BLASTX nr result
ID: Papaver31_contig00038212
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver31_contig00038212
(908 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III s... 284 6e-74
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 275 5e-71
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 275 5e-71
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao... 271 7e-70
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 270 1e-69
ref|XP_011005565.1| PREDICTED: DNA-directed RNA polymerase III s... 270 1e-69
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 267 9e-69
ref|XP_010907843.1| PREDICTED: DNA-directed RNA polymerase III s... 266 2e-68
emb|CDP06311.1| unnamed protein product [Coffea canephora] 265 3e-68
gb|KHG07033.1| DNA-directed RNA polymerase III subunit RPC1 [Gos... 265 5e-68
ref|XP_008813807.1| PREDICTED: DNA-directed RNA polymerase III s... 264 6e-68
ref|XP_010535561.1| PREDICTED: DNA-directed RNA polymerase III s... 260 9e-67
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 260 9e-67
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab... 260 9e-67
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana... 260 9e-67
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 260 1e-66
ref|XP_010443797.1| PREDICTED: DNA-directed RNA polymerase III s... 259 2e-66
ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III s... 259 2e-66
ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III s... 259 2e-66
ref|XP_012064930.1| PREDICTED: DNA-directed RNA polymerase III s... 256 2e-65
>ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nelumbo
nucifera]
Length = 1392
Score = 284 bits (727), Expect = 6e-74
Identities = 144/249 (57%), Positives = 181/249 (72%), Gaps = 16/249 (6%)
Frame = -1
Query: 701 SEAQAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNA 522
+ Q + FTK+PY+EDVGPRKI+SI+FSM SG EI KAAEVQV S +YD NRKP +
Sbjct: 2 ANTQDRMLFTKEPYIEDVGPRKIKSIRFSMFSGDEIRKAAEVQVWRSVYYDVNRKPIDDG 61
Query: 521 LLDSRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCAR 342
LLDSRMGPA+K+ IC TC G DCPGH+GYL+L LPVFNVGYF+ IL+ILKCICKSCAR
Sbjct: 62 LLDSRMGPASKSGICTTCDGSFTDCPGHFGYLNLALPVFNVGYFSTILDILKCICKSCAR 121
Query: 341 ILLSEKERVSYLKRMRNPKAEALQKTATAKAILKSC-------KPKTCSRCGYVNAVVKK 183
ILL E++R YLK+MR+ KA+ALQK K I+K C K C+RCGY+N VKK
Sbjct: 122 ILLEEEKRKDYLKKMRSSKADALQKNNLMKQIVKKCTTMLSSKKALKCTRCGYINGFVKK 181
Query: 182 ------AGTVMGIIHDRSKKFTDDTDKECKAALSGTKDSGTR---IQILNPVRVLGLFKR 30
G+ +GI+HDRS K D++ +EC +A+S K+S + +LNPVR+L LFKR
Sbjct: 182 GASISGTGSTLGIVHDRS-KVNDESLEECSSAISHKKESKASFRVVHVLNPVRILALFKR 240
Query: 29 ILDQDCELL 3
++D+DCELL
Sbjct: 241 MVDEDCELL 249
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 275 bits (702), Expect = 5e-71
Identities = 138/236 (58%), Positives = 172/236 (72%), Gaps = 10/236 (4%)
Frame = -1
Query: 680 QFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMG 501
QFTK+PY+EDVGPRKI+SI+F++ S EI KAAEVQV +YD NRKP +N LLD RMG
Sbjct: 6 QFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMG 65
Query: 500 PANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKE 321
PANKN C TC G DCPGH GYL L LPV+NVGY + I++ILKCICKSC+R+LL EK
Sbjct: 66 PANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKA 125
Query: 320 RVSYLKRMRNPKAEALQKTATAKAILKSC-------KPKTCSRCGYVNAVVKKAGTVMGI 162
YLK+MR+ K EAL+K K I++ C K CSRCGY+N +VKKA +V+GI
Sbjct: 126 SKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGI 185
Query: 161 IHDRSKKFTDDTDKECKAALSGTKDSGTR---IQILNPVRVLGLFKRILDQDCELL 3
IHDRS K D + +EC +A+S TK+S + ILNPV+VL LFKR++D+DC+LL
Sbjct: 186 IHDRS-KIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Vitis
vinifera]
Length = 1383
Score = 275 bits (702), Expect = 5e-71
Identities = 138/236 (58%), Positives = 172/236 (72%), Gaps = 10/236 (4%)
Frame = -1
Query: 680 QFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMG 501
QFTK+PY+EDVGPRKI+SI+F++ S EI KAAEVQV +YD NRKP +N LLD RMG
Sbjct: 6 QFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMG 65
Query: 500 PANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKE 321
PANKN C TC G DCPGH GYL L LPV+NVGY + I++ILKCICKSC+R+LL EK
Sbjct: 66 PANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKA 125
Query: 320 RVSYLKRMRNPKAEALQKTATAKAILKSC-------KPKTCSRCGYVNAVVKKAGTVMGI 162
YLK+MR+ K EAL+K K I++ C K CSRCGY+N +VKKA +V+GI
Sbjct: 126 SKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGI 185
Query: 161 IHDRSKKFTDDTDKECKAALSGTKDSGTR---IQILNPVRVLGLFKRILDQDCELL 3
IHDRS K D + +EC +A+S TK+S + ILNPV+VL LFKR++D+DC+LL
Sbjct: 186 IHDRS-KIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240
>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
[Theobroma cacao]
Length = 1395
Score = 271 bits (692), Expect = 7e-70
Identities = 139/238 (58%), Positives = 172/238 (72%), Gaps = 10/238 (4%)
Frame = -1
Query: 686 QFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSR 507
Q +FTK+PY+EDVGPRKI+SI+FSM+S EI KAAEVQV + +YDP +P + LLD R
Sbjct: 2 QQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPR 61
Query: 506 MGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSE 327
MGPANK+ C TCHG DCPGHYGYL L LPV+NVGY + IL+ILKCICKSC+RI+L E
Sbjct: 62 MGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDE 121
Query: 326 KERVSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAGTVMG 165
K YLKRMR+PK +AL+K K+I+K C K C RCGYVN VKKA ++G
Sbjct: 122 KLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLG 181
Query: 164 IIHDRSKKFTDDTDKECKAALSGTKDS----GTRIQILNPVRVLGLFKRILDQDCELL 3
IIHDRS K D++ +E ++A+S TK+S +LNPV+VL LFKR+ D DCELL
Sbjct: 182 IIHDRS-KINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELL 238
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Citrus sinensis]
gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc1-like isoform X2 [Citrus
sinensis]
Length = 1404
Score = 270 bits (690), Expect = 1e-69
Identities = 139/234 (59%), Positives = 168/234 (71%), Gaps = 9/234 (3%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMGP 498
FTKQPY+EDVGPRKI+SI+FSMMS EIMKAAEVQV +Y NR P + LLD RMGP
Sbjct: 14 FTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDPRMGP 73
Query: 497 ANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKER 318
ANK+ C TCHG +CPGHYGYL L LPV+NVGY + IL+ILKCICK C+R+LL EK
Sbjct: 74 ANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLEEKLC 133
Query: 317 VSYLKRMRNPKAEALQKTATAKAILKSC-----KPKTCSRCGYVNAVVKKAGTVMGIIHD 153
YLK+MRNPK EAL+KT K+I+K C K C RCGY+N +VKKA V+GIIHD
Sbjct: 134 KDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD 193
Query: 152 RSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKRILDQDCELL 3
RSK ++ +E +A++ TK+S + ILNPV VL LFKR+ D DCE+L
Sbjct: 194 RSK--VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 245
>ref|XP_011005565.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Populus
euphratica]
Length = 1410
Score = 270 bits (689), Expect = 1e-69
Identities = 135/235 (57%), Positives = 173/235 (73%), Gaps = 10/235 (4%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMGP 498
+TKQPYVEDVGPR+I+SI+FS MSG +I+KA+E QV +YD N+K LLD+RMG
Sbjct: 10 YTKQPYVEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69
Query: 497 ANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKER 318
NK+ C+TC G DCPGH+GYL+L LPV+NVGY + IL+ILKCICKSC+R+L+ EK R
Sbjct: 70 PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLIDEKLR 129
Query: 317 VSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAGTVMGIIH 156
SYLKRMRNP+ E L+K K I+K C K C RCGY+N +VKKAG+V+GIIH
Sbjct: 130 KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189
Query: 155 DRSKKFTDDTDKECKAALSGTKDS----GTRIQILNPVRVLGLFKRILDQDCELL 3
DRS K +D +ECK+A+ T+++ G ILNPVRVL LF+RI+++DCELL
Sbjct: 190 DRS-KLSDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRIVEEDCELL 243
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 267 bits (682), Expect = 9e-69
Identities = 133/235 (56%), Positives = 172/235 (73%), Gaps = 10/235 (4%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMGP 498
+TKQPY+EDVGPR+I+SI+FS MSG +I+KA+E QV +YD N+K LLD+RMG
Sbjct: 10 YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69
Query: 497 ANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKER 318
NK+ C+TC G DCPGH+GYL+L LPV+NVGY + IL+ILKCICKSC+R+L+ EK R
Sbjct: 70 PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLR 129
Query: 317 VSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAGTVMGIIH 156
SYLKRMRNP+ E L+K K I+K C K C RCGY+N +VKKAG+V+GIIH
Sbjct: 130 KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189
Query: 155 DRSKKFTDDTDKECKAALSGTKDS----GTRIQILNPVRVLGLFKRILDQDCELL 3
DRS K D +ECK+A+ T+++ G ILNPVRVL LF+R++++DCELL
Sbjct: 190 DRS-KLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELL 243
>ref|XP_010907843.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Elaeis
guineensis]
Length = 1369
Score = 266 bits (679), Expect = 2e-68
Identities = 137/233 (58%), Positives = 163/233 (69%), Gaps = 3/233 (1%)
Frame = -1
Query: 692 QAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLD 513
Q + + TK+PY+EDVGPRKI+SI+FS SG EI K AEVQV N+ YD N KP +N LLD
Sbjct: 2 QEKLRCTKEPYIEDVGPRKIKSIRFSTFSGEEIRKLAEVQVWNNRIYDLNLKPIENGLLD 61
Query: 512 SRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILL 333
RMG N+ C TCHG DCPGH+GYL L LPVFNVGYFN+ILNILKCICK C RILL
Sbjct: 62 PRMGAPNRQTECATCHGNFTDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKGCGRILL 121
Query: 332 SEKERVSYLKRMRNPKAEALQKTATAKAILKSCKPKTCSRCGYVNAVVKKAGTVMGIIHD 153
E R SYLK+MRNPKA+ QK A K + CKP C RCGY N VVKKA + + I D
Sbjct: 122 DETLRKSYLKKMRNPKADIFQKNALMKMVRDKCKPSRCLRCGYANGVVKKARSGLYFIQD 181
Query: 152 RSKKFTDDTDKECKAALSGTKDSGTRIQ---ILNPVRVLGLFKRILDQDCELL 3
SK D + +E ++ALS TKD T Q +L+ V VL LF+++LD+DCELL
Sbjct: 182 FSKT-ADPSVEEFRSALSHTKDK-TSFQVSHVLSAVAVLSLFRKMLDEDCELL 232
>emb|CDP06311.1| unnamed protein product [Coffea canephora]
Length = 312
Score = 265 bits (678), Expect = 3e-68
Identities = 135/242 (55%), Positives = 169/242 (69%), Gaps = 11/242 (4%)
Frame = -1
Query: 695 AQAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALL 516
AQA QFTKQPY+EDVGPRKI+SI+FS EI+KAAEVQV +YD +KP +N LL
Sbjct: 5 AQAPIQFTKQPYIEDVGPRKIESIQFSTFGESEILKAAEVQVYRGVYYDSAKKPWENGLL 64
Query: 515 DSRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARIL 336
D MGPANKN ICETCHG +CPGHYGYL L LPV+NVGY +L+ILKCICK C+ +L
Sbjct: 65 DPHMGPANKNGICETCHGNFRECPGHYGYLTLALPVYNVGYLITVLDILKCICKQCSHVL 124
Query: 335 LSEKERVSYLKRMRNPKAEALQKTATAKAILKSC-------KPKTCSRCGYVNAVVKKAG 177
L EKER+++LK+MRNPK E L+K+ K ++K C K TCSRCGYVN +VKK
Sbjct: 125 LGEKERLNFLKKMRNPKMEPLRKSELQKMVVKRCNALASSRKAATCSRCGYVNGMVKKNT 184
Query: 176 TVMGIIHDRSKKFTDDTDKECKAALSGTKDSGTR----IQILNPVRVLGLFKRILDQDCE 9
++GI+H+R+ K D E +A+S TK+S T ++P V L KR+LD+DCE
Sbjct: 185 KMLGIMHERT-KVNDSFLNEYGSAISHTKESNTSNFSVPDEIDPKVVYSLLKRMLDEDCE 243
Query: 8 LL 3
LL
Sbjct: 244 LL 245
>gb|KHG07033.1| DNA-directed RNA polymerase III subunit RPC1 [Gossypium arboreum]
Length = 1050
Score = 265 bits (676), Expect = 5e-68
Identities = 134/234 (57%), Positives = 166/234 (70%), Gaps = 9/234 (3%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMGP 498
FTK+PY+EDVGPR+I+SIKFSM S EI KAAEVQV +YDP +P + LLD RMGP
Sbjct: 10 FTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDPQSRPIEGGLLDPRMGP 69
Query: 497 ANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKER 318
NK+ C TC G DCPGHYGYL L LPV+NVGY + IL+ILKCICKSC+RILL +K
Sbjct: 70 PNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSRILLDDKLA 129
Query: 317 VSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAGTVMGIIH 156
YLK+MR PK E L+K K+++K C K CSRCGY+N VKKA ++G+ H
Sbjct: 130 KDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKKAPKMIGVFH 189
Query: 155 DRSKKFTDDTDKECKAALSGTKDSGTRI---QILNPVRVLGLFKRILDQDCELL 3
DRS K D++ +E K+A+S TK+S + I +LNPV+VL LFKR+ D DCELL
Sbjct: 190 DRS-KVNDNSSEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDCELL 242
>ref|XP_008813807.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Phoenix dactylifera]
Length = 338
Score = 264 bits (675), Expect = 6e-68
Identities = 137/233 (58%), Positives = 164/233 (70%), Gaps = 3/233 (1%)
Frame = -1
Query: 692 QAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLD 513
Q + + TK+PY+EDVGPRKI+SI+FS SG +I K AEVQV N+ YD N KP +N LLD
Sbjct: 3 QEKLRCTKEPYIEDVGPRKIKSIRFSTFSGEDIRKLAEVQVWNNRIYDLNLKPIENGLLD 62
Query: 512 SRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILL 333
RMG N+ C TCHG DCPGH+GYL L LPVFNVGYFN+ILNILKCICK C RILL
Sbjct: 63 PRMGAPNRQTECATCHGNFTDCPGHFGYLKLILPVFNVGYFNSILNILKCICKGCGRILL 122
Query: 332 SEKERVSYLKRMRNPKAEALQKTATAKAILKSCKPKTCSRCGYVNAVVKKAGTVMGIIHD 153
E R +YLK+MRNPKA+ LQK A K I CKP C RCGY N VVKKA + + I D
Sbjct: 123 DETLRKTYLKKMRNPKADILQKNALMKIIRDKCKPCRCLRCGYANGVVKKARSGLYFIQD 182
Query: 152 RSKKFTDDTDKECKAALSGTKDSGTRIQ---ILNPVRVLGLFKRILDQDCELL 3
SK D + +E ++ALS TKD T Q +L+ V VL LF+++LD+DCELL
Sbjct: 183 FSKT-ADPSVEEFRSALSHTKDK-TSFQVSHVLSAVAVLSLFRKMLDEDCELL 233
>ref|XP_010535561.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Tarenaya
hassleriana]
Length = 1376
Score = 260 bits (665), Expect = 9e-67
Identities = 135/244 (55%), Positives = 171/244 (70%), Gaps = 12/244 (4%)
Frame = -1
Query: 698 EAQAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNAL 519
+A + +FTK+PY+EDVGPR+I+SI+FS+ S E+MKAAEVQV +YD N KP + L
Sbjct: 2 QATKEIEFTKKPYIEDVGPRRIKSIEFSIFSETEVMKAAEVQVWQGVYYDTNGKPIEGGL 61
Query: 518 LDSRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARI 339
LD RMGP NK C TC G +CPGHYGYL L LPV+N+GYFN IL+ILKCICK C+R+
Sbjct: 62 LDPRMGPPNKKGKCTTCDGNFQNCPGHYGYLKLALPVYNIGYFNNILDILKCICKRCSRM 121
Query: 338 LLSEKERVSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAG 177
LL EK YLK+MRNPK E+L+KT AKA++K C K TC +CGY+N +VKKA
Sbjct: 122 LLDEKLSEDYLKKMRNPKMESLKKTELAKAVVKKCSAMASSKIITCKKCGYLNGMVKKAA 181
Query: 176 TV--MGIIHDRSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKRILDQD 15
T +GI HDRS+ D + E K+A+S TK+S I +LNPV VL LFK + ++D
Sbjct: 182 TSSGIGISHDRSRIHEGDVE-EFKSAISHTKESSGAINPITYVLNPVSVLALFKGMSNKD 240
Query: 14 CELL 3
CELL
Sbjct: 241 CELL 244
>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 260 bits (665), Expect = 9e-67
Identities = 136/244 (55%), Positives = 170/244 (69%), Gaps = 12/244 (4%)
Frame = -1
Query: 698 EAQAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNAL 519
E + + +FTK+PY+EDVGP KI+SI FS++S E+MKAAEVQV N G YD + KP +N L
Sbjct: 2 ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61
Query: 518 LDSRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARI 339
LD RMGP NK IC TC G +CPGHYGYL L LPV+NVGYFN IL+ILKCICK C+ +
Sbjct: 62 LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM 121
Query: 338 LLSEKERVSYLKRMRNPKAEALQKTATAKAILKSCKPK------TCSRCGYVNAVVKK-- 183
LL EK +L++MRNP+ E L+KT AKA++K C TC +CGY+N +VKK
Sbjct: 122 LLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181
Query: 182 AGTVMGIIHDRSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKRILDQD 15
A +GI HDRSK + D ECK+A+S TK S I +L+P VLGLFKR+ D+D
Sbjct: 182 AQFGIGISHDRSKIHGGEID-ECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKD 240
Query: 14 CELL 3
CELL
Sbjct: 241 CELL 244
>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
Length = 1376
Score = 260 bits (665), Expect = 9e-67
Identities = 134/244 (54%), Positives = 170/244 (69%), Gaps = 12/244 (4%)
Frame = -1
Query: 698 EAQAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNAL 519
E + + +FTKQPY+EDVGP KI+SI FS++S E+MKAAEVQV + +Y+ N KP +N L
Sbjct: 2 ETKMEIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGL 61
Query: 518 LDSRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARI 339
LD+RMGP NK IC TC G +CPGHYGYL L LPV+NVG+FN IL+ILKCICK C+ +
Sbjct: 62 LDARMGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNM 121
Query: 338 LLSEKERVSYLKRMRNPKAEALQKTATAKAILKSCKPK------TCSRCGYVNAVVKKAG 177
LL EK +L++MRNPK E L+KT AKA++K C TC +CGY+N +VKK
Sbjct: 122 LLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181
Query: 176 TVM--GIIHDRSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKRILDQD 15
M GI HDRSK + D ECK+A+S TK+S I +L+P VLGLFK + D+D
Sbjct: 182 AQMGIGISHDRSKIHGGEVD-ECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKD 240
Query: 14 CELL 3
CELL
Sbjct: 241 CELL 244
>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|939204603|sp|F4JXF9.1|NRPC1_ARATH RecName:
Full=DNA-directed RNA polymerase III subunit 1; AltName:
Full=DNA-directed RNA polymerase III subunit RPC1;
Short=DNA polymerase I subunit C1; AltName: Full=Nuclear
RNA polymerase C1 gi|332009886|gb|AED97269.1| nuclear
RNA polymerase C1 [Arabidopsis thaliana]
Length = 1376
Score = 260 bits (665), Expect = 9e-67
Identities = 136/244 (55%), Positives = 170/244 (69%), Gaps = 12/244 (4%)
Frame = -1
Query: 698 EAQAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNAL 519
E + + +FTK+PY+EDVGP KI+SI FS++S E+MKAAEVQV N G YD + KP +N L
Sbjct: 2 ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61
Query: 518 LDSRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARI 339
LD RMGP NK IC TC G +CPGHYGYL L LPV+NVGYFN IL+ILKCICK C+ +
Sbjct: 62 LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM 121
Query: 338 LLSEKERVSYLKRMRNPKAEALQKTATAKAILKSCKPK------TCSRCGYVNAVVKK-- 183
LL EK +L++MRNP+ E L+KT AKA++K C TC +CGY+N +VKK
Sbjct: 122 LLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181
Query: 182 AGTVMGIIHDRSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKRILDQD 15
A +GI HDRSK + D ECK+A+S TK S I +L+P VLGLFKR+ D+D
Sbjct: 182 AQFGIGISHDRSKIHGGEID-ECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKD 240
Query: 14 CELL 3
CELL
Sbjct: 241 CELL 244
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 260 bits (664), Expect = 1e-66
Identities = 139/249 (55%), Positives = 168/249 (67%), Gaps = 24/249 (9%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRM-- 504
FTKQPY+EDVGPRKI+SI+FSMMS EIMKAAEVQV +Y NR P + LLD RM
Sbjct: 14 FTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDPRMEK 73
Query: 503 -------------GPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKC 363
GPANK+ C TCHG +CPGHYGYL L LPV+NVGY + IL+ILKC
Sbjct: 74 IIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKC 133
Query: 362 ICKSCARILLSEKERVSYLKRMRNPKAEALQKTATAKAILKSC-----KPKTCSRCGYVN 198
ICK C+R+LL EK YLK+MRNPK EAL+KT K+I+K C K C RCGY+N
Sbjct: 134 ICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYIN 193
Query: 197 AVVKKAGTVMGIIHDRSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKR 30
+VKKA V+GIIHDRSK ++ +E +A++ TK+S + ILNPV VL LFKR
Sbjct: 194 GMVKKAVAVLGIIHDRSK--VTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKR 251
Query: 29 ILDQDCELL 3
+ D DCE+L
Sbjct: 252 MTDTDCEVL 260
>ref|XP_010443797.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Camelina sativa]
Length = 1377
Score = 259 bits (663), Expect = 2e-66
Identities = 135/245 (55%), Positives = 168/245 (68%), Gaps = 13/245 (5%)
Frame = -1
Query: 698 EAQAQFQFTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNAL 519
E + + +FTK+PY+EDVG KI+SI FSM+S E+MKAAEVQV N+G+YDPN KP + L
Sbjct: 2 ETKMEIEFTKKPYIEDVGALKIKSINFSMLSDLEVMKAAEVQVWNNGYYDPNNKPHEGGL 61
Query: 518 LDSRMGPANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARI 339
LD RMGP NK IC TC G +CPGHYGYL L LPV+N+GYFN IL+ILKCICK C+ +
Sbjct: 62 LDPRMGPPNKRSICATCEGNFQNCPGHYGYLKLDLPVYNIGYFNFILDILKCICKRCSNM 121
Query: 338 LLSEKERVSYLKRMRNPKAEALQKTATAKAILKSCKPK------TCSRCGYVNAVVKKAG 177
LL EK +L++MR+PK E L+KT AKA++K C TC +CGY N +VKK
Sbjct: 122 LLDEKLYEDHLRKMRSPKMEPLKKTELAKAVVKKCSTMASQRVITCKKCGYQNGMVKKIP 181
Query: 176 TVMGII---HDRSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKRILDQ 18
MG I HDRSK + D E KAA+S TK+S I +L+P VLGLFK + D+
Sbjct: 182 AQMGFIGISHDRSKIHGGEVD-EFKAAISHTKESSQGINPLTYVLDPNVVLGLFKGMSDK 240
Query: 17 DCELL 3
DCELL
Sbjct: 241 DCELL 245
>ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
[Gossypium raimondii]
Length = 1395
Score = 259 bits (662), Expect = 2e-66
Identities = 133/234 (56%), Positives = 165/234 (70%), Gaps = 9/234 (3%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMGP 498
FTK+PY+EDVGPR+I+SIKFSM S EI KAAEVQV +YD +P + LLD RMGP
Sbjct: 10 FTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDLQSRPIEGGLLDPRMGP 69
Query: 497 ANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKER 318
NK+ C TC G DCPGHYGYL L LPV+NVGY + IL+ILKCICKSC+RILL +K
Sbjct: 70 PNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSRILLDDKLA 129
Query: 317 VSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAGTVMGIIH 156
YLK+MR PK E L+K K+++K C K CSRCGY+N VKKA ++G+ H
Sbjct: 130 KDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKKAPKMIGVFH 189
Query: 155 DRSKKFTDDTDKECKAALSGTKDSGTRI---QILNPVRVLGLFKRILDQDCELL 3
DRS K D++ +E K+A+S TK+S + I +LNPV+VL LFKR+ D DCELL
Sbjct: 190 DRS-KVNDNSLEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDCELL 242
>ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
[Gossypium raimondii] gi|763752836|gb|KJB20224.1|
hypothetical protein B456_003G139100 [Gossypium
raimondii]
Length = 1398
Score = 259 bits (662), Expect = 2e-66
Identities = 133/234 (56%), Positives = 165/234 (70%), Gaps = 9/234 (3%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMGP 498
FTK+PY+EDVGPR+I+SIKFSM S EI KAAEVQV +YD +P + LLD RMGP
Sbjct: 10 FTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDLQSRPIEGGLLDPRMGP 69
Query: 497 ANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKER 318
NK+ C TC G DCPGHYGYL L LPV+NVGY + IL+ILKCICKSC+RILL +K
Sbjct: 70 PNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSRILLDDKLA 129
Query: 317 VSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAGTVMGIIH 156
YLK+MR PK E L+K K+++K C K CSRCGY+N VKKA ++G+ H
Sbjct: 130 KDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKKAPKMIGVFH 189
Query: 155 DRSKKFTDDTDKECKAALSGTKDSGTRI---QILNPVRVLGLFKRILDQDCELL 3
DRS K D++ +E K+A+S TK+S + I +LNPV+VL LFKR+ D DCELL
Sbjct: 190 DRS-KVNDNSLEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDCELL 242
>ref|XP_012064930.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha
curcas]
Length = 1413
Score = 256 bits (654), Expect = 2e-65
Identities = 131/235 (55%), Positives = 166/235 (70%), Gaps = 10/235 (4%)
Frame = -1
Query: 677 FTKQPYVEDVGPRKIQSIKFSMMSGPEIMKAAEVQVCNSGFYDPNRKPKKNALLDSRMGP 498
+TK PY+EDVGPRKI+SI+FS+MSG EI+KAAE QV +YD NRKP + LLD+ MGP
Sbjct: 13 YTKHPYIEDVGPRKIKSIQFSLMSGHEIVKAAECQVYLGQYYDTNRKPVQGGLLDTHMGP 72
Query: 497 ANKNIICETCHGKLIDCPGHYGYLHLCLPVFNVGYFNAILNILKCICKSCARILLSEKER 318
ANKN +C+TC DCPGH+GYL+L LPVFNVGY IL+ILKCICKSC+RIL EK+
Sbjct: 73 ANKNSMCQTCGANFNDCPGHFGYLNLVLPVFNVGYMTNILDILKCICKSCSRILFDEKQC 132
Query: 317 VSYLKRMRNPKAEALQKTATAKAILKSC------KPKTCSRCGYVNAVVKKAGTVMGIIH 156
++LK+MR+ E L++T K I+K C K C RCG +N +VKKAG+ + IIH
Sbjct: 133 KAHLKKMRSRNLEHLKRTDLVKKIVKKCSAMASNKAVRCMRCGDMNGMVKKAGSALSIIH 192
Query: 155 DRSKKFTDDTDKECKAALSGTKDSGTRIQ----ILNPVRVLGLFKRILDQDCELL 3
DR K D +ECK+A+S TK+ I ILNP RVL LF+RI ++DCE+L
Sbjct: 193 DRG-KLIDGYLEECKSAISHTKEFRAPISPATYILNPARVLSLFERIPEEDCEVL 246