130/167 (77%), Gaps = 21/167 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MVLSEEEITRLFRIRKTV QMLRDRGY VGDFEI+MT+ QF QKYGENMKRED+V+NK+ 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV---------------------XXXX 144
           RN+SS+QIY+FFPEE KVG+K +KTYT RMK E V                         
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 143 KFHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
            FHLEVFQEAELLVNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQL
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQL 167


>ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 206

 Score =  226 bits (577), Expect = 4e-57
 Identities = 116/166 (69%), Positives = 130/166 (78%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M LSEEE++RLFR+RKT+M+ML DRGY+VGDFEI M+KY+FLQKYGENMKREDLVL K  
Sbjct: 1   MTLSEEELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKYEFLQKYGENMKREDLVLQKAK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RNNSS+QIY+FFPEE KVGVKTMKTYT RMK+E V                        K
Sbjct: 61  RNNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISIK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAE+LVNIK HVL+P+HQ LT EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAEMLVNIKNHVLIPKHQTLTPEEKKTLLERYTVKETQL 166


>ref|XP_012080620.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Jatropha curcas] gi|802658502|ref|XP_012080621.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like [Jatropha curcas]
           gi|643720408|gb|KDP30787.1| hypothetical protein
           JCGZ_13730 [Jatropha curcas]
          Length = 206

 Score =  226 bits (576), Expect = 5e-57
 Identities = 119/166 (71%), Positives = 129/166 (77%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M LSE+EI RLFRIRKTVMQML+DRGY+V D+EI MT+ QF+ KYGENMKREDLV+NK+ 
Sbjct: 1   MTLSEDEIKRLFRIRKTVMQMLKDRGYLVTDYEINMTREQFISKYGENMKREDLVINKSR 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN  S+QIY+FFPEEQKVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNEPSDQIYVFFPEEQKVGVKTMKTYTNRMKNENVYRAVLVVQQNLTPFARTCISEIASK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           F LEVFQEAELLVNIKEHVLVPEHQVLT EEKKTLLERYTVKETQL
Sbjct: 121 FQLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQL 166


>ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao] gi|508783467|gb|EOY30723.1| Eukaryotic
           rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 206

 Score =  226 bits (576), Expect = 5e-57
 Identities = 117/166 (70%), Positives = 130/166 (78%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MVLS++EI RLFRIRKTVMQML+DRGY VGDFEI MTK QF+ KYGENMKREDLV+NK  
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN++S+QIY+FFP+E KVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQE+ELLVN+KEH LVPEHQVLT EEKKTLL+RYTVKETQL
Sbjct: 121 FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQL 166


>gb|KJB27153.1| hypothetical protein B456_004G280900 [Gossypium raimondii]
          Length = 201

 Score =  225 bits (574), Expect = 9e-57
 Identities = 116/166 (69%), Positives = 129/166 (77%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MVLS++EI RLFRIRKTVMQML+DRGY VGDFEI ++K QF+ KYGENMKREDLV+NK  
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEINLSKQQFISKYGENMKREDLVINKTK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN++S+QIY+FFPEE KVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDNSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVN+KEH LVPEHQVLT EEKKTLL RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNVKEHALVPEHQVLTNEEKKTLLHRYTVKETQV 166


>ref|XP_009775519.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Nicotiana sylvestris] gi|698573867|ref|XP_009775520.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like [Nicotiana sylvestris]
          Length = 206

 Score =  225 bits (574), Expect = 9e-57
 Identities = 117/166 (70%), Positives = 130/166 (78%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M LSEEE++RLFR+RKT+M+ML DRGY+VG+FEI M+K+QFLQKYG+NMKREDLV+ K  
Sbjct: 1   MTLSEEELSRLFRVRKTLMEMLADRGYLVGEFEINMSKHQFLQKYGDNMKREDLVIQKAK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RNNSSEQIY+FFPEE KVGVKTMKTYT RMK+E V                        K
Sbjct: 61  RNNSSEQIYVFFPEEAKVGVKTMKTYTERMKKEDVFQAILVVQQNLTPFARTCISEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIK HVLVPEHQ LT EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKNHVLVPEHQPLTPEEKKTLLERYTVKETQL 166


>ref|XP_009605258.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Nicotiana tomentosiformis]
           gi|697192348|ref|XP_009605259.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like [Nicotiana
           tomentosiformis]
          Length = 206

 Score =  225 bits (574), Expect = 9e-57
 Identities = 117/166 (70%), Positives = 130/166 (78%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M LSEEE++RLFR+RKT+M+ML DRGY+VG+FEI M+K+QFLQKYG+NMKREDLV+ K  
Sbjct: 1   MTLSEEELSRLFRVRKTLMEMLADRGYLVGEFEINMSKHQFLQKYGDNMKREDLVIQKAK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RNNSSEQIY+FFPEE KVGVKTMKTYT RMK+E V                        K
Sbjct: 61  RNNSSEQIYVFFPEEAKVGVKTMKTYTERMKKEDVFQSILVVQQNLTPFARTCISEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIK HVLVPEHQ LT EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKNHVLVPEHQPLTPEEKKTLLERYTVKETQL 166


>ref|XP_012076737.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Jatropha curcas] gi|643724505|gb|KDP33706.1|
           hypothetical protein JCGZ_07277 [Jatropha curcas]
          Length = 206

 Score =  225 bits (574), Expect = 9e-57
 Identities = 119/166 (71%), Positives = 129/166 (77%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M LSE+EI +LFRIRKTVMQML+DRGY+V D+EI MT+ QF+ KYGENMKREDLV+NK+ 
Sbjct: 1   MTLSEDEIKKLFRIRKTVMQMLKDRGYLVTDYEINMTREQFISKYGENMKREDLVINKSR 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN  S+QIYIFFPEEQKVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNEPSDQIYIFFPEEQKVGVKTMKTYTNRMKNENVYRAILVVQQNLTPFARTCIAEIASK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           F LEVFQEAELLVNIKEHVLVPEHQVLT EEKKTLLERYTVKETQL
Sbjct: 121 FQLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQL 166


>ref|XP_006381734.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 206

 Score =  225 bits (573), Expect = 1e-56
 Identities = 119/166 (71%), Positives = 128/166 (77%), Gaps = 20/166 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           M L+EEEI RL RIRKTVMQML+DRGY VGDFEI+MT+ QF  KYG NMKREDLV+NK  
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV--------------------XXXXK 141
           RN+SS+QIY+FFPEE KVGVKTMKTYTNRMK E V                        K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 140 FHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
           FHLEVFQEAELLVNIKEHVLVPEHQVL+ EEKKTLLERYTVKETQL
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQL 166


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Cucumis sativus] gi|778727309|ref|XP_011659238.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like [Cucumis sativus]
           gi|700189484|gb|KGN44717.1| hypothetical protein
           Csa_7G374590 [Cucumis sativus]
          Length = 207

 Score =  224 bits (572), Expect = 2e-56
 Identities = 117/167 (70%), Positives = 129/167 (77%), Gaps = 21/167 (12%)
 Frame = -2

Query: 440 MVLSEEEITRLFRIRKTVMQMLRDRGYVVGDFEIEMTKYQFLQKYGENMKREDLVLNKNM 261
           MVLSEEEITRLFRIRKTV QMLRDRGY VGDFEI+MT+ QF QKYGENMKRED+V+NK+ 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 260 RNNSSEQIYIFFPEEQKVGVKTMKTYTNRMKEEGV---------------------XXXX 144
           RN+SS+QIY+FFPEE KVG+K +KTYT RMK E V                         
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 143 KFHLEVFQEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTVKETQL 3
            FHLEVFQEAELLVNIK+HVLVPEHQ+L  EEKKTLLERYTVKETQL
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQL 167