BLASTX nr result
ID: Papaver32_contig00001959
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver32_contig00001959
(4050 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 1257 0.0
AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-clas... 1206 0.0
AAT85194.1 putative polyprotein [Oryza sativa Japonica Group] 1183 0.0
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 1181 0.0
ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass... 1132 0.0
ABA98804.1 retrotransposon protein, putative, Ty1-copia subclass... 1131 0.0
ACL97384.1 Gag-Pol polyprotein [Medicago truncatula] 1131 0.0
AAR87163.1 putative polyprotein [Oryza sativa Japonica Group] AA... 1129 0.0
CAH66122.1 OSIGBa0146N20.7 [Oryza sativa Indica Group] 1129 0.0
ACL97383.1 Gag-Pol polyprotein [Medicago truncatula] 1127 0.0
KYP42748.1 Retrovirus-related Pol polyprotein from transposon TN... 1123 0.0
KYP53032.1 Retrovirus-related Pol polyprotein from transposon TN... 1122 0.0
ACL97386.1 Gag-Pol polyprotein [Medicago truncatula] 1120 0.0
ACL97385.1 Gag-Pol polyprotein [Medicago truncatula] 1119 0.0
AFB73911.1 polyprotein [Citrus sinensis] 1117 0.0
KYP47640.1 Retrovirus-related Pol polyprotein from transposon TN... 1114 0.0
AFB73912.1 polyprotein [Citrus sinensis] 1113 0.0
AAP54315.2 retrotransposon protein, putative, Ty1-copia subclass... 1109 0.0
KYP67664.1 Retrovirus-related Pol polyprotein from transposon TN... 1105 0.0
KYP36645.1 Retrovirus-related Pol polyprotein from transposon TN... 1103 0.0
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 1257 bits (3252), Expect = 0.0
Identities = 656/1302 (50%), Positives = 871/1302 (66%), Gaps = 20/1302 (1%)
Frame = +2
Query: 101 ADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRM 280
A L+ A STI LCL+ D+ S E +A LW KLE LY+ K LT++L LK+RL RM
Sbjct: 50 AILEEKAHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRM 109
Query: 281 SPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGE 460
+ G + +H+ + N + +L NI V I D D ++ILL SLP S++ FV + GK
Sbjct: 110 AEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGK----- 164
Query: 461 DKDKLVFDDVVSALQAKALRKQE--FSDEAQVEGLFVDXXXXXXXXXXXXXXXXXX---D 625
D + ++V SAL ++ LR + S + Q GLF D
Sbjct: 165 --DTVSLEEVRSALHSRELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPD 222
Query: 626 IECYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVT 805
C YC++ GH + DC K K+++S+ ++V A+VAE E+ + L
Sbjct: 223 DVCNYCKEKGHWKFDCPK------KKKQSEKQSVSAAVAEEDTNSEEDIA------LVAD 270
Query: 806 SKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-G 982
++ +D W+LDSGASYH+CP ++ FTTY +V+GG++ M NS+ CK VG G++++R+H G
Sbjct: 271 EHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDG 330
Query: 983 VITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHGNLYFLR 1162
TL+EVRHVP + K+LISL +L+S G+ ++ + G L+V+ +L + G G LYFL+
Sbjct: 331 SFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQ 390
Query: 1163 GDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHC 1342
G V G A V+ S + Q + T+LWH+RLGHM E+GM +LS + LL G K L+FCEHC
Sbjct: 391 GSTVTGSAHVASS-EFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHC 449
Query: 1343 IFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMK 1522
+FGK R+ F A+H T+G LDYIHSD WGP R S GG R+FV+ IDD+SR W+Y MK
Sbjct: 450 VFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMK 509
Query: 1523 HKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQ 1702
HK+E + FK+WK ++E Q G+ +K++R+DNG E+ +FC+++GI RH TV+ TPQ
Sbjct: 510 HKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQ 569
Query: 1703 QNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTG 1882
QNGVAERMN+TLLERARCMLSNA LD+ +WAEAV+TACYL+NR P T I+CK+PME+W+G
Sbjct: 570 QNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSG 629
Query: 1883 NLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVT 2062
+YSNL+ FGC AY+HV E KL RAKK +F+GY GVKG+R+W P + I+SR+V
Sbjct: 630 KAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVV 689
Query: 2063 FNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXX 2242
F+E +L + S+ QVE +V + +
Sbjct: 690 FDESPLLRTIVKPTTTSETGSLDK--------QVEFQVIQNES---------DLKEPEEE 732
Query: 2243 XXXXSTQQQI-ENIPS-----LTSQRERR----PPTRYGFDEYASYALSVFED----EPF 2380
T+ I E++PS + R RR PPTRYGF++ YAL V E+ EP
Sbjct: 733 DQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPS 792
Query: 2381 TFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKG 2560
T++EA+ ++ + +W AM +EM+SLHKN TW+LV P GRK I CKWV+ K+GI ++G
Sbjct: 793 TYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEG 852
Query: 2561 IVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAF 2740
V+YKAR+VA+G+ QREGVDYNE+FSPVV+HTSIRVLLA VA +LELEQLDVKTAF
Sbjct: 853 ----VKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAF 908
Query: 2741 LHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSK 2920
LHG LEE+IYM+QP G++V GKE++VC+L+KSLYGLKQSPRQWYKRFD++M++ YTRS
Sbjct: 909 LHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSS 968
Query: 2921 YDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGM 3100
YD CVY+ + SF+YL+LYVDDMLIAAK K +I LK LS EFEMKDLG A+KILGM
Sbjct: 969 YDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGM 1028
Query: 3101 EITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMS 3280
EI RDR + KL L+Q+SY++KVL RFGM +SK I P + + L+ P + EE E+MS
Sbjct: 1029 EIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMS 1088
Query: 3281 KVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLV 3460
+VPYA+AVGSLMYAMVCTRPD A AV +VSR+M PGR HW AVK I RYL GT D+GL+
Sbjct: 1089 RVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLI 1148
Query: 3461 FEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIA 3640
+ + V G+ DSDYAGD D RS +GY FTL G+ +SW++ LQP V LSTTEAEY+A
Sbjct: 1149 YGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMA 1208
Query: 3641 VTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREV 3820
+TEA KE +WL+GLV DLG+ V CDS SAI LAK+QV+H RTKHID+RYH +R
Sbjct: 1209 LTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR-- 1266
Query: 3821 VDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLINTARC 3946
+++ KV T DNPADM TK VP+ KF+ CL L+N C
Sbjct: 1267 -SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNIRSC 1307
>AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] ABA91548.1 retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 2340
Score = 1206 bits (3120), Expect = 0.0
Identities = 649/1308 (49%), Positives = 842/1308 (64%), Gaps = 24/1308 (1%)
Frame = +2
Query: 80 DWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKR 259
DW++++ D A S I L LS +I E A LW KLE++ + KDLTS+++LK+
Sbjct: 253 DWSNDE-KKRDRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQ 311
Query: 260 RLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLS 439
L ++ S+MDH++ F +I +DL ++ V + D +ILLCSLP SY F D +L
Sbjct: 312 TLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILY 371
Query: 440 GKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDE---AQVEGLFVDXXXXXXXXXXXXXX 610
+ D L +V AL K K+ E +Q EGL V
Sbjct: 372 SR-------DTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRD 424
Query: 611 XXXXDIE-----------CYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEA 757
C YC++ GH +C KL +D++ K K EG A
Sbjct: 425 KSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKG--KKEEEGKAA 482
Query: 758 LEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNA 937
+ E ++ + +D W+L++ YHMCP++D F TY V GTV+MG+
Sbjct: 483 VVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTP 542
Query: 938 CKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNG 1114
C+ G+GTVQ++ G I TLS+VRH+P+L++SLISL L+ GYKY+ G LKV
Sbjct: 543 CEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGS 602
Query: 1115 SLKMTGE-RHGNLYFLRGDIVCGG-AMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSS 1288
+ M + + NLY LRG + G A VS S+ ++T LWHMRLGHM+E G++ LS
Sbjct: 603 LVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRLGHMTEIGLAELSK 660
Query: 1289 KGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARW 1468
+GLL G+ KL FCEHCIFGK R F T+ H T+G+LDY+HSD+WGP+R S GG R+
Sbjct: 661 RGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRY 720
Query: 1469 FVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKE 1648
+T +DD+SR+VW Y +KHK + +VFK+WKTMVE+Q R VK +R+DNG E+ K
Sbjct: 721 MMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKS 780
Query: 1649 FCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVN 1828
+C+ +GIVRH+TV TPQQNGVAERMNRT++ +ARC+LSNA L K +WAEAV+TACYL+N
Sbjct: 781 YCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLIN 840
Query: 1829 RSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKG 2008
RSPS AI K+P+EVW+G+ NYS+LRVFGC AY HV KL RA K IFLGYP GVKG
Sbjct: 841 RSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKG 900
Query: 2009 YRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPSSS 2188
Y+LWCPE K +ISR+V F+E ML K T+ + +QVE + S
Sbjct: 901 YKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVE-------SQEKASVQVEHLISSGH 953
Query: 2189 TIXXXXXXXXXXXXXXXXXXXXSTQQQIE-NIPSLTSQRERRPPTRYGFD-EYASYALSV 2362
QQ + +I +R +PP RY + +YALSV
Sbjct: 954 APEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSV 1013
Query: 2363 FED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVY 2527
E+ EP T+ EA+ + W TAM +EM+SL KNHTWELVKLPK +K I CKW++
Sbjct: 1014 AEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIF 1073
Query: 2528 TVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDL 2707
K+GI S RYKARL+AKGY+Q G+D+N+VFSPVVKH+SIR LL+ VA D
Sbjct: 1074 KRKEGISSS----DEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDY 1129
Query: 2708 ELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDT 2887
ELEQ+DVKTAFLHG LEEDIYM QP G+ V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+
Sbjct: 1130 ELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDS 1189
Query: 2888 FMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMK 3067
FML QK+ RS YD CVY K G S +YLLLYVDDMLIAAK KSEI LK QLS EFEMK
Sbjct: 1190 FMLSQKFRRSNYDSCVYLKVVDG-SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMK 1248
Query: 3068 DLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLC 3247
DLG AKKILGMEITR R KL L+QK Y+EKVLRRF MH++K +S P+ + +LS LC
Sbjct: 1249 DLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLC 1308
Query: 3248 PTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILR 3427
P + ++E+MS+VPY++AVGSLMYAMVC+RPD + A+ +VSRYMANPG+ HW AV+ I R
Sbjct: 1309 PQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFR 1368
Query: 3428 YLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIV 3607
YL GT L F + + + G+VDSD+AGD D+ RS +GY FT+ G +SW++ LQ V
Sbjct: 1369 YLRGTSSACLQFGRSRD-GLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATV 1427
Query: 3608 ALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKH 3787
ALSTTEAEY+A++EA KEA+WLRGL L + + + CDSQSAI L K+Q++H RTKH
Sbjct: 1428 ALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKH 1487
Query: 3788 IDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3931
ID+RYH +R ++ G V++ K+ DNPADM+TK VP KFE C SL+
Sbjct: 1488 IDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLV 1535
>AAT85194.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 1183 bits (3061), Expect = 0.0
Identities = 632/1261 (50%), Positives = 820/1261 (65%), Gaps = 24/1261 (1%)
Frame = +2
Query: 221 LQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSL 400
+ KDLTS+++LK++L ++ S+MDH++ F +I +DL ++ V + D +ILLCSL
Sbjct: 1 MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60
Query: 401 PPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDE---AQVEGLFVDX 571
P SY F D +L + D L +V AL AK K+ E +Q EGL V
Sbjct: 61 PSSYANFRDTILYSR-------DTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 113
Query: 572 XXXXXXXXXXXXXXXXXDIE-----------CYYCRKPGHIRADCLKLKARDEKREKSDS 718
C YC++ GH ++C KL+ +D++ K
Sbjct: 114 RQQEKNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIP 173
Query: 719 KNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYRE 898
K EG A+ E ++ + +D W+LD+ +YHMCP++D F TY
Sbjct: 174 KG--KKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEA 231
Query: 899 VNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKY 1075
V GGTV+MG+ C+ G+GTVQ++ G I TL +VRH+P+L++SLISL L+ GYKY
Sbjct: 232 VQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKY 291
Query: 1076 AAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGDIVCGG-AMVSQSIDEKQVESTRLWHMRL 1249
+ G LKV + M + ++ NLY LRG + G A VS S+ ++T LWHMRL
Sbjct: 292 SGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRL 349
Query: 1250 GHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVW 1429
GHMSE G++ LS +GLL G+ KL FCEHCIFGK R F T+ H T+G+LDY+HSD+W
Sbjct: 350 GHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 409
Query: 1430 GPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRS 1609
GP+R S GGAR+ +T +DD+SR+VW Y +KHK + +VFK+WKTMVE+Q R VK +R+
Sbjct: 410 GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 469
Query: 1610 DNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIW 1789
DNG E K +C+ +GIVRH+TV TPQQNGVAERMNRT++ +ARCMLSNASL K +
Sbjct: 470 DNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQF 529
Query: 1790 WAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAK 1969
WAEAV+TACYL+NRSPS AI K+P+EVW+G+ NYS+LRVFGC AY HV KL R
Sbjct: 530 WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVI 589
Query: 1970 KAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQIXXXXXXXXXX 2149
K IFLGY GVKGY+LWCPE K +ISR+V F+E ML K T+
Sbjct: 590 KCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTN-------VPVESQEK 642
Query: 2150 XXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIE-NIPSLTSQRERRPPTRY 2326
+QVE + S QQ + +I +R +PP RY
Sbjct: 643 VSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRY 702
Query: 2327 GFD-EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKL 2488
+ +YALSV E+ EP T+ +A+ + W TAM +EM+SL KNH+WEL KL
Sbjct: 703 IEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKL 762
Query: 2489 PKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTS 2668
PK +K I CKW++ K+G+ S RYKARLVAKGY+Q G+D+N+VFSPVVKH+S
Sbjct: 763 PKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSS 818
Query: 2669 IRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGL 2848
IR LL+ VA D ELEQ+DVKTAFLHG LEEDIYM QP G+ V GKE+ VCRL+KSLYGL
Sbjct: 819 IRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGL 878
Query: 2849 KQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEID 3028
KQSPRQWYKRFD+FML QK+ RS YD CVY K GS +YLLLYVDDMLIAAK KSEI
Sbjct: 879 KQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIA 937
Query: 3029 VLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISV 3208
LK QLS EFEMKDLG AKKILGMEITR+R GKL L+QK Y+EKVL RF MH++K +S
Sbjct: 938 KLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVST 997
Query: 3209 PIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANP 3388
+ + +LS LCP + ++E+MS+VPY++AV SLMYAMVC+RPD + A+ +VSRYMANP
Sbjct: 998 LLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANP 1057
Query: 3389 GRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSG 3568
G+ HW AV+ I RYL GT L F + S + G+VDSD+AGD D+ RS +GY FT+ G
Sbjct: 1058 GKEHWKAVQWIFRYLRGTSSACLQFGR-SSDGLVGYVDSDFAGDLDRRRSLTGYVFTVGG 1116
Query: 3569 APISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIH 3748
+SW++ LQ VALSTTEAEY+A++EA KE +WLRGL +L + + + CDSQSAI
Sbjct: 1117 CAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAIC 1176
Query: 3749 LAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSL 3928
L K+Q++H RTKHID+RYH +R V+ G V++ K+ T DNP DM+TK VP KFE C SL
Sbjct: 1177 LTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSL 1236
Query: 3929 I 3931
+
Sbjct: 1237 V 1237
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 1181 bits (3055), Expect = 0.0
Identities = 597/1041 (57%), Positives = 745/1041 (71%), Gaps = 17/1041 (1%)
Frame = +2
Query: 860 MCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSL 1036
MCP KD FTT V+ G V+MGN CK G+GT+Q+++H G I TLS VR +PDL+++L
Sbjct: 1 MCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNL 60
Query: 1037 ISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHGNLYFLRGDIVCGGAMVSQSIDEKQ 1216
ISLG LESLG KY+AE G LKV + + R G+LY L+G IV G A VS S+ +K
Sbjct: 61 ISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDK- 119
Query: 1217 VESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQ 1396
++T+LWHMRLGHMSEKGM +LS +GLLG + KL+FCEHC+FGKQ R SF TA H T+
Sbjct: 120 -DATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTK 178
Query: 1397 GMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEK 1576
G LDYIHSD+WGPS+ S GG R+ +T IDDFSR+VW+Y ++HKNE FKKWKT+VE
Sbjct: 179 GTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVET 238
Query: 1577 QLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARC 1756
Q G+ VKK+R+DNG E+ E EFC GI RH T+ G PQQNGVAER+NRT+LERARC
Sbjct: 239 QTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTILERARC 298
Query: 1757 MLSNASL--DKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAY 1930
MLSNA L + W EA +TACYL+NRSP +++ K P E+W+GN ++YSNLR+FGCPAY
Sbjct: 299 MLSNAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPIDYSNLRIFGCPAY 358
Query: 1931 FHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELN--KFIISRDVTFNERAMLDSKKFTD 2104
HV + KL RA K IFLGY KGYRLWC E + I+SRDVTFNE A+L S K +
Sbjct: 359 AHVNDGKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILSRDVTFNEDALLSSGKQSS 418
Query: 2105 WDSQIXXXXXXXXXXXXMQVEQ-----RVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQ 2269
S ++++ VPSSST QQ+
Sbjct: 419 VSSSSTNNLQGTSEKVELELKSVAPNVDVPSSSTTESSIDDHGDDHPIQ--------QQE 470
Query: 2270 IENIPSLTSQRERRPPTRYGFDEYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAM 2434
NI ++R+ + P RY D +YALS+ ++ EP ++ EA+S + +W AM
Sbjct: 471 EYNIARDRTRRQIKLPARYTDDNLTAYALSIAQEVNDDVEPASYSEAVSCVDSAKWLVAM 530
Query: 2435 DEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQ 2614
+EE++SLHKN+TW L KLPKG++ + CKW+Y KDGIP V R KARLV KG+ Q
Sbjct: 531 NEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPG----VEDPRCKARLVVKGFYQ 586
Query: 2615 REGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYE 2794
+EG+D+NE+FSPVV+HTSIR+LLAFVA FDLELEQLDVKTAFLHG LEE+IYM QP G+
Sbjct: 587 KEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFV 646
Query: 2795 VAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYL 2974
V KE VC+L+KSLYGLKQ+PRQWYK+FD+FM+ Q Y+RSKYD C+YF++FP G+F+YL
Sbjct: 647 VPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYL 706
Query: 2975 LLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSY 3154
LLYVDDMLIA++ KS I LK QL+ EFEMK+LG AKKILGMEI RDR GKL L+Q+ Y
Sbjct: 707 LLYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKY 766
Query: 3155 LEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCT 3334
+E++L RF M+N K +S P+ + KLS LCP T EEME MS VPYA+AVGSLMYAMVCT
Sbjct: 767 IERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCT 826
Query: 3335 RPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSL--KVCGFVDSD 3508
RPD A AV +VSRYM NPG+ HW AVK I RYL GT +IGLVF++ ++ V GFVDSD
Sbjct: 827 RPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSD 886
Query: 3509 YAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVK 3688
Y GD D+ RS SGY FTL + ISW++ LQ I ALSTTEAEY++ TE VKEALW+RGLVK
Sbjct: 887 YGGDLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVK 946
Query: 3689 DLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDN 3868
+LG+ Q + V CDSQSAIHL KN YH +TKHID+++H +R++V G V L KV T +N
Sbjct: 947 ELGLTQDVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSEN 1006
Query: 3869 PADMLTKVVPKVKFERCLSLI 3931
PADMLTK +P KF+ CL L+
Sbjct: 1007 PADMLTKPLPNAKFQHCLGLV 1027
>ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 1132 bits (2929), Expect = 0.0
Identities = 619/1318 (46%), Positives = 823/1318 (62%), Gaps = 34/1318 (2%)
Frame = +2
Query: 80 DWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKR 259
+WT E+ D A + I+L L DI E ++ LW KLE + + KDLTS++ +K
Sbjct: 44 EWTAEEIRK-DQKALALIQLHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKM 102
Query: 260 RLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLS 439
+L +M S++ H+ EF KI +DL ++ V D D ++LLCSLP SY F D +L
Sbjct: 103 KLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL 162
Query: 440 GKTDEGEDKDKLVFDDVVSALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXX 607
+ D+L +V ALQ K K + S ++ E L V
Sbjct: 163 SR-------DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNY 215
Query: 608 XXXXXDIE--------CYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALE 763
C YC+ H +C K++A+ E++ K D K VAS A +
Sbjct: 216 DRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSG 274
Query: 764 DPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNAC 940
D + F V +D W+LDS S+H+C ++ F++Y+ V G V+ MG+ N C
Sbjct: 275 DCLVVFAGCVAG-------HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPC 327
Query: 941 KTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGS 1117
VG+G+VQ+++ G+ TL VR++P + ++LISL L++ GYKY+ G LKV
Sbjct: 328 AIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSL 387
Query: 1118 LKMTGERHG-NLYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKG 1294
+ + G+ + LY LRG + G + ++ + T LWHMRLGHMS GM+ L +
Sbjct: 388 VCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRN 447
Query: 1295 LLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFV 1474
LL G + K+ FCEHCIFGK R F T+VH T+G LDY+H+D+WGPS+ S GGAR+ +
Sbjct: 448 LLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYML 507
Query: 1475 TFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFC 1654
T IDD+SR+VW Y +KHK++ FK WK M+E+Q R VK +R+DNGGE+ ++C
Sbjct: 508 TVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567
Query: 1655 EEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRS 1834
++GIVRH T+ TPQQNGVAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRS
Sbjct: 568 RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627
Query: 1835 PSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYR 2014
PS + K+P+EVW+G +YS L+VFGC AY HV KL RA K +FLGY GVKGY+
Sbjct: 628 PSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYK 687
Query: 2015 LWCPELNKFIISRDVTFNERAM----LDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPS 2182
LW PE K +SR V FNE M L S+ + + Q MQVE
Sbjct: 688 LWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQ----------RMHMQVEHVDDD 737
Query: 2183 SSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLT---------SQRERRPPTRYGFD 2335
+ QQ I L S+R +PP R +
Sbjct: 738 TGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEE 797
Query: 2336 -EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKG 2497
+ YALS E EP T++EA+ + W +AM EEM+SL KN TWE+V LPK
Sbjct: 798 CNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKK 857
Query: 2498 RKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRV 2677
+K I CKW++ K+G+ S+ +YKARLVA+GY+Q GVDYN+VFSPVVKH+SIR
Sbjct: 858 KKTISCKWIFKRKEGLSSSEP----PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRT 913
Query: 2678 LLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQS 2857
L+ VA DLELEQLDVKTAFLHG LEEDIYM QP G+ V GKE YVC+L++SLYGLKQS
Sbjct: 914 FLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQS 973
Query: 2858 PRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLK 3037
PRQW KRFD+FML + RSKYD CVY K GS +YLLLYVDDMLIAAKSK EI LK
Sbjct: 974 PRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLK 1032
Query: 3038 KQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIP 3217
K LS EF+MKDLG AKKILGMEI+RDR G L L+Q +Y++KVL+RF M N+KA+S PI
Sbjct: 1033 KLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIA 1092
Query: 3218 STVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRA 3397
KLS CP+ E+E+MS+VPY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+
Sbjct: 1093 PHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKE 1152
Query: 3398 HWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPI 3577
HW AV+ I RYL GT L F + + G+VDSDYA D D+ RS +GY FT+ +
Sbjct: 1153 HWRAVQWIFRYLRGTTYSCLKFGRTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAV 1211
Query: 3578 SWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAK 3757
SWR+ LQ +VALSTTEAEY+A+ EA KE +WL+GL +L ++ + ++CDSQSAI+L K
Sbjct: 1212 SWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1271
Query: 3758 NQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3931
+Q++H RTKHIDI+YH VR+V++ G +++ K+ T DNPADM+TK +P KFE C SL+
Sbjct: 1272 DQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329
>ABA98804.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 1131 bits (2926), Expect = 0.0
Identities = 618/1318 (46%), Positives = 823/1318 (62%), Gaps = 34/1318 (2%)
Frame = +2
Query: 80 DWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKR 259
+WT E+ D A + I+L L DI +E ++ LW KLE + + KDLTS++ +K
Sbjct: 44 EWTAEEIRK-DQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKM 102
Query: 260 RLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLS 439
+L +M S++ H+ EF KI +DL ++ V D D ++LLCSLP SY F D +L
Sbjct: 103 KLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL 162
Query: 440 GKTDEGEDKDKLVFDDVVSALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXX 607
+ D+L +V ALQ K K + S ++ E L V
Sbjct: 163 SR-------DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNY 215
Query: 608 XXXXXDIE--------CYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALE 763
C YC+ H +C K++A+ E++ K D K VAS A +
Sbjct: 216 DRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSG 274
Query: 764 DPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNAC 940
D + F V +D W+LDS S+H+C ++ F++Y+ V G V+ MG+ N C
Sbjct: 275 DCLVVFAGCVAG-------HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPC 327
Query: 941 KTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGS 1117
VG+G+VQ+++ G+ TL VR++P + ++LISL L++ GYKY+ G LKV
Sbjct: 328 AIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSL 387
Query: 1118 LKMTGERHG-NLYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKG 1294
+ + G+ + LY LRG + G + ++ + T LWHMRLGHMS GM+ L +
Sbjct: 388 VCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRN 447
Query: 1295 LLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFV 1474
LL G + K+ FCEHCIFGK R F T+VH T+G LDY+H+D+WGPS+ S GGAR+ +
Sbjct: 448 LLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYML 507
Query: 1475 TFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFC 1654
T IDD+SR+VW Y +KHK++ FK WK M+E+Q R VK +R+DNGGE+ ++C
Sbjct: 508 TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567
Query: 1655 EEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRS 1834
++GIVRH T+ TPQQNGVAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRS
Sbjct: 568 RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627
Query: 1835 PSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYR 2014
PS + K+P+EVW+G +YS L+VFGC AY HV KL RA K +FLGY GVKGY+
Sbjct: 628 PSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYK 687
Query: 2015 LWCPELNKFIISRDVTFNERAM----LDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPS 2182
LW PE K +SR V FNE M L S+ + + Q MQVE
Sbjct: 688 LWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQ----------RMHMQVEHVDDY 737
Query: 2183 SSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLT---------SQRERRPPTRYGFD 2335
+ QQ I L S+R +PP R +
Sbjct: 738 TGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEE 797
Query: 2336 -EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKG 2497
+ YALS E EP T++EA+ + W +AM EEM+SL KN TWE+V LPK
Sbjct: 798 CNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKK 857
Query: 2498 RKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRV 2677
+K I CKW++ K+G+ S+ +YKARLVA+GY+Q GVDYN+VFSPVVKH+SIR
Sbjct: 858 KKTISCKWIFKRKEGLSSSEP----PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRT 913
Query: 2678 LLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQS 2857
L+ VA DLELEQLDVKTAFLHG LEEDIYM QP G+ V GKE YVC+L++SLYGLKQS
Sbjct: 914 FLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQS 973
Query: 2858 PRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLK 3037
PRQW KRFD+FML + RSKYD CVY K GS +YLLLYVDDMLIAAKSK EI LK
Sbjct: 974 PRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLK 1032
Query: 3038 KQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIP 3217
K LS EF+MKDLG AKKIL MEI+RDR G L L+Q +Y++KVL+RF M N+KA+S PI
Sbjct: 1033 KLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIA 1092
Query: 3218 STVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRA 3397
KLS CP+T E+E+MS+VPY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+
Sbjct: 1093 PHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKE 1152
Query: 3398 HWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPI 3577
HW V+ I RYL GT L F + + G+VDSDYA D D+ RS +GY FT+ +
Sbjct: 1153 HWRVVQWIFRYLRGTTYSCLKFGRTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAV 1211
Query: 3578 SWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAK 3757
SWR+ LQ +VALSTTEAEY+A+ EA KE +WL+GL +L ++ + ++CDSQSAI+L K
Sbjct: 1212 SWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1271
Query: 3758 NQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3931
+Q++H RTKHIDI+YH VR+V++ G +++ K+ T DNPADM+TK +P KFE C SL+
Sbjct: 1272 DQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329
>ACL97384.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 1131 bits (2925), Expect = 0.0
Identities = 614/1324 (46%), Positives = 832/1324 (62%), Gaps = 18/1324 (1%)
Frame = +2
Query: 11 VKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAK 190
++ IL + AI +PA D TDEKW ++D A + + L ++ + + + + +AK
Sbjct: 22 IRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAK 77
Query: 191 VLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDT 370
+W+ L KLY K L + ++LKRRL+ RM S+ DHIN N + S L+ I++
Sbjct: 78 EIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAEN 137
Query: 371 DKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSAL---QAKALRKQEFSDE 541
+++ +LL SLP SYD + + + D L FDDV A+ +++ K+E S+
Sbjct: 138 ERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAGAILEEESRRKNKEERSES 192
Query: 542 AQ-------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEK 700
++ G + +I+CY C GH++ +C +K EK
Sbjct: 193 SKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEK 252
Query: 701 R-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKD 877
E S S+ VAS ++ E L + E + + LND W++DSGA++HM P +D
Sbjct: 253 NSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLNDVWIMDSGATWHMTPHRD 306
Query: 878 CFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVL 1054
F +Y ++ G+V MGN +A + GVGT++++ H G + + VRHV L+K+L+S+G L
Sbjct: 307 WFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQL 366
Query: 1055 ESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC-GGAMVSQSIDEKQVEST 1228
+ LG K E G LKV + M E+ NLY L GD + A V+ + E E+T
Sbjct: 367 DDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQE---ETT 423
Query: 1229 RLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLD 1408
+WH RLGHMSE+G+ VL + LL G KT L FCEHC+ KQ R F ++ +LD
Sbjct: 424 MMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILD 483
Query: 1409 YIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGR 1588
IHSDVW S +S GGAR+FV+FIDD+SRR+W+Y +K K++V VFK +K +E + G+
Sbjct: 484 LIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGK 542
Query: 1589 VVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSN 1768
+K +R+DNGGEY++ FC+++GIVR FTV TPQQNGVAERMNRTLLER R ML
Sbjct: 543 KIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKT 602
Query: 1769 ASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKED 1948
A + K +WAEAV TACY++NRSPSTAI K+PME+W G V+YS+L VFGCP Y
Sbjct: 603 AGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQ 662
Query: 1949 ---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQI 2119
KL +++K IFLGY VKGYRLW P K ++SRDV F E L SK+ D S+
Sbjct: 663 ERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENE-LQSKQKNDSTSK- 720
Query: 2120 XXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQ 2299
+Q+E++ S + ST+Q + PS S
Sbjct: 721 --------ETAIVQMEEKSKESDSSEAEPVHEEQEPDDVNNGVRRSTRQTQK--PSWQSD 770
Query: 2300 RERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWEL 2479
Y + +Y L E EP TF EA++ + A +W TAM EEM++LH+N TWEL
Sbjct: 771 --------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWEL 822
Query: 2480 VKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVV 2656
V+LPKGRK IG KWVY +K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV
Sbjct: 823 VELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVV 876
Query: 2657 KHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKS 2836
+ T+IRV+LA A DL LEQLDVKTAFLHG LEE+IYM QP G++ GKE+ VCRL KS
Sbjct: 877 RLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKS 936
Query: 2837 LYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSK 3016
LYGLKQ+PR WYKRFD+F++ Y+R D C Y+K+F G F+ LLLYVDDML+ +K
Sbjct: 937 LYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNK 996
Query: 3017 SEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSK 3196
+ LK QL+ EF+MKDLGPA KILGM+I RDR K+ L+QK+YL KVLRRF M + K
Sbjct: 997 DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCK 1056
Query: 3197 AISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRY 3376
IS P+P KLS + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG+VSR+
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRF 1116
Query: 3377 MANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCF 3556
MA+PG+ HW AVK I+RY+ GT + + F + L V G+VDSD+AGD DK +ST+GY F
Sbjct: 1117 MADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVDSDFAGDHDKRKSTTGYVF 1175
Query: 3557 TLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQ 3736
TL+G +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V CDSQ
Sbjct: 1176 TLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQ 1235
Query: 3737 SAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFER 3916
SA+H+A+N +H+RTKHI ++YH VREVV+ G V + K+ T DN AD +TK + KF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIW 1295
Query: 3917 CLSL 3928
C SL
Sbjct: 1296 CRSL 1299
>AAR87163.1 putative polyprotein [Oryza sativa Japonica Group] AAU89150.1
integrase core domain containing protein [Oryza sativa
Japonica Group] ABF98081.1 retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 1129 bits (2921), Expect = 0.0
Identities = 611/1305 (46%), Positives = 834/1305 (63%), Gaps = 21/1305 (1%)
Frame = +2
Query: 80 DWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKR 259
+WT E+ D A S I+L LS DI + +A LW KLE + + KDLTS++++K
Sbjct: 48 EWTAEEKRK-DRKALSLIQLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKM 106
Query: 260 RLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLS 439
+L + ++ S+++HI+ F +I +DL ++ V D D ++LLCSLP SY F +L
Sbjct: 107 KLFSHKLHESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILL 166
Query: 440 GKTDEGEDKDKLVFDDVVSALQAKALRK---QEFSDEAQVEGLFV---------DXXXXX 583
+ D+L +V ALQ + K Q ++ ++ E L V +
Sbjct: 167 SR-------DELTLAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDH 219
Query: 584 XXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALE 763
C YC+K H +C KL+ ++++ KSD K V + AE S++
Sbjct: 220 DKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKEKR--KSDGKASVVTSAENSDS-G 276
Query: 764 DPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREV-NGGTVMMGNSNAC 940
D + F V + +D W+LD+ S+H+C ++D F++Y+ V N V MG+ N
Sbjct: 277 DCLVVFAGYVAS-------HDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPR 329
Query: 941 KTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGS 1117
+ VG+G+VQ+++H G+ TL +VRH+P + ++LISL L++ GYKY+ G +KV
Sbjct: 330 EIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSL 389
Query: 1118 LKMTGERHG-NLYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKG 1294
+ M G+ + NLY LRG + G++ + ++ + + T LWHMRLGHMSE GM+ L +
Sbjct: 390 VYMIGDMNSANLYVLRGSTL-HGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRN 448
Query: 1295 LLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFV 1474
LL G + FCEHC+FGK R F T+VH T+G+LDY+H+D+WGPSR S GGAR+ +
Sbjct: 449 LLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYML 508
Query: 1475 TFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFC 1654
T IDD+SR+ W Y +KHK++ FK+ K M+E+Q + VK + +DNGGE+ D ++C
Sbjct: 509 TIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYC 568
Query: 1655 EEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRS 1834
++GIVRH T+ TPQQNGVAERMNRT++ +ARCMLSNA ++K +WAEA NTACYL+NRS
Sbjct: 569 RKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRS 628
Query: 1835 PSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYR 2014
PS + K+P+E+W+G +YS LRVFGC AY HV KL RA K +FLGY GVKGY+
Sbjct: 629 PSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYK 688
Query: 2015 LWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTI 2194
LW PE NK +SR+V FNE M + TD I +QVE + I
Sbjct: 689 LWNPETNKTFMSRNVIFNEFVMFNDSLPTD---VIPGGSDEEQQYVSVQVEHVDDQETEI 745
Query: 2195 XXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQRERRPPTRYGFD-EYASYALSVFED 2371
Q Q E I ++R P R + + YA S E
Sbjct: 746 VGNDVNDTVQHSPSVL------QPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQ 799
Query: 2372 -----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK 2536
EP T+ EA+ + +W +A+ EEM+SL KN TWELV LPK +K + CKW++ K
Sbjct: 800 VENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRK 859
Query: 2537 DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELE 2716
+G+ S+ R+K RLVAKG++Q GVDYN+VFSPVVKH+SIR + V DLELE
Sbjct: 860 EGLSPSEP----PRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELE 915
Query: 2717 QLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFML 2896
QLDVKT FLHG LEE+IYM QP G+ V GKEDYVC+L++SLYGLKQSPRQWYKRFD+FML
Sbjct: 916 QLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFML 975
Query: 2897 QQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLG 3076
+ RS++D CVY K F GS +YLLLYVDDMLIAAKSK +I LKKQLS EF+MKDLG
Sbjct: 976 SHGFKRSEFDSCVYIK-FVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLG 1034
Query: 3077 PAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTT 3256
AKKILGMEITRDR+ G L L+Q+SY++KVL+RF MH++K +S PI KLS C +T
Sbjct: 1035 AAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCAST 1094
Query: 3257 TEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLN 3436
E++E+MS+VPY++AVGSLMYAMVC+ PD + A+ LVSRYMANPG+ HW AV+ I RYL
Sbjct: 1095 DEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLR 1154
Query: 3437 GTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALS 3616
GT D L F + + G+VDSD+A D DK RS +GY FT+ +SW++ LQP+VA S
Sbjct: 1155 GTADACLKFGRIDK-GLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQS 1213
Query: 3617 TTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDI 3796
TTEAEY+A+ EA KE++WL+GL +L + + + CDSQSAI L K+Q++H RTKHIDI
Sbjct: 1214 TTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDI 1273
Query: 3797 RYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3931
+YH VR++V G +++ K+ DNPADM+TK +P KFE C SL+
Sbjct: 1274 KYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLV 1318
>CAH66122.1 OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 1129 bits (2919), Expect = 0.0
Identities = 618/1318 (46%), Positives = 823/1318 (62%), Gaps = 34/1318 (2%)
Frame = +2
Query: 80 DWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKR 259
+WT E+ D A + I+L L DI +E ++ LW KLE + + KDLTS++ +K
Sbjct: 46 EWTAEEIRK-DQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKM 104
Query: 260 RLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLS 439
+L +M S++ HI EF KI +DL ++ V D D ++LLCSLP SY F D +L
Sbjct: 105 KLFTLKMKEEDSVITHIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL 164
Query: 440 GKTDEGEDKDKLVFDDVVSALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXX 607
+ D+L +V ALQ K K + S ++ E L V
Sbjct: 165 SR-------DELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNY 217
Query: 608 XXXXXDIE--------CYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALE 763
C YC+ H +C K++A+ E++ K D K VAS A +
Sbjct: 218 DRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAVSDDDSG 276
Query: 764 DPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNAC 940
D + F V +D W+LDS S+H+C ++ F++Y+ V G V+ MG+ N C
Sbjct: 277 DCLVVFAGCVAG-------HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPC 329
Query: 941 KTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGS 1117
VG+G+VQ+++ G+ TL VR++P + ++LISL L++ GYKY+ G LKV
Sbjct: 330 AIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSL 389
Query: 1118 LKMTGERHG-NLYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKG 1294
+ + G+ + LY LRG + G + ++ + T LWHMRLGHMS GM+ L +
Sbjct: 390 VCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRN 449
Query: 1295 LLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFV 1474
LL G + K+ FCEHCIFGK R F T+VH T+G LDY+H+D+WGPS+ S GGAR+ +
Sbjct: 450 LLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYML 509
Query: 1475 TFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFC 1654
T IDD+SR+VW Y +KHK++ FK WK M+E+Q R VK + +DNGGE+ ++C
Sbjct: 510 TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYC 569
Query: 1655 EEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRS 1834
++GIVRH T+ TPQQNGVAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRS
Sbjct: 570 RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 629
Query: 1835 PSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYR 2014
PS + K+P+EVW+G +YS L+VFGC AY HV KL RA K +FLGY GVKGY+
Sbjct: 630 PSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYK 689
Query: 2015 LWCPELNKFIISRDVTFNERAM----LDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPS 2182
LW PE K +SR V FNE M L S+ + + Q MQVE
Sbjct: 690 LWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQ----------RMHMQVEHVDDD 739
Query: 2183 SSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLT---------SQRERRPPTRYGFD 2335
+ QQ I L S+R +PP R +
Sbjct: 740 TGVQVEPVDEQDDHNNDVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEE 799
Query: 2336 -EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKG 2497
+ YALS E EP T++EA+ + W +AM EEM+SL KN TWE+V LPK
Sbjct: 800 CNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKK 859
Query: 2498 RKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRV 2677
+K I CKW++ K+ + S+ +YKARLVA+GY+Q GVDYN+VFSPVVKH+SIR
Sbjct: 860 KKTISCKWIFKRKEALSLSEP----PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRT 915
Query: 2678 LLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQS 2857
L+ VA DLELEQLDVKTAFLHG LEEDIYM QP G+ V GKE YVC+L++SLYGLKQS
Sbjct: 916 FLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQS 975
Query: 2858 PRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLK 3037
PRQW KRFD+FML + RSKYD CVY K GS +YLLLYVDDMLIAAKSK EI LK
Sbjct: 976 PRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLK 1034
Query: 3038 KQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIP 3217
K LS EF+MKDLG AKKILGMEI+RDR G L L+Q +Y++KVL+RF M N+KA+S PI
Sbjct: 1035 KLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIA 1094
Query: 3218 STVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRA 3397
KLS CP+T E+E+MS+VPY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+
Sbjct: 1095 PHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKE 1154
Query: 3398 HWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPI 3577
HW A++ I RYL GT L F + + G+VDSDYA D D+ RS +GY FT+ +
Sbjct: 1155 HWRALQWIFRYLRGTTYSCLKFGRTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAV 1213
Query: 3578 SWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAK 3757
SWR+ LQ +VALSTTEAEY+A+ EA KE +WL+GL +L ++ + ++CDSQSAI+L K
Sbjct: 1214 SWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1273
Query: 3758 NQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3931
+Q++H RTKHIDI+YH VR+V++ G +++ K+ T DNPADM+TK +P KFE C SL+
Sbjct: 1274 DQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLV 1331
>ACL97383.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 1127 bits (2915), Expect = 0.0
Identities = 609/1323 (46%), Positives = 828/1323 (62%), Gaps = 18/1323 (1%)
Frame = +2
Query: 11 VKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAK 190
++ IL + AI +PA D TDEKW ++D A + + L ++ + + + + +AK
Sbjct: 22 IRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAK 77
Query: 191 VLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDT 370
+W+ L KLY K L + ++LKRRL+ RM S+ DHIN N + S L+ I++
Sbjct: 78 EIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAEN 137
Query: 371 DKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSAL---QAKALRKQEFSDE 541
+++ +LL SLP SYD + + + D L FDDV A+ +++ K+E S+
Sbjct: 138 ERAELLLQSLPDSYDQLIINITNNNIT-----DTLHFDDVAGAILEEESRRKNKEERSES 192
Query: 542 AQ-------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEK 700
++ G + +I+CY C GH++ +C +K EK
Sbjct: 193 SKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEK 252
Query: 701 R-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKD 877
E S S+ VAS ++ E L + E + + LND W++DSGA++HM P +D
Sbjct: 253 NSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLNDVWIMDSGATWHMTPHRD 306
Query: 878 CFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVL 1054
F +Y ++ G+V MGN +A + GVGT++++ H G + + VRHV L+K+L+S+G L
Sbjct: 307 WFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQL 366
Query: 1055 ESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC-GGAMVSQSIDEKQVEST 1228
+ LG K E G LKV + M E+ NLY L GD + A V+ S E E+T
Sbjct: 367 DDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAASSQE---ETT 423
Query: 1229 RLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLD 1408
+WH RLGHMSE+G+ VL+ + LL G K L FCEHC+ KQ R F ++ +LD
Sbjct: 424 MMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILD 483
Query: 1409 YIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGR 1588
IHSDVW S +S GGAR+FV+FIDD+SRR+W+Y +K K++V VFK +K +E + +
Sbjct: 484 LIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRK 542
Query: 1589 VVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSN 1768
+K +R+DNGGEYI+ FC+++GIVR FTV TPQQNGVAERMNRTLLER R ML
Sbjct: 543 KIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKT 602
Query: 1769 ASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKED 1948
A + K +WAEAV TACY++NRSPSTAI K+PME+W G V+YS+L VFGCP Y
Sbjct: 603 AGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQ 662
Query: 1949 ---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQI 2119
KL +++K IFLGY VKGYRLW P K ++SRDV F E + +K +
Sbjct: 663 ERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTSKET 722
Query: 2120 XXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQ 2299
+Q+E++ S + ST+Q + PS S
Sbjct: 723 AI----------VQMEEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQK--PSWQSD 770
Query: 2300 RERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWEL 2479
Y + +Y L E EP TF EA++ + A +W TAM EEM++LH+N TWEL
Sbjct: 771 --------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWEL 822
Query: 2480 VKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVV 2656
V+LPKGRK IG KWVY +K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV
Sbjct: 823 VELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVV 876
Query: 2657 KHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKS 2836
+ T+IRV+LA A DL LEQLDVKTAFLHG LEE+IYM QP G++ GKE+ VCRL KS
Sbjct: 877 RLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKS 936
Query: 2837 LYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSK 3016
LYGLKQ+PR WYKRFD+F++ Y+R D C Y+K+F G F+ LLLYVDDML+ +K
Sbjct: 937 LYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNK 996
Query: 3017 SEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSK 3196
+ LK QL+ EF+MKDLGPA KILGM+I RDR K+ L+QK+YL KVLRRF M + K
Sbjct: 997 DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNMQDCK 1056
Query: 3197 AISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRY 3376
IS P+P KLS + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG+VSR+
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRF 1116
Query: 3377 MANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCF 3556
MA+PG+ HW AVK I+RY+ GT + + F + L V G+VDSD+AGD DK +ST+GY F
Sbjct: 1117 MADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVDSDFAGDHDKRKSTTGYVF 1175
Query: 3557 TLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQ 3736
TL+G +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V CDSQ
Sbjct: 1176 TLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQ 1235
Query: 3737 SAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFER 3916
SA+H+A+N +H+RTKHI ++YH VREVV+ G V + K+ T DN AD++TK + KF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVW 1295
Query: 3917 CLS 3925
C S
Sbjct: 1296 CRS 1298
>KYP42748.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 1124 bits (2906), Expect = 0.0
Identities = 606/1328 (45%), Positives = 829/1328 (62%), Gaps = 22/1328 (1%)
Frame = +2
Query: 11 VKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAK 190
++ IL +KAI+ +P+ D TDEKW ++D A + + L ++ + + + +T+AK
Sbjct: 22 IRAILRKDNCLKAIEGRPS----DITDEKWREMDDNAVANLHLAMADSVLSSIAEKTTAK 77
Query: 191 VLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDT 370
+W+ L KLY K L + ++LKR+L+ RMS ++ DHIN N + + LS I +
Sbjct: 78 EIWDTLVKLYEVKSLHTRIFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVEN 137
Query: 371 DKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDEAQ- 547
+++ +LL SLP SYD + + + +L F+DV A+ + R++ D +
Sbjct: 138 ERAELLLQSLPDSYDQLIINITNNNV-----VGRLSFEDVAGAILEEESRRKNKEDRLES 192
Query: 548 ---------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEK 700
+ G ++ +++CY C GH++ DC K+ K
Sbjct: 193 SKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNLKCYNCGMRGHMKKDCWHKKSGGGK 252
Query: 701 R-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKD 877
E S S+ VAS E E L E ++ + L++ W+LDSGA++HM P++D
Sbjct: 253 NSEASTSQGCVASTQEDGEILYS-------EAISSRGEKQLHECWILDSGATWHMTPNRD 305
Query: 878 CFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVL 1054
F TY ++GG+V MGN +A + GVGT++++ + G I T+ VRHV L+K+L+S+G L
Sbjct: 306 WFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQL 365
Query: 1055 ESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVCGGAMVSQSIDEKQVESTR 1231
+ L K E G LKV + M E+ NLY L G+ + +I ++ E+T
Sbjct: 366 DDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQE--EATM 423
Query: 1232 LWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDY 1411
+WH RLGHMSE+G+ +L+ + LL G K L FCEHC+ KQ R F ++ +LD
Sbjct: 424 MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDL 483
Query: 1412 IHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRV 1591
IHSDVW S +S GGA++FV+FIDD+SRR+W+Y +K K++V VFK++K VE G+
Sbjct: 484 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 542
Query: 1592 VKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNA 1771
+K +R+DNGGEYI+ FC+++GI R FTV TPQQNGVAERMNRTLLER R ML A
Sbjct: 543 IKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLERTRAMLRTA 602
Query: 1772 SLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKED- 1948
L K +WAEAV TACYL+NRSPSTAI K+PME+W G NYS+L VFGCP Y
Sbjct: 603 GLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQE 662
Query: 1949 --KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKK--FTDWDSQ 2116
KL +++K IFLGY VKGYRLW P K ++SRDV F E + ++ T D+
Sbjct: 663 RTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQKEQENDSTIKDTS 722
Query: 2117 IXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTS 2296
I + EQ + ++++ I
Sbjct: 723 IVEIGGKSKKDDTSEAEQEHEEQEP-------------------DEANDEEVQQI----- 758
Query: 2297 QRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNH 2467
+RERR P+ Y + +Y L E EP TF+EA+ ++ +W AM EE+++LH+N
Sbjct: 759 RRERRRPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNK 818
Query: 2468 TWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVF 2644
TWELV LPKGRK IGCKWVY +K DG + RY+ARLV KGYAQ+EG+D+NE+F
Sbjct: 819 TWELVDLPKGRKAIGCKWVYKIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIF 872
Query: 2645 SPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCR 2824
SPVV+ T+IRV+LA A F+L LEQLDVKTAFLHG L+E+IYM QP G++ GKE+ VCR
Sbjct: 873 SPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCR 932
Query: 2825 LQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIA 3004
L KSLYGLKQ+PR WYKRFD+F++ Y R D C Y+ +F F+ LLLYVDDML+
Sbjct: 933 LTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVV 992
Query: 3005 AKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGM 3184
+K +I LK QL+ EF+MKDLGPA KILGM+I RDR ++ L+QK+YL KVLRRF M
Sbjct: 993 GPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNM 1052
Query: 3185 HNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGL 3364
+ K IS P+P KLS + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG
Sbjct: 1053 QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGA 1112
Query: 3365 VSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTS 3544
VSR+MA+PGR HW VK ILRY+ GT D+ L FE + V G+VDSD+AGD DK +ST+
Sbjct: 1113 VSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF-VRGYVDSDFAGDLDKRKSTT 1171
Query: 3545 GYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVN 3724
GY FTL+G +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V
Sbjct: 1172 GYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQEKITVY 1231
Query: 3725 CDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKV 3904
CDSQSA+H+A+N +H+RTKHI I+YH VREVV+ G V + K+ T+DN AD++TK V
Sbjct: 1232 CDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTD 1291
Query: 3905 KFERCLSL 3928
KF C SL
Sbjct: 1292 KFTWCRSL 1299
>KYP53032.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 1122 bits (2901), Expect = 0.0
Identities = 604/1328 (45%), Positives = 830/1328 (62%), Gaps = 22/1328 (1%)
Frame = +2
Query: 11 VKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAK 190
++ IL +KAI+ +P+ D TDEKW ++D A + + L ++ + + + +T+AK
Sbjct: 22 IRAILRKDNCLKAIEGRPS----DITDEKWREMDDNAVANLHLAMADSVLSSIAEKTTAK 77
Query: 191 VLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDT 370
+W+ L KLY K L + ++LKR+L+ RMS ++ DHIN N + + LS I +
Sbjct: 78 EIWDTLVKLYEVKSLHTRIFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVEN 137
Query: 371 DKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDEAQ- 547
+++ +LL SLP SYD + + + +L F+DV A+ + R++ D +
Sbjct: 138 ERAELLLQSLPDSYDQLIINITNNNV-----VGRLSFEDVAGAILEEESRRKNKEDRLES 192
Query: 548 ---------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEK 700
+ G ++ +++CY C GH++ DC K+ K
Sbjct: 193 SKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNLKCYNCGMRGHMKKDCWHKKSGGGK 252
Query: 701 R-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKD 877
E S S+ VAS E E L E ++ + L++ W+LDSGA++HM P++D
Sbjct: 253 NSEASTSQGCVASTQEDGEILYS-------EAISSRGEKQLHECWILDSGATWHMTPNRD 305
Query: 878 CFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVL 1054
F TY ++GG+V MGN +A + GVGT++++ + G I T+ VRHV L+K+L+S+G L
Sbjct: 306 WFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQL 365
Query: 1055 ESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVCGGAMVSQSIDEKQVESTR 1231
+ L K E G LKV + M E+ NLY L G+ + +I ++ E+T
Sbjct: 366 DDLKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQE--EATM 423
Query: 1232 LWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDY 1411
+WH RLGHMSE+G+ +L+ + LL G K L FCEHC+ KQ R F ++ +LD
Sbjct: 424 MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDL 483
Query: 1412 IHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRV 1591
IHSDVW S +S GGA++FV+FIDD+SRR+W+Y +K K++V VFK++K VE G+
Sbjct: 484 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 542
Query: 1592 VKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNA 1771
+K +R+DNGGEYI+ FC+++GI R FTV TPQQNGVAERMNRTLLER R ML A
Sbjct: 543 IKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLERTRAMLRTA 602
Query: 1772 SLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKED- 1948
L K +WAEAV TACYL+NRSPSTAI K+PME+W+G NYS+L VFGCP Y
Sbjct: 603 GLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKPSNYSSLHVFGCPVYVMYNSQE 662
Query: 1949 --KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKK--FTDWDSQ 2116
KL +++K IFLGY VKGYRLW P K ++SRDV F E + ++ T D+
Sbjct: 663 RTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQKEQENDSTIKDTS 722
Query: 2117 IXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTS 2296
I + EQ + ++++ I
Sbjct: 723 IVEIGGKSKKDDTSEAEQEHEEQEP-------------------DEANDEEVQQI----- 758
Query: 2297 QRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNH 2467
+RERR P+ Y + +Y L E EP TF+EA+ ++ +W AM EE+++LH+N
Sbjct: 759 RRERRRPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNK 818
Query: 2468 TWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVF 2644
TWELV LPKGRK IGCKWVY +K DG + RY+ARLV KGYAQ+ G+D+NE+F
Sbjct: 819 TWELVDLPKGRKAIGCKWVYKIKRDGNDQVE------RYRARLVVKGYAQKAGIDFNEIF 872
Query: 2645 SPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCR 2824
SPVV+ T+IRV+LA A F+L LEQLDVKTAFLHG L+E+IYM QP G++ GKE+ VCR
Sbjct: 873 SPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCR 932
Query: 2825 LQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIA 3004
L KSLYGLKQ+PR WYKRFD+F++ Y R D C Y+ +F F+ LLLYVDDML+
Sbjct: 933 LTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVV 992
Query: 3005 AKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGM 3184
+K +I LK QL+ EF+MKDLGPA KILGM+I RDR ++ L+QK+YL KVLRRF M
Sbjct: 993 GPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNM 1052
Query: 3185 HNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGL 3364
+ K IS P+P KLS + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG
Sbjct: 1053 QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGA 1112
Query: 3365 VSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTS 3544
VSR+MA+PGR HW VK ILRY+ GT D+ L FE + + V G+VDSD+AGD DK +ST+
Sbjct: 1113 VSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFV-VRGYVDSDFAGDLDKRKSTT 1171
Query: 3545 GYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVN 3724
GY FTL+G +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V
Sbjct: 1172 GYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQEKITVY 1231
Query: 3725 CDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKV 3904
CDSQSA+H+A+N +H+RTKHI ++YH VREVV+ G V + K+ T+DN AD++TK V
Sbjct: 1232 CDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTD 1291
Query: 3905 KFERCLSL 3928
KF C SL
Sbjct: 1292 KFTWCRSL 1299
>ACL97386.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 1120 bits (2896), Expect = 0.0
Identities = 600/1300 (46%), Positives = 817/1300 (62%), Gaps = 18/1300 (1%)
Frame = +2
Query: 80 DWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKR 259
D TDEKW ++D A + + L ++ + + + + +AK +W+ L KLY K L + ++LKR
Sbjct: 41 DITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKR 100
Query: 260 RLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLS 439
RL+ +M S+ DHIN N + S L+ I+ +++ +LL SLP SYD + + +
Sbjct: 101 RLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITN 160
Query: 440 GKTDEGEDKDKLVFDDVVSAL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXX 589
D L FDDV A+ +++ K+E S+ ++ G +
Sbjct: 161 NNI-----ADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQ 215
Query: 590 XXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALED 766
+I+CY C GH++ +C +K EK E S S+ VAS ++ E L
Sbjct: 216 NHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEIL-- 273
Query: 767 PMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKT 946
+ E + + LND W++DSGA++HM P +D F +Y ++ G+V MGN +A +
Sbjct: 274 ----YSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEI 329
Query: 947 VGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLK 1123
GVGT++++ H G + + VRHV L+K+L+S+G L+ LG K E G LKV +
Sbjct: 330 AGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVV 389
Query: 1124 MTGER-HGNLYFLRGDIVC-GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGL 1297
M E+ NLY L GD + A V+ + E E+T +WH RLGHMSE+G+ VL + L
Sbjct: 390 MKAEKITSNLYMLLGDTLQEADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNL 446
Query: 1298 LGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVT 1477
L G KT L FCEHC+ KQ R F ++ +LD IHSDVW S +S GGAR+FV+
Sbjct: 447 LHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVS 505
Query: 1478 FIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCE 1657
FIDD+SRR+W+Y +K K++V VFK +K +E + + +K +R+DNGGEY++ FC+
Sbjct: 506 FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCK 565
Query: 1658 EQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSP 1837
++GIVR FTV TPQQNGVAERMNRTLLER R ML A + K +WAEA TACY++NRSP
Sbjct: 566 QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSP 625
Query: 1838 STAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHV---KEDKLGVRAKKAIFLGYPLGVKG 2008
STAI K+PME+W G V+YS+L VFGCP Y ++ KL +++K IFLGY VKG
Sbjct: 626 STAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKG 685
Query: 2009 YRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPSSS 2188
YRLW P K ++SRDV F E + +K + +Q+E++ S
Sbjct: 686 YRLWDPTARKVVVSRDVVFAENELQSEQKNDSTSKETAI----------VQMEEKSKESD 735
Query: 2189 TIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFE 2368
+ ST+Q + PS S Y + +Y L E
Sbjct: 736 SSEAESVHEEQEPDDVNDGVRRSTRQTQK--PSWQSD--------YVMTSHDAYCLITEE 785
Query: 2369 DEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGI 2545
EP TF EA++ + A +W TAM EEM++LH+N TWELV+LPKGRK IG KWVY +K DG
Sbjct: 786 GEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGN 845
Query: 2546 PDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLD 2725
+ RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T+IRV+LA A DL LEQLD
Sbjct: 846 DQVE------RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLD 899
Query: 2726 VKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQK 2905
VKTAFLHG LEE+IYM QP G++ GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++
Sbjct: 900 VKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLD 959
Query: 2906 YTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAK 3085
Y R D C Y+K+F G F+ LLLYVDDML+ +K + LK QL+ EF+MKDLGPA
Sbjct: 960 YNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019
Query: 3086 KILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEE 3265
KILGM+I RDR K+ L+QK+YL KVLRRF M + K IS P+P KLS + P+ E
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAE 1079
Query: 3266 MEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTL 3445
MS+VPYA+AVGSLMYAM+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT
Sbjct: 1080 RMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTS 1139
Query: 3446 DIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTE 3625
+ + F + L V G+VDSD+AGD DK +ST+GY FTL+G +SW S LQ +VALSTTE
Sbjct: 1140 GVAVCFGGSE-LTVWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTE 1198
Query: 3626 AEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYH 3805
AEY+A T+A KEA+W++ L+++LG Q + V CDSQSA+H+A+N +H+RTKHI ++YH
Sbjct: 1199 AEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYH 1258
Query: 3806 KVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLS 3925
VREVV+ G V + K+ T DN AD++TK + KF C S
Sbjct: 1259 FVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFVWCRS 1298
>ACL97385.1 Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 1119 bits (2894), Expect = 0.0
Identities = 605/1323 (45%), Positives = 826/1323 (62%), Gaps = 18/1323 (1%)
Frame = +2
Query: 11 VKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAK 190
++ IL + AI +PA D TDEKW ++D A + + L ++ + + + + +AK
Sbjct: 22 IRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAK 77
Query: 191 VLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDT 370
+W+ L KLY K L + ++LKRRL+ RM S+ DHIN N + S L+ I++
Sbjct: 78 EIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAEN 137
Query: 371 DKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSAL---QAKALRKQEFSDE 541
+++ +LL SLP SYD + + + D L FDDV A+ +++ K+E S+
Sbjct: 138 ERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAGAILEEESRRKNKEERSES 192
Query: 542 AQ-------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEK 700
++ G + +I+CY C GH++ +C K EK
Sbjct: 193 SKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKGHVKKECWNNKKNGEK 252
Query: 701 R-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKD 877
E + S+ VAS ++ E L + E + + LND W++DSGA++HM P +D
Sbjct: 253 NSEATTSQGCVASTSDDGEIL------YSEAATSSEGERQLNDVWIMDSGATWHMTPHRD 306
Query: 878 CFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVL 1054
F +Y ++ G+V MGN +A + GVGT++++ H G + + VRHV L+K+L+S+G L
Sbjct: 307 WFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQL 366
Query: 1055 ESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC-GGAMVSQSIDEKQVEST 1228
+ LG K +E G LKV + M E+ NLY L GD + A V+ + E E+T
Sbjct: 367 DDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQE---ETT 423
Query: 1229 RLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLD 1408
+WH RLGHMSE+G+ VL + LL G KT L FCEHC+ KQ R F ++ +LD
Sbjct: 424 MMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILD 483
Query: 1409 YIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGR 1588
IHSDVW S +S GGAR+FV+FIDD+SRR+W+Y +K K++V VFK +K +E + G+
Sbjct: 484 LIHSDVW-ESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGK 542
Query: 1589 VVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSN 1768
+K +R+DNGGEY++ FC+++GIVR FTV TPQQNGVAERMNRTLLER R ML
Sbjct: 543 KIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKT 602
Query: 1769 ASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKED 1948
A + K +WAEAV TACY++NRSPST I K+PME+W G V+YS+L VFGCP Y
Sbjct: 603 AEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQ 662
Query: 1949 ---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQI 2119
KL +++K IFLGY VKGYRLW P K ++SRDV F E + +K +
Sbjct: 663 ERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTFKET 722
Query: 2120 XXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQ 2299
+Q+E++ S + ST+Q + PS S
Sbjct: 723 AI----------LQIEEKSKESDSSEAESVHEEQEPDDVNNGVRRSTRQTQK--PSWQSD 770
Query: 2300 RERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWEL 2479
Y + +Y L E EP TF EA++ + A +W TA+ EEM++L KN TWEL
Sbjct: 771 --------YVMTGHDAYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWEL 822
Query: 2480 VKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVV 2656
V+LPKGRK IG KWVY +K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV
Sbjct: 823 VELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVV 876
Query: 2657 KHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKS 2836
+ T+IRV+LA A DL LEQLDVKTAFLHG LEE+IYM QP G++ GKE+ VCRL KS
Sbjct: 877 RLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKS 936
Query: 2837 LYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSK 3016
LYGLKQ+PR WYKRFD+F++ Y R D C Y+K+F G F+ LLLYVDD+L+ +K
Sbjct: 937 LYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNK 996
Query: 3017 SEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSK 3196
+ LK QL+ EF+MKDLGPA KILGM+I RDR K+ L+QK+YL KVLRRF M + K
Sbjct: 997 DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCK 1056
Query: 3197 AISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRY 3376
IS P+P KLS + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG+VSR+
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRF 1116
Query: 3377 MANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCF 3556
MA+PG+ HW AVK I+RY+ GT + + F + L V G+VDSD+AGD DK +ST+GY F
Sbjct: 1117 MADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVDSDFAGDHDKRKSTTGYVF 1175
Query: 3557 TLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQ 3736
TL+G +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V CDSQ
Sbjct: 1176 TLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQ 1235
Query: 3737 SAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFER 3916
SA+H+A+N +H+RTKHI ++YH VREVV+ G V + K+ T DN AD++TK + KF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVW 1295
Query: 3917 CLS 3925
C S
Sbjct: 1296 CRS 1298
>AFB73911.1 polyprotein [Citrus sinensis]
Length = 1309
Score = 1117 bits (2890), Expect = 0.0
Identities = 604/1302 (46%), Positives = 834/1302 (64%), Gaps = 23/1302 (1%)
Frame = +2
Query: 74 PKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYL 253
P + TD+KW ++D A S + L L+ + + + + +AK +W+ L KLY K L ++++L
Sbjct: 39 PMEITDDKWNEVDGNAISDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFL 98
Query: 254 KRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYL 433
KR+L+ RM+ + DHIN + S L+ + I + +++ +LL SLP SYD + L
Sbjct: 99 KRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINL 158
Query: 434 LSGKTDEGEDKDKLVFDDVV-SALQAKALRKQEFSDEA---QVEGLFV------DXXXXX 583
+ E LVFDDV S L ++ RK + + +A Q E L V +
Sbjct: 159 TNNNPVES-----LVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSG 213
Query: 584 XXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEKREK--SDSKNVVASVAEGSEA 757
+++CY C K GH++ +C + R E +E S+++ VAS ++ E
Sbjct: 214 SQNQGRSKFRGKKNVKCYNCGKKGHVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEI 273
Query: 758 LEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNA 937
L + E + L+D W++DSGA++HM ++ F TY ++GG+V MGN +A
Sbjct: 274 L------YSEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327
Query: 938 CKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNG 1114
+ G+GT++++ G I T+ EVRHV L+K+L+SLG ++S GYK E G +K+
Sbjct: 328 LEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGA 387
Query: 1115 SLKMTGERHG-NLYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSK 1291
+ M E+ G NL+ L+G+ + S E EST +WH++LGHMSE+G+ +LS +
Sbjct: 388 LVLMKVEKIGANLFMLKGETLQEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSER 444
Query: 1292 GLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWF 1471
LL G K+ L FCEHC+ KQ R F ++ ++ +LD IHSDVW S +S GGA++
Sbjct: 445 KLLPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYM 503
Query: 1472 VTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEF 1651
VTFIDD+SRR W+Y +K K++V VFK++K VE + G+ +K +R+DNGGEY + F
Sbjct: 504 VTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAF 563
Query: 1652 CEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNR 1831
C+++GI R FTV TPQQNGVAERMNRTL ER R ML A L +WAEA TACY+VNR
Sbjct: 564 CKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNR 623
Query: 1832 SPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGV 2002
SPSTAI K+ ME+WTG +YS L FGCP Y ++ +E KL ++++ IFLGY GV
Sbjct: 624 SPSTAIGLKTAMEMWTGKPADYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGV 683
Query: 2003 KGYRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPS 2182
KGYRLW P +K +ISRDV F E D + D D V+++
Sbjct: 684 KGYRLWDPTAHKIVISRDVIFVE----DQLQRKDGDDGT--------------VKEK--- 722
Query: 2183 SSTIXXXXXXXXXXXXXXXXXXXXSTQQQIEN-IPSLT-SQRERRPPT---RYGFDEYAS 2347
S T+ Q+ +E+ P + S RERRPPT Y + +
Sbjct: 723 SETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVA 782
Query: 2348 YALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVY 2527
Y L + EP TF EA++++ W TAM EE+++LHKN TWELV LP+GRK IG KWVY
Sbjct: 783 YCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVY 842
Query: 2528 TVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFD 2704
+K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T++R++LA A FD
Sbjct: 843 KIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFD 896
Query: 2705 LELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFD 2884
L LEQLDVKTAFLHG LEE+IYM QP G+ GKE+ VCRL KSLYGLKQ+PR WYKRFD
Sbjct: 897 LHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFD 956
Query: 2885 TFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEM 3064
+F++ Y R D C Y+K+F F+ LLLYVDDML+A +K I LK QL+ EFEM
Sbjct: 957 SFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEM 1016
Query: 3065 KDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQL 3244
KDLGPA KILGM+I RDR+ K+ L+QK+YL+K+LRRF M + K+IS +P KLS +
Sbjct: 1017 KDLGPANKILGMQIHRDRNNMKIWLSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSSSM 1076
Query: 3245 CPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGIL 3424
CP+ E + MS+VPYA+AVGSLM+AM+CTRPD AQAVG+VSRYMANPG HW AVK IL
Sbjct: 1077 CPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRIL 1136
Query: 3425 RYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPI 3604
RY+ GT D+ L + + V G+VDSD+AGD DK +ST+GY FTL+GA +SW S LQ +
Sbjct: 1137 RYIRGTSDVALCYGGSE-FTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTV 1195
Query: 3605 VALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTK 3784
VALSTTEAEY+A T+A K+A+W++ L+++LG Q+ ++V CDSQSA+H+A+N +H+RTK
Sbjct: 1196 VALSTTEAEYMAATQACKKAIWIQRLLEELGHKQQKILVFCDSQSALHIARNPAFHSRTK 1255
Query: 3785 HIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKF 3910
HI ++YH VREVV++G V L K+ T++N AD+LTK + KF
Sbjct: 1256 HIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKF 1297
>KYP47640.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1032
Score = 1114 bits (2882), Expect = 0.0
Identities = 578/1043 (55%), Positives = 732/1043 (70%), Gaps = 6/1043 (0%)
Frame = +2
Query: 629 ECYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTS 808
EC +CR+ GH + DC KLK + + + +DS NV +E ++D C L V+
Sbjct: 19 ECAFCREKGHWKKDCPKLKNKGQSKTVADS-NV-------AEYVDDSDCS-----LAVSG 65
Query: 809 KSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GV 985
+ + W+LDSG S HMCP+++ F +RE+ G V N T G+G++++++ G
Sbjct: 66 STSSSSAWLLDSGCSNHMCPNREWFYDFRELEEGVVYTANDVPLTTHGIGSIRLKNRDGA 125
Query: 986 ITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHGN-LYFLR 1162
I TL +VR VP L ++LIS+G LE G+ AE G +K+ + M G R N LY+ +
Sbjct: 126 IRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVMKGVRKNNRLYYYQ 185
Query: 1163 GDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHC 1342
G + G A V+ S DEK++ES +LWHMRLGH E+ +++L +GLL + CKLDFCEHC
Sbjct: 186 GTTIIGTAAVASS-DEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNIQACKLDFCEHC 244
Query: 1343 IFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMK 1522
+ GK+ R FGTA+H T+G+LDY+HSDVWGPS+T S G ++VTF+DDFSRR+W+Y MK
Sbjct: 245 VKGKKTRVKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMK 304
Query: 1523 HKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQ 1702
K+EV +F KWK +E Q GR +K R+DNGGEY DP K+ CEE GIVRHFTVK TPQ
Sbjct: 305 TKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQ 364
Query: 1703 QNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTG 1882
QNGVAERMNRTLLE+ RCMLSNA L K +WAEAV A +L+NR PS+AI K+P+E W G
Sbjct: 365 QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFG 424
Query: 1883 N-LVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDV 2059
+Y +L VFGC AY+HVKE KL RAKKAIF+G GVKGYRLWC E K IISRDV
Sbjct: 425 KPATDYDSLHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDV 484
Query: 2060 TFNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXX 2239
TF+E ML ++ ++ E+++ +
Sbjct: 485 TFDESTML---------GKVTTEQKKNGTPKQVEFERKIVFPAN-DEEKTPMVDEESDEE 534
Query: 2240 XXXXXSTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDE-PFTFEEAMSTTHAI 2416
QQ+E+I +R P RY + SYA V D+ P T+ EA+ +
Sbjct: 535 EVHIQEPPQQLESIALRKPKRTTIMPARYV--DMVSYASPVASDDIPTTYIEAVKGSEED 592
Query: 2417 EWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLV 2596
+W++AM EEM+SL +N TW+L LPKG+K IGCKWVY KDG D S VRYKARLV
Sbjct: 593 KWRSAMSEEMESLRRNQTWKLANLPKGKKAIGCKWVYAKKDGFSDK----SEVRYKARLV 648
Query: 2597 AKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMS 2776
AKGYAQ+EG+DYNEVFSPVVKH+SIRVLLA VAQ D+EL Q+DVKTAFLHG+LEE+IYM+
Sbjct: 649 AKGYAQKEGIDYNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEEEIYMT 708
Query: 2777 QPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPG 2956
QP G++VAGKE+ C+L+KSLYGLKQSPRQWYKRFD FML+QKYTRSKYD CVY +K
Sbjct: 709 QPEGFKVAGKENMFCKLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYLRKLHD 768
Query: 2957 GSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLC 3136
GSF+YLLLYVDDMLIA+K+K EI+ LK QL+ EFEMKDLG AKKILGMEI+RDR G+LC
Sbjct: 769 GSFIYLLLYVDDMLIASKNKEEIEKLKTQLNGEFEMKDLGEAKKILGMEISRDRKLGRLC 828
Query: 3137 LTQKSYLEKVLRRFGMHN-SKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSL 3313
LTQK YL++VL+RFG+ + SK +S P+ S KLS L P E +MSKVPYA+AVGSL
Sbjct: 829 LTQKEYLKRVLKRFGISDESKPVSTPLASHFKLSANLSPRDAAEKAYMSKVPYASAVGSL 888
Query: 3314 MYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQ-SLKVC 3490
MYAMVCTRPD + AVG+VSRYM NPG+ HW AVK ILRY+ T+D+GLVF++EQ V
Sbjct: 889 MYAMVCTRPDISYAVGVVSRYMHNPGKEHWQAVKWILRYILNTVDVGLVFQQEQDGQNVV 948
Query: 3491 GFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALW 3670
G+ DS+YAGD D RST+GY FTL+ AP+ WRS LQ VALSTTEAEY+A+TEAVKEA+W
Sbjct: 949 GYCDSNYAGDLDNRRSTTGYVFTLAKAPVCWRSTLQSTVALSTTEAEYMALTEAVKEAIW 1008
Query: 3671 LRGLVKDLGMIQRSVVVNCDSQS 3739
L+GL+ +LG++Q+ V V+CDSQS
Sbjct: 1009 LQGLLGELGILQKHVKVHCDSQS 1031
>AFB73912.1 polyprotein [Citrus sinensis]
Length = 1309
Score = 1113 bits (2878), Expect = 0.0
Identities = 603/1302 (46%), Positives = 829/1302 (63%), Gaps = 23/1302 (1%)
Frame = +2
Query: 74 PKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYL 253
P + TD+KW ++D A S + L L+ + + + + +AK +W+ L KLY K L ++++L
Sbjct: 39 PMEITDDKWNEVDSNAISDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFL 98
Query: 254 KRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYL 433
KR+L+ RM+ + DHIN + S L+ + I + +++ +LL SLP SYD + L
Sbjct: 99 KRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINL 158
Query: 434 LSGKTDEGEDKDKLVFDDVV-SALQAKALRKQEFSDEA---QVEGLFV------DXXXXX 583
+ D LVFDDV S L ++ RK + + +A Q E L V +
Sbjct: 159 TNNNP-----VDSLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSG 213
Query: 584 XXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEKRE--KSDSKNVVASVAEGSEA 757
+++CY C K GH++ +C + R E +E S+++ VAS ++ E
Sbjct: 214 SQNHGRSKSRSKKNVKCYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEI 273
Query: 758 LEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNA 937
L + E + + L+D W++DSGA++HM ++ F TY ++GG+V MGN +A
Sbjct: 274 L------YSEATIVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327
Query: 938 CKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNG 1114
+ G+GT++++ G I T+ EVRHV L+K+L+SLG ++S G K E G +K+
Sbjct: 328 LEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGA 387
Query: 1115 SLKMTGERH-GNLYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSK 1291
+ M E+ NL+ L+G+ + S E EST +WH++LGHMSE+G+ +LS +
Sbjct: 388 LVLMKAEKICANLFMLKGETLQEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSER 444
Query: 1292 GLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWF 1471
L G K+ L FCEHC+ KQ R F ++ ++ +LD IHSDVW S +S GGA++
Sbjct: 445 KLPPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYM 503
Query: 1472 VTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEF 1651
VTFIDD+SRR W+Y +K K++V VFK++K VE + G+ +K +R+DNGGEY + F
Sbjct: 504 VTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAF 563
Query: 1652 CEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNR 1831
C+++GI R FTV TPQQNGVAERMNRTL ER R ML A L +WAEA TACY+VNR
Sbjct: 564 CKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNR 623
Query: 1832 SPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGV 2002
SPSTAI K+ ME+WTG +YS L FGCP Y ++ +E KL +++K IFLGY GV
Sbjct: 624 SPSTAIGLKTAMEMWTGKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGV 683
Query: 2003 KGYRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPS 2182
KGYRLW P +K +ISRDV F E D + D D V+++
Sbjct: 684 KGYRLWDPTAHKIVISRDVIFVE----DQLQRKDGDDGT--------------VKEK--- 722
Query: 2183 SSTIXXXXXXXXXXXXXXXXXXXXSTQQQIEN-IPSLT-SQRERRPPT---RYGFDEYAS 2347
S T+ Q+ +E+ P + S RERRPPT Y + +
Sbjct: 723 SETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVA 782
Query: 2348 YALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVY 2527
Y L + EP TF EA+++ W TAM EE+++LHKN TWELV LP GRK IG KWVY
Sbjct: 783 YCLLTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVY 842
Query: 2528 TVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFD 2704
+K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T++R++LA A FD
Sbjct: 843 KIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFD 896
Query: 2705 LELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFD 2884
L LEQLDVKTAFLHG LEE+IYM QP G+ GKE+ VCRL KSLYGLKQ+PR WYKRFD
Sbjct: 897 LHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFD 956
Query: 2885 TFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEM 3064
+F++ Y R D C Y+K+F F+ LLLYVDDML+A +K I LK QL+ EFEM
Sbjct: 957 SFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEM 1016
Query: 3065 KDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQL 3244
KDLGPA KILGM+I RDR+ K+ L+QK+YL+K+LRRF M + K+IS P+P KLS +
Sbjct: 1017 KDLGPANKILGMQIHRDRNNRKIWLSQKNYLKKILRRFNMQDCKSISTPLPVNFKLSSSM 1076
Query: 3245 CPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGIL 3424
CP+ E + MS+VPYA+AVGSLM+AM+CTRPD AQAVG VSRYMANPG HW AVK IL
Sbjct: 1077 CPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRIL 1136
Query: 3425 RYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPI 3604
RY+ GT ++ L + + V G+VDSD+AGD DK +ST+GY FTL+GA +SW S LQ +
Sbjct: 1137 RYIRGTSNVALCYGGSE-FTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTV 1195
Query: 3605 VALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTK 3784
VALSTTEAEY+A T+A KEA+W++ L+++LG Q+ + V CDSQSA+H+A+N +H+RTK
Sbjct: 1196 VALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTK 1255
Query: 3785 HIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKF 3910
HI ++YH VREVV++G V L K+ T++N AD+LTK + KF
Sbjct: 1256 HIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKSINTDKF 1297
>AAP54315.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 1109 bits (2869), Expect = 0.0
Identities = 616/1309 (47%), Positives = 803/1309 (61%), Gaps = 24/1309 (1%)
Frame = +2
Query: 77 KDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLK 256
+DW++++ D A S I L LS +I E +A LW KLE++ + KDLTS+++LK
Sbjct: 80 QDWSNDE-KKKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLK 138
Query: 257 RRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLL 436
++L ++ S+MDH++ F +I +DL +I V + D +ILLCSLP SY F D +L
Sbjct: 139 QKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTIL 198
Query: 437 SGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDE---AQVEGLFVDXXXXXXXXXXXXX 607
D L+ +V AL AK K+ E +Q EGL V
Sbjct: 199 YSH-------DTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSR 251
Query: 608 XXXXXDIE-----------CYYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSE 754
C YC++ GH ++C KL+ +D++ K K EG
Sbjct: 252 DKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKG--KKEEEGKA 309
Query: 755 ALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSN 934
A+ E ++ + +D W+LD+ +YHMCP++D F TY + GGTV+MG+
Sbjct: 310 AVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDT 369
Query: 935 ACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYN 1111
C+ G+GTVQ++ G I TLS+VRH+P+L++SLISL L+ GYKY+ G LKV
Sbjct: 370 PCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 429
Query: 1112 GSLKMTGE-RHGNLYFLRGDIVCGG-AMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLS 1285
+ M + + NLY LRG + G A VS S+ ++T LWHMRLGHMSE G++ LS
Sbjct: 430 SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRLGHMSEIGLAELS 487
Query: 1286 SKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGAR 1465
+ LL G+ KL FCEHCIFGK R F T+ H T+G+LDY+HSD+WGP+ S GGAR
Sbjct: 488 KRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGAR 547
Query: 1466 WFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLK 1645
+ +T +DD+SR+VW Y +KHK + +VFK+WKTMVE+Q + VK +R+DNG E+ K
Sbjct: 548 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFK 607
Query: 1646 EFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLV 1825
+C+ +GIV H+TV TPQQNGVAERMN ++ +ARCMLSNA L K +WAEAV+T CYL+
Sbjct: 608 SYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLI 667
Query: 1826 NRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVK 2005
NRSPS A K+P+EVW+G+ NYS+LRVFGC AY HV KL RA K IFLGYP GVK
Sbjct: 668 NRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVK 727
Query: 2006 GYRLWCPELNKFIISRDVTFNERAMLDSKKFTDWDSQIXXXXXXXXXXXXMQVEQRVPSS 2185
GY+LWCPE K +ISR+V F+E +L K T+ +QVE + S
Sbjct: 728 GYKLWCPETKKVVISRNVVFHESVILHDKPSTN-------VPVESQEKASVQVEHLISSG 780
Query: 2186 STIXXXXXXXXXXXXXXXXXXXXSTQQQIE-NIPSLTSQRERRPPTRYGFD-EYASYALS 2359
QQ + +I +R +PP RY + +YALS
Sbjct: 781 HAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALS 840
Query: 2360 VFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWV 2524
V E+ EP T+ EA+ + W TAM +EM+SL KNHTWE VKLPK +K I CKW+
Sbjct: 841 VAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWI 900
Query: 2525 YTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFD 2704
+ K+G+ S RYKARLVAKGY+Q G+D+N+VFSP++KH+SIR LL VA D
Sbjct: 901 FKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHD 956
Query: 2705 LELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFD 2884
ELEQ+DVKTAFLHG LEEDIYM QP G+ V GKE+ VCRL+KSLYGLKQSPRQWYKRFD
Sbjct: 957 YELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFD 1016
Query: 2885 TFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEM 3064
+FML QK+ RS YD CVY K GS +YLLLYVDDMLIAAK KSEI LK QLS EF M
Sbjct: 1017 SFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGM 1075
Query: 3065 KDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQL 3244
KDLG AKKILGMEITR+R GKL L+QK Y++KVLRRF MH+ K I +L
Sbjct: 1076 KDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPIIF----------RL 1125
Query: 3245 CPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGIL 3424
CP + ++E+MS+VPY++AVGSLMYAM D G V
Sbjct: 1126 CPQSDYDIEYMSRVPYSSAVGSLMYAMFGRSRD-----GFV------------------- 1161
Query: 3425 RYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPI 3604
G+VDSD+AGD D+ RS +GY FT+ G +SW++ LQ
Sbjct: 1162 ----------------------GYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQAT 1199
Query: 3605 VALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTK 3784
VALSTTEAEY+A++EA KEA+WLRGL +L + + + CDSQSAI L K+Q++H RTK
Sbjct: 1200 VALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTK 1259
Query: 3785 HIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3931
HID+RYH +R V+ G V++ K+ T DNPADM+TK V KFE C SL+
Sbjct: 1260 HIDVRYHIIRGVIVEGDVKVCKISTHDNPADMMTKPVSATKFELCSSLV 1308
>KYP67664.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 1105 bits (2857), Expect = 0.0
Identities = 594/1296 (45%), Positives = 810/1296 (62%), Gaps = 22/1296 (1%)
Frame = +2
Query: 107 LDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSP 286
+D A + + L ++ + + + +T+AK +W+ L KLY K L + ++LKR+L+ RMS
Sbjct: 1 MDDNAVANLHLAMADSVLSSIAEKTTAKEIWDTLVKLYEVKSLHTRIFLKRKLYTLRMSE 60
Query: 287 GKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDK 466
++ DHIN N + + LS I + +++ +LL SLP SYD + + +
Sbjct: 61 STAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNV-----V 115
Query: 467 DKLVFDDVVSALQAKALRKQEFSDEAQ----------VEGLFVDXXXXXXXXXXXXXXXX 616
+L F+DV A+ + R++ D + + G ++
Sbjct: 116 GRLSFEDVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRG 175
Query: 617 XXDIECYYCRKPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEV 793
+++CY C GH++ DC K+ K E S S+ VAS E E L E
Sbjct: 176 RKNLKCYNCGMRGHMKKDCWHKKSGGGKNSEASTSQGCVASTQEDGEILYS-------EA 228
Query: 794 LTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVR 973
++ + L++ W+LDSGA++HM P++D F TY ++GG+V MGN +A + GVGT++++
Sbjct: 229 ISSRGEKQLHECWILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLK 288
Query: 974 SH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGN 1147
+ G I T+ VRHV L+K+L+S+G L+ L K E G LKV + M E+ N
Sbjct: 289 MYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSN 348
Query: 1148 LYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLD 1327
LY L G+ + +I ++ E+T +WH RLGHMSE+G+ +L+ + LL G K L
Sbjct: 349 LYLLLGETLQEADASVAAISQE--EATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLP 406
Query: 1328 FCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVW 1507
FCEHC+ KQ R F ++ +LD IHSDVW S +S GGA++FV+FIDD+SRR+W
Sbjct: 407 FCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLW 465
Query: 1508 LYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTV 1687
+Y +K K++V VFK++K VE G+ +K +R+DNGGEYI+ FC+++GI R FTV
Sbjct: 466 VYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTV 525
Query: 1688 KGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPM 1867
TPQQNGVAERMNRTLLER R ML A L K +WAEAV TACYL+NRSPSTAI K+PM
Sbjct: 526 AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPM 585
Query: 1868 EVWTGNLVNYSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNK 2038
E+W G NYS+L VFGCP Y KL +++K IFLGY VKGYRLW P K
Sbjct: 586 EMWNGKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARK 645
Query: 2039 FIISRDVTFNERAMLDSKK--FTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXX 2212
++SRDV F E + ++ T D+ I + EQ
Sbjct: 646 VVVSRDVVFAETELQKEQENDSTIKDTSIVEIGGKSKKDDTSEAEQEHEEQEP------- 698
Query: 2213 XXXXXXXXXXXXXXSTQQQIENIPSLTSQRERRPPT---RYGFDEYASYALSVFEDEPFT 2383
+ ++++ I +RERR P+ Y + +Y L E EP T
Sbjct: 699 ------------DEANDEEVQQI-----RRERRRPSWHSDYVMASHDAYCLLTEEGEPST 741
Query: 2384 FEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKG 2560
F+EA+ ++ +W AM EE+++LH+N TWELV LPKGRK IGCKWVY +K DG +
Sbjct: 742 FQEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQVE- 800
Query: 2561 IVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAF 2740
RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T+IRV+LA A F+L LEQLDVKTAF
Sbjct: 801 -----RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAF 855
Query: 2741 LHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSK 2920
LHG L+E+IYM QP G++ GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++ Y R
Sbjct: 856 LHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLS 915
Query: 2921 YDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGM 3100
D C Y+ +F F+ LLLYVDDML+ +K +I LK QL+ EF+MKDLGPA KILGM
Sbjct: 916 SDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGM 975
Query: 3101 EITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMS 3280
+I RDR ++ L+QK+YL KVLRRF M + K IS P+P KLS + P+ E MS
Sbjct: 976 QIHRDRKNRRIWLSQKNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMS 1035
Query: 3281 KVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLV 3460
+VPYA+AVGSLMYAM+CTRPD AQAVG VSR+MA+PGR HW VK ILRY+ GT D+ L
Sbjct: 1036 RVPYASAVGSLMYAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALC 1095
Query: 3461 FEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIA 3640
FE + V G+VDSD+AGD DK +ST+GY FTL+G +SW S LQ +VALSTTEAEY+A
Sbjct: 1096 FEGSEFF-VRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMA 1154
Query: 3641 VTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREV 3820
T+A KEA+W++ L+++LG Q + V CDSQSA+H+A+N +H+RTKHI I+YH VREV
Sbjct: 1155 ATQACKEAIWIQRLLEELGHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREV 1214
Query: 3821 VDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSL 3928
V+ G V + K+ T+DN AD++TK V KF C SL
Sbjct: 1215 VEEGKVDMQKIHTKDNIADVMTKPVNTDKFTWCRSL 1250
>KYP36645.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 1103 bits (2854), Expect = 0.0
Identities = 593/1296 (45%), Positives = 811/1296 (62%), Gaps = 22/1296 (1%)
Frame = +2
Query: 107 LDLMACSTIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSP 286
+D A + + L ++ + + + +T+AK +W+ L KLY K L + ++LKR+L+ RMS
Sbjct: 1 MDDNAVANLHLAMADSVLSSIAEKTTAKEIWDTLVKLYEVKSLHTRIFLKRKLYTLRMSE 60
Query: 287 GKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDK 466
++ DHIN N + + LS I + +++ +LL SLP SYD + + +
Sbjct: 61 STAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNV-----V 115
Query: 467 DKLVFDDVVSALQAKALRKQEFSDEAQ----------VEGLFVDXXXXXXXXXXXXXXXX 616
+L F+DV A+ + R++ D + + G ++
Sbjct: 116 GRLSFEDVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRG 175
Query: 617 XXDIECYYCRKPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEV 793
+++CY C GH++ DC K+ K E S S+ VAS E E L E
Sbjct: 176 RKNLKCYNCGMRGHMKKDCWHKKSGGGKNSEASTSQGCVASTQEDGEILYS-------EA 228
Query: 794 LTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVR 973
++ + L++ W+LDSGA++HM P++D F TY ++GG+V MGN +A + GVGT++++
Sbjct: 229 ISSRGEKQLHECWILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLK 288
Query: 974 SH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGN 1147
+ G I T+ VRHV L+K+L+S+G L+ L K E G LKV + M E+ N
Sbjct: 289 MYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVVMKAEKITSN 348
Query: 1148 LYFLRGDIVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLD 1327
LY L G+ + +I ++ E+T +WH RLGHMSE+G+ +L+ + LL G K L
Sbjct: 349 LYLLLGETLQEADASVAAISQE--EATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLP 406
Query: 1328 FCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVW 1507
FCEHC+ KQ R F ++ +LD IHSDVW S +S GGA++FV+FIDD+SRR+W
Sbjct: 407 FCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLW 465
Query: 1508 LYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTV 1687
+Y +K K++V VFK++K VE G+ +K +R+DNGGEYI+ FC+++GI R FTV
Sbjct: 466 VYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTV 525
Query: 1688 KGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPM 1867
TPQQNGVAERMNRTLLER R ML A L K +WAEAV TACYL+NRSPSTAI K+PM
Sbjct: 526 AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPM 585
Query: 1868 EVWTGNLVNYSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNK 2038
E+W+G NYS+L VFGCP Y KL +++K IFLGY VKGYRLW P K
Sbjct: 586 EMWSGKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARK 645
Query: 2039 FIISRDVTFNERAMLDSKK--FTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXX 2212
++SRDV F E + ++ T D+ I + EQ
Sbjct: 646 VVVSRDVVFAETELQKEQENDSTIKDTSIVEIGGKSKKDDTSEAEQEHEEQEP------- 698
Query: 2213 XXXXXXXXXXXXXXSTQQQIENIPSLTSQRERRPPT---RYGFDEYASYALSVFEDEPFT 2383
+ ++++ I +RERR P+ Y + +Y L E EP T
Sbjct: 699 ------------DEANDEEVQQI-----RRERRRPSWHSDYVMASHDAYCLLTEEGEPST 741
Query: 2384 FEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKG 2560
F+EA+ ++ +W AM EE+++LH+N TWELV LPKGRK IGCKWVY +K DG +
Sbjct: 742 FQEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQVE- 800
Query: 2561 IVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAF 2740
RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T+IRV+LA A F+L LEQLDVKTAF
Sbjct: 801 -----RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAF 855
Query: 2741 LHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSK 2920
LHG L+E+IYM QP G++ GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++ Y R
Sbjct: 856 LHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLS 915
Query: 2921 YDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGM 3100
D C Y+ +F F+ LLLYVDDML+ +K +I LK QL+ EF+MKDLGPA KILGM
Sbjct: 916 SDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGM 975
Query: 3101 EITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMS 3280
+I RD+ K+ L+Q++YL KVLRRF M + K IS P+P KLS + P+ E MS
Sbjct: 976 QIHRDKKDRKIWLSQRNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMS 1035
Query: 3281 KVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLV 3460
+VPYA+AVGSLMYAM+CTRPD AQAVG VSR+MA+PGR HW VK ILRY+ GT D+ L
Sbjct: 1036 RVPYASAVGSLMYAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALC 1095
Query: 3461 FEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIA 3640
FE + V G+VDSD+AGD DK +ST+GY FTL+G +SW S LQ +VALSTTEAEY+A
Sbjct: 1096 FEGSEFF-VRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMA 1154
Query: 3641 VTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREV 3820
T+A KEA+W++ L+++LG Q + V CDSQSA+H+A+N +H+RTKHI I+YH VREV
Sbjct: 1155 ATQACKEAIWIQRLLEELGHKQEKITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREV 1214
Query: 3821 VDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSL 3928
V+ G V + K+ T+DN AD++TK V KF C SL
Sbjct: 1215 VEEGKVDMQKIHTKDNIADVMTKPVNTDKFTWCRSL 1250