BLASTX nr result
ID: Papaver31_contig00045911
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver31_contig00045911
(973 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 95 8e-25
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 94 3e-24
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 90 5e-24
ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259... 86 5e-23
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 86 2e-21
ref|YP_002000578.1| ribosomal protein S4 (mitochondrion) [Oryza ... 83 2e-21
gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella t... 86 5e-21
gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Am... 86 5e-21
ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum] 79 2e-19
gb|AJM70227.1| ribosomal protein S4 (mitochondrion) [Nicotiana t... 79 2e-19
ref|YP_009121977.1| ribosomal protein S4 (mitochondrion) [Hyoscy... 79 2e-19
ref|YP_009049648.1| ribosomal protein S4 (mitochondrion) [Capsic... 79 2e-19
gb|AKI85118.1| ribosomal protein S4 (mitochondrion) [Geranium in... 79 2e-19
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911... 80 2e-19
ref|XP_010314945.1| PREDICTED: ribosomal protein S4, mitochondri... 77 5e-19
gb|AKI85117.1| ribosomal protein S4 (mitochondrion) [Geranium ph... 75 1e-17
ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygr... 73 1e-17
ref|YP_009173840.1| ribosomal protein S4 (mitochondrion) [Populu... 90 1e-17
ref|XP_009386259.1| PREDICTED: ribosomal protein S4, mitochondri... 77 5e-17
ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgari... 70 6e-17
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gi|372450274|ref|YP_005090457.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197313|gb|AET62910.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197320|gb|AET62917.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
Length = 358
Score = 95.1 bits (235), Expect(2) = 8e-25
Identities = 66/175 (37%), Positives = 89/175 (50%), Gaps = 36/175 (20%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 619
+HR TS + FLL+LETRL V+LV HFC P ARQLISHRRVCV S+ +
Sbjct: 82 MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITRLK 140
Query: 618 ---GDLFSAPYSKLWLKS----------------------------RISPSEWLHLLKTK 532
GDL S + ++ R + +EW HLLKTK
Sbjct: 141 VSHGDLISFQENDARIRGEEIRRAFYIEILVDKIIGKFLDHPVRMWRRTKTEWFHLLKTK 200
Query: 531 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-CLGSHFAEHNKMKSHLYNF 370
G +L+KS F ++ Y + + + + + K CLGS FAEHN+MK +LY+F
Sbjct: 201 RGCRLLLKSRFLQKQLRYSMQKEYLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 255
Score = 47.4 bits (111), Expect(2) = 8e-25
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 789
+FK+C LL GNVW++EL+I+ R + N N++IQL T RKLSLF
Sbjct: 14 RFKTCRLLSGNVWNRELTIIQRRILRRLRNKKRSIKRKISPRKNMNSYIQLQTTRKLSLF 73
Query: 788 Y 786
Y
Sbjct: 74 Y 74
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 93.6 bits (231), Expect(2) = 3e-24
Identities = 68/181 (37%), Positives = 90/181 (49%), Gaps = 42/181 (23%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 619
+HR TS + FLL+LETRL V+LV HFC P ARQLISHRRVCV S+ +
Sbjct: 82 MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITRLK 140
Query: 618 ---GDLFSAPYSKLWLKS----------------------------RISPSEWLHLLKTK 532
GDL S + ++ R + +EW HLLKTK
Sbjct: 141 VSHGDLISFQENDARIRGEEIRRSFYIEILVEKIIGKFLDHPVRMWRRTKTEWFHLLKTK 200
Query: 531 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-------CLGSHFAEHNKMKSHLYN 373
G +L+KS F ++ Y + ED++ +K CLGS FAEHN+MK +LY+
Sbjct: 201 RGCRLLLKSRFLQQQLRYSMQE------EDFERTKKFGSEKVCLGSSFAEHNRMKRNLYH 254
Query: 372 F 370
F
Sbjct: 255 F 255
Score = 47.0 bits (110), Expect(2) = 3e-24
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 789
+FK+C LL GNVW++EL+I+ R + N N++IQL T RKLSLF
Sbjct: 14 RFKTCRLLSGNVWNRELTIIQRRILRRLRKKKRSIKRKIYPRENLNSYIQLQTTRKLSLF 73
Query: 788 Y 786
Y
Sbjct: 74 Y 74
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 89.7 bits (221), Expect(2) = 5e-24
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 33/172 (19%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 619
+HR RERT+ + FLL+LETRL V+LV HFC P ARQLISHRRVCV ++ F
Sbjct: 77 MHRGRERTS--YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNGMVNITHF 134
Query: 618 ----GDLFSAPYSKLWLKS-------------------------RISPSEWLHLLKTKAG 526
GD+ S + + + R + +EW LLKTK G
Sbjct: 135 KLSHGDIISFQENDVRTRGEEIKRSFYIEILVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 194
Query: 525 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
+L+KS F ++ + + CLGS FAEHN+MK +LY+F
Sbjct: 195 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 246
Score = 50.1 bits (118), Expect(2) = 5e-24
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LLLGNVW++EL+I+ R + + N N++IQL T RKLSLF
Sbjct: 9 RFKTCRLLLGNVWNRELTIIQRRILRRLRNKKRSIKRKIYSRENLNSYIQLQTTRKLSLF 68
Query: 788 Y 786
Y
Sbjct: 69 Y 69
>ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1|
ribosomal protein S4 [Cucurbita pepo]
Length = 356
Score = 86.3 bits (212), Expect(2) = 5e-23
Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 40/179 (22%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCV---------- 649
+HR RERT + FLL+LETRL V+LV HF P ARQLISHRRVCV
Sbjct: 80 MHRGRERTN--YIPFLLNLETRLDVILVRLHFSSTLPQARQLISHRRVCVNKGMVPITHF 137
Query: 648 -------------------KTVRRS------VQKFGDLFSAPYSKLWLKSRISPSEWLHL 544
+ +RRS V+K F ++W +++ +EW HL
Sbjct: 138 KVSHGDLISLKENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTK---TEWFHL 194
Query: 543 LKTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-CLGSHFAEHNKMKSHLYNF 370
LKTK G +L+KS F ++ S + + + K CLG FAEHN+MK +LY+F
Sbjct: 195 LKTKRGCRLLLKSRFLQQLRSSMQESDLERRKKLFGSDKVCLGCSFAEHNRMKRNLYHF 253
Score = 50.1 bits (118), Expect(2) = 5e-23
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LLLGNVW++EL+I+ R + + N N++IQL T RKLSLF
Sbjct: 12 RFKTCRLLLGNVWNRELTIIQRRILRKLRNKRRSIKRKIYSRENLNSYIQLQTTRKLSLF 71
Query: 788 Y 786
Y
Sbjct: 72 Y 72
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 86.3 bits (212), Expect(2) = 2e-21
Identities = 68/180 (37%), Positives = 89/180 (49%), Gaps = 42/180 (23%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 619
+HR TS + FLL+LETRL V+LV HF P ARQLISHRRVCV S+ F
Sbjct: 80 MHRGTERTS-YIPFLLNLETRLDVILVRLHFSETIPQARQLISHRRVCVNKGMVSITHFK 138
Query: 618 ---GDLFSAPYSKLWLKS----------------------------RISPSEWLHLLKTK 532
GDL S + ++ R + +EW HLLKTK
Sbjct: 139 VSHGDLISFQENDARIRGEEIRRFFYIEILVEKIIGKFLDHPVRMWRRTKTEWFHLLKTK 198
Query: 531 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-------CLGSHFAEHNKMKSHLYN 373
G +L+KS F ++ RS ++ ED + +K CLGS FAEHN+MK +LY+
Sbjct: 199 RGCRLLLKSRFLQQL-----RSSMQE--EDLERTKKFGLEKVCLGSSFAEHNRMKRNLYH 251
Score = 45.1 bits (105), Expect(2) = 2e-21
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+F++C LLLGNVW++EL+I+ R + + N N++IQL T RKLSL
Sbjct: 12 RFQTCRLLLGNVWNRELTIIQRRILRKLRNKKRSIKRKIYSRENLNSYIQLQTTRKLSLN 71
Query: 788 Y 786
Y
Sbjct: 72 Y 72
>ref|YP_002000578.1| ribosomal protein S4 (mitochondrion) [Oryza sativa Japonica Group]
gi|92700092|dbj|BAC19883.2| Ribosomal protein S4
(mitochondrion) [Oryza sativa Japonica Group]
Length = 352
Score = 83.2 bits (204), Expect(2) = 2e-21
Identities = 61/178 (34%), Positives = 85/178 (47%), Gaps = 37/178 (20%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRS 631
+HR RERT+ + FLL+ ETRL V+LV HFC P ARQLISHRRVC+ T+
Sbjct: 73 MHRGRERTS--YIPFLLNQETRLDVILVRLHFCDTLPQARQLISHRRVCLNNGLVTITHL 130
Query: 630 VQKFGDLFSAPYS-----------------------------KLWLKSRISPSEWLHLLK 538
GDL S + ++W K++ +EW LL
Sbjct: 131 KVSHGDLISFQENDARTRGEEIRRSFYIDILVGKIIGKLLPVRIWRKTK---TEWFRLLT 187
Query: 537 TKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNFTW 364
T+ +L+KS F + Y + + CLGS FAEHN+MK +L++F +
Sbjct: 188 TQRVCRLLLKSWFLQELRSYMQEEDLERTKKFGSAKVCLGSSFAEHNRMKRNLFHFKY 245
Score = 47.8 bits (112), Expect(2) = 2e-21
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 789
+FK+C LLLGNVW++ELS++ RN+ N N++I+L T RKLSL+
Sbjct: 5 RFKTCRLLLGNVWNRELSLIQRRILRRLRNKRRSIKRNLSQRENLNSNIKLQTTRKLSLY 64
Query: 788 Y 786
Y
Sbjct: 65 Y 65
>gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella trichopoda]
Length = 354
Score = 85.9 bits (211), Expect(2) = 5e-21
Identities = 67/178 (37%), Positives = 90/178 (50%), Gaps = 39/178 (21%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRSV 628
+HR TS + FLL+LETRL V+LV HFC P ARQLISHRR+CV ++ R
Sbjct: 73 MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETLPQARQLISHRRLCVNNGMVSITRLK 131
Query: 627 QKFGDLFSAP---------------YSKLWLKSRI-------------SPSEWLHLLKTK 532
GDL S Y ++ ++ I + +EW LLKTK
Sbjct: 132 VSHGDLISLKENYARTRGEERRRFFYIEILVEKMIGKFLDHPVRMWRRTKTEWFRLLKTK 191
Query: 531 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK----CLGSHFAEHNKMKSHLYNF 370
G +L+KS F ++ RS ++ ED + + CLGS FAEHN+MK +LY F
Sbjct: 192 RGCRLLLKSRFLQQL-----RSSMQE--EDLERTNPFGVCLGSSFAEHNRMKRNLYYF 242
Score = 43.9 bits (102), Expect(2) = 5e-21
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+F++C LLGNVW++EL+I+ R + + N N++I+L T RKLSLF
Sbjct: 5 RFQTCRPLLGNVWNRELTIIQRRILRRLRNKKRSIKRKISSRKNLNSYIKLQTTRKLSLF 64
Query: 788 Y 786
Y
Sbjct: 65 Y 65
>gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Amborella
trichopoda]
Length = 324
Score = 85.9 bits (211), Expect(2) = 5e-21
Identities = 67/178 (37%), Positives = 90/178 (50%), Gaps = 39/178 (21%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRSV 628
+HR TS + FLL+LETRL V+LV HFC P ARQLISHRR+CV ++ R
Sbjct: 73 MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETLPQARQLISHRRLCVNNGMVSITRLK 131
Query: 627 QKFGDLFSAP---------------YSKLWLKSRI-------------SPSEWLHLLKTK 532
GDL S Y ++ ++ I + +EW LLKTK
Sbjct: 132 VSHGDLISLKENYARTRGEERRRFFYIEILVEKMIGKFLDHPVRMWRRTKTEWFRLLKTK 191
Query: 531 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK----CLGSHFAEHNKMKSHLYNF 370
G +L+KS F ++ RS ++ ED + + CLGS FAEHN+MK +LY F
Sbjct: 192 RGCRLLLKSRFLQQL-----RSSMQE--EDLERTNPFGVCLGSSFAEHNRMKRNLYYF 242
Score = 43.9 bits (102), Expect(2) = 5e-21
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+F++C LLGNVW++EL+I+ R + + N N++I+L T RKLSLF
Sbjct: 5 RFQTCRPLLGNVWNRELTIIQRRILRRLRNKKRSIKRKISSRKNLNSYIKLQTTRKLSLF 64
Query: 788 Y 786
Y
Sbjct: 65 Y 65
>ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum]
Length = 349
Score = 79.0 bits (193), Expect(2) = 2e-19
Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 33/172 (19%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 619
+HR RERT+ + FLL+ ETR V+ V HFC P ARQ ISHRRVCV ++ F
Sbjct: 77 MHRGRERTS--YIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHF 134
Query: 618 ----GDLFSAP---------------YSKLWLKS----------RISPSEWLHLLKTKAG 526
GD+ S Y ++ ++ R + +EW LLKTK G
Sbjct: 135 KLSHGDIISFQENDARTRGEEIKRSFYIEISVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 194
Query: 525 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
+L+KS F ++ + + CLGS FAEHN+MK +LY+F
Sbjct: 195 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 246
Score = 45.4 bits (106), Expect(2) = 2e-19
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LL GNVW++EL+I+ R + + N N++IQ T RKLSLF
Sbjct: 9 RFKTCRLLSGNVWNRELTIIQRRILRRLRNKKRSIKRKIYSRENLNSYIQSQTTRKLSLF 68
Query: 788 Y 786
Y
Sbjct: 69 Y 69
>gb|AJM70227.1| ribosomal protein S4 (mitochondrion) [Nicotiana tabacum/Hyoscyamus
niger cybrid] gi|927029504|gb|ALD61798.1| ribosomal
protein S4 (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 79.0 bits (193), Expect(2) = 2e-19
Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 33/172 (19%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 619
+HR RERT+ + FLL+ ETR V+ V HFC P ARQ ISHRRVCV ++ F
Sbjct: 77 MHRGRERTS--YIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHF 134
Query: 618 ----GDLFSAP---------------YSKLWLKS----------RISPSEWLHLLKTKAG 526
GD+ S Y ++ ++ R + +EW LLKTK G
Sbjct: 135 KLSHGDIISFQENDARTRGEEIKRSFYIEISVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 194
Query: 525 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
+L+KS F ++ + + CLGS FAEHN+MK +LY+F
Sbjct: 195 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 246
Score = 45.4 bits (106), Expect(2) = 2e-19
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LL GNVW++EL+I+ R + + N N++IQ T RKLSLF
Sbjct: 9 RFKTCRLLSGNVWNRELTIIQRRILRRLRNKKRSIKRKIYSRENLNSYIQSQTTRKLSLF 68
Query: 788 Y 786
Y
Sbjct: 69 Y 69
>ref|YP_009121977.1| ribosomal protein S4 (mitochondrion) [Hyoscyamus niger]
gi|756142184|gb|AJK91395.1| ribosomal protein S4
(mitochondrion) [Hyoscyamus niger]
Length = 349
Score = 79.0 bits (193), Expect(2) = 2e-19
Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 33/172 (19%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 619
+HR RERT+ + FLL+ ETR V+ V HFC P ARQ ISHRRVCV ++ F
Sbjct: 77 MHRGRERTS--YIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHF 134
Query: 618 ----GDLFSAP---------------YSKLWLKS----------RISPSEWLHLLKTKAG 526
GD+ S Y ++ ++ R + +EW LLKTK G
Sbjct: 135 KLSHGDIISFQENDARTRGEEIKRSFYIEISVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 194
Query: 525 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
+L+KS F ++ + + CLGS FAEHN+MK +LY+F
Sbjct: 195 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 246
Score = 45.4 bits (106), Expect(2) = 2e-19
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LL GNVW++EL+I+ R + + N N++IQ T RKLSLF
Sbjct: 9 RFKTCRLLSGNVWNRELTIIQRRILRRLRNKKRSIKRKIYSRENLNSYIQSQTTRKLSLF 68
Query: 788 Y 786
Y
Sbjct: 69 Y 69
>ref|YP_009049648.1| ribosomal protein S4 (mitochondrion) [Capsicum annuum]
gi|667751775|gb|AIG89862.1| ribosomal protein S4
(mitochondrion) [Capsicum annuum]
gi|667751920|gb|AIG90006.1| ribosomal protein S4
(mitochondrion) [Capsicum annuum]
Length = 345
Score = 79.0 bits (193), Expect(2) = 2e-19
Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 33/172 (19%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 619
+HR RERT+ + FLL+ ETR V+ V HFC P ARQ ISHRRVCV ++ F
Sbjct: 73 MHRGRERTS--YIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHF 130
Query: 618 ----GDLFSAP---------------YSKLWLKS----------RISPSEWLHLLKTKAG 526
GD+ S Y ++ ++ R + +EW LLKTK G
Sbjct: 131 KLSHGDIISFQENDARTRGEEIKRSFYIEISVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 190
Query: 525 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
+L+KS F ++ + + CLGS FAEHN+MK +LY+F
Sbjct: 191 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 242
Score = 45.4 bits (106), Expect(2) = 2e-19
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LL GNVW++EL+I+ R + + N N++IQ T RKLSLF
Sbjct: 5 RFKTCRLLSGNVWNRELTIIQRRILRRLRNKKRSIKRKIYSRENLNSYIQSQTTRKLSLF 64
Query: 788 Y 786
Y
Sbjct: 65 Y 65
>gb|AKI85118.1| ribosomal protein S4 (mitochondrion) [Geranium incanum]
Length = 367
Score = 79.3 bits (194), Expect(2) = 2e-19
Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 42/185 (22%)
Frame = -2
Query: 798 VPFLLHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCV--KTVRR 634
+P R S + FLL+LETRL VLLV +HFC ARQLISH++VCV KTV
Sbjct: 100 LPITKMHRATGRSSYIPFLLNLETRLDVLLVRSHFCQTMAQARQLISHQKVCVNGKTVTT 159
Query: 633 SVQKF--GDLFS-------APYSKLW----LKSRI-----------------SPSEWLHL 544
+ K G L S Y ++W +K+ + S +EW+ L
Sbjct: 160 THMKVPQGSLISFQEKDAKTRYQEIWRYFYIKTLVDDIIGKFGDQRGRMWKKSKAEWIQL 219
Query: 543 LKTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-------CLGSHFAEHNKMKS 385
LK++ G +L+ S F + RH ED + SK CLGS F EH ++K
Sbjct: 220 LKSQRGIRVLLNSRFLKDL-------RHDLHVEDMERSKKFRSEKLCLGSSFTEHERLKR 272
Query: 384 HLYNF 370
+LY F
Sbjct: 273 NLYQF 277
Score = 44.7 bits (104), Expect(2) = 2e-19
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -3
Query: 968 TTQFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNV--VANQNTHIQLATCRKLS 795
T FK+C LL GNVW+KEL+ V V N N++I+L T RKLS
Sbjct: 35 TGGFKACRLLRGNVWNKELTWVQRRILGRLRRDKKNMRTGVHSKGNLNSYIRLQTTRKLS 94
Query: 794 LFY 786
LFY
Sbjct: 95 LFY 97
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
ribosomal protein S4 [Brassica napus]
Length = 362
Score = 80.5 bits (197), Expect(2) = 2e-19
Identities = 61/175 (34%), Positives = 82/175 (46%), Gaps = 39/175 (22%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCV----------- 649
+HR + TS + FLL+LETR V+L+ HF P ARQLISHRRVCV
Sbjct: 87 MHRGTKRTS-YIPFLLNLETRFDVILLRLHFLETIPQARQLISHRRVCVNKGMVSITHLK 145
Query: 648 ------------------KTVRRSVQK-------FGDLFSAPYSKLWLKSRISPSEWLHL 544
+ +RRS K G L P ++W +S+ +EW HL
Sbjct: 146 LSHGDIISFQENNAIIRGEEIRRSFYKEILVEKIIGKLLHQPL-RMWRRSK---TEWFHL 201
Query: 543 LKTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHL 379
LKTK G +L+KS F ++ + + CLGS FAEH +MK +L
Sbjct: 202 LKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL 256
Score = 43.5 bits (101), Expect(2) = 2e-19
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVANQ---NTHIQLATCRKLSL 792
+F++C LLLGNVW++EL+I+ + + ++ ++IQL T RKLSL
Sbjct: 18 RFQTCRLLLGNVWNRELTIIQRRILRRLRNRKRSIKKRKIYSKKYLTSYIQLQTTRKLSL 77
Query: 791 FY 786
FY
Sbjct: 78 FY 79
>ref|XP_010314945.1| PREDICTED: ribosomal protein S4, mitochondrial [Solanum
lycopersicum]
Length = 450
Score = 77.4 bits (189), Expect(2) = 5e-19
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 33/172 (19%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 619
+HR RERT+ + FLL+ ETR V+ V HFC P ARQ ISHRRVCV ++ F
Sbjct: 178 MHRGRERTS--YIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHF 235
Query: 618 ----GDLFSAP---------------YSKLWLKS----------RISPSEWLHLLKTKAG 526
GD+ S Y ++ ++ R + +EW LLKTK G
Sbjct: 236 KLSHGDIISFQENDARTRGEEIKRSFYIEISVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 295
Query: 525 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
+L+KS F ++ + + CLGS FAEHN+MK + Y+F
Sbjct: 296 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNFYHF 347
Score = 45.4 bits (106), Expect(2) = 5e-19
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LL GNVW++EL+I+ R + + N N++IQ T RKLSLF
Sbjct: 110 RFKTCRLLSGNVWNRELTIIQRRILGRLRNKKRSIKRKIYSRENLNSYIQSQTTRKLSLF 169
Query: 788 Y 786
Y
Sbjct: 170 Y 170
>gb|AKI85117.1| ribosomal protein S4 (mitochondrion) [Geranium phaeum]
Length = 367
Score = 74.7 bits (182), Expect(2) = 1e-17
Identities = 63/185 (34%), Positives = 86/185 (46%), Gaps = 42/185 (22%)
Frame = -2
Query: 798 VPFLLHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCV--KTVRR 634
+P R S + FLL+LETRL VLLV +HFC ARQLISH++VCV KTV
Sbjct: 100 LPITKMHRATGRSSYIPFLLNLETRLDVLLVRSHFCQTIAQARQLISHQKVCVNGKTVTT 159
Query: 633 SVQKF--GDLFS-------APYSKLW----LKSRI-----------------SPSEWLHL 544
+ K G L S Y ++W +K+ + S +EW+ L
Sbjct: 160 THMKVPQGSLISFQEKDAKTRYQEIWRYFYIKTLVDDIIGKFGDQRGRMWKKSKAEWIQL 219
Query: 543 LKTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-------CLGSHFAEHNKMKS 385
LK++ G +L+ S F + RH ED + SK CLGS EH ++K
Sbjct: 220 LKSQRGIRVLLNSRFLKDL-------RHDLQLEDMERSKKFRSEKLCLGSSLTEHQRLKR 272
Query: 384 HLYNF 370
L+ F
Sbjct: 273 SLFQF 277
Score = 43.9 bits (102), Expect(2) = 1e-17
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -3
Query: 968 TTQFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLS 795
T FK+C L+ GNVW+KEL+ V V + N N++I+L T RKLS
Sbjct: 35 TGGFKACRLIQGNVWNKELTWVQRRILGRLRRDKRNMRSGVHSRGNLNSYIRLQTTRKLS 94
Query: 794 LFY 786
LFY
Sbjct: 95 LFY 97
>ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygrometrica]
gi|340549497|gb|AEK53318.1| ribosomal protein S4
(mitochondrion) [Boea hygrometrica]
Length = 329
Score = 72.8 bits (177), Expect(2) = 1e-17
Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHF---CPPARQLISHRRVCVKTVRRSVQKF- 619
+HRR + + + FLL+ ETR V+ V HF P ARQ ISHRRVCV ++ F
Sbjct: 73 MHRRRKRS--YIPFLLNPETRSDVIPVRLHFRETIPQARQTISHRRVCVNNRMVNIIHFK 130
Query: 618 ---GDLFSAPYS----------------KLWLKSRISPSEWLHLLKTKAGSHILMKSDFF 496
GD+ S + ++W +++ +EW KT G +L+KS F
Sbjct: 131 VSHGDIISFQENDARTEKIIGKFLDRPVRMWRRTK---TEWFRKFKTLKGCRLLLKSQFL 187
Query: 495 ERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
++ +K CLGS+F EHN+MK +LY+F
Sbjct: 188 QQLRSSMQEEDTKKFGSK---KVCLGSYFDEHNRMKRNLYHF 226
Score = 45.8 bits (107), Expect(2) = 1e-17
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C LLLGNVW++EL+I+ R + + N N++IQ T RKLSLF
Sbjct: 5 RFKTCRLLLGNVWNRELTIIQRRILKRLRNKKRSIKRKIYSRKNLNSYIQSQTTRKLSLF 64
Query: 788 Y 786
+
Sbjct: 65 H 65
>ref|YP_009173840.1| ribosomal protein S4 (mitochondrion) [Populus tremula]
gi|948299283|ref|YP_009178738.1| ribosomal protein S4
(mitochondrion) [Populus tremula x Populus alba]
gi|936227481|gb|ALH07315.1| ribosomal protein S4
(mitochondrion) [Populus tremula]
gi|938485552|gb|ALJ49771.1| ribosomal protein S4
(mitochondrion) [Populus tremula x Populus alba]
Length = 322
Score = 90.1 bits (222), Expect(2) = 1e-17
Identities = 65/173 (37%), Positives = 86/173 (49%), Gaps = 34/173 (19%)
Frame = -2
Query: 786 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 619
+HR RERT+ + FLL+LE RL V+LV HFC P ARQLISHRRVCV S+
Sbjct: 49 MHRGRERTS--YIPFLLNLERRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITHL 106
Query: 618 ----GDLFSAPYSKLWLKS--------------------------RISPSEWLHLLKTKA 529
GD+ S + ++ R + +EW HLLKTK
Sbjct: 107 KVSHGDIISFQENDARIRGEEIRRSFYIEILVDKIIGKFLDHPVRRRTKTEWFHLLKTKR 166
Query: 528 GSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 370
G +L+KS F +R ++ + CLGS FAEHN+MK +LY+F
Sbjct: 167 GCRLLLKSPFLQRLRSSMQEEDLKRRKKFGFEKVCLGSSFAEHNRMKRNLYHF 219
Score = 28.5 bits (62), Expect(2) = 1e-17
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 839 NQNTHIQLATCRKLSLFY 786
N N++IQL T RKLS+FY
Sbjct: 26 NLNSYIQLQTTRKLSIFY 43
>ref|XP_009386259.1| PREDICTED: ribosomal protein S4, mitochondrial [Musa acuminata
subsp. malaccensis]
Length = 332
Score = 77.0 bits (188), Expect(2) = 5e-17
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRSV 628
L RR R + + FLL+ ETR V+LV HF P ARQ ISHR+V + ++ S
Sbjct: 73 LLRRGRERTSYIPFLLNQETRSDVILVRLHFSKTIPQARQPISHRKVSLNNGQVSITSSQ 132
Query: 627 QKFGDLFSAPYS--------------------------KLWLKSRISPSEWLHLLKTKAG 526
GDL S P + ++W +++ +EW LLKTK G
Sbjct: 133 VSHGDLISFPETIAEIQIRRSFYIDISVGKIIGKFLPVRMWRRTK---TEWFRLLKTKRG 189
Query: 525 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNFTW 364
+L++S F + + + CLGS FAEHN+MK +L++F +
Sbjct: 190 CRLLLQSGFLQELRDSMQEEDLERTKKFGSAKVCLGSSFAEHNRMKKNLFHFKY 243
Score = 39.3 bits (90), Expect(2) = 5e-17
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 789
+F++C LLLGNV ++ELS++ N+ N+N +I+ T RKLSL+
Sbjct: 5 RFQACRLLLGNVRNRELSLIQRSILRRLRNKRRSIQINLSRRENRNCYIKSQTTRKLSLY 64
Query: 788 Y 786
Y
Sbjct: 65 Y 65
>ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|346683270|ref|YP_004842202.1| ribosomal protein S4
[Beta macrocarpa] gi|87248052|gb|ABD36080.1| ribosomal
protein S4 (mitochondrion) [Beta vulgaris subsp.
vulgaris] gi|148491424|dbj|BAA99356.2| ribosomal protein
S4 (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|320148708|emb|CBJ23346.1| ribosomal protein S4 [Beta
vulgaris subsp. maritima] gi|345500188|emb|CBX25007.1|
ribosomal protein S4 [Beta macrocarpa]
gi|384939188|emb|CBL52035.1| ribosoma lprotein S4
(mitochondrion) [Beta vulgaris subsp. maritima]
Length = 315
Score = 70.5 bits (171), Expect(2) = 6e-17
Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 51/189 (26%)
Frame = -2
Query: 786 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 619
+HRR + TS + FLL+LETRL V+LV HFC P ARQLISHR+VCV ++ F
Sbjct: 73 MHRRTKRTS-YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRKVCVNNGIVNISHFK 131
Query: 618 ---GDLFSAP-------------------------------------------YSKLWLK 577
GD+ S + ++ ++
Sbjct: 132 VSHGDIISFQENYARTRGEEIRKFFYIKILVEKIIGKLRGHRGRLRSRSKTEWFRRVRMR 191
Query: 576 SRISPSEWLHLLKTKAGSHILMKSDFFERFAFYYARSRHRKI*E-DWQCSKCLGSHFAEH 400
SR S +EW LKTK G +L+K F ++ H + E D + +K GS AEH
Sbjct: 192 SR-SKTEWFRRLKTKKGCRLLLKDRFLQKL--------HSSMQEQDLERTKKFGSD-AEH 241
Query: 399 NKMKSHLYN 373
N+MK + Y+
Sbjct: 242 NRMKRNFYH 250
Score = 45.4 bits (106), Expect(2) = 6e-17
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -3
Query: 962 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 789
+FK+C L+ GNVW+KEL++ + + + N+N++IQL T RKLSLF
Sbjct: 5 RFKTCRLVSGNVWNKELTLSQRIALRKWRMKKKSIKKKMYSRKNRNSYIQLRTTRKLSLF 64
Query: 788 Y 786
Y
Sbjct: 65 Y 65