BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00002010
         (1278 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012831470.1| PREDICTED: DNA-directed RNA polymerase II su...   641   0.0  
ref|XP_011099129.1| PREDICTED: DNA-directed RNA polymerase II su...   637   e-180
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...   626   e-176
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...   623   e-176
ref|XP_009776334.1| PREDICTED: DNA-directed RNA polymerase II su...   620   e-174
ref|XP_009594602.1| PREDICTED: DNA-directed RNA polymerase II su...   620   e-174
gb|EPS58483.1| hypothetical protein M569_16331, partial [Genlise...   619   e-174
ref|XP_011073958.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   615   e-173
ref|XP_012469269.1| PREDICTED: DNA-directed RNA polymerase II su...   611   e-172
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ...   610   e-172
ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II su...   609   e-171
gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium r...   609   e-171
ref|XP_012491467.1| PREDICTED: DNA-directed RNA polymerase II su...   609   e-171
ref|XP_004146161.2| PREDICTED: DNA-directed RNA polymerase II su...   608   e-171
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...   608   e-171
gb|KRH28857.1| hypothetical protein GLYMA_11G081200 [Glycine max]     607   e-171
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...   607   e-171
ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   606   e-170
ref|XP_003612256.2| DNA-directed RNA polymerase [Medicago trunca...   606   e-170
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...   605   e-170

>ref|XP_012831470.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Erythranthe
            guttatus] gi|604343422|gb|EYU42342.1| hypothetical
            protein MIMGU_mgv1a000091mg [Erythranthe guttata]
          Length = 1842

 Score =  641 bits (1654), Expect = 0.0
 Identities = 320/356 (89%), Positives = 329/356 (92%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETCMA+MA+CPGHFGHLELAKPMFHIGFMK VLSILR VCFNCSKILADE+EPK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKIVLSILRCVCFNCSKILADEEEPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQAMRIRNPKNRLRKILDACKNK+KC+GGD+ID HS DTEEPVKKSRGGCGAQQPKISI
Sbjct: 121  FKQAMRIRNPKNRLRKILDACKNKTKCDGGDEIDGHSQDTEEPVKKSRGGCGAQQPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKMVAEYKL         QMPEPVERKQQL+AEKVLSILKRITDEDCQLLGLNPK+AR
Sbjct: 181  DGMKMVAEYKLQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKFAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_011099129.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Sesamum indicum]
          Length = 1848

 Score =  637 bits (1643), Expect = e-180
 Identities = 315/356 (88%), Positives = 328/356 (92%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEVAK+RVVQFGILSPDEIRQMSVVHIEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKIRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETCMA+MADCPGHFGHLELAKPMFHIGFMKTVLSILR VCFNCSKILADE++PK
Sbjct: 61   DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRCVCFNCSKILADEEDPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA+RIRNPKNRL+KILDACKNKSKCEGGD+IDV   DT+EPVKK+RGGCGAQQPKISI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTDEPVKKTRGGCGAQQPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKMVAEYK+         QMPEPVERKQQL+AEKVLSILKRITDEDCQLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKIQKKKNDDPEQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score =  626 bits (1615), Expect = e-176
 Identities = 308/356 (86%), Positives = 325/356 (91%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETCMA+MA+CPGHFGHLELAKPMFHIGFMK VLSILR VCFNCSKILADED+PK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQAMRIRNPKNRLRK+LDACKNK+KCEGGD+IDV  HDTEEPVKKSRGGCGAQQPKISI
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKMVAEYK+         QMPEPVERKQQL+AE+VLSILKR++DEDC LLGLNP++AR
Sbjct: 181  DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVD 356


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Solanum
            lycopersicum]
          Length = 1846

 Score =  623 bits (1607), Expect = e-176
 Identities = 307/356 (86%), Positives = 324/356 (91%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETCMA+MA+CPGHFGHLELAKPMFHIGFMK VLSILR VCFNCSKILADED+PK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQAMRIRNPKNRLRK+LDACKNK+KCEGGD+IDV   DTEEPVKKSRGGCGAQQPKISI
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKMVAEYK+         QMPEPVERKQQL+AE+VLSILKR++DEDC LLGLNP++AR
Sbjct: 181  DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVD 356


>ref|XP_009776334.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nicotiana
            sylvestris]
          Length = 1846

 Score =  620 bits (1598), Expect = e-174
 Identities = 306/356 (85%), Positives = 323/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFPFSPAEVAKVRVVQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETCMA+MA+CPGHFGHLELAKPMFHIGFMK VLSILR VCFNCSKILADED+PK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQAMRIRNPKNRL+K+LDACKNK+KCEGGD+IDV   + E PVKKSRGGCGAQQPKISI
Sbjct: 121  FKQAMRIRNPKNRLKKMLDACKNKTKCEGGDEIDVRGEEPEAPVKKSRGGCGAQQPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKMVAEYKL         QMPEPVERKQQL+AE+VLSILKR++DEDC LLGLNP+YAR
Sbjct: 181  DGMKMVAEYKLQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVD 356


>ref|XP_009594602.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nicotiana
            tomentosiformis]
          Length = 1846

 Score =  620 bits (1598), Expect = e-174
 Identities = 306/356 (85%), Positives = 323/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFPFSPAEVAKVRVVQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETCMA+MA+CPGHFGHLELAKPMFHIGFMK VLSILR VCFNCSKILADED+PK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQAMRIRNPKNRL+K+LDACKNK+KCEGGD+IDV   + E PVKKSRGGCGAQQPKISI
Sbjct: 121  FKQAMRIRNPKNRLKKMLDACKNKTKCEGGDEIDVRGEEPEAPVKKSRGGCGAQQPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKMVAEYKL         QMPEPVERKQQL+AE+VLSILKR++DEDC LLGLNP+YAR
Sbjct: 181  DGMKMVAEYKLQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVD 356


>gb|EPS58483.1| hypothetical protein M569_16331, partial [Genlisea aurea]
          Length = 652

 Score =  619 bits (1596), Expect = e-174
 Identities = 307/356 (86%), Positives = 322/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEV+K+RVVQFGILSPDEIRQMSVVHIEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVSKIRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETCMA+MA+CPGHFGHLELAKPMFHIGFMKTVLSILR VCFNCSKIL DE+EP 
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRCVCFNCSKILVDEEEPA 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQ+MRIRNPKNRLRKILDACKNKSKCEGGD+IDV   D+EEPVK+SRGGCGAQ+PKISI
Sbjct: 121  FKQSMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGADSEEPVKRSRGGCGAQKPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKMVAEYK          QMPEPVERKQ L+AEKVLSILKRITDEDCQLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKFQKKRNDEQEQMPEPVERKQILSAEKVLSILKRITDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLK+QE NG+ AHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEHNGSAAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_011073958.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit 1-like [Sesamum indicum]
          Length = 1843

 Score =  615 bits (1587), Expect = e-173
 Identities = 310/360 (86%), Positives = 322/360 (89%), Gaps = 4/360 (1%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIG----GLSDPR 903
            MDLRFPFSPAEVAKVRVVQFGI+SPDEIRQMSVVHIEH ET ERGKPKIG    GLSD R
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGIISPDEIRQMSVVHIEHGETMERGKPKIGMXICGLSDLR 60

Query: 902  LGTIDRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADE 723
            LGTI +KMKCETCM++MA+CPGHFGHLELAKPMFHIGFMK VLSILRSVCFNCSKILADE
Sbjct: 61   LGTIGKKMKCETCMSNMAECPGHFGHLELAKPMFHIGFMKVVLSILRSVCFNCSKILADE 120

Query: 722  DEPKFKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQP 543
            D+PKFKQAMRIRNPKNRLRKILDACKNKSKC+GGD+IDV   + +EPVKKSRGGCGAQQP
Sbjct: 121  DDPKFKQAMRIRNPKNRLRKILDACKNKSKCDGGDEIDVRGQEPDEPVKKSRGGCGAQQP 180

Query: 542  KISIDGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNP 363
            KISIDGMKMVAEYK+         QMPEPVERKQ L+AEKVLSILKRITDEDCQLLGLNP
Sbjct: 181  KISIDGMKMVAEYKIQKKKNDDQDQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNP 240

Query: 362  KYARPDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPA 183
            KYARPDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLK QERNGAPA
Sbjct: 241  KYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKLQERNGAPA 300

Query: 182  HIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            HIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  HIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 360


>ref|XP_012469269.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Gossypium
            raimondii] gi|763750176|gb|KJB17564.1| hypothetical
            protein B456_003G005700 [Gossypium raimondii]
            gi|763750177|gb|KJB17565.1| hypothetical protein
            B456_003G005700 [Gossypium raimondii]
            gi|763750178|gb|KJB17566.1| hypothetical protein
            B456_003G005700 [Gossypium raimondii]
            gi|763750179|gb|KJB17567.1| hypothetical protein
            B456_003G005700 [Gossypium raimondii]
          Length = 1847

 Score =  611 bits (1575), Expect = e-172
 Identities = 298/356 (83%), Positives = 322/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFPFSPAEVAKVR+VQFGILSPDEIRQMSVVHIEHSETTERGKPK+GGLSD RLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHSETTERGKPKVGGLSDTRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETC A+MA+CPGHFGHLELAKPMFHIGF+KTVLSI+R VCFNCSK+LADE++ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKVLADEEDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA++I+NPKNRL+KILDACKNK+KCEGGD+IDV   DTEEP+KKSRGGCGAQQPK+SI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDTEEPIKKSRGGCGAQQPKLSI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKM+AEYK          Q+PEPVERKQ LTAE+VLS+LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFHVATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|590702285|ref|XP_007046586.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score =  610 bits (1574), Expect = e-172
 Identities = 300/356 (84%), Positives = 321/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETC A+MA+CPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKILADE+E K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA++I+NPKNRL+KILDACKNKSKCEGGD+IDV   DTEEPVKKSRGGCGAQQPK+SI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKM+AEYK          Q+PEPVERKQ LTAE+VLS+LKRI+DEDCQLLGLNPK+AR
Sbjct: 181  DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFHVATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X2
            [Gossypium raimondii]
          Length = 1832

 Score =  609 bits (1570), Expect = e-171
 Identities = 298/356 (83%), Positives = 321/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEVAKVRVVQFGILSPDEIRQMSVV IEHSETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRK+KCETC A+MA+CPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKILADE++ K
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA++I+NPKNRL+KILDACKNK+KCEGGD+IDV   D EEPVKKSRGGCGAQQPK++I
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKM+AEYK          Q+PEPVERKQ LTAE+VLS+LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFHVATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium raimondii]
          Length = 1809

 Score =  609 bits (1570), Expect = e-171
 Identities = 298/356 (83%), Positives = 321/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEVAKVRVVQFGILSPDEIRQMSVV IEHSETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRK+KCETC A+MA+CPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKILADE++ K
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA++I+NPKNRL+KILDACKNK+KCEGGD+IDV   D EEPVKKSRGGCGAQQPK++I
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKM+AEYK          Q+PEPVERKQ LTAE+VLS+LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFHVATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_012491467.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X1
            [Gossypium raimondii] gi|823191464|ref|XP_012491468.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1
            isoform X1 [Gossypium raimondii]
            gi|823191467|ref|XP_012491470.1| PREDICTED: DNA-directed
            RNA polymerase II subunit 1 isoform X1 [Gossypium
            raimondii] gi|823191470|ref|XP_012491471.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1 isoform X1
            [Gossypium raimondii] gi|763776132|gb|KJB43255.1|
            hypothetical protein B456_007G190500 [Gossypium
            raimondii] gi|763776133|gb|KJB43256.1| hypothetical
            protein B456_007G190500 [Gossypium raimondii]
            gi|763776135|gb|KJB43258.1| hypothetical protein
            B456_007G190500 [Gossypium raimondii]
          Length = 1846

 Score =  609 bits (1570), Expect = e-171
 Identities = 298/356 (83%), Positives = 321/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEVAKVRVVQFGILSPDEIRQMSVV IEHSETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRK+KCETC A+MA+CPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKILADE++ K
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA++I+NPKNRL+KILDACKNK+KCEGGD+IDV   D EEPVKKSRGGCGAQQPK++I
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            DGMKM+AEYK          Q+PEPVERKQ LTAE+VLS+LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFHVATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_004146161.2| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Cucumis sativus]
            gi|778674691|ref|XP_011650276.1| PREDICTED: DNA-directed
            RNA polymerase II subunit 1 [Cucumis sativus]
            gi|700200498|gb|KGN55631.1| hypothetical protein
            Csa_3G002510 [Cucumis sativus]
          Length = 1867

 Score =  608 bits (1568), Expect = e-171
 Identities = 297/356 (83%), Positives = 320/356 (89%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETC A+MA+CPGHFGHLELAKPMFHIGFMKTVL+I+RSVCFNCSKIL DE++PK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA+RI+NPKNRLRKILDACKNK+KCEGGD+IDV   D+++PVKKSRGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            +GMKM AEYK          Q+PEPVERKQ LTAE+VL ILKRITDEDC+LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Cicer arietinum]
          Length = 1834

 Score =  608 bits (1568), Expect = e-171
 Identities = 298/356 (83%), Positives = 321/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPKIGGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETC ASMA+CPGHFG+LELAKPMFHIGF+KTVLSI+R VCFNCSKILADE + K
Sbjct: 61   DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA+RI++PKNRLRKILDACKNK+KCEGGDDID+  HDTEEPVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPVKKSRGGCGAQQPKITI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            +GMKM+AEYK          Q+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDW+I              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>gb|KRH28857.1| hypothetical protein GLYMA_11G081200 [Glycine max]
          Length = 1803

 Score =  607 bits (1566), Expect = e-171
 Identities = 296/356 (83%), Positives = 321/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRK+KCETC ASMA+CPGHFGHLELAKPMFHIGF+KTVL+I+R VCFNCSKILADE++ K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA+RIRNPKNRL+KILDACKNKSKCEGGD+ID+   DT+EPVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            +GMKM+AEYK          Q+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max] gi|947080066|gb|KRH28855.1| hypothetical protein
            GLYMA_11G081200 [Glycine max] gi|947080067|gb|KRH28856.1|
            hypothetical protein GLYMA_11G081200 [Glycine max]
          Length = 1827

 Score =  607 bits (1566), Expect = e-171
 Identities = 296/356 (83%), Positives = 321/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRK+KCETC ASMA+CPGHFGHLELAKPMFHIGF+KTVL+I+R VCFNCSKILADE++ K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA+RIRNPKNRL+KILDACKNKSKCEGGD+ID+   DT+EPVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            +GMKM+AEYK          Q+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit 1 [Cucumis melo]
          Length = 1837

 Score =  606 bits (1562), Expect = e-170
 Identities = 295/356 (82%), Positives = 320/356 (89%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETC A+MA+CPGHFGHLELAKPMFHIGFMKTVL+I+RSVCFNCSKIL DE++PK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA+RI+NPKNRLRKILDACKNK+KCEGGD+IDV   D+++PVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            +GMKM AEYK          Q+PEPVERKQ LTAE+VL ILKRITD+DC+LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_003612256.2| DNA-directed RNA polymerase [Medicago truncatula]
            gi|657384219|gb|AES95214.2| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1834

 Score =  606 bits (1562), Expect = e-170
 Identities = 296/356 (83%), Positives = 322/356 (90%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MD+RFPFSPAEVAKVR+VQFGILSPDEIRQM+VV IEH ETTERGKPKIGGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMAVVQIEHGETTERGKPKIGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETC ASMA+CPGHFG+LELAKPMFHIGF+KTVLSI+R VCFNCSKILADE++ K
Sbjct: 61   DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADENDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQAMRI+NPK+RLRKILDACKNK+KCEGGDDID+  HDT+EP+KKSRGGCGAQQPKI+I
Sbjct: 121  FKQAMRIKNPKHRLRKILDACKNKTKCEGGDDIDLPEHDTKEPLKKSRGGCGAQQPKITI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            +GMKM+AEYK          Q+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDW+I              VMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score =  605 bits (1561), Expect = e-170
 Identities = 296/356 (83%), Positives = 320/356 (89%)
 Frame = -2

Query: 1070 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 891
            MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 890  DRKMKCETCMASMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 711
            DRKMKCETC A+MA+CPGHFGHLELAKPMFHIGFMKTVLSI+RSVCFNCSKILADED+ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 710  FKQAMRIRNPKNRLRKILDACKNKSKCEGGDDIDVHSHDTEEPVKKSRGGCGAQQPKISI 531
            FKQA++IRNPKNRL+KILDACKNK+KCEGGD+IDV   D EEP+KK++GGCGAQQPK++I
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 530  DGMKMVAEYKLXXXXXXXXXQMPEPVERKQQLTAEKVLSILKRITDEDCQLLGLNPKYAR 351
            +GMKM+AEYK          Q+PEPVERKQ LTAE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 350  PDWMIXXXXXXXXXXXXXXVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 171
            PDWMI              VMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 170  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 3
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 356