BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00021932
         (971 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD,...   193   4e-76
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              193   4e-76
ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD,...   194   3e-74
ref|XP_006851106.1| PREDICTED: RNA polymerase sigma factor sigD,...   184   8e-67
ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus nota...   164   2e-65
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr...   167   1e-62
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,...   167   3e-62
ref|XP_011025491.1| PREDICTED: RNA polymerase sigma factor sigD,...   167   6e-62
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu...   168   1e-61
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,...   172   1e-61
ref|XP_010922212.1| PREDICTED: RNA polymerase sigma factor sigD,...   159   2e-61
gb|AKC88710.1| sigma factor [Hypseocharis bilobata]                   167   5e-61
ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD,...   163   1e-60
ref|XP_012065613.1| PREDICTED: RNA polymerase sigma factor sigD,...   167   2e-60
ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD,...   152   2e-60
ref|XP_008806591.1| PREDICTED: RNA polymerase sigma factor sigD,...   156   3e-60
ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Popu...   161   9e-60
ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD,...   154   1e-59
ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD,...   154   2e-59
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   151   3e-59

>ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Vitis
           vinifera]
          Length = 442

 Score =  193 bits (491), Expect(2) = 4e-76
 Identities = 100/141 (70%), Positives = 118/141 (83%)
 Frame = -2

Query: 778 LTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRIS 599
           LT +EEAEF + LKEE A LEAAR ++ A+TR+ EPT ++WAEAVG+KRSSL++ +    
Sbjct: 146 LTPREEAEFCLCLKEE-AGLEAARRRI-AETREHEPTSNQWAEAVGIKRSSLDKMLCNGR 203

Query: 598 QSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVYW 419
           +SR RI  SYRRLVVSIA  YQGKGLSLQDL+QEGSIGLLRGAERFDP +G+KLSTYVYW
Sbjct: 204 ESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYW 263

Query: 418 WIKQAIIRAIEQKSRTIRLPG 356
           WI+QAI+RAI  KSR IRLPG
Sbjct: 264 WIRQAIVRAIANKSRIIRLPG 284



 Score =  120 bits (301), Expect(2) = 4e-76
 Identities = 62/119 (52%), Positives = 83/119 (69%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+CEMVAKIA+  T L+ +L R PTY+EIA+   ++VS +RL S+ +RTPIS+DQ   T
Sbjct: 284 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQA-VT 342

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC+TL+EIIPGPDET P+ MV+RQ MKQ               ++L L+FG+NG+TP
Sbjct: 343 SQGCMTLQEIIPGPDETTPQKMVKRQLMKQE-VERALNTLCEREAYILRLYFGINGETP 400


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  193 bits (491), Expect(2) = 4e-76
 Identities = 100/141 (70%), Positives = 118/141 (83%)
 Frame = -2

Query: 778 LTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRIS 599
           LT +EEAEF + LKEE A LEAAR ++ A+TR+ EPT ++WAEAVG+KRSSL++ +    
Sbjct: 23  LTPREEAEFCLCLKEE-AGLEAARRRI-AETREHEPTSNQWAEAVGIKRSSLDKMLCNGR 80

Query: 598 QSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVYW 419
           +SR RI  SYRRLVVSIA  YQGKGLSLQDL+QEGSIGLLRGAERFDP +G+KLSTYVYW
Sbjct: 81  ESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYW 140

Query: 418 WIKQAIIRAIEQKSRTIRLPG 356
           WI+QAI+RAI  KSR IRLPG
Sbjct: 141 WIRQAIVRAIANKSRIIRLPG 161



 Score =  120 bits (301), Expect(2) = 4e-76
 Identities = 62/119 (52%), Positives = 83/119 (69%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+CEMVAKIA+  T L+ +L R PTY+EIA+   ++VS +RL S+ +RTPIS+DQ   T
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQA-VT 219

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC+TL+EIIPGPDET P+ MV+RQ MKQ               ++L L+FG+NG+TP
Sbjct: 220 SQGCMTLQEIIPGPDETTPQKMVKRQLMKQE-VERALNTLCEREAYILRLYFGINGETP 277


>ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nelumbo
           nucifera]
          Length = 455

 Score =  194 bits (494), Expect(2) = 3e-74
 Identities = 99/142 (69%), Positives = 117/142 (82%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YLT KEEAEFS+ LKEE ARLEAAR +L  +T + EPT S+WAEA GM+ ++L++ + + 
Sbjct: 158 YLTPKEEAEFSLYLKEE-ARLEAARTRL-RETNEHEPTSSQWAEAAGMRGATLDKMLCQA 215

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
            +SR RI  SYRRL+ SIA+ YQGKGLSLQDL+QEGSIGLLRG ERFDP KG+KLSTYVY
Sbjct: 216 RESRERIVFSYRRLIFSIASGYQGKGLSLQDLIQEGSIGLLRGXERFDPRKGYKLSTYVY 275

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWIKQAIIRAI  KSR +RLPG
Sbjct: 276 WWIKQAIIRAIASKSRMVRLPG 297



 Score =  112 bits (281), Expect(2) = 3e-74
 Identities = 61/119 (51%), Positives = 80/119 (67%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+ EM+AKIA+ NT L+++LGR PTY+EIAD  GI VS + L  + +R P+S+D+T   
Sbjct: 297 GSVSEMMAKIAEANTVLSTRLGRVPTYDEIADMLGICVSTVSLLCERSRPPMSVDRTYSD 356

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
            HGC+ L+EII GP+ET PETMV RQ MKQ                +L L+FGLNG+TP
Sbjct: 357 -HGCMKLQEIISGPEETTPETMVNRQLMKQEVERLLKILGEREAN-ILRLYFGLNGETP 413


>ref|XP_006851106.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic
           [Amborella trichopoda] gi|548854777|gb|ERN12687.1|
           hypothetical protein AMTR_s00025p00248060 [Amborella
           trichopoda]
          Length = 449

 Score =  184 bits (468), Expect(2) = 8e-67
 Identities = 96/143 (67%), Positives = 115/143 (80%)
 Frame = -2

Query: 784 NYLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILR 605
           +YLT +EEAEFS+ L+E GARLE  R KL  + R  EP+  +WAEAVGM+ SS+ER +  
Sbjct: 149 DYLTRREEAEFSLCLRE-GARLEGIRRKL-REKRGREPSRGQWAEAVGMRESSMERRLGI 206

Query: 604 ISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYV 425
             + RNRIT SYRRLVVSIAT+Y GKG+SL DL+QEGS+GLLRGAERFD  +G+KLSTYV
Sbjct: 207 ARECRNRITNSYRRLVVSIATSYPGKGMSLSDLIQEGSLGLLRGAERFDHRRGYKLSTYV 266

Query: 424 YWWIKQAIIRAIEQKSRTIRLPG 356
           YWWIKQAII+AI  KSR +RLPG
Sbjct: 267 YWWIKQAIIKAIATKSRIVRLPG 289



 Score = 98.2 bits (243), Expect(2) = 8e-67
 Identities = 54/119 (45%), Positives = 77/119 (64%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GSMC  VAK+++ +  L S+LGR P+ EEIA+  GI +S +RL ++  R P+S+DQ P  
Sbjct: 289 GSMCATVAKVSEASGVLMSRLGRRPSQEEIAEKTGIALSRVRLVTERCRLPLSIDQ-PLG 347

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
            HG ++LK+II GP+ETRPE MV+R+ MK               E ++ L FG+NG+TP
Sbjct: 348 RHGDISLKDIIAGPEETRPEEMVKREWMK-GTMEMLLQTLSEREECIVRLQFGMNGETP 405


>ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus notabilis]
           gi|587907279|gb|EXB95293.1| RNA polymerase sigma factor
           rpoD [Morus notabilis]
          Length = 422

 Score =  164 bits (416), Expect(2) = 2e-65
 Identities = 84/142 (59%), Positives = 110/142 (77%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YL+ +EEAE  + LKE GA+LEA R ++  ++   EPT  E A+A+GM+  S+++ +   
Sbjct: 122 YLSPREEAECCLILKE-GAKLEATRLRM-TNSEDHEPTSKELAKAMGMEMRSIDKMLCDK 179

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
            +S+ RI+ SYRRLVVS+A  YQGKGLS  DL+QEGS+GLLRGA++FDP +G KLSTYVY
Sbjct: 180 RESQERISRSYRRLVVSVAAGYQGKGLSFPDLIQEGSVGLLRGAQKFDPQRGNKLSTYVY 239

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWI+QAIIRAIE KSR +RLPG
Sbjct: 240 WWIRQAIIRAIENKSRVVRLPG 261



 Score =  113 bits (283), Expect(2) = 2e-65
 Identities = 59/119 (49%), Positives = 75/119 (63%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           G+MC +VAK+ + N  L  +L R+PTY+EIA   G+ VS +RL S+  R PISLD+   T
Sbjct: 261 GNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRA-IT 319

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC+TL+EIIPGP+E  PE MVR+Q MKQ                VL LHFGL+GD P
Sbjct: 320 ERGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIP 378


>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
           gi|557541154|gb|ESR52198.1| hypothetical protein
           CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  167 bits (422), Expect(2) = 1e-62
 Identities = 89/142 (62%), Positives = 107/142 (75%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YLT  EEAE    LKE GA+LE AR K  A   + E    + A+A GMK+S +++ + + 
Sbjct: 139 YLTPSEEAEICYSLKE-GAKLEEAR-KTVAQAEEHESISKQLAKATGMKQSKVDKILCKE 196

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
            +S+ RI  SYR LVVSIAT YQGKGLSL+DL+QEGSIGLLRGA+RF+P +G+KLSTYVY
Sbjct: 197 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 256

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWIKQAIIR I  KSRTIRLPG
Sbjct: 257 WWIKQAIIRTIANKSRTIRLPG 278



 Score =  102 bits (253), Expect(2) = 1e-62
 Identities = 60/119 (50%), Positives = 74/119 (62%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GSM  MVAKIA+ N  L+ +L R PT  EIA+   I VS +RLA +  R PISLD    T
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGA-IT 336

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC+TL++IIPGPDET PE MV++Q MKQ              + +L LHFGL+G TP
Sbjct: 337 DTGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREAD-ILRLHFGLDGQTP 394


>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Citrus sinensis]
          Length = 436

 Score =  167 bits (422), Expect(2) = 3e-62
 Identities = 89/142 (62%), Positives = 107/142 (75%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YLT  EEAE    LKE GA+LE AR K  A   + E    + A+A GMK+S +++ + + 
Sbjct: 139 YLTPSEEAEICYSLKE-GAKLEEAR-KTVAQAEEHESISKQLAKATGMKQSKVDKILCKE 196

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
            +S+ RI  SYR LVVSIAT YQGKGLSL+DL+QEGSIGLLRGA+RF+P +G+KLSTYVY
Sbjct: 197 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 256

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWIKQAIIR I  KSRTIRLPG
Sbjct: 257 WWIKQAIIRTIANKSRTIRLPG 278



 Score =  100 bits (250), Expect(2) = 3e-62
 Identities = 60/119 (50%), Positives = 74/119 (62%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GSM  MVAKIA+ N  L+ +L R PT  EIA+   I VS +RLA +  R PISLD    T
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGA-IT 336

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC+TL++IIPGPDET PE MV++Q MKQ              + +L LHFGL+G TP
Sbjct: 337 DTGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREAD-ILRLHFGLDGQTP 394


>ref|XP_011025491.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X1 [Populus euphratica]
          Length = 423

 Score =  167 bits (424), Expect(2) = 6e-62
 Identities = 85/141 (60%), Positives = 113/141 (80%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YL+ KEEAEFSM LK E AR+EAAR ++  D ++ +PT  + A+A+ M++++++  + + 
Sbjct: 125 YLSPKEEAEFSMCLKHE-ARIEAARRRI-GDVQELDPTSKQLAKALRMEKNTVDNVLCKG 182

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
            +SR +I  SYRRLVVSIAT+YQ KGLSLQDL+QEGSIGLLRGAERFDP +G+KLSTYVY
Sbjct: 183 RESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTYVY 242

Query: 421 WWIKQAIIRAIEQKSRTIRLP 359
           WWIK+AI+ AI   +R +RLP
Sbjct: 243 WWIKEAILTAISNNTRMVRLP 263



 Score = 99.0 bits (245), Expect(2) = 6e-62
 Identities = 54/114 (47%), Positives = 71/114 (62%)
 Frame = -3

Query: 342 MVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPTLHGCV 163
           +VAKIA  N  L++KL R P+Y+EIA+   + VS +RL  +  R+PISLDQ     +  +
Sbjct: 269 LVAKIAGANNDLSNKLRRSPSYDEIAEVLNMKVSTVRLGFERGRSPISLDQAVLGQNS-L 327

Query: 162 TLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
           TL+EIIPGPDET PE MV+R+ +KQ                +L LHFGLNG TP
Sbjct: 328 TLQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTP 381


>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
           gi|550331146|gb|ERP56881.1| hypothetical protein
           POPTR_0009s06210g [Populus trichocarpa]
          Length = 423

 Score =  168 bits (425), Expect(2) = 1e-61
 Identities = 90/162 (55%), Positives = 119/162 (73%)
 Frame = -2

Query: 844 EVDARNEYLEKXXXXXXXXSNYLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTI 665
           E D  +EY  K          YL+ KEEAEFSM LK E AR+EAAR ++  + ++ +PT 
Sbjct: 106 ERDGGHEY--KRVILESVKRGYLSPKEEAEFSMCLKHE-ARIEAARRRI-GEVQELDPTS 161

Query: 664 SEWAEAVGMKRSSLERAILRISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIG 485
            + A+A+ M+++S++  + +  +SR +I  SYRRLVVSIAT+YQ KGLSLQDL+QEGSIG
Sbjct: 162 KQLAKALRMEKNSVDNVLCKGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIG 221

Query: 484 LLRGAERFDPGKGFKLSTYVYWWIKQAIIRAIEQKSRTIRLP 359
           LLRGAERFDP +G+KLSTYVYWWIK+AI+ AI   +R +RLP
Sbjct: 222 LLRGAERFDPQRGYKLSTYVYWWIKEAILTAISNNTRMVRLP 263



 Score = 97.8 bits (242), Expect(2) = 1e-61
 Identities = 54/114 (47%), Positives = 70/114 (61%)
 Frame = -3

Query: 342 MVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPTLHGCV 163
           +VAKIA  N  L++KL R P+Y+EIA    + VS +RL  +  R+PISLDQ     +  +
Sbjct: 269 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNS-L 327

Query: 162 TLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
           TL+EIIPGPDET PE MV+R+ +KQ                +L LHFGLNG TP
Sbjct: 328 TLQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTP 381


>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic
           [Fragaria vesca subsp. vesca]
          Length = 452

 Score =  172 bits (435), Expect(2) = 1e-61
 Identities = 94/169 (55%), Positives = 122/169 (72%), Gaps = 1/169 (0%)
 Frame = -2

Query: 859 GVNFFEVDARNEYLEKXXXXXXXXS-NYLTAKEEAEFSMDLKEEGARLEAARNKLWADTR 683
           G+  F+ + RN  LE         S  YL+ +EEA+  M LKE GA+LE+ R + + + +
Sbjct: 128 GLECFDDEERNRELEDGRFSFGVVSYGYLSPREEADCCMSLKE-GAKLESERTR-FTEAQ 185

Query: 682 KEEPTISEWAEAVGMKRSSLERAILRISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLV 503
           + EPT  + A A+ +K SS+++ I    +S+ RI  SYR LVVS+A++YQGKGLSLQDL+
Sbjct: 186 EHEPTSKQLANAMRIKMSSIDKVICNRRESQERIIKSYRGLVVSVASSYQGKGLSLQDLI 245

Query: 502 QEGSIGLLRGAERFDPGKGFKLSTYVYWWIKQAIIRAIEQKSRTIRLPG 356
           QEGSIGLLRGAE+FDP +G KLSTYVYWWI+QAIIRAIE KSR IRLPG
Sbjct: 246 QEGSIGLLRGAEKFDPERGLKLSTYVYWWIRQAIIRAIENKSRIIRLPG 294



 Score = 93.6 bits (231), Expect(2) = 1e-61
 Identities = 50/119 (42%), Positives = 71/119 (59%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           G MC ++AKI +       +  R P+++EIA+   +  S++RL  + +R P+SLD+   T
Sbjct: 294 GHMCGVMAKITRAKKNFNQRFQRLPSHDEIAEMINVQASIVRLVCERSRLPLSLDRV-VT 352

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC+ L++II GPDE  PETM+++Q MKQ              E VL LHFGLNGDTP
Sbjct: 353 DQGCMALQDIIRGPDEMMPETMLKKQLMKQEMEKLLNRLSDREAE-VLRLHFGLNGDTP 410


>ref|XP_010922212.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Elaeis
           guineensis]
          Length = 455

 Score =  159 bits (402), Expect(2) = 2e-61
 Identities = 93/159 (58%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
 Frame = -2

Query: 829 NEYLEKXXXXXXXXSNYLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAE 650
           N YL +        S YLT +EEAEFS  LK+E A LE A  ++    R+  P  S  A 
Sbjct: 144 NSYLIEGCSSRSERSRYLTTREEAEFSRYLKQE-AMLETAGKQI----RECSPLDSGCAA 198

Query: 649 -AVGMKRSSLERAILRISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRG 473
            A  MKR   ER +L+  + R RITLSY+RLVVSIAT YQGKGLSLQDL+QEG IGLLRG
Sbjct: 199 IAARMKRRHSERTLLKARECRERITLSYKRLVVSIATPYQGKGLSLQDLIQEGCIGLLRG 258

Query: 472 AERFDPGKGFKLSTYVYWWIKQAIIRAIEQKSRTIRLPG 356
           A RFD  KG+KLSTY YWWI+QAI++AI  KSR +RLPG
Sbjct: 259 AWRFDYKKGYKLSTYAYWWIRQAILKAIANKSRMVRLPG 297



 Score =  105 bits (263), Expect(2) = 2e-61
 Identities = 56/118 (47%), Positives = 77/118 (65%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           G++CE   KI K+N+ L  +LGR PTY+EIAD  GI  S +R+ S+ +R PIS+DQ  P 
Sbjct: 297 GNLCEAANKIMKSNSLLRKQLGRNPTYDEIADFTGIGASSVRIISERSRHPISVDQ--PV 354

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDT 4
               +TLK+IIPGPDE RPE +V RQ+M QN             ++++ LH+GLNG+T
Sbjct: 355 NKQGLTLKDIIPGPDEIRPEVLVNRQEMLQN-MEKLLKTLSGREQYIITLHYGLNGET 411


>gb|AKC88710.1| sigma factor [Hypseocharis bilobata]
          Length = 437

 Score =  167 bits (424), Expect(2) = 5e-61
 Identities = 86/142 (60%), Positives = 110/142 (77%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           +LT K+EAEF M LKE GARLEA R KL A+  K+EP++ + A A+GMK+ +++R +   
Sbjct: 137 HLTPKQEAEFCMCLKE-GARLEAQRRKL-AEACKQEPSLKQLAMAMGMKKRNIDRILCNR 194

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
             S+  I  +YR LVVSIA  YQG+GLSLQDL+Q GSIGLLRGAERFDP +G+KLSTYVY
Sbjct: 195 RVSQETIIRTYRGLVVSIAIGYQGRGLSLQDLIQAGSIGLLRGAERFDPNRGYKLSTYVY 254

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WW++QAI++A+   SR IRLPG
Sbjct: 255 WWVRQAIVKAVANDSRLIRLPG 276



 Score = 95.9 bits (237), Expect(2) = 5e-61
 Identities = 49/119 (41%), Positives = 74/119 (62%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+C+M+ KIA+    L+ +L R P+Y+EIA+   + VS +RL  + +R PISLD+   T
Sbjct: 276 GSVCDMLVKIAEAKNTLSIRLRRLPSYDEIAELLNVQVSTVRLICRRSRPPISLDRRIVT 335

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC+TL++IIPGPDE  PE ++++Q +KQ                +L L +GL+G TP
Sbjct: 336 DQGCMTLQDIIPGPDERTPEKILKKQLIKQEVEKLLNTLSERESC-ILRLRYGLDGITP 393


>ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Sesamum
           indicum]
          Length = 446

 Score =  163 bits (413), Expect(2) = 1e-60
 Identities = 83/152 (54%), Positives = 111/152 (73%), Gaps = 10/152 (6%)
 Frame = -2

Query: 781 YLTAKEEAEFSM----------DLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKR 632
           ++T+KEEA FS           DL++E AR+ A + +L A+T + E + S+WA+A G+ +
Sbjct: 138 FMTSKEEARFSWIHEDTNSLEYDLQQERARIVAVKTELLAETGRREVSSSQWAKAAGISQ 197

Query: 631 SSLERAILRISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPG 452
            +L+R +    +S  RIT  YRRLVVSIA++YQGKGLSLQDL QEGSIGLLRGA +F+P 
Sbjct: 198 RNLDRILCNGRESEERITSCYRRLVVSIASSYQGKGLSLQDLTQEGSIGLLRGAIKFNPE 257

Query: 451 KGFKLSTYVYWWIKQAIIRAIEQKSRTIRLPG 356
           +G+KLSTY YWWI+Q+I RAI  KS+ IRLPG
Sbjct: 258 RGYKLSTYAYWWIRQSITRAIANKSKIIRLPG 289



 Score = 99.0 bits (245), Expect(2) = 1e-60
 Identities = 52/119 (43%), Positives = 75/119 (63%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+ E+V KI + N AL+ +L R PTY+EIA+    + S +RLA + NR+PISLD+   T
Sbjct: 289 GSISELVPKICEANAALSRRLRRPPTYDEIAEAIDANSSAVRLAIERNRSPISLDEA-IT 347

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             GC++L++I+ GPDE  PE MV++ Q+K                 +L LH+GLNG+TP
Sbjct: 348 SQGCMSLQDIVAGPDEITPEAMVKKDQLKPE-IQKLLKPLCDREAHILRLHYGLNGETP 405


>ref|XP_012065613.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X1 [Jatropha curcas] gi|643737466|gb|KDP43578.1|
           hypothetical protein JCGZ_16865 [Jatropha curcas]
          Length = 429

 Score =  167 bits (422), Expect(2) = 2e-60
 Identities = 89/168 (52%), Positives = 120/168 (71%)
 Frame = -2

Query: 859 GVNFFEVDARNEYLEKXXXXXXXXSNYLTAKEEAEFSMDLKEEGARLEAARNKLWADTRK 680
           G +F  V+       +        + YL+  EE EF + LK++ ARLEAAR ++ A+T++
Sbjct: 106 GSDFVAVEEEKNGQNETALFQSSSNGYLSPIEETEFCLCLKDQ-ARLEAARRRI-AETQE 163

Query: 679 EEPTISEWAEAVGMKRSSLERAILRISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQ 500
            EPT+ + A+A+ M+R S+ +   +  +SR RIT  Y+RLVVSIA +Y+GKGLSLQDL+Q
Sbjct: 164 HEPTLKQLAKALKMRRRSVGKIPCKGRESRRRITYYYKRLVVSIAKSYRGKGLSLQDLIQ 223

Query: 499 EGSIGLLRGAERFDPGKGFKLSTYVYWWIKQAIIRAIEQKSRTIRLPG 356
           EGSIGLLRGAERFDP +G KLSTYVYWWI++AII +I  KSR +RLPG
Sbjct: 224 EGSIGLLRGAERFDPSRGNKLSTYVYWWIREAIITSISNKSRIVRLPG 271



 Score = 94.7 bits (234), Expect(2) = 2e-60
 Identities = 53/119 (44%), Positives = 70/119 (58%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           G M E   KIA+   AL  +LGR P+Y+EIA    + +S +R+  +SNR P+SLD+    
Sbjct: 271 GGMREKKKKIAEARIALEKRLGRLPSYDEIAQALNLHISTVRIGFESNRFPVSLDRAMSD 330

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             G +TL+EI+PGPDE  PE MV+RQ +KQ               +VL L FGLNG TP
Sbjct: 331 -QGGMTLQEILPGPDEMMPEYMVKRQLLKQE-LDKLLQTLSEREAYVLRLTFGLNGQTP 387


>ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X1 [Solanum lycopersicum]
          Length = 423

 Score =  152 bits (384), Expect(2) = 2e-60
 Identities = 79/142 (55%), Positives = 105/142 (73%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YLT KEEA++S  LKEE AR+E  R K+  +T + + +  + A+A GM    L++ ++  
Sbjct: 125 YLTHKEEAKYSWYLKEE-ARIEILR-KMVEETSEIDLSSKQLAKAAGMSTRRLDKLLINA 182

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
            +S+ +I   YR LVVS+A +YQGKGLSLQDL+QEGSIGLL GA++F+P KG+KLSTY Y
Sbjct: 183 KESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKFNPKKGYKLSTYAY 242

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWI+QAI RA+  KSR IRLPG
Sbjct: 243 WWIRQAISRAVANKSRVIRLPG 264



 Score =  108 bits (271), Expect(2) = 2e-60
 Identities = 57/119 (47%), Positives = 75/119 (63%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+ E+V KI   NT L+ KL R P+Y+EIA+  G+DVS +RL  + NR PIS+DQ   T
Sbjct: 264 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQI-VT 322

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             G ++L+ II GP++T PE  V+RQ MKQ+               +L LHFGLNGDTP
Sbjct: 323 TQGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTP 381


>ref|XP_008806591.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Phoenix
           dactylifera]
          Length = 449

 Score =  156 bits (394), Expect(2) = 3e-60
 Identities = 89/159 (55%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
 Frame = -2

Query: 829 NEYLEKXXXXXXXXSNYLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAE 650
           + YL +        S YLT +EEAEFS  LK+E A LE A  ++    R   P  S  A 
Sbjct: 138 SRYLMEGCSSRSERSRYLTPREEAEFSHYLKQE-AMLETAGKQI----RDCSPLDSGCAA 192

Query: 649 -AVGMKRSSLERAILRISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRG 473
            +  MKR + ER +L+  + R RITLSY+RLVVSIAT YQGKGL LQDL+QEG IGLLRG
Sbjct: 193 ISASMKRRNSERTLLKARECRERITLSYKRLVVSIATPYQGKGLGLQDLIQEGCIGLLRG 252

Query: 472 AERFDPGKGFKLSTYVYWWIKQAIIRAIEQKSRTIRLPG 356
           A RFD  KG+KLSTY YWWI+QAI++AI  KSR +R+PG
Sbjct: 253 ARRFDSKKGYKLSTYAYWWIRQAILKAIANKSRMVRMPG 291



 Score =  104 bits (260), Expect(2) = 3e-60
 Identities = 56/118 (47%), Positives = 79/118 (66%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           G++CE + KI ++ + L  +LGR PTY+EIAD AGI VS +R+ S+ +R PIS+DQ  P 
Sbjct: 291 GNLCEAMNKIMESKSLLRRQLGRNPTYDEIADFAGIGVSSVRIISERSRHPISVDQ--PV 348

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDT 4
               +TLK+IIPGPDE RPE +V RQ+M QN             ++++ LH+GLNG+T
Sbjct: 349 NKQGLTLKDIIPGPDEIRPEVIVNRQEMLQN-MGKLLKILNGREQYIIRLHYGLNGET 405


>ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
           gi|550331145|gb|ERP56880.1| hypothetical protein
           POPTR_0009s06210g [Populus trichocarpa]
          Length = 419

 Score =  161 bits (408), Expect(2) = 9e-60
 Identities = 88/160 (55%), Positives = 116/160 (72%)
 Frame = -2

Query: 844 EVDARNEYLEKXXXXXXXXSNYLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTI 665
           E D  +EY  K          YL+ KEEAEFSM LK E AR+EAAR ++  + ++ +PT 
Sbjct: 106 ERDGGHEY--KRVILESVKRGYLSPKEEAEFSMCLKHE-ARIEAARRRI-GEVQELDPTS 161

Query: 664 SEWAEAVGMKRSSLERAILRISQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIG 485
            + A+A+ M+++S++  + +  +SR +I  SYRRLVVSIAT+YQ KGLSLQDL+QEGSIG
Sbjct: 162 KQLAKALRMEKNSVDNVLCKGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIG 221

Query: 484 LLRGAERFDPGKGFKLSTYVYWWIKQAIIRAIEQKSRTIR 365
           LLRGAERFDP +G+KLSTYVYWWIK+AI+ AI   +R  R
Sbjct: 222 LLRGAERFDPQRGYKLSTYVYWWIKEAILTAISNNTRMRR 261



 Score = 97.8 bits (242), Expect(2) = 9e-60
 Identities = 54/114 (47%), Positives = 70/114 (61%)
 Frame = -3

Query: 342 MVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPTLHGCV 163
           +VAKIA  N  L++KL R P+Y+EIA    + VS +RL  +  R+PISLDQ     +  +
Sbjct: 265 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNS-L 323

Query: 162 TLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
           TL+EIIPGPDET PE MV+R+ +KQ                +L LHFGLNG TP
Sbjct: 324 TLQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTP 377


>ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic
           [Nicotiana tomentosiformis]
          Length = 416

 Score =  154 bits (390), Expect(2) = 1e-59
 Identities = 81/142 (57%), Positives = 105/142 (73%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YLT KEE+E+S  LKEE AR+E  R ++  +T + E   ++ A+A GM R  L++ ++  
Sbjct: 118 YLTLKEESEYSWYLKEE-ARIETLRKRV-EETSEIELNPNQLAKAAGMSRRRLDKLLVNA 175

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
             S+ +I   YR LVVS+A +YQGKGLSLQDL+QEGSIGLL GA++F+P KG+KLSTY Y
Sbjct: 176 KISQKKIIKCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKFNPKKGYKLSTYAY 235

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWI+QAI RAI  KSR IRLPG
Sbjct: 236 WWIRQAITRAIANKSRVIRLPG 257



 Score =  104 bits (259), Expect(2) = 1e-59
 Identities = 55/119 (46%), Positives = 75/119 (63%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+ E+V KI   NT L+ KL R P+Y+EIA+   +DVS +RL  + NR PIS+DQ   T
Sbjct: 257 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDMDVSTVRLVIERNRAPISIDQI-VT 315

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             G ++L++II GP++  PE +V+RQ MKQ+               +L LHFGLNGDTP
Sbjct: 316 SKGYMSLQDIISGPEDIIPEEIVKRQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTP 374


>ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic
           [Nicotiana sylvestris]
          Length = 426

 Score =  154 bits (389), Expect(2) = 2e-59
 Identities = 80/142 (56%), Positives = 104/142 (73%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YLT KEE+E+S  LKEE AR+E  R ++  +T + E   ++ A+A GM R  L++ ++  
Sbjct: 128 YLTLKEESEYSWYLKEE-ARMETLRKRV-EETSEIEVNPNQLAKAAGMSRRRLDKVLINA 185

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
             S+ +I   Y  LVVS+A +YQGKGLSLQDL+QEGSIGLL GA++F+P KG+KLSTY Y
Sbjct: 186 KISQKKIIKCYTGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKFNPNKGYKLSTYAY 245

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWI+QAI RAI  KSR IRLPG
Sbjct: 246 WWIRQAITRAIANKSRVIRLPG 267



 Score =  103 bits (258), Expect(2) = 2e-59
 Identities = 54/119 (45%), Positives = 75/119 (63%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+ E+V KI   NT L+ KL R P+Y+EIA+   +DVS +RL  + NR PIS+DQ   T
Sbjct: 267 GSISELVPKICNANTELSRKLQRMPSYDEIAEALDMDVSTVRLVIERNRAPISIDQI-VT 325

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             G ++L++II GP++  PE +++RQ MKQ+               +L LHFGLNGDTP
Sbjct: 326 SQGYMSLQDIISGPEDILPEEILKRQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTP 384


>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum tuberosum]
          Length = 421

 Score =  151 bits (381), Expect(2) = 3e-59
 Identities = 78/142 (54%), Positives = 105/142 (73%)
 Frame = -2

Query: 781 YLTAKEEAEFSMDLKEEGARLEAARNKLWADTRKEEPTISEWAEAVGMKRSSLERAILRI 602
           YLT +EEA++S  LKEE AR+E  R K+  +T + + +  + A+A GM    L++ ++  
Sbjct: 123 YLTHEEEAKYSWYLKEE-ARIEILR-KMVEETSEIDLSSKQLAKAAGMSTQRLDKLLINA 180

Query: 601 SQSRNRITLSYRRLVVSIATAYQGKGLSLQDLVQEGSIGLLRGAERFDPGKGFKLSTYVY 422
            +S+ +I   YR LVVS+A +YQGKGLSLQDL+QEGSIGLL GA++F+P KG+KLSTY Y
Sbjct: 181 KESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKFNPKKGYKLSTYAY 240

Query: 421 WWIKQAIIRAIEQKSRTIRLPG 356
           WWI+QAI RA+  KSR IRLPG
Sbjct: 241 WWIRQAISRAVANKSRVIRLPG 262



 Score =  106 bits (265), Expect(2) = 3e-59
 Identities = 56/119 (47%), Positives = 74/119 (62%)
 Frame = -3

Query: 357 GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 178
           GS+ E+V KI   NT L+ KL R P+Y+EIA+  G+DVS +RL  + NR PIS+DQ   T
Sbjct: 262 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQI-VT 320

Query: 177 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXEFVLYLHFGLNGDTP 1
             G ++L+ II GP++T PE  V+RQ MKQ+               +L LHFGLNGD P
Sbjct: 321 SQGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNP 379