BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver32_contig00009755
         (2021 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_010241844.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   622   0.0  
XP_010241843.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   621   0.0  
XP_010241845.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   602   0.0  
XP_010241846.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   600   0.0  
XP_010653602.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   570   0.0  
CBI32760.3 unnamed protein product, partial [Vitis vinifera]          570   0.0  
XP_019077288.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   568   0.0  
GAV75806.1 Sigma70_r3 domain-containing protein/Sigma70_r2 domai...   560   0.0  
XP_018858063.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   552   0.0  
XP_018858062.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   549   0.0  
XP_011018731.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   546   0.0  
XP_012485938.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   544   0.0  
XP_012485937.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   544   0.0  
XP_015898520.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   543   0.0  
XP_011018728.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   542   0.0  
XP_016723150.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   541   0.0  
XP_016723149.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   541   0.0  
XP_017603238.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   540   0.0  
XP_017603237.1 PREDICTED: RNA polymerase sigma factor sigF, chlo...   540   0.0  
KHG01807.1 RNA polymerase sigma factor rpoD [Gossypium arboreum]      537   0.0  

>XP_010241844.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  622 bits (1605), Expect = 0.0
 Identities = 342/570 (60%), Positives = 422/570 (74%), Gaps = 10/570 (1%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQ 293
            ME GRNL+SS    P + QL+N+   SV +LHE               RHFPASVL QEQ
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKNSSS-SVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQ 59

Query: 294  RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 470
            RDD+R  L + RE+K  QA LDR ++++   L +EKK   S   D+Y + FERQLLY PG
Sbjct: 60   RDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKK---SCQPDRYWEGFERQLLYWPG 116

Query: 471  LWYLSAPS--QRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVD- 641
            LWYL  PS  + E   LS+  QS ++   + + V+  D L LAK+AVL SKQAASL  D 
Sbjct: 117  LWYL-LPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDY 175

Query: 642  ----SNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISS 809
                ++SH     +L P    N I P  +E  VRS RLLERQSK+R  P+  ++  E S+
Sbjct: 176  ELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWIPRPKVVVSEAST 234

Query: 810  LRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQS 986
             R +D H K     D +DPLRLFL G E +QLLT KEE ELF+ VQEL RLEEVKQRLQS
Sbjct: 235  SRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQS 294

Query: 987  QFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQD 1166
            QFDREPT+VEWAEAVGM+C +LQ  LHSG+ SREK+IY+NFR+VVHVAK+YQG+G+NLQD
Sbjct: 295  QFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQD 354

Query: 1167 LLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQV 1346
            LLQEGS GL+KSLEKFKP AGCRF+TYAYWWIRQ++RKAIF +S++IRLPENVY+ L QV
Sbjct: 355  LLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQV 414

Query: 1347 KNAKEVLIKEGHQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTA 1526
            K AK++ I+EGH PTNEE+AK+VG TV KLERL ++T+ PLS+Q+P+W+DQ TTFQ +TA
Sbjct: 415  KKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITA 474

Query: 1527 DPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSK 1706
            D +VE P+  V+K LMRRHVRNL+S+LPPKE+RIIR+RYGIE+ E KSL +IG +FGLSK
Sbjct: 475  DTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSK 534

Query: 1707 ERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            ERVRQLE+RAL KL+ CLSSQGL AY +LL
Sbjct: 535  ERVRQLESRALHKLKQCLSSQGLGAYADLL 564


>XP_010241843.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  621 bits (1601), Expect = 0.0
 Identities = 341/572 (59%), Positives = 422/572 (73%), Gaps = 12/572 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNAHP--LSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-Q 287
            ME GRNL+SS    P + QL+N+    + V +LHE               RHFPASVL Q
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKNSSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLLQ 60

Query: 288  EQRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYS 464
            EQRDD+R  L + RE+K  QA LDR ++++   L +EKK   S   D+Y + FERQLLY 
Sbjct: 61   EQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKK---SCQPDRYWEGFERQLLYW 117

Query: 465  PGLWYLSAPS--QRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIV 638
            PGLWYL  PS  + E   LS+  QS ++   + + V+  D L LAK+AVL SKQAASL  
Sbjct: 118  PGLWYL-LPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAK 176

Query: 639  D-----SNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEI 803
            D     ++SH     +L P    N I P  +E  VRS RLLERQSK+R  P+  ++  E 
Sbjct: 177  DYELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWIPRPKVVVSEA 235

Query: 804  SSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRL 980
            S+ R +D H K     D +DPLRLFL G E +QLLT KEE ELF+ VQEL RLEEVKQRL
Sbjct: 236  STSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRL 295

Query: 981  QSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNL 1160
            QSQFDREPT+VEWAEAVGM+C +LQ  LHSG+ SREK+IY+NFR+VVHVAK+YQG+G+NL
Sbjct: 296  QSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNL 355

Query: 1161 QDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALR 1340
            QDLLQEGS GL+KSLEKFKP AGCRF+TYAYWWIRQ++RKAIF +S++IRLPENVY+ L 
Sbjct: 356  QDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLS 415

Query: 1341 QVKNAKEVLIKEGHQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAV 1520
            QVK AK++ I+EGH PTNEE+AK+VG TV KLERL ++T+ PLS+Q+P+W+DQ TTFQ +
Sbjct: 416  QVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEI 475

Query: 1521 TADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGL 1700
            TAD +VE P+  V+K LMRRHVRNL+S+LPPKE+RIIR+RYGIE+ E KSL +IG +FGL
Sbjct: 476  TADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGL 535

Query: 1701 SKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            SKERVRQLE+RAL KL+ CLSSQGL AY +LL
Sbjct: 536  SKERVRQLESRALHKLKQCLSSQGLGAYADLL 567


>XP_010241845.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  602 bits (1553), Expect = 0.0
 Identities = 329/543 (60%), Positives = 405/543 (74%), Gaps = 10/543 (1%)
 Frame = +3

Query: 198  VAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQRDDLRSLLHL-REEKPHQAALDRTQID 371
            V +LHE               RHFPASVL QEQRDD+R  L + RE+K  QA LDR +++
Sbjct: 2    VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 372  NDTSLNQEKKEHGSESSDKYLKDFERQLLYSPGLWYLSAPS--QRENKALSLDMQSMSSD 545
            +   L +EKK   S   D+Y + FERQLLY PGLWYL  PS  + E   LS+  QS ++ 
Sbjct: 62   DKVHLYEEKK---SCQPDRYWEGFERQLLYWPGLWYL-LPSLYKGEKPLLSMVTQSTAAG 117

Query: 546  ADEELHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSHLPNADELIPSFGMNDISPP 710
              + + V+  D L LAK+AVL SKQAASL  D     ++SH     +L P    N I P 
Sbjct: 118  TVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PL 176

Query: 711  EKEKIVRSTRLLERQSKKRRAPKSALLGDEISSLRTTDRHHKTSL-IDLSDPLRLFLSGA 887
             +E  VRS RLLERQSK+R  P+  ++  E S+ R +D H K     D +DPLRLFL G 
Sbjct: 177  REEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGP 236

Query: 888  EARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQFDREPTVVEWAEAVGMSCATLQLHLH 1067
            E +QLLT KEE ELF+ VQEL RLEEVKQRLQSQFDREPT+VEWAEAVGM+C +LQ  LH
Sbjct: 237  ETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILH 296

Query: 1068 SGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTY 1247
            SG+ SREK+IY+NFR+VVHVAK+YQG+G+NLQDLLQEGS GL+KSLEKFKP AGCRF+TY
Sbjct: 297  SGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATY 356

Query: 1248 AYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKNAKEVLIKEGHQPTNEEIAKQVGFTV 1427
            AYWWIRQ++RKAIF +S++IRLPENVY+ L QVK AK++ I+EGH PTNEE+AK+VG TV
Sbjct: 357  AYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITV 416

Query: 1428 GKLERLLITTKTPLSMQRPIWSDQATTFQAVTADPKVETPEQGVSKDLMRRHVRNLLSVL 1607
             KLERL ++T+ PLS+Q+P+W+DQ TTFQ +TAD +VE P+  V+K LMRRHVRNL+S+L
Sbjct: 417  EKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISIL 476

Query: 1608 PPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKERVRQLENRALDKLRNCLSSQGLEAYT 1787
            PPKE+RIIR+RYGIE+ E KSL +IG +FGLSKERVRQLE+RAL KL+ CLSSQGL AY 
Sbjct: 477  PPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYA 536

Query: 1788 NLL 1796
            +LL
Sbjct: 537  DLL 539


>XP_010241846.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  600 bits (1546), Expect = 0.0
 Identities = 325/522 (62%), Positives = 400/522 (76%), Gaps = 10/522 (1%)
 Frame = +3

Query: 261  RHFPASVL-QEQRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYL 434
            RHFPASVL QEQRDD+R  L + RE+K  QA LDR ++++   L +EKK   S   D+Y 
Sbjct: 8    RHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKK---SCQPDRYW 64

Query: 435  KDFERQLLYSPGLWYLSAPS--QRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVL 608
            + FERQLLY PGLWYL  PS  + E   LS+  QS ++   + + V+  D L LAK+AVL
Sbjct: 65   EGFERQLLYWPGLWYL-LPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVL 123

Query: 609  VSKQAASLIVD-----SNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRA 773
             SKQAASL  D     ++SH     +L P    N I P  +E  VRS RLLERQSK+R  
Sbjct: 124  ASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWI 182

Query: 774  PKSALLGDEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQEL 950
            P+  ++  E S+ R +D H K     D +DPLRLFL G E +QLLT KEE ELF+ VQEL
Sbjct: 183  PRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQEL 242

Query: 951  TRLEEVKQRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVA 1130
             RLEEVKQRLQSQFDREPT+VEWAEAVGM+C +LQ  LHSG+ SREK+IY+NFR+VVHVA
Sbjct: 243  IRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVA 302

Query: 1131 KNYQGKGMNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIR 1310
            K+YQG+G+NLQDLLQEGS GL+KSLEKFKP AGCRF+TYAYWWIRQ++RKAIF +S++IR
Sbjct: 303  KHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIR 362

Query: 1311 LPENVYNALRQVKNAKEVLIKEGHQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIW 1490
            LPENVY+ L QVK AK++ I+EGH PTNEE+AK+VG TV KLERL ++T+ PLS+Q+P+W
Sbjct: 363  LPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVW 422

Query: 1491 SDQATTFQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKS 1670
            +DQ TTFQ +TAD +VE P+  V+K LMRRHVRNL+S+LPPKE+RIIR+RYGIE+ E KS
Sbjct: 423  ADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKS 482

Query: 1671 LAQIGDVFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            L +IG +FGLSKERVRQLE+RAL KL+ CLSSQGL AY +LL
Sbjct: 483  LQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLL 524


>XP_010653602.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Vitis vinifera]
          Length = 567

 Score =  570 bits (1470), Expect = 0.0
 Identities = 321/571 (56%), Positives = 407/571 (71%), Gaps = 9/571 (1%)
 Frame = +3

Query: 111  TTMEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-Q 287
            ++MEAG N+LSS P  P +   RN+   SV +LH+               R FP SVL Q
Sbjct: 5    SSMEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIA-RKFPTSVLLQ 62

Query: 288  EQRDDLRSLLH-LREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYS 464
            EQRD+ R     L++E+  QA L++ Q++   S ++E     S+  ++Y+ +FERQLL  
Sbjct: 63   EQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEEN----SDDHNQYMVNFERQLLLQ 118

Query: 465  PGLWYLSAPSQRENKA--LSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIV 638
            PGLWY    SQ   K+   S  M+S+++D +  + VK  D+LALAK+A+  SKQA SL  
Sbjct: 119  PGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY- 177

Query: 639  DSNSHLPNAD-ELIPSFGMNDISPPE---KEKIVRSTRLLERQSKKRRAPKSALLGDEIS 806
              N+ L  AD E  PS  +  IS P    +EK VRSTRLLER+SKKRR PK A+  +   
Sbjct: 178  -ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV-HENHG 235

Query: 807  SLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQS 986
            S R   +       D  DPLRLFL G E R+LLTAKEE EL +Q+QEL RLEEVK+RLQS
Sbjct: 236  SRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQS 295

Query: 987  QFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQD 1166
               REPTVVEWAEAVG+SC  LQ  LHSG+RSR+K+IY+N RMVVH+AK YQG+G+NLQD
Sbjct: 296  HLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQD 355

Query: 1167 LLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQV 1346
            LLQEGS GL+ S+EKFKP+AGCRF++YAYWWIRQ+VRKAIF HS++IRLPEN+Y+ L +V
Sbjct: 356  LLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKV 415

Query: 1347 KNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVT 1523
            K AK + I+EG H PT EEIA++VG T+ KL+RLL+ T+ PLSMQ+P+W+DQ TTFQ VT
Sbjct: 416  KEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVT 475

Query: 1524 ADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLS 1703
            AD  +E P+  V+K LMR+HVRNLL VL PKE+RIIRLR+GI DG  ++L++IG VFG S
Sbjct: 476  ADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFS 535

Query: 1704 KERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            KERVRQLE RAL KL+ CLSS GLE+YT+LL
Sbjct: 536  KERVRQLEQRALHKLKQCLSSHGLESYTDLL 566


>CBI32760.3 unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score =  570 bits (1468), Expect = 0.0
 Identities = 321/569 (56%), Positives = 405/569 (71%), Gaps = 9/569 (1%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQ 293
            MEAG N+LSS P  P +   RN+   SV +LH+               R FP SVL QEQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIA-RKFPTSVLLQEQ 58

Query: 294  RDDLRSLLH-LREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 470
            RD+ R     L++E+  QA L++ Q++   S ++E     S+  ++Y+ +FERQLL  PG
Sbjct: 59   RDEYRPFPQALKDERTFQATLEKRQMEIVVSADEEN----SDDHNQYMVNFERQLLLQPG 114

Query: 471  LWYLSAPSQRENKA--LSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVDS 644
            LWY    SQ   K+   S  M+S+++D +  + VK  D+LALAK+A+  SKQA SL    
Sbjct: 115  LWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY--E 172

Query: 645  NSHLPNAD-ELIPSFGMNDISPPE---KEKIVRSTRLLERQSKKRRAPKSALLGDEISSL 812
            N+ L  AD E  PS  +  IS P    +EK VRSTRLLER+SKKRR PK A+  +   S 
Sbjct: 173  NAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV-HENHGSR 231

Query: 813  RTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQF 992
            R   +       D  DPLRLFL G E R+LLTAKEE EL +Q+QEL RLEEVK+RLQS  
Sbjct: 232  RAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHL 291

Query: 993  DREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLL 1172
             REPTVVEWAEAVG+SC  LQ  LHSG+RSR+K+IY+N RMVVH+AK YQG+G+NLQDLL
Sbjct: 292  KREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLL 351

Query: 1173 QEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKN 1352
            QEGS GL+ S+EKFKP+AGCRF++YAYWWIRQ+VRKAIF HS++IRLPEN+Y+ L +VK 
Sbjct: 352  QEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKE 411

Query: 1353 AKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTAD 1529
            AK + I+EG H PT EEIA++VG T+ KL+RLL+ T+ PLSMQ+P+W+DQ TTFQ VTAD
Sbjct: 412  AKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTAD 471

Query: 1530 PKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKE 1709
              +E P+  V+K LMR+HVRNLL VL PKE+RIIRLR+GI DG  ++L++IG VFG SKE
Sbjct: 472  TGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKE 531

Query: 1710 RVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            RVRQLE RAL KL+ CLSS GLE+YT+LL
Sbjct: 532  RVRQLEQRALHKLKQCLSSHGLESYTDLL 560


>XP_019077288.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Vitis vinifera]
          Length = 566

 Score =  568 bits (1463), Expect = 0.0
 Identities = 318/570 (55%), Positives = 404/570 (70%), Gaps = 8/570 (1%)
 Frame = +3

Query: 111  TTMEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-Q 287
            ++MEAG N+LSS P  P +   RN+   SV +LH+               R FP SVL Q
Sbjct: 5    SSMEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIA-RKFPTSVLLQ 62

Query: 288  EQRDDLRSLLH-LREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYS 464
            EQRD+ R     L++E+  QA L++ Q++   S ++E     S+  ++Y+ +FERQLL  
Sbjct: 63   EQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEEN----SDDHNQYMVNFERQLLLQ 118

Query: 465  PGLWYLSAPSQRENKA--LSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIV 638
            PGLWY    SQ   K+   S  M+S+++D +  + VK  D+LALAK+A+  SKQA SL  
Sbjct: 119  PGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY- 177

Query: 639  DSNSHLPNADELIPSFGMNDISPPE---KEKIVRSTRLLERQSKKRRAPKSALLGDEISS 809
              N+ L  AD       +  IS P    +EK VRSTRLLER+SKKRR PK A+  +   S
Sbjct: 178  -ENAKLLGADLEDSPSSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV-HENHGS 235

Query: 810  LRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQ 989
             R   +       D  DPLRLFL G E R+LLTAKEE EL +Q+QEL RLEEVK+RLQS 
Sbjct: 236  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 295

Query: 990  FDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDL 1169
              REPTVVEWAEAVG+SC  LQ  LHSG+RSR+K+IY+N RMVVH+AK YQG+G+NLQDL
Sbjct: 296  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 355

Query: 1170 LQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVK 1349
            LQEGS GL+ S+EKFKP+AGCRF++YAYWWIRQ+VRKAIF HS++IRLPEN+Y+ L +VK
Sbjct: 356  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 415

Query: 1350 NAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTA 1526
             AK + I+EG H PT EEIA++VG T+ KL+RLL+ T+ PLSMQ+P+W+DQ TTFQ VTA
Sbjct: 416  EAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTA 475

Query: 1527 DPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSK 1706
            D  +E P+  V+K LMR+HVRNLL VL PKE+RIIRLR+GI DG  ++L++IG VFG SK
Sbjct: 476  DTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSK 535

Query: 1707 ERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            ERVRQLE RAL KL+ CLSS GLE+YT+LL
Sbjct: 536  ERVRQLEQRALHKLKQCLSSHGLESYTDLL 565


>GAV75806.1 Sigma70_r3 domain-containing protein/Sigma70_r2 domain-containing
            protein/Sigma70_r4 domain-containing protein [Cephalotus
            follicularis]
          Length = 564

 Score =  560 bits (1443), Expect = 0.0
 Identities = 314/571 (54%), Positives = 404/571 (70%), Gaps = 11/571 (1%)
 Frame = +3

Query: 117  MEA-GRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QE 290
            MEA GRNLL+SPP  PSK  L+N    S +                   RH P SVL QE
Sbjct: 1    MEATGRNLLTSPPSFPSKTHLKNGLYSSSSA-----SPAITSVSTTLTARHLPTSVLLQE 55

Query: 291  QRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSP 467
            QRD+LR L HL +EEK  Q  LD  Q+++   +N+EK    S + D+ ++DFE QLL+ P
Sbjct: 56   QRDELRPLSHLFKEEKTPQTTLDGRQMESGALINEEKI---SGNLDQLVQDFEHQLLHWP 112

Query: 468  GLWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVDS 644
            GLW   +PSQ  E+ +  L  QS+ +D+   + V+  D ++LA++A+  SK AASL  D+
Sbjct: 113  GLWNFLSPSQTSEDPSSLLTTQSVVTDSQPLMDVEPSDAISLAERALSASKLAASLAQDT 172

Query: 645  NSHLPNAD---ELIPSFGMNDIS--PPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISS 809
             S    AD    L  S G N  S  P E+ KIVRSTR+LER SK+R  PK  ++  E+S 
Sbjct: 173  KSGTIEADIDYPLSTSSGSNSSSNFPIEEVKIVRSTRVLERWSKRRNIPKPNVIVHEMSI 232

Query: 810  LRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQS 986
             R  D   K     D +DPLRLFL G E  QLL+ KEE EL +Q+Q L +LEEVK RLQS
Sbjct: 233  SRRADVKRKLKEGFDPNDPLRLFLWGPETTQLLSFKEESELIVQIQNLLKLEEVKSRLQS 292

Query: 987  QFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQD 1166
            QF REPT++EWAEAVGMS   L+  LHSG+RSREK+I +N RMVVH+AK YQG+G++LQD
Sbjct: 293  QFGREPTLIEWAEAVGMSHQVLRSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQD 352

Query: 1167 LLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQV 1346
            L+QEGS GL+KS++KFKP AGCRF++YAYWWIRQ VRKAIF HSK+IRLPE  Y+ L +V
Sbjct: 353  LMQEGSMGLMKSVKKFKPQAGCRFASYAYWWIRQMVRKAIFQHSKTIRLPERFYSLLGKV 412

Query: 1347 KNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVT 1523
              AK+  I+EG H P+ EE+A +VG TV KL++L+++T+ PLSMQ+P+W+DQ TT Q +T
Sbjct: 413  MEAKKSYIQEGNHHPSIEELAGRVGITVDKLQKLILSTRNPLSMQQPVWADQKTTLQEIT 472

Query: 1524 ADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLS 1703
            ADP++E P+  VSK LMR+HVRNLLSVL  KEK+IIRLR+GI DGEQ+SL++IG++FGLS
Sbjct: 473  ADPEIEVPDLSVSKQLMRQHVRNLLSVLSQKEKQIIRLRFGIGDGEQRSLSEIGNIFGLS 532

Query: 1704 KERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            KERVRQLENRA+ KL+ CL +QGL+AY NL+
Sbjct: 533  KERVRQLENRAIYKLKQCLDNQGLDAYANLI 563


>XP_018858063.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Juglans regia]
          Length = 570

 Score =  552 bits (1423), Expect = 0.0
 Identities = 315/574 (54%), Positives = 402/574 (70%), Gaps = 14/574 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRN------AHPLSVAVLHEXXXXXXXXXXXXXXXRHFPAS 278
            ME GRNLLSS P  PS   L+N      +   S  +LHE               +   AS
Sbjct: 1    MEVGRNLLSSKPSFPSGIHLKNCLSSSSSSSTSTLMLHEQAASVVTSMLSTCTPQRRRAS 60

Query: 279  V-LQEQRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQ 452
            + LQEQRD+   LLH+ +E+      L+RT I    S+N+EK     E+S++ L DFERQ
Sbjct: 61   IPLQEQRDENDPLLHVFKEDAMSWGILERTWIVAGASVNEEKIP---ENSNQLLHDFERQ 117

Query: 453  LLYSPGLWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAAS 629
            LL+ PGL  LS P Q  +  + SL MQ + +  +  + V+  D++ALAK+A+  S++AA 
Sbjct: 118  LLHWPGLGQLSPPLQTGKTMSSSLSMQPIPASTENPMDVEECDIVALAKKALSASQEAAL 177

Query: 630  LIVDSNSHLPNADELIPS-FGMNDIS--PPEKEKIVRSTRLLERQSKKRRAPKSALLGDE 800
            L  DS     + DE + S FG       P E+EK+VRSTR+LER+SKKRR PKS +   E
Sbjct: 178  LAEDSKLIGSDFDESLSSGFGSRIFVNIPLEEEKVVRSTRILERRSKKRRVPKSNV--HE 235

Query: 801  ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQR 977
              S R  D   K S   D +DPLRLFL G E +QLLT +EE EL  QVQ+L +LEEVK R
Sbjct: 236  NHSSRNVDVKRKISEGFDPNDPLRLFLWGPETKQLLTFEEESELIAQVQDLLKLEEVKIR 295

Query: 978  LQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMN 1157
            LQS F REPT+VEWAE VG+S   L+  L+SG+ SREK+IY+N RMVVHVAK Y G+G++
Sbjct: 296  LQSHFGREPTLVEWAEGVGLSYRALKSRLYSGNSSREKLIYANLRMVVHVAKLYPGRGLS 355

Query: 1158 LQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNAL 1337
             QDLLQEGS GL+KS+EKFKP +GCRF+TYAYWWIRQS+RKAI+ HS++IRLPENV+  L
Sbjct: 356  FQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKAIYQHSRTIRLPENVHALL 415

Query: 1338 RQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQ 1514
             ++  +K +LI+EG H PT EE+A+ VG TV KLE+LL TT+ PLSMQRP+W+DQ TTFQ
Sbjct: 416  GKMMESKRLLIQEGNHHPTKEELARHVGITVNKLEKLLYTTRLPLSMQRPVWTDQDTTFQ 475

Query: 1515 AVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVF 1694
             +TAD +VE PE  V+K LMR+H RNLLS+L P+E+RIIRLR+GIEDG+QKSL++IG++F
Sbjct: 476  EITADTEVEIPEVSVAKKLMRQHARNLLSILSPRERRIIRLRFGIEDGKQKSLSEIGNLF 535

Query: 1695 GLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            GLSKERVRQLENRAL +L+ CL S+GL AYT LL
Sbjct: 536  GLSKERVRQLENRALHRLKQCLGSEGLVAYTELL 569


>XP_018858062.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Juglans regia]
          Length = 575

 Score =  549 bits (1414), Expect = 0.0
 Identities = 315/579 (54%), Positives = 401/579 (69%), Gaps = 19/579 (3%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRN------AHPLSVAVLHEXXXXXXXXXXXXXXXRHFPAS 278
            ME GRNLLSS P  PS   L+N      +   S  +LHE               +   AS
Sbjct: 1    MEVGRNLLSSKPSFPSGIHLKNCLSSSSSSSTSTLMLHEQAASVVTSMLSTCTPQRRRAS 60

Query: 279  V-LQEQRDDLRSLLHLREEKPHQ------AALDRTQIDNDTSLNQEKKEHGSESSDKYLK 437
            + LQEQRD+   LLH+ +E            L+RT I    S+N+EK     E+S++ L 
Sbjct: 61   IPLQEQRDENDPLLHVFKEDAMSWVGLFLGILERTWIVAGASVNEEKIP---ENSNQLLH 117

Query: 438  DFERQLLYSPGLWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVS 614
            DFERQLL+ PGL  LS P Q  +  + SL MQ + +  +  + V+  D++ALAK+A+  S
Sbjct: 118  DFERQLLHWPGLGQLSPPLQTGKTMSSSLSMQPIPASTENPMDVEECDIVALAKKALSAS 177

Query: 615  KQAASLIVDSNSHLPNADELIPS-FGMNDIS--PPEKEKIVRSTRLLERQSKKRRAPKSA 785
            ++AA L  DS     + DE + S FG       P E+EK+VRSTR+LER+SKKRR PKS 
Sbjct: 178  QEAALLAEDSKLIGSDFDESLSSGFGSRIFVNIPLEEEKVVRSTRILERRSKKRRVPKSN 237

Query: 786  LLGDEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLE 962
            +   E  S R  D   K S   D +DPLRLFL G E +QLLT +EE EL  QVQ+L +LE
Sbjct: 238  V--HENHSSRNVDVKRKISEGFDPNDPLRLFLWGPETKQLLTFEEESELIAQVQDLLKLE 295

Query: 963  EVKQRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQ 1142
            EVK RLQS F REPT+VEWAE VG+S   L+  L+SG+ SREK+IY+N RMVVHVAK Y 
Sbjct: 296  EVKIRLQSHFGREPTLVEWAEGVGLSYRALKSRLYSGNSSREKLIYANLRMVVHVAKLYP 355

Query: 1143 GKGMNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPEN 1322
            G+G++ QDLLQEGS GL+KS+EKFKP +GCRF+TYAYWWIRQS+RKAI+ HS++IRLPEN
Sbjct: 356  GRGLSFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKAIYQHSRTIRLPEN 415

Query: 1323 VYNALRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQ 1499
            V+  L ++  +K +LI+EG H PT EE+A+ VG TV KLE+LL TT+ PLSMQRP+W+DQ
Sbjct: 416  VHALLGKMMESKRLLIQEGNHHPTKEELARHVGITVNKLEKLLYTTRLPLSMQRPVWTDQ 475

Query: 1500 ATTFQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQ 1679
             TTFQ +TAD +VE PE  V+K LMR+H RNLLS+L P+E+RIIRLR+GIEDG+QKSL++
Sbjct: 476  DTTFQEITADTEVEIPEVSVAKKLMRQHARNLLSILSPRERRIIRLRFGIEDGKQKSLSE 535

Query: 1680 IGDVFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            IG++FGLSKERVRQLENRAL +L+ CL S+GL AYT LL
Sbjct: 536  IGNLFGLSKERVRQLENRALHRLKQCLGSEGLVAYTELL 574


>XP_011018731.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  546 bits (1406), Expect = 0.0
 Identities = 300/566 (53%), Positives = 400/566 (70%), Gaps = 6/566 (1%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQ 293
            MEAGR LLSS P  P++  L+N+   SV +L E               +HFP SVL QEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQ 60

Query: 294  RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 470
            RD+ R L ++ +E++P QA LDR + +  TS ++ K    S+  D+ +++FE QL + P 
Sbjct: 61   RDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKD---SDELDQMVENFEYQLHHWPT 117

Query: 471  LWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVDSN 647
             W L  PSQ+ +N ++S   QS++   D+ + V+  D++ LAK+A+  SK AA L  D++
Sbjct: 118  YWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFL-ADNS 176

Query: 648  SHLPN-ADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISSLRTTD 824
            + L N A     SF + ++      +IVRS R L RQS  RR PK+  +  E    ++ D
Sbjct: 177  TDLDNLASTSSSSFSLEEV------RIVRSRRHLARQSLNRRVPKTKDMIFETYDSKSAD 230

Query: 825  RHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQFDRE 1001
               + S   D +DPLRLFL G E +QLLTAKEE EL  Q+Q+L  LE VK RL+SQF RE
Sbjct: 231  VQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGRE 290

Query: 1002 PTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLLQEG 1181
            PT+VEWA+AVG+SC+ L+L LHSG+RSREK+I +N RMVVH+AK YQ +G+ LQDLLQEG
Sbjct: 291  PTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEG 350

Query: 1182 SKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKNAKE 1361
            + GL+KS+EKFKP AGCRF+TYAYWWIRQ++ KAIF HS++IRLPENVY  L +V  AK 
Sbjct: 351  TVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKR 410

Query: 1362 VLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTADPKV 1538
              I+EG HQPT EEIA++VG  + KLE+LL  T+TPLSMQ+ +WSDQ TTFQ +TAD ++
Sbjct: 411  SYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEI 470

Query: 1539 ETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKERVR 1718
            E P+  V+K LMR+H+R LL++L  KE+RIIRLR+GIEDG+QKSL++IG+VFGLSKERVR
Sbjct: 471  EIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVR 530

Query: 1719 QLENRALDKLRNCLSSQGLEAYTNLL 1796
            QLE+RAL KL+ C+ S GL+AY +LL
Sbjct: 531  QLESRALYKLKQCVGSHGLDAYADLL 556


>XP_012485938.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Gossypium raimondii]
          Length = 562

 Score =  544 bits (1402), Expect = 0.0
 Identities = 302/574 (52%), Positives = 396/574 (68%), Gaps = 14/574 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXX-RHFPASV 281
            MEA RN LS PP   ++ QL+N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARNFLSLPPSFSTRTQLKNSVSSLPSSSVSMFHEQAAAAAATSIPIHSVARHFPTSV 60

Query: 282  L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 449
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++ K  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEGKASN----------NFEQ 110

Query: 450  QLLYSPGLWYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAAS 629
            Q+L  P L  LS     EN + SL+MQS+++D +E ++V+   +LALAK A+  SKQA +
Sbjct: 111  QMLQWPDL-RLSVLELGENPSSSLNMQSVAADTEETMNVEPSTILALAKNALSASKQALA 169

Query: 630  LIVDSNSHLPNADELIPSFGMNDIS--PPEKEKI--VRSTRLLERQSKKRRAPKSALLGD 797
            L  D    L   D L  S G  + S  P E+E+   VRSTR LERQSK+RR P   ++ D
Sbjct: 170  LAEDLKLDLD--DSLSNSLGSANSSTLPVEEEEAPTVRSTRRLERQSKRRRMPSKFMISD 227

Query: 798  EISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQR 977
              S  +T  R   +   D +DPLRLFL G E  QLLTAKEE EL ++VQ+L RLE++K  
Sbjct: 228  TYSLRKTNVRKKVSGSYDPNDPLRLFLRGPETTQLLTAKEESELIVEVQDLMRLEKLKSN 287

Query: 978  LQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMN 1157
            LQSQF REPT+VEWAEA+G+SC+ LQ  LH+G+RSREK++Y+NFRMV HVAK YQG+GMN
Sbjct: 288  LQSQFGREPTLVEWAEAIGLSCSALQAELHNGNRSREKLVYANFRMVFHVAKQYQGRGMN 347

Query: 1158 LQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNAL 1337
            LQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ L
Sbjct: 348  LQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSLL 407

Query: 1338 RQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQ 1514
             +V  AK   I+EG H P+ EE+A + G TV KL++LL TT+TPLSMQ+P+W+DQ TTFQ
Sbjct: 408  GKVVKAKRSYIQEGNHCPSKEELATRAGITVQKLDKLLFTTRTPLSMQQPVWTDQDTTFQ 467

Query: 1515 AVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVF 1694
             VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++F
Sbjct: 468  EVTPDTGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNIF 527

Query: 1695 GLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            GLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 528  GLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 561


>XP_012485937.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Gossypium raimondii] KJB36541.1 hypothetical
            protein B456_006G165200 [Gossypium raimondii]
          Length = 564

 Score =  544 bits (1401), Expect = 0.0
 Identities = 302/575 (52%), Positives = 396/575 (68%), Gaps = 15/575 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXX-RHFPASV 281
            MEA RN LS PP   ++ QL+N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARNFLSLPPSFSTRTQLKNSVSSLPSSSVSMFHEQAAAAAATSIPIHSVARHFPTSV 60

Query: 282  L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 449
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++ K  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEGKASN----------NFEQ 110

Query: 450  QLLYSPGL-WYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAA 626
            Q+L  P L   LS     EN + SL+MQS+++D +E ++V+   +LALAK A+  SKQA 
Sbjct: 111  QMLQWPDLRQLLSVLELGENPSSSLNMQSVAADTEETMNVEPSTILALAKNALSASKQAL 170

Query: 627  SLIVDSNSHLPNADELIPSFGMNDIS--PPEKEKI--VRSTRLLERQSKKRRAPKSALLG 794
            +L  D    L   D L  S G  + S  P E+E+   VRSTR LERQSK+RR P   ++ 
Sbjct: 171  ALAEDLKLDLD--DSLSNSLGSANSSTLPVEEEEAPTVRSTRRLERQSKRRRMPSKFMIS 228

Query: 795  DEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQ 974
            D  S  +T  R   +   D +DPLRLFL G E  QLLTAKEE EL ++VQ+L RLE++K 
Sbjct: 229  DTYSLRKTNVRKKVSGSYDPNDPLRLFLRGPETTQLLTAKEESELIVEVQDLMRLEKLKS 288

Query: 975  RLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGM 1154
             LQSQF REPT+VEWAEA+G+SC+ LQ  LH+G+RSREK++Y+NFRMV HVAK YQG+GM
Sbjct: 289  NLQSQFGREPTLVEWAEAIGLSCSALQAELHNGNRSREKLVYANFRMVFHVAKQYQGRGM 348

Query: 1155 NLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNA 1334
            NLQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ 
Sbjct: 349  NLQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSL 408

Query: 1335 LRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTF 1511
            L +V  AK   I+EG H P+ EE+A + G TV KL++LL TT+TPLSMQ+P+W+DQ TTF
Sbjct: 409  LGKVVKAKRSYIQEGNHCPSKEELATRAGITVQKLDKLLFTTRTPLSMQQPVWTDQDTTF 468

Query: 1512 QAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDV 1691
            Q VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++
Sbjct: 469  QEVTPDTGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNI 528

Query: 1692 FGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            FGLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 529  FGLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 563


>XP_015898520.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Ziziphus
            jujuba]
          Length = 567

 Score =  543 bits (1399), Expect = 0.0
 Identities = 303/571 (53%), Positives = 401/571 (70%), Gaps = 11/571 (1%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA-----HPLSVAVL--HEXXXXXXXXXXXXXXXRHFPA 275
            MEA R+LLSS P  P +   RN+      P S +VL  +E               R F  
Sbjct: 3    MEAARSLLSSSPSFPPRTHFRNSLSSASSPASTSVLMFNEQIASTVSSVPAASMARRFST 62

Query: 276  SVL-QEQRDDLRSLLHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQ 452
            SV+ QEQ D+ +SLL  R EK +QA LDR Q+D    ++++K  H  +S+ + L DFERQ
Sbjct: 63   SVVSQEQGDEFKSLL--RVEKANQAMLDRRQVDTGNLVHEDK--HFGDSN-QLLLDFERQ 117

Query: 453  LLYSPGLWYLSAPSQRE-NKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAAS 629
            LL+  G W+L    Q + N + SL +    + A + + V+  D++ALAK+A+  SK+AAS
Sbjct: 118  LLHWTGFWHLLPSLQTKVNSSTSLTVDPSKAGAKKHMDVELCDVVALAKEALSASKEAAS 177

Query: 630  LIVDSNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISS 809
            L+ +S     ++D+   S GM +    +KEK VRSTRLLER+SKKR+ PKS +L  E  +
Sbjct: 178  LVEESKIIEADSDDS-HSLGMANFLG-DKEKTVRSTRLLERRSKKRKVPKSKVLFHENHT 235

Query: 810  LRTTD-RHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQS 986
             R  D R       + +DPLRLFL G E +Q+LT +EE +L +QVQ+L +LE+VK R QS
Sbjct: 236  SRGADVRKRLNEGFNPNDPLRLFLGGPEMKQVLTFEEESQLIVQVQDLLKLEQVKTRFQS 295

Query: 987  QFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQD 1166
            QF REPT+VEWAEA G+SCA LQ  L SG R REK+IY+N RMVVH+AK YQG+G+ LQD
Sbjct: 296  QFGREPTLVEWAEAGGLSCAMLQSQLRSGTRGREKLIYANLRMVVHIAKQYQGRGVGLQD 355

Query: 1167 LLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQV 1346
            LLQEGS+GL+KS+EKFKP  GCRF+TYAYWWIRQ +RKAIF HS++IRLPENVY  L +V
Sbjct: 356  LLQEGSRGLMKSVEKFKPQVGCRFATYAYWWIRQKIRKAIFQHSRTIRLPENVYTQLAKV 415

Query: 1347 KNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVT 1523
             +AK + I+EG H P+ E++AK+VG TV KLE+LL TT+ PLSMQ+ +W+DQ TTFQ +T
Sbjct: 416  LDAKRLYIQEGNHYPSKEDLAKRVGITVEKLEKLLFTTRMPLSMQQRVWADQDTTFQEIT 475

Query: 1524 ADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLS 1703
            AD  +E P+  V+K LMR+HVRNLLS+L  +E++IIRLR+GIE G  KSL++IG+++GLS
Sbjct: 476  ADTGIEIPDVSVAKQLMRKHVRNLLSILGQRERQIIRLRFGIEGGNHKSLSEIGNIYGLS 535

Query: 1704 KERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            KERVRQ+E+RAL KLR CL S GL+AY +LL
Sbjct: 536  KERVRQIESRALYKLRQCLGSHGLDAYADLL 566


>XP_011018728.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] XP_011018729.1 PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] XP_011018730.1 PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica]
          Length = 570

 Score =  542 bits (1397), Expect = 0.0
 Identities = 300/576 (52%), Positives = 400/576 (69%), Gaps = 16/576 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQ 293
            MEAGR LLSS P  P++  L+N+   SV +L E               +HFP SVL QEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQ 60

Query: 294  RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEH----------GSESSDKYLKD 440
            RD+ R L ++ +E++P QA LDR + +  TS ++ K              S+  D+ +++
Sbjct: 61   RDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDEIGTSGHEGKDSDELDQMVEN 120

Query: 441  FERQLLYSPGLWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSK 617
            FE QL + P  W L  PSQ+ +N ++S   QS++   D+ + V+  D++ LAK+A+  SK
Sbjct: 121  FEYQLHHWPTYWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASK 180

Query: 618  QAASLIVDSNSHLPN-ADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLG 794
             AA L  D+++ L N A     SF + ++      +IVRS R L RQS  RR PK+  + 
Sbjct: 181  HAAFL-ADNSTDLDNLASTSSSSFSLEEV------RIVRSRRHLARQSLNRRVPKTKDMI 233

Query: 795  DEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVK 971
             E    ++ D   + S   D +DPLRLFL G E +QLLTAKEE EL  Q+Q+L  LE VK
Sbjct: 234  FETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVK 293

Query: 972  QRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKG 1151
             RL+SQF REPT+VEWA+AVG+SC+ L+L LHSG+RSREK+I +N RMVVH+AK YQ +G
Sbjct: 294  NRLESQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRG 353

Query: 1152 MNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYN 1331
            + LQDLLQEG+ GL+KS+EKFKP AGCRF+TYAYWWIRQ++ KAIF HS++IRLPENVY 
Sbjct: 354  LGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYG 413

Query: 1332 ALRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATT 1508
             L +V  AK   I+EG HQPT EEIA++VG  + KLE+LL  T+TPLSMQ+ +WSDQ TT
Sbjct: 414  LLGKVMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTT 473

Query: 1509 FQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGD 1688
            FQ +TAD ++E P+  V+K LMR+H+R LL++L  KE+RIIRLR+GIEDG+QKSL++IG+
Sbjct: 474  FQEITADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGN 533

Query: 1689 VFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            VFGLSKERVRQLE+RAL KL+ C+ S GL+AY +LL
Sbjct: 534  VFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 569


>XP_016723150.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Gossypium hirsutum]
          Length = 562

 Score =  541 bits (1395), Expect = 0.0
 Identities = 300/574 (52%), Positives = 395/574 (68%), Gaps = 14/574 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXX-RHFPASV 281
            MEA R  LS PP   ++ QL+N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARKFLSLPPSFSTRTQLKNSVSSSPSSSVSMFHEQAAAAAATSIPINSVARHFPTSV 60

Query: 282  L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 449
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++EK  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN----------NFEQ 110

Query: 450  QLLYSPGLWYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAAS 629
            Q+L  P L  LS     EN + SL MQS+++D +E ++V+   +LALAK A+  SKQA +
Sbjct: 111  QMLQWPDL-RLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSASKQALA 169

Query: 630  LIVDSNSHLPNADELIPSFGM-NDISPPEKEK---IVRSTRLLERQSKKRRAPKSALLGD 797
            L  D    L   D +  S G  N  + P +E     VRSTR LERQSK+RR P   ++ +
Sbjct: 170  LAEDLKLDLD--DSISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSKFMISE 227

Query: 798  EISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQR 977
              SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL +QVQ+L RLE++K +
Sbjct: 228  TYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESELIVQVQDLMRLEKLKSK 287

Query: 978  LQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMN 1157
            LQSQF  EPT+VEWAEA+G+SC+ LQ  +H+G+RSREK++Y+NFRMVVHVAK YQG+GMN
Sbjct: 288  LQSQFGCEPTLVEWAEAIGLSCSALQAEIHNGNRSREKLVYANFRMVVHVAKQYQGRGMN 347

Query: 1158 LQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNAL 1337
            LQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ L
Sbjct: 348  LQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSLL 407

Query: 1338 RQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQ 1514
             +V  AK   I+EG H P+ EE+A +VG TV KL++ L TT+TPLSMQ+P+W+DQ TTFQ
Sbjct: 408  GKVVKAKRSYIREGNHCPSKEELATRVGITVQKLDKFLFTTRTPLSMQQPVWTDQDTTFQ 467

Query: 1515 AVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVF 1694
             VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++F
Sbjct: 468  EVTPDSGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNIF 527

Query: 1695 GLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            GLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 528  GLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 561


>XP_016723149.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Gossypium hirsutum]
          Length = 564

 Score =  541 bits (1394), Expect = 0.0
 Identities = 300/575 (52%), Positives = 395/575 (68%), Gaps = 15/575 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXX-RHFPASV 281
            MEA R  LS PP   ++ QL+N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARKFLSLPPSFSTRTQLKNSVSSSPSSSVSMFHEQAAAAAATSIPINSVARHFPTSV 60

Query: 282  L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 449
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++EK  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN----------NFEQ 110

Query: 450  QLLYSPGL-WYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAA 626
            Q+L  P L   LS     EN + SL MQS+++D +E ++V+   +LALAK A+  SKQA 
Sbjct: 111  QMLQWPDLRQLLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSASKQAL 170

Query: 627  SLIVDSNSHLPNADELIPSFGM-NDISPPEKEK---IVRSTRLLERQSKKRRAPKSALLG 794
            +L  D    L   D +  S G  N  + P +E     VRSTR LERQSK+RR P   ++ 
Sbjct: 171  ALAEDLKLDLD--DSISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSKFMIS 228

Query: 795  DEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQ 974
            +  SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL +QVQ+L RLE++K 
Sbjct: 229  ETYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESELIVQVQDLMRLEKLKS 288

Query: 975  RLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGM 1154
            +LQSQF  EPT+VEWAEA+G+SC+ LQ  +H+G+RSREK++Y+NFRMVVHVAK YQG+GM
Sbjct: 289  KLQSQFGCEPTLVEWAEAIGLSCSALQAEIHNGNRSREKLVYANFRMVVHVAKQYQGRGM 348

Query: 1155 NLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNA 1334
            NLQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ 
Sbjct: 349  NLQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSL 408

Query: 1335 LRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTF 1511
            L +V  AK   I+EG H P+ EE+A +VG TV KL++ L TT+TPLSMQ+P+W+DQ TTF
Sbjct: 409  LGKVVKAKRSYIREGNHCPSKEELATRVGITVQKLDKFLFTTRTPLSMQQPVWTDQDTTF 468

Query: 1512 QAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDV 1691
            Q VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++
Sbjct: 469  QEVTPDSGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNI 528

Query: 1692 FGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            FGLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 529  FGLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 563


>XP_017603238.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Gossypium arboreum]
          Length = 562

 Score =  540 bits (1391), Expect = 0.0
 Identities = 299/574 (52%), Positives = 394/574 (68%), Gaps = 14/574 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXX-RHFPASV 281
            MEA R  LS PP   ++ Q +N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARKFLSLPPSFSTRTQFKNSVSSSPSSSVSMFHEQAAAAAATSIPINSVARHFPTSV 60

Query: 282  L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 449
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++EK  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN----------NFEQ 110

Query: 450  QLLYSPGLWYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAAS 629
            Q+L  P L  LS     EN + SL MQS+++D +E ++V+   +LALAK A+  SKQA +
Sbjct: 111  QMLQWPDL-RLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSASKQALA 169

Query: 630  LIVDSNSHLPNADELIPSFGM-NDISPPEKEK---IVRSTRLLERQSKKRRAPKSALLGD 797
            L  D    L   D +  S G  N  + P +E     VRSTR LERQSK+RR P   ++ +
Sbjct: 170  LAEDLKLDLD--DSISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSKFMISE 227

Query: 798  EISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQR 977
              SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL +QVQ+L RLE++K +
Sbjct: 228  TYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESELIVQVQDLMRLEKLKSK 287

Query: 978  LQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMN 1157
            LQSQF  EPT+VEWAEA+G+SC+ LQ  +H+G+RSREK++Y+NFRMVVHVAK YQG+GMN
Sbjct: 288  LQSQFGCEPTLVEWAEAIGLSCSALQAEIHNGNRSREKLVYANFRMVVHVAKQYQGRGMN 347

Query: 1158 LQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNAL 1337
            LQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ L
Sbjct: 348  LQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSLL 407

Query: 1338 RQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQ 1514
             +V  AK   I+EG H P+ EE+A +VG TV KL++ L TT+TPLSMQ+P+W+DQ TTFQ
Sbjct: 408  GKVVKAKRSYIREGNHCPSKEELATRVGITVQKLDKFLFTTRTPLSMQQPVWTDQDTTFQ 467

Query: 1515 AVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVF 1694
             VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++F
Sbjct: 468  EVTPDSGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNIF 527

Query: 1695 GLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            GLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 528  GLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 561


>XP_017603237.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Gossypium arboreum]
          Length = 564

 Score =  540 bits (1390), Expect = 0.0
 Identities = 299/575 (52%), Positives = 394/575 (68%), Gaps = 15/575 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXX-RHFPASV 281
            MEA R  LS PP   ++ Q +N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARKFLSLPPSFSTRTQFKNSVSSSPSSSVSMFHEQAAAAAATSIPINSVARHFPTSV 60

Query: 282  L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 449
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++EK  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN----------NFEQ 110

Query: 450  QLLYSPGL-WYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAA 626
            Q+L  P L   LS     EN + SL MQS+++D +E ++V+   +LALAK A+  SKQA 
Sbjct: 111  QMLQWPDLRQLLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSASKQAL 170

Query: 627  SLIVDSNSHLPNADELIPSFGM-NDISPPEKEK---IVRSTRLLERQSKKRRAPKSALLG 794
            +L  D    L   D +  S G  N  + P +E     VRSTR LERQSK+RR P   ++ 
Sbjct: 171  ALAEDLKLDLD--DSISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSKFMIS 228

Query: 795  DEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQ 974
            +  SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL +QVQ+L RLE++K 
Sbjct: 229  ETYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESELIVQVQDLMRLEKLKS 288

Query: 975  RLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGM 1154
            +LQSQF  EPT+VEWAEA+G+SC+ LQ  +H+G+RSREK++Y+NFRMVVHVAK YQG+GM
Sbjct: 289  KLQSQFGCEPTLVEWAEAIGLSCSALQAEIHNGNRSREKLVYANFRMVVHVAKQYQGRGM 348

Query: 1155 NLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNA 1334
            NLQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ 
Sbjct: 349  NLQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSL 408

Query: 1335 LRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTF 1511
            L +V  AK   I+EG H P+ EE+A +VG TV KL++ L TT+TPLSMQ+P+W+DQ TTF
Sbjct: 409  LGKVVKAKRSYIREGNHCPSKEELATRVGITVQKLDKFLFTTRTPLSMQQPVWTDQDTTF 468

Query: 1512 QAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDV 1691
            Q VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++
Sbjct: 469  QEVTPDSGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNI 528

Query: 1692 FGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            FGLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 529  FGLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 563


>KHG01807.1 RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 564

 Score =  537 bits (1383), Expect = 0.0
 Identities = 298/575 (51%), Positives = 393/575 (68%), Gaps = 15/575 (2%)
 Frame = +3

Query: 117  MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXX-RHFPASV 281
            MEA R  LS PP   ++ Q +N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARKFLSLPPSFSTRTQFKNSVSSSPSSSVSMFHEQAAAAAATSIPINSVARHFPTSV 60

Query: 282  L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 449
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++EK  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN----------NFEQ 110

Query: 450  QLLYSPGL-WYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAA 626
            Q+L  P L   LS     EN + SL MQS+++D +E ++V+   +LALAK A+  SKQA 
Sbjct: 111  QMLQWPDLRQLLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSASKQAL 170

Query: 627  SLIVDSNSHLPNADELIPSFGM-NDISPPEKEK---IVRSTRLLERQSKKRRAPKSALLG 794
            +L  D    L   D +  S G  N  + P +E     VRSTR LERQSK+RR P   ++ 
Sbjct: 171  ALAEDLKLDLD--DSISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSKFMIS 228

Query: 795  DEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQ 974
            +  SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL +QVQ+L RLE++K 
Sbjct: 229  ETYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESELIVQVQDLMRLEKLKS 288

Query: 975  RLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGM 1154
            +LQSQF  EPT+VEWAEA+G+SC+ LQ  +H+G+RSREK++Y+NFRMVVHVAK YQG+GM
Sbjct: 289  KLQSQFGCEPTLVEWAEAIGLSCSALQAEIHNGNRSREKLVYANFRMVVHVAKQYQGRGM 348

Query: 1155 NLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNA 1334
            N QDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ 
Sbjct: 349  NFQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSL 408

Query: 1335 LRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTF 1511
            L +V  AK   I+EG H P+ EE+A +VG TV KL++ L TT+TPLSMQ+P+W+DQ TTF
Sbjct: 409  LGKVVKAKRSYIREGNHCPSKEELATRVGITVQKLDKFLFTTRTPLSMQQPVWTDQDTTF 468

Query: 1512 QAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDV 1691
            Q VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++
Sbjct: 469  QEVTPDSGIEIPDVCVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNI 528

Query: 1692 FGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 1796
            FGLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 529  FGLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 563