BLASTX nr result
ID: Papaver31_contig00054549
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver31_contig00054549
(603 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008081480.1| ribosomal protein L20 (chloroplast) [Trochod... 44 2e-06
gb|AKR80834.1| ribosomal protein L20 (plastid) [Xerophyta retine... 40 3e-06
ref|YP_009092059.1| ribosomal protein L20 (chloroplast) [Spirode... 40 3e-06
ref|YP_008081388.1| ribosomal protein L20 (chloroplast) [Tetrace... 42 3e-06
gb|ADD30299.1| ribosomal protein L20 (chloroplast) [Meliosma aff... 42 4e-06
ref|YP_001542470.1| ribosomal protein L20 [Ceratophyllum demersu... 42 6e-06
gb|AKZ23591.1| ribosomal protein L20 (plastid) [Convolvulus arve... 41 1e-05
gb|ADD30305.1| ribosomal protein L20 (chloroplast) [Berberidopsi... 41 1e-05
>ref|YP_008081480.1| ribosomal protein L20 (chloroplast) [Trochodendron aralioides]
gi|290487866|gb|ADD30317.1| ribosomal protein L20
(chloroplast) [Trochodendron aralioides]
gi|479279319|gb|AGJ72172.1| ribosomal protein L20
(chloroplast) [Trochodendron aralioides]
Length = 117
Score = 43.5 bits (101), Expect(2) = 2e-06
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRVS 520
RDRGRQKRDFR L ITRI AVI E RVS
Sbjct: 48 RDRGRQKRDFRRLWITRINAVIRENRVS 75
Score = 35.8 bits (81), Expect(2) = 2e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -3
Query: 517 SYIYSRLTHGLYKGQGLLDRKILA 446
SY YSRL H LYK Q LL+RKILA
Sbjct: 75 SYSYSRLIHDLYKRQLLLNRKILA 98
>gb|AKR80834.1| ribosomal protein L20 (plastid) [Xerophyta retinervis]
Length = 121
Score = 40.4 bits (93), Expect(2) = 3e-06
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRVS 520
RDRGRQKRDFR L ITRI AV E +VS
Sbjct: 48 RDRGRQKRDFRRLWITRINAVTREKKVS 75
Score = 38.1 bits (87), Expect(2) = 3e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -3
Query: 517 SYIYSRLTHGLYKGQGLLDRKILA 446
SY YSR H LYKGQ LL+RKILA
Sbjct: 75 SYSYSRFIHNLYKGQMLLNRKILA 98
>ref|YP_009092059.1| ribosomal protein L20 (chloroplast) [Spirodela polyrhiza]
gi|672374535|gb|AIJ27458.1| Ribosomal protein L20
(chloroplast) [Spirodela polyrhiza]
Length = 117
Score = 39.7 bits (91), Expect(2) = 3e-06
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRVS 520
RDRGRQKRDFR L ITRI AV E VS
Sbjct: 48 RDRGRQKRDFRRLWITRINAVTRENEVS 75
Score = 38.9 bits (89), Expect(2) = 3e-06
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -3
Query: 517 SYIYSRLTHGLYKGQGLLDRKILA 446
SY YSRL HGLYK Q LL+RKILA
Sbjct: 75 SYSYSRLIHGLYKRQVLLNRKILA 98
>ref|YP_008081388.1| ribosomal protein L20 (chloroplast) [Tetracentron sinense]
gi|479279226|gb|AGJ72080.1| ribosomal protein L20
(chloroplast) [Tetracentron sinense]
Length = 117
Score = 42.4 bits (98), Expect(2) = 3e-06
Identities = 22/28 (78%), Positives = 23/28 (82%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRVS 520
RDRGRQKRDFR L ITRI AVI + RVS
Sbjct: 48 RDRGRQKRDFRRLWITRINAVIRDNRVS 75
Score = 35.8 bits (81), Expect(2) = 3e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -3
Query: 517 SYIYSRLTHGLYKGQGLLDRKILA 446
SY YSRL H LYK Q LL+RKILA
Sbjct: 75 SYSYSRLIHDLYKRQLLLNRKILA 98
>gb|ADD30299.1| ribosomal protein L20 (chloroplast) [Meliosma aff. cuneifolia Moore
333]
Length = 117
Score = 42.0 bits (97), Expect(2) = 4e-06
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRV 523
RDRGRQKRDFR L ITRI AVI E RV
Sbjct: 48 RDRGRQKRDFRRLWITRINAVIRENRV 74
Score = 35.8 bits (81), Expect(2) = 4e-06
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = -3
Query: 514 YIYSRLTHGLYKGQGLLDRKILA 446
Y YSRL H LYKGQ L+RKILA
Sbjct: 76 YSYSRLIHDLYKGQLFLNRKILA 98
>ref|YP_001542470.1| ribosomal protein L20 [Ceratophyllum demersum]
gi|215274785|sp|A8SEC6.1|RK20_CERDE RecName: Full=50S
ribosomal protein L20, chloroplastic
gi|148508466|gb|ABQ81473.1| ribosomal protein L20
(chloroplast) [Ceratophyllum demersum]
gi|227481142|emb|CAP62521.1| ribosomal protein L20
[Ceratophyllum demersum]
Length = 117
Score = 41.6 bits (96), Expect(2) = 6e-06
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRVS 520
RDRGRQKRDFR L ITRI AV E RVS
Sbjct: 48 RDRGRQKRDFRRLWITRINAVTHENRVS 75
Score = 35.8 bits (81), Expect(2) = 6e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -3
Query: 517 SYIYSRLTHGLYKGQGLLDRKILA 446
SY YSRL H LYK Q LL+RKILA
Sbjct: 75 SYSYSRLIHDLYKKQLLLNRKILA 98
>gb|AKZ23591.1| ribosomal protein L20 (plastid) [Convolvulus arvensis]
Length = 116
Score = 41.2 bits (95), Expect(2) = 1e-05
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRVS 520
RDRGRQKRDFR L ITRI AVI E VS
Sbjct: 48 RDRGRQKRDFRRLWITRINAVIREIGVS 75
Score = 35.4 bits (80), Expect(2) = 1e-05
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -3
Query: 517 SYIYSRLTHGLYKGQGLLDRKILA 446
SY YS+L H LYK Q LL+RKILA
Sbjct: 75 SYSYSKLIHDLYKNQLLLNRKILA 98
>gb|ADD30305.1| ribosomal protein L20 (chloroplast) [Berberidopsis corallina]
Length = 117
Score = 40.8 bits (94), Expect(2) = 1e-05
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = -1
Query: 603 RDRGRQKRDFRCLGITRITAVICEYRVS 520
RDR RQKRDFR L ITRI AVI E RVS
Sbjct: 48 RDRDRQKRDFRRLWITRINAVIRENRVS 75
Score = 35.8 bits (81), Expect(2) = 1e-05
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -3
Query: 517 SYIYSRLTHGLYKGQGLLDRKILA 446
SY YSRL H LYK Q LL+RKILA
Sbjct: 75 SYSYSRLIHDLYKRQLLLNRKILA 98