BLASTX nr result
ID: Papaver31_contig00048126
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver31_contig00048126
(1692 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum] 734 0.0
gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum] 732 0.0
gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedice... 727 0.0
gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (ch... 726 0.0
ref|YP_009115673.1| RNA polymerase beta [Lysimachia coreana] gi|... 723 0.0
ref|YP_009115886.1| RNA polymerase beta [Scrophularia takesimens... 721 0.0
gb|AHW52175.1| RNA polymerase beta (chloroplast) [Rhazya stricta] 721 0.0
ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum... 721 0.0
gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (ch... 720 0.0
ref|YP_004935657.1| RNA polymerase beta' subunit (chloroplast) [... 719 0.0
gb|AKZ23891.1| RNA polymerase beta subunit (plastid) [Veronica a... 719 0.0
gb|AHE41641.1| RNA polymerase beta' subunit protein, partial (ch... 719 0.0
gb|AHE41636.1| RNA polymerase beta' subunit protein, partial (ch... 719 0.0
ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (c... 719 0.0
ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea ca... 719 0.0
gb|AII17892.1| RNA polymerase beta subunit, partial (chloroplast... 718 0.0
gb|AKZ29737.1| RNA polymerase beta (chloroplast) [Panax quinquef... 717 0.0
ref|YP_009047923.1| DNA-directed RNA polymerase beta' chain (chl... 717 0.0
gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (ch... 717 0.0
ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (c... 717 0.0
>gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum]
Length = 682
Score = 734 bits (1895), Expect = 0.0
Identities = 375/406 (92%), Positives = 377/406 (92%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
Y + SFARTVAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE
Sbjct: 142 YCDVSFARTVAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 201
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA
Sbjct: 202 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 261
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 262 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 321
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 441
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 547
>gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum]
Length = 682
Score = 732 bits (1889), Expect = 0.0
Identities = 374/406 (92%), Positives = 376/406 (92%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
Y + SFARTVAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE
Sbjct: 142 YCDVSFARTVAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 201
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA
Sbjct: 202 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 261
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 262 EWMVLCLLPVLPPDLRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 321
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREMAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 441
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPL 501
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 547
>gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedicellaris]
Length = 718
Score = 727 bits (1876), Expect = 0.0
Identities = 369/435 (84%), Positives = 386/435 (88%)
Frame = -2
Query: 1307 FI*CNYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWK 1128
FI C YLSRM+GN VRF RG +YPNFSFAR + KKPTFLRLRGLFEYEIQSWK
Sbjct: 153 FIWCTYLSRMKGNIHVRFRRGGAPIE--SYPNFSFARPITKKPTFLRLRGLFEYEIQSWK 210
Query: 1127 YSIPLFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEW 948
YSIPLFFTTQGFDTFRNREISTGA AIREQLADLDLR++I+ SL+EWK+LGEE TGNEW
Sbjct: 211 YSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIVIENSLLEWKDLGEEEHTGNEW 270
Query: 947 EDRKIGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDI 768
EDRK+GRRKDFLVRRMELAKHF+RTN+E EWMV PIIQIDGGKLMSSDI
Sbjct: 271 EDRKVGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDI 330
Query: 767 NELYRRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKV 588
NELYRRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKV
Sbjct: 331 NELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKV 390
Query: 587 YKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIR 408
YKSFSD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIR
Sbjct: 391 YKSFSDLIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIR 450
Query: 407 GLIRQQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVE 228
GLIRQ +ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVE
Sbjct: 451 GLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVE 510
Query: 227 GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPT 48
GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGDPIS+PT
Sbjct: 511 GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPT 570
Query: 47 QDMLMGLYVLTIGNR 3
QDML+GLYVLT NR
Sbjct: 571 QDMLIGLYVLTSENR 585
>gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Hamamelis mollis]
Length = 639
Score = 726 bits (1874), Expect = 0.0
Identities = 366/406 (90%), Positives = 375/406 (92%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
YPNFSFAR +AKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA+AIRE
Sbjct: 124 YPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAAAIRE 183
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLR+IID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+E
Sbjct: 184 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 243
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 244 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 303
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 304 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 363
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREKEPIVWEIL
Sbjct: 364 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 423
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 424 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 483
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
SLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML+GLYVLT GNR
Sbjct: 484 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNR 529
>ref|YP_009115673.1| RNA polymerase beta [Lysimachia coreana] gi|743182456|gb|AJC00261.1|
RNA polymerase beta [Lysimachia coreana]
Length = 686
Score = 723 bits (1865), Expect = 0.0
Identities = 367/431 (85%), Positives = 385/431 (89%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR + KKPTFLRLRG FEYEIQSWKYSIP
Sbjct: 124 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIP 180
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNREISTGASAIREQLADLDLR+IID SLVEWKELGEEGPTGNEWEDRK
Sbjct: 181 LFFTTQGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK 240
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
+GRRKDFLVRRMELAKHFIRTN+E +WMV PIIQIDGGKLMSSDINELY
Sbjct: 241 VGRRKDFLVRRMELAKHFIRTNIEPQWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 300
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 301 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 361 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 420
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q +ASNIGVAK+KIREKEPIVW+ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 421 QHLASNIGVAKNKIREKEPIVWQILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH+NLLSPAIGDPIS+PTQDML
Sbjct: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHINLLSPAIGDPISVPTQDML 540
Query: 35 MGLYVLTIGNR 3
MGLY+LT GNR
Sbjct: 541 MGLYILTSGNR 551
>ref|YP_009115886.1| RNA polymerase beta [Scrophularia takesimensis]
gi|744673730|gb|AJD00715.1| RNA polymerase beta
[Scrophularia takesimensis]
Length = 684
Score = 721 bits (1862), Expect = 0.0
Identities = 365/431 (84%), Positives = 385/431 (89%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR + KKPTFLRLRGLFEYEIQSWKYSIP
Sbjct: 124 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIP 180
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNREISTGA AIREQLADLDLR+I+D SLVEWKELGEEGPTGNEWEDRK
Sbjct: 181 LFFTTQGFDTFRNREISTGAGAIREQLADLDLRIILDNSLVEWKELGEEGPTGNEWEDRK 240
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
+GRRKDFLVRRMELAKHF+RTN+E EWMV PIIQIDGGKLMSSDINELY
Sbjct: 241 VGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 300
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 301 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 361 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 420
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q +ASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLH+LGIQAFQP+LVEGRAI
Sbjct: 421 QHLASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHKLGIQAFQPVLVEGRAI 480
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML
Sbjct: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 540
Query: 35 MGLYVLTIGNR 3
+GLYVLT G+R
Sbjct: 541 IGLYVLTSGSR 551
>gb|AHW52175.1| RNA polymerase beta (chloroplast) [Rhazya stricta]
Length = 684
Score = 721 bits (1860), Expect = 0.0
Identities = 364/414 (87%), Positives = 375/414 (90%)
Frame = -2
Query: 1244 EILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREIS 1065
E L Y YPNFSFAR + KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREIS
Sbjct: 138 EGLVYCDVYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREIS 197
Query: 1064 TGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKH 885
TGA AIREQLADLDLRLI++ SLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKH
Sbjct: 198 TGAGAIREQLADLDLRLILENSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKH 257
Query: 884 FIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXX 705
FIRTN+E EWMV PIIQIDGGKLMSSDINELYRRVIY
Sbjct: 258 FIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTS 317
Query: 704 XXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLG 525
TPGEL+MCQEKLVQEAVDTLLDNGIRGQPM+DGHNKVYKSFSDVIEGKEGRFRETLLG
Sbjct: 318 RSTPGELLMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIEGKEGRFRETLLG 377
Query: 524 KRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREK 345
KRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREK
Sbjct: 378 KRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREK 437
Query: 344 EPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGD 165
EPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGD
Sbjct: 438 EPIVWEILQEVMEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGD 497
Query: 164 QMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
QMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDMLMGLYVLT GNR
Sbjct: 498 QMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 551
>ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum chinense]
gi|403226772|gb|AFR25651.1| RNA polymerase beta
(chloroplast) [Penthorum chinense]
Length = 686
Score = 721 bits (1860), Expect = 0.0
Identities = 368/431 (85%), Positives = 383/431 (88%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR +AKKPTFLRLRGLFEYEIQSWKYSIP
Sbjct: 124 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIP 180
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNREISTGA AIREQL+DLDLRLIID SLVEWKELGEEG GNEWEDRK
Sbjct: 181 LFFTTQGFDTFRNREISTGAGAIREQLSDLDLRLIIDYSLVEWKELGEEGTAGNEWEDRK 240
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
IGRRKDFLVRRMELAKHFIRTN+E EWMV PIIQIDGGKLMSSDINELY
Sbjct: 241 IGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 300
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 301 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRET+LGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 361 SDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 420
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
+ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 421 HHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 480
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML
Sbjct: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 540
Query: 35 MGLYVLTIGNR 3
+GLYVLT GNR
Sbjct: 541 IGLYVLTSGNR 551
>gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Rhodoleia championii]
Length = 639
Score = 720 bits (1859), Expect = 0.0
Identities = 365/406 (89%), Positives = 373/406 (91%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
YPNFSFAR +AKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE
Sbjct: 124 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 183
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLR+IID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+E
Sbjct: 184 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 243
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 244 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 303
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 304 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 363
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREKEPIVWEIL
Sbjct: 364 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 423
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPL
Sbjct: 424 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPL 483
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
SLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML+GLYVLT GNR
Sbjct: 484 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNR 529
>ref|YP_004935657.1| RNA polymerase beta' subunit (chloroplast) [Sesamum indicum]
gi|347448286|gb|AEO92697.1| RNA polymerase beta' subunit
(chloroplast) [Sesamum indicum]
Length = 691
Score = 719 bits (1857), Expect = 0.0
Identities = 365/431 (84%), Positives = 384/431 (89%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR + KKPTFLRLRGLFEYEIQSWKYSIP
Sbjct: 131 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIP 187
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNREISTGA AIREQLADLDLR+I+D SLVEWKELGEEG TGNEWEDRK
Sbjct: 188 LFFTTQGFDTFRNREISTGAGAIREQLADLDLRIILDNSLVEWKELGEEGTTGNEWEDRK 247
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
+GRRKDFLVRRMELAKHF+RTN+E EWMV PIIQIDGGKLMSSDINELY
Sbjct: 248 VGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 307
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 308 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 367
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 368 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 427
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q +ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLH+LGIQ+FQP+LVEGRAI
Sbjct: 428 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHKLGIQSFQPVLVEGRAI 487
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML
Sbjct: 488 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 547
Query: 35 MGLYVLTIGNR 3
+GLYVLT GNR
Sbjct: 548 IGLYVLTSGNR 558
>gb|AKZ23891.1| RNA polymerase beta subunit (plastid) [Veronica americana]
Length = 691
Score = 719 bits (1856), Expect = 0.0
Identities = 364/431 (84%), Positives = 384/431 (89%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR + KKPTFLRLRGLFEYEIQSWKYSIP
Sbjct: 131 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIP 187
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNREISTGA AIREQLADLDLR+I+D SLVEWKELGEEGPTGNEWEDRK
Sbjct: 188 LFFTTQGFDTFRNREISTGAGAIREQLADLDLRIILDNSLVEWKELGEEGPTGNEWEDRK 247
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
+GRR+DFLVRRMELAKHF+RTN+E EWMV PI+QIDGGKLMSSDINELY
Sbjct: 248 VGRRRDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIVQIDGGKLMSSDINELY 307
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGEL+MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 308 RRVIYRNNTLTDLLTTSRSTPGELIMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 367
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 368 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 427
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q +ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLH+LGIQAFQPILVEGRAI
Sbjct: 428 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHKLGIQAFQPILVEGRAI 487
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFS MNLLSPAIGDPIS+PTQDML
Sbjct: 488 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSQMNLLSPAIGDPISVPTQDML 547
Query: 35 MGLYVLTIGNR 3
+GLYVLT GNR
Sbjct: 548 IGLYVLTSGNR 558
>gb|AHE41641.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Disanthus cercidifolius subsp. longipes]
Length = 621
Score = 719 bits (1856), Expect = 0.0
Identities = 364/405 (89%), Positives = 372/405 (91%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
YPNFSFAR +AKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA AIRE
Sbjct: 108 YPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 167
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLR+IID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+E
Sbjct: 168 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 227
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 228 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 287
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 288 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 347
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREKEPIVWEIL
Sbjct: 348 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 407
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPL
Sbjct: 408 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPL 467
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGN 6
SLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML+GLYVLT GN
Sbjct: 468 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGN 512
>gb|AHE41636.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Saxifraga stolonifera]
Length = 639
Score = 719 bits (1856), Expect = 0.0
Identities = 363/405 (89%), Positives = 372/405 (91%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
Y NFSFAR +AKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA AIRE
Sbjct: 124 YRNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 183
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLRLIID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+E
Sbjct: 184 QLADLDLRLIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 243
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 244 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLNDLLTTSRSTPGELV 303
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKL+QEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 304 MCQEKLIQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 363
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREKEPIVWEIL
Sbjct: 364 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 423
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 424 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 483
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGN 6
SLEAQAEARLLMFSHMNL+SPAIGDPIS+PTQDML+GLYVLT GN
Sbjct: 484 SLEAQAEARLLMFSHMNLVSPAIGDPISVPTQDMLIGLYVLTRGN 528
>ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
danzaiensis] gi|552546184|ref|YP_008593013.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia pitardii] gi|537362497|gb|AGU44304.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia danzaiensis] gi|537362765|gb|AGU44569.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia pitardii]
Length = 686
Score = 719 bits (1855), Expect = 0.0
Identities = 366/430 (85%), Positives = 381/430 (88%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR +AKKPTFLRLRG FEYEIQSWKYSIP
Sbjct: 124 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIP 180
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNRE+STGA IREQLADLDLR+IID SLVEWKELGEEGPTGNEWEDRK
Sbjct: 181 LFFTTQGFDTFRNREVSTGAGTIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK 240
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
IGRRKDFLVRRMELAKHFIRTN+E EWMV PIIQIDGGKLMSSDINELY
Sbjct: 241 IGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 300
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 301 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 361 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 420
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q +ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPIL+EGRAI
Sbjct: 421 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILMEGRAI 480
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNL SPAIGDPI +PTQDML
Sbjct: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLSSPAIGDPICVPTQDML 540
Query: 35 MGLYVLTIGN 6
MGLY+LT GN
Sbjct: 541 MGLYILTSGN 550
>ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea canadensis]
gi|374094587|gb|AEY84643.1| RNA polymerase beta
(chloroplast) [Elodea canadensis]
Length = 688
Score = 719 bits (1855), Expect = 0.0
Identities = 367/431 (85%), Positives = 384/431 (89%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G + GTYP+FSFAR + KKPTFLRLRGLFEYEIQSWKYSIP
Sbjct: 124 SYIANLLDKP-LKELEGLVYCDIGTYPDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIP 182
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGF+TFRNREISTGA AIREQLADLDLR+IID SLVEWKELG+E TGNEWEDRK
Sbjct: 183 LFFTTQGFETFRNREISTGAEAIREQLADLDLRIIIDNSLVEWKELGDEESTGNEWEDRK 242
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
I RRKDFLVRRMELAKHFIRTNVE EWMV PIIQIDGGKLMSSDINELY
Sbjct: 243 IRRRKDFLVRRMELAKHFIRTNVEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 302
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 303 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 362
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLPRE+AIELFQTFVIRGLIR
Sbjct: 363 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIR 422
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q VASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 423 QHVASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 482
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML
Sbjct: 483 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 542
Query: 35 MGLYVLTIGNR 3
+GLYVLTIGNR
Sbjct: 543 IGLYVLTIGNR 553
>gb|AII17892.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
plicatum]
Length = 540
Score = 718 bits (1854), Expect = 0.0
Identities = 363/406 (89%), Positives = 371/406 (91%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
YPNFSFAR + KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLR+IID SLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+E
Sbjct: 61 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 120
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 121 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 180
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 181 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 240
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREKEPIVWEIL
Sbjct: 241 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 300
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPL
Sbjct: 301 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPL 360
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
SLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDMLMGLYVLT GNR
Sbjct: 361 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 406
>gb|AKZ29737.1| RNA polymerase beta (chloroplast) [Panax quinquefolius]
Length = 692
Score = 717 bits (1852), Expect = 0.0
Identities = 362/406 (89%), Positives = 372/406 (91%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
YPNFSFAR +AKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA AIRE
Sbjct: 152 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 211
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLR+IID SLVEWKELGE+GPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+E
Sbjct: 212 QLADLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 271
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 272 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 331
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 332 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 391
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREKEPIVWEIL
Sbjct: 392 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 451
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPL
Sbjct: 452 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPL 511
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
SLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML+GLYVLT GNR
Sbjct: 512 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNR 557
>ref|YP_009047923.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Camellia
crapnelliana] gi|573014972|gb|AHF71556.1| DNA-directed
RNA polymerase beta' chain (chloroplast) [Camellia
crapnelliana]
Length = 686
Score = 717 bits (1852), Expect = 0.0
Identities = 365/430 (84%), Positives = 381/430 (88%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR +AKKPTFLRLRG FEYEIQSWKYSIP
Sbjct: 124 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIP 180
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNRE+STGA IREQLADLDLR+IID SLVEWKELGEEGPTGNEWEDRK
Sbjct: 181 LFFTTQGFDTFRNREVSTGAGTIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK 240
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
IGRRKDFLVRRMELAKHFIRTN+E EWMV PIIQIDGGKLMSSDINELY
Sbjct: 241 IGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 300
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 301 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 361 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 420
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q +ASNIGVAKSKIREKEPIVWE+LQEVMQGHPVLLNRAPTLHRLGIQAFQPIL+EGRAI
Sbjct: 421 QHLASNIGVAKSKIREKEPIVWEMLQEVMQGHPVLLNRAPTLHRLGIQAFQPILMEGRAI 480
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNL SPAIGDPI +PTQDML
Sbjct: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLSSPAIGDPICVPTQDML 540
Query: 35 MGLYVLTIGN 6
MGLY+LT GN
Sbjct: 541 MGLYILTSGN 550
>gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Daphniphyllum oldhamii]
Length = 639
Score = 717 bits (1852), Expect = 0.0
Identities = 361/406 (88%), Positives = 371/406 (91%)
Frame = -2
Query: 1220 YPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 1041
YPNFSFAR +AKKPTFLRLRG FEYEIQSWKYSIPLFFTT GFDTFRNREISTGA AIRE
Sbjct: 124 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 183
Query: 1040 QLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEA 861
QLADLDLR+IID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+E
Sbjct: 184 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 243
Query: 860 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 681
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 244 EWMVLGLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 303
Query: 680 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 501
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGR
Sbjct: 304 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGR 363
Query: 500 SVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIRQQVASNIGVAKSKIREKEPIVWEIL 321
SVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQ +ASNIGVAKSKIREKEPIVWEIL
Sbjct: 364 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHIASNIGVAKSKIREKEPIVWEIL 423
Query: 320 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 141
EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 424 HEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 483
Query: 140 SLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNR 3
SLEAQAEARLLMFSHMNLLSPAIGDPIS+PTQDML+GLYVLT GN+
Sbjct: 484 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNQ 529
>ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
impressinervis] gi|537362585|gb|AGU44391.1| DNA-directed
RNA polymerase beta' subunit (chloroplast) [Camellia
impressinervis]
Length = 686
Score = 717 bits (1852), Expect = 0.0
Identities = 365/430 (84%), Positives = 381/430 (88%)
Frame = -2
Query: 1295 NYLSRMRGNPRVRFLRGEILYYKGTYPNFSFARTVAKKPTFLRLRGLFEYEIQSWKYSIP 1116
+Y++ + P ++ L G L Y YPNFSFAR +AKKPTFLRLRG FEYEIQSWKYSIP
Sbjct: 124 SYIANLLDKP-LKELEG--LVYCDVYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIP 180
Query: 1115 LFFTTQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNEWEDRK 936
LFFTTQGFDTFRNRE+STGA IREQLADLDLR+IID SLVEWKELGEEGPTGNEWEDRK
Sbjct: 181 LFFTTQGFDTFRNREVSTGAGTIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK 240
Query: 935 IGRRKDFLVRRMELAKHFIRTNVEAEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELY 756
IGRRKDFLVRRMELAKHFIRTN+E EWMV PIIQIDGGKLMSSDINELY
Sbjct: 241 IGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 300
Query: 755 RRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 576
RRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 301 RRVIYRNNTLTNLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
Query: 575 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREVAIELFQTFVIRGLIR 396
SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIR
Sbjct: 361 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 420
Query: 395 QQVASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 216
Q +ASNIGVAKSKIREKEPIVWE+LQEVMQGHPVLLNRAPTLHRLGIQAFQPIL+EGRAI
Sbjct: 421 QHLASNIGVAKSKIREKEPIVWEMLQEVMQGHPVLLNRAPTLHRLGIQAFQPILMEGRAI 480
Query: 215 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISIPTQDML 36
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNL SPAIGDPI +PTQDML
Sbjct: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLSSPAIGDPICVPTQDML 540
Query: 35 MGLYVLTIGN 6
MGLY+LT GN
Sbjct: 541 MGLYILTSGN 550