BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00039163
         (1512 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82754.1| retrofit [Oryza longistaminata]                        579   e-162
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  578   e-162
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   566   e-158
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   565   e-158
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   565   e-158
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   563   e-157
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   563   e-157
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   560   e-157
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   560   e-156
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   558   e-156
gb|KHN17953.1| Retrovirus-related Pol polyprotein from transposo...   557   e-155
ref|XP_008365969.1| PREDICTED: uncharacterized protein LOC103429...   557   e-155
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  555   e-155
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   555   e-155
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   554   e-155
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   554   e-155
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   553   e-154
ref|YP_514636.1| hypothetical protein OrsaiPp07 (mitochondrion) ...   553   e-154
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   551   e-154
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   551   e-154

>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  579 bits (1493), Expect = e-162
 Identities = 282/492 (57%), Positives = 364/492 (73%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            +T+ NALI+N T+ LV YE G N++G KWV+++K+  DGT++R+KARLVAKGF Q+ G+D
Sbjct: 954  ETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGID 1013

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W L+QLDV+NAFLHG LEE+VYM+QP G+   + P
Sbjct: 1014 YEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKP 1073

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            ++VCKL K+LYGLKQAPRAW+SRLS  LV++GF+ S AD+SLF       + +VLVYVDD
Sbjct: 1074 DYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDD 1133

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     + L+  L  EFALKD+GDL +FLG+EV +  NG++LTQ KY +DLLKRV
Sbjct: 1134 IIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRV 1193

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS + K    +G      D   YRS+VGALQYL LTRPDI+ +VNKVCQ
Sbjct: 1194 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1253

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRYL    + GLH++    + +H YSDADWAG +DDR+ST G+ 
Sbjct: 1254 FLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFA 1313

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTEAEY+ VA  T+EL+W+Q+LL ELG+ S     +WCD
Sbjct: 1314 VFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCD 1373

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANPVFHARTKHIE+DYHFVRERV+ K L + F+ S DQ+AD FTK L+A   
Sbjct: 1374 NLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLL 1433

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1434 ENFKHNLNLARL 1445


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  578 bits (1489), Expect = e-162
 Identities = 282/492 (57%), Positives = 364/492 (73%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            + + +ALI+N T+ LV YE G NV+G KWV+++K+  DGT++R+KARLVAKGF Q+ G+D
Sbjct: 945  EAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGID 1004

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W L+QLDV+NAFLHG LEE+VYM+QP G+   + P
Sbjct: 1005 YEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKP 1064

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            N+VCKL K+LYGLKQAPRAW+SRLS  LV++GF+ S AD+SLF       I +VLVYVDD
Sbjct: 1065 NYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1124

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            II+  S     + L+  L  EFALKD+GDL +FLG+EV +  NG+VLTQ KY +DLLKRV
Sbjct: 1125 IIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRV 1184

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS + K    +G      D T YRS+VGALQYL LTRPDI+ +VNKVCQ
Sbjct: 1185 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1244

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P  +HW  VKRILRYL    + GL+++    + +H YSDADWAG +DDR+ST G+ 
Sbjct: 1245 FLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFA 1304

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTEAEY+ VA  T+EL+W+Q+LL ELG+ S     +WCD
Sbjct: 1305 VFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCD 1364

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANPVFHARTKHIE+DYHFVRERV+ K L + F+ S DQ+AD FTK L+    
Sbjct: 1365 NLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSVRLL 1424

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1425 EHFKHNLNLTRL 1436


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  566 bits (1459), Expect = e-158
 Identities = 275/492 (55%), Positives = 360/492 (73%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            +T+ NALI+N T+ LV YE G N++G KWV++VK+  DGT++R+K RL+AKGF Q+ G+D
Sbjct: 957  ETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGID 1016

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W L+QLDV+N FLHG LEE+VYM+QP G+   + P
Sbjct: 1017 YEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESSSKP 1076

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            ++VCKL+K+LYGLKQAPRAW+SRLS  L ++GF+ S AD+SLF       I +VLVYVDD
Sbjct: 1077 DYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1136

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     + L+  L  EF LKD+GDL +FLG+EV +  NG++LTQ KY +D+LKRV
Sbjct: 1137 IIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRV 1196

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS + K    +G      D T YRS+VGALQYL LTRPDI+ +VNKVCQ
Sbjct: 1197 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1256

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRYL    + GLH++    + +H YSDAD AG +DDR+ST G+ 
Sbjct: 1257 FLHAPTTSHWIAVKRILRYLNQCTSLGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFA 1316

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTEAEY+ VA  T+EL+W+Q++L ELG+ S     +WCD
Sbjct: 1317 VFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCD 1376

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANPVFHA+TKHI +DYHFVRERV+ K L + F+ S DQ+AD FTK L+A   
Sbjct: 1377 NLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSARLL 1436

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1437 ENFKHNLNLTRL 1448


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  565 bits (1457), Expect = e-158
 Identities = 282/492 (57%), Positives = 360/492 (73%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D +  AL  N T+ LV  + G NV+  KWV+++K+  DG+++R+KARLVAKGF Q+ G+D
Sbjct: 756  DAEFMALQNNKTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 815

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W ++QLDV+NAFLHG LEE+VYMKQP GY D + P
Sbjct: 816  YEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLP 875

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
             +VCKL K+LYGLKQAPRAW+SRLS  L  +GF+GS AD+SLF       I +VL+YVDD
Sbjct: 876  GYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDD 935

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIVT S    +  L+  L  EFALKD+GDL +FLG+EV +   G+VLTQ KY++DLL+RV
Sbjct: 936  IIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLLRRV 995

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS++ K    +G      D T YRSVVGALQYL LTRPDI+  VNKVCQ
Sbjct: 996  NMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKVCQ 1055

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRYLK     GL L+  +   + AYSDADWAG LDDRRST G+ 
Sbjct: 1056 FLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLDDRRSTGGFA 1115

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTE+EY+ +A AT+E+MW+Q+LL EL V S ++  LWCD
Sbjct: 1116 VFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMAKLWCD 1175

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANPVFHARTKHIE+DYHFVRERV+ K L + F+ + DQ+AD FTK L+  + 
Sbjct: 1176 NLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKALSVRQL 1235

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1236 ENFKYNLNLGKL 1247


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  565 bits (1455), Expect = e-158
 Identities = 277/489 (56%), Positives = 359/489 (73%), Gaps = 3/489 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D++ +AL++N T+ LV  + G N++G KWV+++K+  DGT++R+KARLVAKGF Q+ G+D
Sbjct: 962  DSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGID 1021

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LS+A    W L+QLDV+NAFLHG LEE+VYM QP G+ DP  P
Sbjct: 1022 YEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKP 1081

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            +HVCKL K+LYGLKQAPRAWFSRLS  L+ +GFKGS  D+SLF         +VLVYVDD
Sbjct: 1082 HHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVDD 1141

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     + L+  L  EFALKD+G+L +FLG+EV +  NG+VL Q KY +DLLK+V
Sbjct: 1142 IIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKV 1201

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KP  TPLS + K    +G     +D + YRSVVGALQYL LTRPDI+ +VNKVCQ
Sbjct: 1202 GMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQ 1261

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRYLK     GL ++    + +  +SDADWAGCLDDRRST G+ 
Sbjct: 1262 FLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFA 1321

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            I+ G NL+SW+ARKQ TVS+SSTE+EY+ +A AT+E+MW+Q+LL EL + S     +WCD
Sbjct: 1322 IFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCD 1381

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANPVFHARTKHIE+DYHFVRERV+ K L + F+S+ DQ+AD FTK L+    
Sbjct: 1382 NLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRLL 1441

Query: 1434 QFLRSKLHI 1460
            +  +S L++
Sbjct: 1442 ENFKSNLNL 1450


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  563 bits (1452), Expect = e-157
 Identities = 277/489 (56%), Positives = 359/489 (73%), Gaps = 3/489 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D +  ALI+N T+ LV  + G NV+  KWV+++K+  DG+++R+KARLVAKGF Q+ G+D
Sbjct: 940  DAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 999

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W L+QLDV+NAFLHG LEE+VYMKQP GY +P+ P
Sbjct: 1000 YEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTP 1059

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            ++VCKL K+LYGLKQAPRAW+SRLS  L  +GFKGS AD+SLF     +   ++L+YVDD
Sbjct: 1060 DYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDD 1119

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S    +S L+  L  EFALKD+GDL +FLG+EV +   G++++Q KY SDLLKRV
Sbjct: 1120 IIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRV 1179

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   K V TPLS++ K    +G      D T YRS+VGALQYL LTR DI+ +VNKVCQ
Sbjct: 1180 NMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQ 1239

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H+P  EHW  VKRILRY+K     GL +       +  YSDADWAGCLDDRRST G+ 
Sbjct: 1240 FLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLDDRRSTGGFA 1299

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            +Y G NL+SW+A+KQ TVS+SSTEAEY+ +A AT+E+MW+Q+LL EL + S A+  LWCD
Sbjct: 1300 VYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCD 1359

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            N+GA YL+ NPVFHARTKHIE+DYHFVRERVA K L V ++S+ DQ+AD FTK L   + 
Sbjct: 1360 NMGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVKQL 1419

Query: 1434 QFLRSKLHI 1460
            +  +  L++
Sbjct: 1420 ENFKYNLNL 1428


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  563 bits (1450), Expect = e-157
 Identities = 273/498 (54%), Positives = 358/498 (71%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            +++  AL+RN T+SLV      ++VG +W++++K  PDG+I+RHKARLVA+GF Q  G+D
Sbjct: 876  NSEYQALLRNNTWSLVPPPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGID 935

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+KPCTIRL+L++A    W ++QLDVENAFL+G LEE+V+M QP G+V+P YP
Sbjct: 936  YFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVENAFLNGDLEEEVFMTQPQGFVNPTYP 995

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
             +VCKLHK+LYGLKQAPRAWF +L   L+  GF+ S AD+SLF+  T T I  +LVYVDD
Sbjct: 996  TYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDD 1055

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            I+VTGS+   +S  I+ L ++FAL+D+G LS+FLG++  +  + L L Q KYI+DLL R 
Sbjct: 1056 ILVTGSNPMLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRT 1115

Query: 723  KMDGVKPVCTPLSSNVKTQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQYM 902
            +M+  KP  TP        Q       D + YR  VGALQY+ LTRPDI+ AVNK CQ+M
Sbjct: 1116 QMETSKPAPTPGRLGRTLSQSDGMSLSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFM 1175

Query: 903  HDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYCIY 1082
              P + HW  VKRILRYLK T++ GLH        L  YSDADWA C DDRRSTSGYC++
Sbjct: 1176 AKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMELQGYSDADWASCPDDRRSTSGYCVF 1235

Query: 1083 YGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTSAIPILWCDNLG 1262
             G NLISWS+ KQ+ VSKSS E+EYRG+   T+EL+WIQSLL EL + ++ PILWCDN  
Sbjct: 1236 LGSNLISWSSSKQRLVSKSSAESEYRGLVSLTAELVWIQSLLQELCLPTSPPILWCDNQS 1295

Query: 1263 ATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRYQFL 1442
            A +L ANPVFH+R+KHIE+D HF+RE+V  ++L + ++ S DQLADIFTK L   ++  L
Sbjct: 1296 AAHLAANPVFHSRSKHIELDLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNL 1355

Query: 1443 RSKLHIRQLQYNLRGDVN 1496
            RSKL +     +LRGD N
Sbjct: 1356 RSKLTVTYPPLSLRGDDN 1373


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  560 bits (1444), Expect = e-157
 Identities = 274/492 (55%), Positives = 363/492 (73%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D + +AL++N T+ LV  + G NV+G KWV+++K+  DG+++R+KARLVAKG+ QQ G+D
Sbjct: 822  DIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGID 881

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W L QLDV+NAFLHG LEE+VYM+QP GY D    
Sbjct: 882  YDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYEDSTKL 941

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            N+VCKL K+LYGLKQAPRAW+SRLS  L+ +GF+ S AD+SLF     +   +VLVYVDD
Sbjct: 942  NYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVDD 1001

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S       L++ L  EFALKD+GDL++FLG+EV +  +G++LTQ KY SDLLK+V
Sbjct: 1002 IIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKV 1061

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KP+ TPLS++ K    +G     KD T YRS+VGALQYL LTRPDI+ +VNKVCQ
Sbjct: 1062 GMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQ 1121

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRY+K   N GLH++    + + A+SDADWAG +DDR+ST G+ 
Sbjct: 1122 FLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFA 1181

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTE+EY+ +A AT+EL+W+Q LLTE+ + S     LWCD
Sbjct: 1182 VFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCD 1241

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANP+FHARTKHIE+DYHFVR+RVA K L + ++ + DQ+AD FTK L+    
Sbjct: 1242 NLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLSVRLL 1301

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1302 ENFKVNLNLTRL 1313


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  560 bits (1442), Expect = e-156
 Identities = 271/498 (54%), Positives = 356/498 (71%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            +++  AL+RN T+SLV      ++VG +W++++K  PDG+I+RHKARLVA+GF Q  G+D
Sbjct: 223  NSEYQALLRNNTWSLVPPPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGID 282

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+KPCTIRL+L++A    W ++QLDVEN FL+G LEE+V+M QP G+V+P YP
Sbjct: 283  YFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVENGFLNGDLEEEVFMTQPQGFVNPTYP 342

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
             +VCKLHK+LYGLKQAPRAWF +L   L+  GF+ S AD+SLF+  T T I  +LVYVDD
Sbjct: 343  TYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDD 402

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            I+VTGS+   +S  I+ L ++FAL+D+G LS+FLG++  +  + L L Q KYI+DLL R 
Sbjct: 403  ILVTGSNPTLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRT 462

Query: 723  KMDGVKPVCTPLSSNVKTQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQYM 902
            +M+  KP  TP        Q       D + YR  VGALQY+ LTRPDI+ AVNK CQ+M
Sbjct: 463  QMETSKPAPTPGRLGRTLSQSDGVSLSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFM 522

Query: 903  HDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYCIY 1082
              P + HW  VKRILRYLK T++ GLH           YSDADWA C DDRRSTSGYC++
Sbjct: 523  AKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMEXQGYSDADWASCPDDRRSTSGYCVF 582

Query: 1083 YGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTSAIPILWCDNLG 1262
             G NLISWS+ KQ+ VSKSS E+EYRG+   T+EL+WIQSLL EL + ++ PILWCDN  
Sbjct: 583  LGSNLISWSSSKQRLVSKSSAESEYRGLVSLTAELVWIQSLLQELCLPTSPPILWCDNQS 642

Query: 1263 ATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRYQFL 1442
            A +L ANPVFH+R+KHIE+D HF+RE+V  ++L + ++ S DQLADIFTK L   ++  L
Sbjct: 643  AAHLAANPVFHSRSKHIELDLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNL 702

Query: 1443 RSKLHIRQLQYNLRGDVN 1496
            RSKL +     +LRGD N
Sbjct: 703  RSKLTVTYPPLSLRGDDN 720


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  558 bits (1438), Expect = e-156
 Identities = 281/492 (57%), Positives = 357/492 (72%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D +  AL+ N T+ LV  + G NV+  KWV+++K+  DG+++R+KARLVAKGF Q+ G+D
Sbjct: 956  DIEYEALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 1015

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR+VLSIA    W ++QLDV+NAFLHG LEE+VYMKQP GY D ++P
Sbjct: 1016 YEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFP 1075

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
             +VCKL K+LYGLKQAPRAW+SRLS  L  +GF+GS  D+SLF       I +VL+YVDD
Sbjct: 1076 GYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDD 1135

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIVT S    +S L+  L  EFALKD+GDL +FLG+EV +  + ++LTQ KY  DLL+RV
Sbjct: 1136 IIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRV 1195

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS++ K    +G      D T YRSVVGALQYL LTRPDI+  VNKVCQ
Sbjct: 1196 NMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQ 1255

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRYLK     GL L   K   + AYSDADWAG LDDRRST G+ 
Sbjct: 1256 FLHAPTTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFA 1315

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SW ARKQ TVS+SSTE+EY+ +A AT+E+MW+Q+LLTEL V S  +  LWCD
Sbjct: 1316 VFLGDNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCD 1375

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL++NPVFHARTKHIE+DYHFVRERV+ K L + F+ + DQ+AD FTK L   + 
Sbjct: 1376 NLGAKYLSSNPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQL 1435

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1436 ENFKHNLNLGRL 1447


>gb|KHN17953.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine
            soja]
          Length = 1294

 Score =  557 bits (1435), Expect = e-155
 Identities = 270/498 (54%), Positives = 366/498 (73%), Gaps = 1/498 (0%)
 Frame = +3

Query: 9    QINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVDYG 188
            + +AL  N T+ LV      N+VG KWVFR+K+NPDG+I+R+KARLVAKGF+Q+ G DY 
Sbjct: 795  EFDALHHNNTWDLVSRSSDQNLVGCKWVFRIKRNPDGSIDRYKARLVAKGFHQRSGWDYT 854

Query: 189  ETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYPNH 368
            ETFSPV+KP TIR+VL++A    WP++QLDV NAFL G L+E+V+M QP G+V+ N+P+H
Sbjct: 855  ETFSPVVKPVTIRIVLTLAVRQGWPIRQLDVNNAFLQGTLKEEVFMIQPPGFVNKNFPDH 914

Query: 369  VCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDDII 548
            VC+L K+LYGLKQAPRAW++ L  +L  +GF  S AD+SLF+ Q P    Y+LVYVDDII
Sbjct: 915  VCRLKKALYGLKQAPRAWYTELRIFLFSLGFVNSTADASLFIYQKPEVTLYLLVYVDDII 974

Query: 549  VTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRVKM 728
            +TG+ SA++S+LIA L + F+LKD+G LS+FLGVEV+    G+ L+QRKYI DLL +  M
Sbjct: 975  MTGNSSAELSKLIATLAARFSLKDLGCLSYFLGVEVIPSAAGMFLSQRKYIIDLLHKSGM 1034

Query: 729  DGVKPVCTPLSSNVKTQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQYMHD 908
               KP  TPLS++V+  +   +       YR++VG+LQYL LTRPDI+ + NK+ Q+M +
Sbjct: 1035 TNTKPASTPLSASVQLLKDSGDLLPSPNEYRTLVGSLQYLSLTRPDIAFSTNKLAQFMQN 1094

Query: 909  PFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYCIYYG 1088
            P   HW  +KR+LRYL  + + G+ +++    + HAYSDADWAG  DD  ST+GY +Y G
Sbjct: 1095 PRTAHWSALKRVLRYLAGSCDKGVFISATAPLTFHAYSDADWAGDKDDYVSTTGYLLYLG 1154

Query: 1089 GNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELG-VTSAIPILWCDNLGA 1265
               ISWS+RKQ++V++SSTEAEY+ +A   SEL+W+ SL TELG + +A P+++CDNLGA
Sbjct: 1155 NTPISWSSRKQRSVARSSTEAEYKALADTASELLWVLSLFTELGHMPTANPVIYCDNLGA 1214

Query: 1266 TYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRYQFLR 1445
            T L+ANPVFH+R KHI + YHFVRE V + +  V F+S+ DQLADI TK L  PR++ L 
Sbjct: 1215 TNLSANPVFHSRMKHIALAYHFVREHVQHGKFRVSFVSTDDQLADILTKPLLRPRFESLL 1274

Query: 1446 SKLHIRQLQYNLRGDVND 1499
            SKLH+    YNLR D+N+
Sbjct: 1275 SKLHLSSRLYNLREDINN 1292


>ref|XP_008365969.1| PREDICTED: uncharacterized protein LOC103429605 [Malus domestica]
          Length = 1188

 Score =  557 bits (1435), Expect = e-155
 Identities = 274/501 (54%), Positives = 359/501 (71%)
 Frame = +3

Query: 9    QINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVDYG 188
            + NAL R GT+SLV Y   MNV+ +KWVF++K+  DGTIERHKARLVA GF+Q+ GVDY 
Sbjct: 683  EFNALQRCGTWSLVPYSSQMNVLPNKWVFKIKRRADGTIERHKARLVANGFHQKAGVDYT 742

Query: 189  ETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYPNH 368
            ETFSPV+K  TIRLVLS+A    W ++QLDV+NAFLHG L E VYM QP+G++D  +P+H
Sbjct: 743  ETFSPVVKHSTIRLVLSLAVSKKWXVRQLDVQNAFLHGYLHEHVYMXQPSGFIDKQFPHH 802

Query: 369  VCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDDII 548
            VCKL +SLYGLKQAPRAWF R S +L ++GF  S    SLFV         +L+YVDDI+
Sbjct: 803  VCKLQRSLYGLKQAPRAWFQRFSDFLFQLGFDESTCXYSLFVFNKRGVYIILLIYVDDIL 862

Query: 549  VTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRVKM 728
            +TG+   +++ LI  LGS F++KD+G LS+FLG+EV    + + L Q KY  DL+ R K 
Sbjct: 863  ITGNSPRQMAHLIKKLGSLFSMKDLGPLSYFLGIEVKYNGDAMHLCQSKYALDLJTRTKF 922

Query: 729  DGVKPVCTPLSSNVKTQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQYMHD 908
               KP+ TP+SS  K      + + +  +YRSVVGALQYL +TRPD+S AVN++CQ+MH 
Sbjct: 923  TXAKPISTPVSSGQKLSAYVGDPYANXEMYRSVVGALQYLTITRPDLSYAVNQICQFMHS 982

Query: 909  PFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYCIYYG 1088
            P N HW  VKRILRYLK+T N GL L     ++L AYSDAD+AG  D R ST G+C+Y G
Sbjct: 983  PKNTHWMAVKRILRYLKATYNHGL-LYKPGTATLTAYSDADYAGNPDTRHSTGGFCVYLG 1041

Query: 1089 GNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTSAIPILWCDNLGAT 1268
             +L+SWS++KQKTVS+SS EAEYR +A   +EL W++SL  +L +    P +WCDN+ + 
Sbjct: 1042 SSLVSWSSKKQKTVSRSSAEAEYRQLAYTAAELSWLRSLYKDLHLHLVPPTIWCDNISSI 1101

Query: 1269 YLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRYQFLRS 1448
             L +NPVFH+RTKH+E+DYH+VRE+V  KQL V ++ S+DQLADIFTKGL++ R++FL S
Sbjct: 1102 ALASNPVFHSRTKHLEVDYHYVREKVVRKQLFVSYVCSQDQLADIFTKGLSSSRFKFLVS 1161

Query: 1449 KLHIRQLQYNLRGDVNDKTPA 1511
            KL +     +LRG V    PA
Sbjct: 1162 KLPVVPPPVSLRGAVRRSQPA 1182


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  555 bits (1431), Expect = e-155
 Identities = 272/492 (55%), Positives = 357/492 (72%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            +T+ NALI+N T+ LV YE G N++G KWV++VK+  DGT++R+K RL+AKGF Q+ G+D
Sbjct: 957  ETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGID 1016

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W L+QLDV+N FL G LEE+VYM+QP G+   +  
Sbjct: 1017 YEDTFSPVVKAATIRIILSIAVSRGWNLRQLDVQNDFLRGFLEEEVYMQQPPGFESSSKR 1076

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            ++VCKL+K+LYGLKQAPRAW+SRLS  L ++GF+ S AD+SLF       I +VLVYVDD
Sbjct: 1077 DYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1136

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     + L+  L  EF LKD+GDL +FLG+EV +  NG++LTQ KY +D+LKRV
Sbjct: 1137 IIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRV 1196

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M    PV TPLS + K    +G      D T YRS+VGALQYL LTRPDI+ +VNKVCQ
Sbjct: 1197 NMSNCTPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1256

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRYL    + GLH++    + +H YSDAD AG +DDR+ST G+ 
Sbjct: 1257 FLHAPTTSHWIAVKRILRYLNQCTSPGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFA 1316

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTEAEY+ VA  T+EL+W+Q++L ELG+ S     +WCD
Sbjct: 1317 VFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCD 1376

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANPVFHA+TKHI +DYHFVRERV+ K L + F+ S DQ+AD FTK L+A   
Sbjct: 1377 NLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSARLL 1436

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1437 ENFKHNLNLTRL 1448


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  555 bits (1429), Expect = e-155
 Identities = 276/489 (56%), Positives = 358/489 (73%), Gaps = 3/489 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D++  AL++N T+ LV  + G N++  KWV++VK+  DG+++R+KAR+VAKGF Q+ G+D
Sbjct: 941  DSEYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVVAKGFKQRYGID 1000

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TF+PV+K  TIR +LSIA    W L+QLDV+NAFLHG LEEDV+M+QP GY   +  
Sbjct: 1001 YEDTFNPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKD-- 1058

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
             +VCKL K+LYGLKQAPRAW+SRLST L ++GFK S +D+SLF         ++LVYVDD
Sbjct: 1059 GYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDD 1118

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     + L+  L  EFALKD+G L +FLG+EV   +NG+VLTQ KY  D+LKRV
Sbjct: 1119 IIVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRV 1178

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   K V TPLS + K    +G     +D T YRS+VGALQYL LTRPD+S +VNKVCQ
Sbjct: 1179 NMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQ 1238

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            Y+H P  +HW   KRILRYLK TV  GL ++      + A+SDADWAGCLDDR ST G+ 
Sbjct: 1239 YLHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFA 1298

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTEAEY+ +A  T+E+MWIQ+LL ELG+ +  I  +WCD
Sbjct: 1299 VFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCD 1358

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            N+GA Y+TANPVFHARTKHIE+DYHFVRERVA K L V +IS++DQ+AD FTK L+  + 
Sbjct: 1359 NIGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQL 1418

Query: 1434 QFLRSKLHI 1460
            +  R+ L++
Sbjct: 1419 EMFRNNLNL 1427


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  554 bits (1427), Expect = e-155
 Identities = 270/497 (54%), Positives = 364/497 (73%), Gaps = 2/497 (0%)
 Frame = +3

Query: 9    QINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVDYG 188
            + +AL RN T+SLV    G   +G KWV++ K+NPDGT++++KARLVAKGF+QQ G D+ 
Sbjct: 956  EYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFT 1015

Query: 189  ETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYPNH 368
            ETFSPV+KP T+R+V +IA   +W +KQLDV NAFL+G L+E+V+M+QP G++D   PN 
Sbjct: 1016 ETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGFIDEQNPNL 1075

Query: 369  VCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDDII 548
            VC+LHK+LYGLKQAPRAWF +L   L+  GF  + +D SLF+  TP  ITYVLVYVDDI+
Sbjct: 1076 VCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDIL 1135

Query: 549  VTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRVKM 728
            V GSD+A I+ LIA L SEF+LKD+G++ +FLG++V   +NGL L+Q KYI DLL++ KM
Sbjct: 1136 VIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKM 1195

Query: 729  DGVKPVCTPLSSNVKTQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQYMHD 908
               KP  TPL + +K + G  +  +D   YRS VGALQY+ +TRP++S +VNKVCQ+M +
Sbjct: 1196 VHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQN 1255

Query: 909  PFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYCIYYG 1088
            P  EHW++VKRILRYL+ T+  GLHL    +  L  + DADWA  LDDRRSTSG+C++ G
Sbjct: 1256 PTEEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLG 1315

Query: 1089 GNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTSA-IPILWCDNLGA 1265
             NLISW ++KQ  VS+SS E EYR +A   +E+ W++SLL+EL +  A  P++WCDNL  
Sbjct: 1316 PNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLST 1375

Query: 1266 TYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRYQFLR 1445
              L+ANPV HARTKHIE+D +FVRE+V  K++ VR + S DQLAD+ TK +++ ++   R
Sbjct: 1376 VLLSANPVLHARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFR 1435

Query: 1446 SKLHIRQLQ-YNLRGDV 1493
             KL I  L   +LRGDV
Sbjct: 1436 HKLRIENLSTLSLRGDV 1452


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  554 bits (1427), Expect = e-155
 Identities = 278/493 (56%), Positives = 361/493 (73%), Gaps = 3/493 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D +  ALI N T+ LV  + G NV+  KWV++VK+  DG+++R+KARLVAKGF Q+ G+D
Sbjct: 902  DAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGID 961

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR+VLS+A    W L+QLDV+NAFLHG LEE+VYMKQP GY   + P
Sbjct: 962  YEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMP 1021

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            N+VCKL K+LYGLKQAPRAW+SRLST L ++GF  S AD+SLF  +      ++L+YVDD
Sbjct: 1022 NYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDD 1081

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     S L+  L  +FALKD+GDL +FLG+EV +  +GL+L+Q KY SDLL+RV
Sbjct: 1082 IIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRV 1141

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS++ K    +G     +D T YRSVVGALQYL LTRPDIS ++NKVCQ
Sbjct: 1142 GMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQ 1201

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRY+K TV+ GL         +  +SDADWAG  DDRRST G+ 
Sbjct: 1202 FLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFA 1261

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SS EAEY+ +A AT+E+MW+Q+LL ELGV S     LWCD
Sbjct: 1262 VFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCD 1321

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANP+FHARTKHIE+D+HFVRERVA K L + +IS++DQ+AD FTK +   + 
Sbjct: 1322 NLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQM 1381

Query: 1434 QFLRSKLHIRQLQ 1472
            +  ++ L++ +++
Sbjct: 1382 EMFKNNLNLERVK 1394


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  553 bits (1426), Expect = e-154
 Identities = 277/493 (56%), Positives = 362/493 (73%), Gaps = 3/493 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D +  ALI N T+ LV  + G NV+  KWV++VK+  DG+++R+KARLVAKGF Q+ G+D
Sbjct: 324  DAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGID 383

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR+VLS+A    W L+QLDV+NAFLHG LEE+VYM+QP GY   + P
Sbjct: 384  YEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMP 443

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            N+VCKL K+LYGLKQAPRAW+SRLST L ++GF  S AD+SLF  +      ++L+YVDD
Sbjct: 444  NYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDD 503

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            II+  S     S L+  L  +FALKD+GDL +FLG+EV +  +GL+L+Q KY SDLL+RV
Sbjct: 504  IIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRV 563

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS++ K    +G     +D T YRSVVGALQYL LTRPDIS ++NKVCQ
Sbjct: 564  GMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQ 623

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  VKRILRY+K TV+ GL         +  +SDADWAG  DDRRST G+ 
Sbjct: 624  FLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFA 683

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTEAEY+ +A AT+E+MW+Q+LL ELGV S     LWCD
Sbjct: 684  VFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCD 743

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL+ANP+FHARTKHIE+D+HFVRERVA K L + +IS++DQ+AD FTK +   + 
Sbjct: 744  NLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQM 803

Query: 1434 QFLRSKLHIRQLQ 1472
            +  ++ L++ +++
Sbjct: 804  EMFKNNLNLERVR 816


>ref|YP_514636.1| hypothetical protein OrsaiPp07 (mitochondrion) [Oryza sativa Indica
            Group] gi|289065044|ref|YP_003433855.1| hypothetical
            protein OrrupM_p18 (mitochondrion) [Oryza rufipogon]
            gi|74100111|gb|AAZ99275.1| hypothetical protein
            (mitochondrion) [Oryza sativa Indica Group]
            gi|74100166|gb|AAZ99329.1| hypothetical protein
            (mitochondrion) [Oryza sativa Japonica Group]
            gi|74100220|gb|AAZ99382.1| hypothetical protein
            (mitochondrion) [Oryza sativa Japonica Group]
            gi|285026126|dbj|BAI67959.1| hypothetical protein
            (mitochondrion) [Oryza rufipogon]
            gi|285026155|dbj|BAI67987.1| hypothetical protein
            (mitochondrion) [Oryza sativa Indica Group]
            gi|353685219|gb|AER12982.1| hypothetical protein
            (mitochondrion) [Oryza sativa Indica Group]
            gi|353685288|gb|AER13050.1| hypothetical protein
            (mitochondrion) [Oryza sativa Indica Group]
            gi|374277649|gb|AEZ03755.1| hypothetical protein
            (mitochondrion) [Oryza sativa Indica Group]
            gi|374277659|gb|AEZ03764.1| hypothetical protein
            (mitochondrion) [Oryza sativa Indica Group]
            gi|528540457|dbj|BAN67511.1| hypothetical protein
            (mitochondrion) [Oryza rufipogon]
            gi|528540460|dbj|BAN67513.1| hypothetical protein
            (mitochondrion) [Oryza rufipogon]
          Length = 490

 Score =  553 bits (1424), Expect = e-154
 Identities = 279/488 (57%), Positives = 356/488 (72%), Gaps = 3/488 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D +  AL+RN T+ LV    G N++  KWV+++K+  DGTI+R+KARLVAKGF Q+ G+D
Sbjct: 2    DEEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGID 61

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y ETFSPV+K  TIRL+LS+A  N W L+QLDV+NAFLHG LEEDVYM+QP GY D +  
Sbjct: 62   YEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSKL 121

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            ++VCKL K+LYGLKQAPRAWFSRLS  L  +GF+ S AD+SLF  +  T   +VL+YVDD
Sbjct: 122  DYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKGTISIFVLIYVDD 181

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     S L+  L  EFALKD+G L +FLG+EV + H+G++LTQ KY +DLLKRV
Sbjct: 182  IIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKRV 241

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M G K + TPLS+  K   ++G     +D T YRS+VGALQYL LTRPDI+  VNKVCQ
Sbjct: 242  GMHGCKEINTPLSTTDKLLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVCQ 301

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            Y+H P + HW  VKRILRYLK ++  GL +     + + A+SDADWAGC DDR+ST G+ 
Sbjct: 302  YLHAPTSLHWTAVKRILRYLKGSLGLGLRICKSDSTLVSAFSDADWAGCPDDRKSTGGFA 361

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NLISW+A KQ TVS+SSTEAEY+ +A AT+E++ +Q+LL E G+       LWCD
Sbjct: 362  VFLGANLISWNAWKQATVSRSSTEAEYKALANATAEIISVQTLLKERGIAQPRAACLWCD 421

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            N+GAT L+ANPVFHARTKHIE+DYHFVRERV+   L +RF+ S DQ+AD FT     PR 
Sbjct: 422  NIGATSLSANPVFHARTKHIEVDYHFVRERVSQGLLDIRFVPSGDQVADGFT--CNRPRR 479

Query: 1434 QFLRSKLH 1457
            Q+++  LH
Sbjct: 480  QYIQGGLH 487


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  551 bits (1421), Expect = e-154
 Identities = 276/489 (56%), Positives = 356/489 (72%), Gaps = 3/489 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D++  AL++N T+  V  + G N++  KWV++VK+  DG+++R+KARLVAKGF Q+ G+D
Sbjct: 541  DSEYQALMKNKTWHRVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGID 600

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TF PV+K  TIR +LSIA    W L+QLDV+NAFLHG LEEDV+M+QP GY   +  
Sbjct: 601  YEDTFRPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKD-- 658

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
             +VCKL K+LYGLKQAPRAW+SRLST L ++GFK S +D+SLF         ++LVYVDD
Sbjct: 659  GYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVTIFMLVYVDD 718

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S     + L+  L  EFALKD+G L +FLG+EV   ++G+VLTQ KY  D+LKRV
Sbjct: 719  IIVASSSIVATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRV 778

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   K V TPLS + K    +G     +D T YRS+VGALQYL LTRPD+S +VNKVCQ
Sbjct: 779  NMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQ 838

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            Y+H    +HW   KRILRYLK TV  GL ++      + A+SDADWAGCLDDRRST G+ 
Sbjct: 839  YLHAATTKHWVAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFA 898

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGV-TSAIPILWCD 1253
            ++ G NL+SWSARKQ TVS+SSTEAEY+ +A AT+E+MWIQ+LL ELG+    I  +WCD
Sbjct: 899  VFIGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCD 958

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            N+GA Y+TANPVFHARTKHIE+DYHFVRERVA K L V +IS++DQ+AD FTK L+  + 
Sbjct: 959  NIGAKYMTANPVFHARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTKTLSVRQL 1018

Query: 1434 QFLRSKLHI 1460
            +  R+ L++
Sbjct: 1019 EMFRNNLNL 1027


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  551 bits (1419), Expect = e-154
 Identities = 274/492 (55%), Positives = 358/492 (72%), Gaps = 3/492 (0%)
 Frame = +3

Query: 3    DTQINALIRNGTYSLVKYEPGMNVVGSKWVFRVKQNPDGTIERHKARLVAKGFNQQEGVD 182
            D +  AL+ N T+ LV  + G N++  KWV+++K+  DG+++R+KARLVAKGF Q+ G+D
Sbjct: 765  DAKFTALLHNKTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 824

Query: 183  YGETFSPVIKPCTIRLVLSIAAMNHWPLKQLDVENAFLHGQLEEDVYMKQPAGYVDPNYP 362
            Y +TFSPV+K  TIR++LSIA    W L+QLDV+NAFLHG LEE+VYMKQP GY D  +P
Sbjct: 825  YEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHP 884

Query: 363  NHVCKLHKSLYGLKQAPRAWFSRLSTYLVKIGFKGSVADSSLFVCQTPTSITYVLVYVDD 542
            ++VCKL K+LYGLKQAPRAW+++LS  L  +GF+GS AD+SLF       I +VLVYVDD
Sbjct: 885  DYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVDD 944

Query: 543  IIVTGSDSAKISQLIAALGSEFALKDMGDLSFFLGVEVLRQHNGLVLTQRKYISDLLKRV 722
            IIV  S    +  L+  L  +FALKD+GDL +FLG+EV +  +G+VLTQ KY++DLL+RV
Sbjct: 945  IIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRV 1004

Query: 723  KMDGVKPVCTPLSSNVK--TQQGGTERFKDGTLYRSVVGALQYLHLTRPDISVAVNKVCQ 896
             M   KPV TPLS++ K    +G      D + YRSVVGALQYL LTRPDI   VNKVCQ
Sbjct: 1005 GMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVCQ 1064

Query: 897  YMHDPFNEHWELVKRILRYLKSTVNFGLHLNSKKDSSLHAYSDADWAGCLDDRRSTSGYC 1076
            ++H P   HW  +KRILRYLK     GL ++  K   +  YSDADWAG +DDRRST G+ 
Sbjct: 1065 FLHAPTIVHWAAMKRILRYLKQCTKLGLKISKSKSMLVSGYSDADWAGNIDDRRSTGGFA 1124

Query: 1077 IYYGGNLISWSARKQKTVSKSSTEAEYRGVAIATSELMWIQSLLTELGVTS-AIPILWCD 1253
            ++ G NL+SW+A+KQ TV +SSTE+EY+ +A AT+E+MWIQ+LL EL V S  +  LWCD
Sbjct: 1125 VFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCD 1184

Query: 1254 NLGATYLTANPVFHARTKHIEIDYHFVRERVANKQLSVRFISSRDQLADIFTKGLAAPRY 1433
            NLGA YL++NPVFHARTKHIE+DYHFVRER+  K L V FI + DQ+AD FTK L+A + 
Sbjct: 1185 NLGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALSARQL 1244

Query: 1434 QFLRSKLHIRQL 1469
            +  +  L++ +L
Sbjct: 1245 ENFKYNLNVGRL 1256