BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00000849
         (692 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012829347.1| PREDICTED: general transcription factor IIH ...   390   e-106
ref|XP_011101336.1| PREDICTED: general transcription factor IIH ...   385   e-104
ref|XP_009776618.1| PREDICTED: general transcription factor IIH ...   352   1e-94
ref|XP_006347459.1| PREDICTED: general transcription factor IIH ...   351   2e-94
ref|XP_004241513.1| PREDICTED: general transcription factor IIH ...   351   2e-94
ref|XP_009626298.1| PREDICTED: general transcription factor IIH ...   350   4e-94
emb|CDP12389.1| unnamed protein product [Coffea canephora]            339   8e-91
ref|XP_002284465.2| PREDICTED: general transcription factor IIH ...   328   3e-87
emb|CBI19033.3| unnamed protein product [Vitis vinifera]              328   3e-87
ref|XP_010675078.1| PREDICTED: general transcription factor IIH ...   321   2e-85
ref|XP_010675067.1| PREDICTED: general transcription factor IIH ...   321   2e-85
gb|KNA24492.1| hypothetical protein SOVF_014890 [Spinacia oleracea]   320   7e-85
ref|XP_010273663.1| PREDICTED: general transcription factor IIH ...   316   8e-84
ref|XP_009363173.1| PREDICTED: general transcription factor IIH ...   316   1e-83
ref|XP_008391898.1| PREDICTED: general transcription factor IIH ...   313   5e-83
ref|XP_008219657.1| PREDICTED: general transcription factor IIH ...   313   6e-83
ref|XP_010065813.1| PREDICTED: general transcription factor IIH ...   312   1e-82
ref|XP_010999370.1| PREDICTED: general transcription factor IIH ...   310   4e-82
ref|XP_007019036.1| Basal transcription factor complex subunit-r...   310   5e-82
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...   310   5e-82

>ref|XP_012829347.1| PREDICTED: general transcription factor IIH subunit 3 [Erythranthe
           guttatus] gi|604297450|gb|EYU17663.1| hypothetical
           protein MIMGU_mgv1a011002mg [Erythranthe guttata]
          Length = 295

 Score =  390 bits (1002), Expect = e-106
 Identities = 186/211 (88%), Positives = 191/211 (90%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEHLLHKLEEFVDNDQELCSEESVDGPGFXXXXXXXXX 456
           ATGHNSC Y+FDSS +QSQNQRAEHLL KLEEFVD D+ LC EESVDG GF         
Sbjct: 63  ATGHNSCDYVFDSSVAQSQNQRAEHLLQKLEEFVDKDESLCREESVDGQGFSLLSGSLSM 122

Query: 455 XLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSCVIGAQHS 276
            LCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRS VPID+CVIG QHS
Sbjct: 123 ALCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDACVIGTQHS 182

Query: 275 AFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCHKN 96
           AFLQQASYITGGVYLKPQ+LDGLFQYLSTVFATDLHSR FLQLPKPAGVDFRASCFCHKN
Sbjct: 183 AFLQQASYITGGVYLKPQLLDGLFQYLSTVFATDLHSRAFLQLPKPAGVDFRASCFCHKN 242

Query: 95  TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ
Sbjct: 243 TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 273


>ref|XP_011101336.1| PREDICTED: general transcription factor IIH subunit 3 [Sesamum
           indicum] gi|747106105|ref|XP_011101337.1| PREDICTED:
           general transcription factor IIH subunit 3 [Sesamum
           indicum]
          Length = 292

 Score =  385 bits (990), Expect = e-104
 Identities = 184/211 (87%), Positives = 191/211 (90%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEHLLHKLEEFVDNDQELCSEESVDGPGFXXXXXXXXX 456
           ATG+NSC YIFDSS S+ Q QRAEHLL KLE+FV+ D+ LC E+SVDGPGF         
Sbjct: 63  ATGYNSCDYIFDSSTSEGQTQRAEHLLQKLEDFVNKDESLCREDSVDGPGFSLLSGSLSM 122

Query: 455 XLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSCVIGAQHS 276
            LCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRS VPIDSCVIGAQHS
Sbjct: 123 ALCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVIGAQHS 182

Query: 275 AFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCHKN 96
           AFLQQASYITGGVYLKPQ+LDGLFQYLSTVFATDLHSR FLQLPKPAGVDFRASCFCHKN
Sbjct: 183 AFLQQASYITGGVYLKPQLLDGLFQYLSTVFATDLHSRGFLQLPKPAGVDFRASCFCHKN 242

Query: 95  TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ
Sbjct: 243 TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 273


>ref|XP_009776618.1| PREDICTED: general transcription factor IIH subunit 3 [Nicotiana
           sylvestris]
          Length = 291

 Score =  352 bits (903), Expect = 1e-94
 Identities = 170/211 (80%), Positives = 181/211 (85%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEHLLHKLEEFVDNDQELCSEESVDGPGFXXXXXXXXX 456
           ATG+NSC Y+FDSS S  Q  RAE LL KLEEFVD D+ L  E+SVDG GF         
Sbjct: 64  ATGYNSCDYVFDSSSSSMQ--RAECLLEKLEEFVDKDETLSQEDSVDGVGFSLLSGSLSM 121

Query: 455 XLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSCVIGAQHS 276
            LCYIQRVFR+GPLHP PRILCLHGSPDGPGQYVA+MN+IFSAQRS VPIDSCVIG+QHS
Sbjct: 122 ALCYIQRVFRTGPLHPQPRILCLHGSPDGPGQYVAVMNAIFSAQRSMVPIDSCVIGSQHS 181

Query: 275 AFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCHKN 96
           AFLQQASYITGGVYLKPQ+ DGLFQYLSTVFATDLHSR FLQLP+P GVDFRASCFCHKN
Sbjct: 182 AFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRAFLQLPRPVGVDFRASCFCHKN 241

Query: 95  TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           TIDMGYICSVCLSIFCKH KKCSTCGS FG+
Sbjct: 242 TIDMGYICSVCLSIFCKHHKKCSTCGSNFGE 272


>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
           tuberosum]
          Length = 290

 Score =  351 bits (901), Expect = 2e-94
 Identities = 170/211 (80%), Positives = 181/211 (85%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEHLLHKLEEFVDNDQELCSEESVDGPGFXXXXXXXXX 456
           ATG+NSC Y+FDSS S  Q  RAE LL KLE+FVD D+ L  E+SVDG GF         
Sbjct: 64  ATGYNSCDYVFDSSTSSMQ--RAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGSLSM 121

Query: 455 XLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSCVIGAQHS 276
            LCYIQRVFRSGPLHP PRILCLHGSPDGPGQYVA+MNSIFSAQRS VPIDSCVIG+QHS
Sbjct: 122 ALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHS 181

Query: 275 AFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCHKN 96
           AFLQQASYITGGVYLKPQ+ DGLFQYLSTVFATDLHSR FLQLP+P GVDFRASCFCHKN
Sbjct: 182 AFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKN 241

Query: 95  TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           TIDMG+ICSVCLSIFCKH KKCSTCGS FG+
Sbjct: 242 TIDMGFICSVCLSIFCKHHKKCSTCGSNFGE 272


>ref|XP_004241513.1| PREDICTED: general transcription factor IIH subunit 3 [Solanum
           lycopersicum]
          Length = 290

 Score =  351 bits (901), Expect = 2e-94
 Identities = 170/211 (80%), Positives = 181/211 (85%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEHLLHKLEEFVDNDQELCSEESVDGPGFXXXXXXXXX 456
           ATG+NSC Y+FDSS S  Q  RAE LL KLE+FVD D+ L  E+SVDG GF         
Sbjct: 64  ATGYNSCDYVFDSSTSSMQ--RAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSM 121

Query: 455 XLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSCVIGAQHS 276
            LCYIQRVFRSGPLHP PRILCLHGSPDGPGQYVA+MNSIFSAQRS VPIDSCVIG+QHS
Sbjct: 122 ALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHS 181

Query: 275 AFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCHKN 96
           AFLQQASYITGGVYLKPQ+ DGLFQYLSTVFATDLHSR FLQLP+P GVDFRASCFCHKN
Sbjct: 182 AFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKN 241

Query: 95  TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           TIDMG+ICSVCLSIFCKH KKCSTCGS FG+
Sbjct: 242 TIDMGFICSVCLSIFCKHHKKCSTCGSNFGE 272


>ref|XP_009626298.1| PREDICTED: general transcription factor IIH subunit 3 [Nicotiana
           tomentosiformis]
          Length = 288

 Score =  350 bits (899), Expect = 4e-94
 Identities = 169/211 (80%), Positives = 181/211 (85%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEHLLHKLEEFVDNDQELCSEESVDGPGFXXXXXXXXX 456
           ATG++SC Y+FDSS S    QRAE LL KLEEFVD D+ L  E+SVDG GF         
Sbjct: 64  ATGYHSCDYVFDSSSSM---QRAECLLEKLEEFVDKDESLSQEDSVDGVGFSLLSGSLSM 120

Query: 455 XLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSCVIGAQHS 276
            LCYIQRVFR+GPLHP PRILCLHGSPDGPGQYVA+MN+IFSAQRS VPIDSCVIG+QHS
Sbjct: 121 ALCYIQRVFRTGPLHPQPRILCLHGSPDGPGQYVAVMNAIFSAQRSMVPIDSCVIGSQHS 180

Query: 275 AFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCHKN 96
           AFLQQASYITGGVYLKPQ+ DGLFQYLSTVFATDLHSR FLQLP+P GVDFRASCFCHKN
Sbjct: 181 AFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRAFLQLPRPVGVDFRASCFCHKN 240

Query: 95  TIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           TIDMGYICSVCLSIFCKH KKCSTCGS FG+
Sbjct: 241 TIDMGYICSVCLSIFCKHHKKCSTCGSNFGE 271


>emb|CDP12389.1| unnamed protein product [Coffea canephora]
          Length = 287

 Score =  339 bits (870), Expect = 8e-91
 Identities = 168/213 (78%), Positives = 180/213 (84%), Gaps = 2/213 (0%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEHLLHKLEEFVDNDQELCS--EESVDGPGFXXXXXXX 462
           ATG N+C Y+FDSS S S +QRAE LL KLEEF +ND+ L    ++S +G G        
Sbjct: 64  ATGINACGYVFDSS-SGSVSQRAESLLPKLEEFAENDESLSERDDDSGNGVGSSLLSGSL 122

Query: 461 XXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSCVIGAQ 282
              LCYIQRVFRSGPLHP PRILCLHGSPDGPGQYVAIMNSIFSAQRS VPIDSCV+G Q
Sbjct: 123 SMALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVVGIQ 182

Query: 281 HSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCH 102
           HSAFLQQASYITGGVYLKPQ LDGLFQYL+TVFATDLHSR FL+LPKP GVDFRASCFCH
Sbjct: 183 HSAFLQQASYITGGVYLKPQQLDGLFQYLATVFATDLHSRNFLRLPKPVGVDFRASCFCH 242

Query: 101 KNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           KNTIDMG+ICSVCLSIFCKHQKKCSTCGS FGQ
Sbjct: 243 KNTIDMGFICSVCLSIFCKHQKKCSTCGSTFGQ 275


>ref|XP_002284465.2| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera]
          Length = 303

 Score =  328 bits (840), Expect = 3e-87
 Identities = 166/219 (75%), Positives = 176/219 (80%), Gaps = 8/219 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQS----QNQR----AEHLLHKLEEFVDNDQELCSEESVDGPGFX 480
           ATG NSC++IFDSS   +    +N R      +LL KLEEFV  D++L  E    G G  
Sbjct: 67  ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSS 126

Query: 479 XXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDS 300
                    LCYIQRVFR+GPLHP PRILCL GSPDGP QYVA+MN+IFSAQRS VPIDS
Sbjct: 127 LLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDS 186

Query: 299 CVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFR 120
           CVIGAQHSAFLQQASYITGGVYLKPQ LDGLFQYLSTVFATDLHSR FLQLPKPAGVDFR
Sbjct: 187 CVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFR 246

Query: 119 ASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           ASCFCHKNTIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 247 ASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 285


>emb|CBI19033.3| unnamed protein product [Vitis vinifera]
          Length = 297

 Score =  328 bits (840), Expect = 3e-87
 Identities = 166/219 (75%), Positives = 176/219 (80%), Gaps = 8/219 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQS----QNQR----AEHLLHKLEEFVDNDQELCSEESVDGPGFX 480
           ATG NSC++IFDSS   +    +N R      +LL KLEEFV  D++L  E    G G  
Sbjct: 61  ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSS 120

Query: 479 XXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDS 300
                    LCYIQRVFR+GPLHP PRILCL GSPDGP QYVA+MN+IFSAQRS VPIDS
Sbjct: 121 LLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDS 180

Query: 299 CVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFR 120
           CVIGAQHSAFLQQASYITGGVYLKPQ LDGLFQYLSTVFATDLHSR FLQLPKPAGVDFR
Sbjct: 181 CVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFR 240

Query: 119 ASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           ASCFCHKNTIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 241 ASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 279


>ref|XP_010675078.1| PREDICTED: general transcription factor IIH subunit 3 isoform X2
           [Beta vulgaris subsp. vulgaris]
          Length = 278

 Score =  321 bits (823), Expect = 2e-85
 Identities = 160/225 (71%), Positives = 175/225 (77%), Gaps = 14/225 (6%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSS-----DSQSQNQRAEH---------LLHKLEEFVDNDQELCSEESV 498
           ATGHN+C YIFDSS      S S NQ +++         ++  LEEFV  D+ L S + V
Sbjct: 37  ATGHNTCGYIFDSSLSSVSSSISSNQSSDNATMPSFCSDVMKNLEEFVTKDESLSSVDVV 96

Query: 497 DGPGFXXXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRS 318
            G             LCYIQRVFRSGPLHP PRILCLHGSPDGP QYVA+MN+IFSAQRS
Sbjct: 97  HGVDSSLLSGSLSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPEQYVAVMNAIFSAQRS 156

Query: 317 QVPIDSCVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKP 138
            VPIDSCVIG QHSAFLQQASYITGGVYLKPQ L+GLFQYLSTVFATDLHSR F+QLPKP
Sbjct: 157 MVPIDSCVIGGQHSAFLQQASYITGGVYLKPQQLEGLFQYLSTVFATDLHSRNFIQLPKP 216

Query: 137 AGVDFRASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
            GVDFRASCFCHKNTIDMGYICSVCLSIFC H KKCSTCGS++G+
Sbjct: 217 VGVDFRASCFCHKNTIDMGYICSVCLSIFCMHHKKCSTCGSLYGR 261


>ref|XP_010675067.1| PREDICTED: general transcription factor IIH subunit 3 isoform X1
           [Beta vulgaris subsp. vulgaris]
           gi|870868920|gb|KMT19706.1| hypothetical protein
           BVRB_1g007610 [Beta vulgaris subsp. vulgaris]
          Length = 306

 Score =  321 bits (823), Expect = 2e-85
 Identities = 160/225 (71%), Positives = 175/225 (77%), Gaps = 14/225 (6%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSS-----DSQSQNQRAEH---------LLHKLEEFVDNDQELCSEESV 498
           ATGHN+C YIFDSS      S S NQ +++         ++  LEEFV  D+ L S + V
Sbjct: 65  ATGHNTCGYIFDSSLSSVSSSISSNQSSDNATMPSFCSDVMKNLEEFVTKDESLSSVDVV 124

Query: 497 DGPGFXXXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRS 318
            G             LCYIQRVFRSGPLHP PRILCLHGSPDGP QYVA+MN+IFSAQRS
Sbjct: 125 HGVDSSLLSGSLSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPEQYVAVMNAIFSAQRS 184

Query: 317 QVPIDSCVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKP 138
            VPIDSCVIG QHSAFLQQASYITGGVYLKPQ L+GLFQYLSTVFATDLHSR F+QLPKP
Sbjct: 185 MVPIDSCVIGGQHSAFLQQASYITGGVYLKPQQLEGLFQYLSTVFATDLHSRNFIQLPKP 244

Query: 137 AGVDFRASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
            GVDFRASCFCHKNTIDMGYICSVCLSIFC H KKCSTCGS++G+
Sbjct: 245 VGVDFRASCFCHKNTIDMGYICSVCLSIFCMHHKKCSTCGSLYGR 289


>gb|KNA24492.1| hypothetical protein SOVF_014890 [Spinacia oleracea]
          Length = 305

 Score =  320 bits (819), Expect = 7e-85
 Identities = 159/225 (70%), Positives = 175/225 (77%), Gaps = 14/225 (6%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSS-----DSQSQNQRA---------EHLLHKLEEFVDNDQELCSEESV 498
           ATGHN+C YI+DSS      S S N+ +           +L  LE+FV ND+ L S ++ 
Sbjct: 64  ATGHNTCGYIYDSSLSSVSSSISANESSGDAKMPAFCSEVLKSLEDFVKNDESLSSVDAG 123

Query: 497 DGPGFXXXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRS 318
           +G G           LCY+QRVFR+GPLHP PRILCLHGSPDGP QYVA+MNSIFSAQRS
Sbjct: 124 NGVGSSLLSGSLSMALCYVQRVFRTGPLHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRS 183

Query: 317 QVPIDSCVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKP 138
            VP+DSCVIGAQHSAFLQQASYITGGVYLKPQ LDGLFQYLSTVFATDLHSR F+QLPKP
Sbjct: 184 MVPVDSCVIGAQHSAFLQQASYITGGVYLKPQYLDGLFQYLSTVFATDLHSRKFIQLPKP 243

Query: 137 AGVDFRASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
            GVDFRASCFCHKNTIDMGYICSVCLSIFC   KKCSTCGS +GQ
Sbjct: 244 VGVDFRASCFCHKNTIDMGYICSVCLSIFCMPHKKCSTCGSEYGQ 288


>ref|XP_010273663.1| PREDICTED: general transcription factor IIH subunit 3 isoform X1
           [Nelumbo nucifera]
          Length = 303

 Score =  316 bits (810), Expect = 8e-84
 Identities = 160/220 (72%), Positives = 170/220 (77%), Gaps = 9/220 (4%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQRAEH---------LLHKLEEFVDNDQELCSEESVDGPGF 483
           ATG NSC YI+DSS S +  +  E+         LL  LEEF+  DQEL  +ES  G   
Sbjct: 66  ATGLNSCDYIYDSSSSPTTVESLENGRMPALCSKLLQNLEEFLARDQELNKDESPPGIAS 125

Query: 482 XXXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPID 303
                     LCYIQ+VFRSGPLHP PRILCL GS DGP QYVAIMN+IFSAQRS VPID
Sbjct: 126 SLLSGSLSLALCYIQKVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPID 185

Query: 302 SCVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDF 123
           +CVIGAQHSAFLQQASYITGGVYLKP  LDGLFQYLSTVF+TDL SR FLQLPKP GVDF
Sbjct: 186 ACVIGAQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFSTDLQSRSFLQLPKPVGVDF 245

Query: 122 RASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           RASCFCHK TIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 246 RASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 285


>ref|XP_009363173.1| PREDICTED: general transcription factor IIH subunit 3 [Pyrus x
           bretschneideri] gi|694371047|ref|XP_009363174.1|
           PREDICTED: general transcription factor IIH subunit 3
           [Pyrus x bretschneideri]
           gi|694371051|ref|XP_009363175.1| PREDICTED: general
           transcription factor IIH subunit 3 [Pyrus x
           bretschneideri]
          Length = 297

 Score =  316 bits (809), Expect = 1e-83
 Identities = 159/219 (72%), Positives = 170/219 (77%), Gaps = 8/219 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQ--------RAEHLLHKLEEFVDNDQELCSEESVDGPGFX 480
           ATG+NSCSYI+DSS   +Q          R  +LL KLEEFV  D++L  E S +G    
Sbjct: 61  ATGYNSCSYIYDSSSDSNQGSDHGRIMPARCSNLLQKLEEFVIKDEQLFKEGSREGISSS 120

Query: 479 XXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDS 300
                    LCYIQRVFRSGPLHP PRILCL GS DGP QYVAIMNSIFSAQRS VPIDS
Sbjct: 121 LLSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNSIFSAQRSMVPIDS 180

Query: 299 CVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFR 120
           C +G+ +SAFLQQASYITGGVYLKPQ  +GLFQYLSTVFATDLHSR FLQLPK  GVDFR
Sbjct: 181 CYMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFR 240

Query: 119 ASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           ASCFCHK TIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 241 ASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 279


>ref|XP_008391898.1| PREDICTED: general transcription factor IIH subunit 3 [Malus
           domestica] gi|657998960|ref|XP_008391899.1| PREDICTED:
           general transcription factor IIH subunit 3 [Malus
           domestica]
          Length = 297

 Score =  313 bits (803), Expect = 5e-83
 Identities = 158/218 (72%), Positives = 168/218 (77%), Gaps = 8/218 (3%)
 Frame = -1

Query: 632 TGHNSCSYIFDSSDSQSQNQ--------RAEHLLHKLEEFVDNDQELCSEESVDGPGFXX 477
           TG+NSCSYI+DSS   +Q          R   LL KLEEFV  D++L  E S +G     
Sbjct: 62  TGYNSCSYIYDSSSDSNQGSDHGRIMPARCSXLLQKLEEFVIKDEQLFKEGSREGISSSL 121

Query: 476 XXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSC 297
                   LCYIQRVFRSGPLHP PRILCL GS DGP QYVAIMNSIFSAQRS VPIDSC
Sbjct: 122 LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNSIFSAQRSMVPIDSC 181

Query: 296 VIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRA 117
            +G+ +SAFLQQASYITGGVYLKPQ  +GLFQYLSTVFATDLHSR FLQLPK  GVDFRA
Sbjct: 182 YMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRA 241

Query: 116 SCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           SCFCHK TIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 242 SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 279


>ref|XP_008219657.1| PREDICTED: general transcription factor IIH subunit 3 [Prunus mume]
          Length = 296

 Score =  313 bits (802), Expect = 6e-83
 Identities = 158/218 (72%), Positives = 170/218 (77%), Gaps = 7/218 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQ-------RAEHLLHKLEEFVDNDQELCSEESVDGPGFXX 477
           ATG+NSCSYI+DSS S +Q         R  +LL KLEEFV  D++L  E   +G     
Sbjct: 61  ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIKDEQLIKEGLREGIASSL 120

Query: 476 XXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSC 297
                   LCYIQRVFRSGPLHP PRILCL GS DGP QYVAIMN+IFSAQRS VPIDSC
Sbjct: 121 LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 296 VIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRA 117
            +G+ +SAFLQQASYITGGVYLKPQ  +GLFQYLSTVFATDLHSR FLQLPK  GVDFRA
Sbjct: 181 YMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRA 240

Query: 116 SCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           SCFCHK TIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 241 SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 278


>ref|XP_010065813.1| PREDICTED: general transcription factor IIH subunit 3 [Eucalyptus
           grandis] gi|629097712|gb|KCW63477.1| hypothetical
           protein EUGRSUZ_G01112 [Eucalyptus grandis]
           gi|629097713|gb|KCW63478.1| hypothetical protein
           EUGRSUZ_G01112 [Eucalyptus grandis]
           gi|629097714|gb|KCW63479.1| hypothetical protein
           EUGRSUZ_G01112 [Eucalyptus grandis]
          Length = 296

 Score =  312 bits (800), Expect = 1e-82
 Identities = 156/218 (71%), Positives = 168/218 (77%), Gaps = 7/218 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQR-------AEHLLHKLEEFVDNDQELCSEESVDGPGFXX 477
           ATGHN C Y++DSS   S++         +  LL KLEEFV  D++L  +E         
Sbjct: 61  ATGHNCCDYVYDSSSPASRSAGTGKLSALSVDLLEKLEEFVCRDEKLLKKEPEGSIASSL 120

Query: 476 XXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSC 297
                   LCYIQRVFRSGP HPHPRILCLHGS DGP QYVAIMN+IFSAQRS VPIDSC
Sbjct: 121 LSGSLSMALCYIQRVFRSGPRHPHPRILCLHGSQDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 296 VIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRA 117
            IGAQ+SAFLQQASYITGGVYLKPQ+L+G FQYLSTVF TDLHSR FLQLPK  GVDFRA
Sbjct: 181 FIGAQNSAFLQQASYITGGVYLKPQLLEGTFQYLSTVFGTDLHSRGFLQLPKSVGVDFRA 240

Query: 116 SCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           SCFCHK TIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 241 SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 278


>ref|XP_010999370.1| PREDICTED: general transcription factor IIH subunit 3 isoform X2
           [Populus euphratica] gi|743911031|ref|XP_010999371.1|
           PREDICTED: general transcription factor IIH subunit 3
           isoform X2 [Populus euphratica]
          Length = 298

 Score =  310 bits (795), Expect = 4e-82
 Identities = 155/219 (70%), Positives = 172/219 (78%), Gaps = 8/219 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQ----NQRA----EHLLHKLEEFVDNDQELCSEESVDGPGFX 480
           A+G+N+C YI+DSS   SQ    N R      +LL KLEEF+  D++L  E+S       
Sbjct: 62  ASGYNTCDYIYDSSSDASQLGSENGRIPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSS 121

Query: 479 XXXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDS 300
                    LCYIQRVFRSGPLHP PRILCL GSPDGP QYVA+MN+IFSAQRS VPIDS
Sbjct: 122 LLSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDS 181

Query: 299 CVIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFR 120
           C +GA +SAFLQQASYITGGVY+KPQ LDGLFQYL+TVFATDLHSR F+QLP+PAGVDFR
Sbjct: 182 CYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFR 241

Query: 119 ASCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           ASCFCHK TIDMGYICSVCLSIFC H KKCSTCGSVFGQ
Sbjct: 242 ASCFCHKTTIDMGYICSVCLSIFCNHHKKCSTCGSVFGQ 280


>ref|XP_007019036.1| Basal transcription factor complex subunit-related isoform 1
           [Theobroma cacao] gi|508724364|gb|EOY16261.1| Basal
           transcription factor complex subunit-related isoform 1
           [Theobroma cacao]
          Length = 296

 Score =  310 bits (794), Expect = 5e-82
 Identities = 156/218 (71%), Positives = 168/218 (77%), Gaps = 7/218 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQR-------AEHLLHKLEEFVDNDQELCSEESVDGPGFXX 477
           ATG+NSC+YIFDSS   +Q+            LL KLEEF+  D++L  E          
Sbjct: 61  ATGYNSCNYIFDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSL 120

Query: 476 XXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSC 297
                   LCYIQRVFRSG LHPHPRILCL GSPDGP QYVAIMN+IFSAQRS VPIDSC
Sbjct: 121 LSGSLSMALCYIQRVFRSGALHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 296 VIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRA 117
            +GAQ+SAFLQQASYITGGV+ KPQ LDGLFQYL T+FATDLHSR FL LPKP GVDFRA
Sbjct: 181 YMGAQNSAFLQQASYITGGVHHKPQHLDGLFQYLMTIFATDLHSRSFLHLPKPVGVDFRA 240

Query: 116 SCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           SCFCHKNTIDMGYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 241 SCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQ 278


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3 isoform X2
           [Fragaria vesca subsp. vesca]
          Length = 298

 Score =  310 bits (794), Expect = 5e-82
 Identities = 154/218 (70%), Positives = 168/218 (77%), Gaps = 7/218 (3%)
 Frame = -1

Query: 635 ATGHNSCSYIFDSSDSQSQNQR-------AEHLLHKLEEFVDNDQELCSEESVDGPGFXX 477
           ATG++SCSYI+DS+ +  Q            HLL KLEEFV  D++L  E S +G     
Sbjct: 61  ATGYSSCSYIYDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSL 120

Query: 476 XXXXXXXXLCYIQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSQVPIDSC 297
                   LCYIQ+VFRSGP HPHPRILCL GS DGP QYVAIMN+IFSAQRS VPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 296 VIGAQHSAFLQQASYITGGVYLKPQMLDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRA 117
            +G+ +SAFLQQASYITGGVYLKPQ  DGL QYL+TVFATDLHSR FLQLPK AGVDFRA
Sbjct: 181 YMGSNNSAFLQQASYITGGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRA 240

Query: 116 SCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQ 3
           SCFCHK TID GYICSVCLSIFCKH KKCSTCGSVFGQ
Sbjct: 241 SCFCHKKTIDTGYICSVCLSIFCKHHKKCSTCGSVFGQ 278