BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00020843
         (2077 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   548   e-153
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   548   e-153
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   548   e-153
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   528   e-146
ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su...   525   e-146
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su...   525   e-146
ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV su...   523   e-145
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su...   523   e-145
ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV su...   521   e-145
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   521   e-145
ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV su...   520   e-144
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su...   520   e-144
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   513   e-142
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   510   e-141
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   510   e-141
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   509   e-141
ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV su...   509   e-141
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   509   e-141
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   509   e-141
ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV su...   508   e-140

>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
            vinifera]
          Length = 1354

 Score =  548 bits (1412), Expect = e-153
 Identities = 316/718 (44%), Positives = 431/718 (60%), Gaps = 26/718 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPL C P RGDFDGDCL  Y+PQS+DSRVEL E                 
Sbjct: 323  VLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGR-- 380

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + + Q  + + HL             V ED   L+  
Sbjct: 381  ---------------------NLLSLSQDSLSAAHL-------------VMEDGVLLNLF 406

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +  +SPAI+KAP     +WTGKQL SML+P  FN+ FP+N          
Sbjct: 407  QMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELI 466

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 SAWL+D D +++S+LV++  GK LD L++AQE+L EW+SMRG SVSLSDIYLSS+
Sbjct: 467  SSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSD 526

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDIDNRLC 1177
            S SR NM++EV  GL  A Q    K  L++    +N L  S +  N +   V D+ +   
Sbjct: 527  SISRKNMIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQNGVVPDVQSLWY 582

Query: 1176 D------LTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLG 1015
            +      L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+LLKLV Q LCLG
Sbjct: 583  ERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLG 642

Query: 1014 LQHSSAPLSFRVPSMLSCSARNHSDFDTPG-----------SHILYAVIENSFLSGLDPL 868
            LQHS  PLSF++P  LSC+A N      PG           S+I YAV+ENSFL GL+PL
Sbjct: 643  LQHSLVPLSFKIPHQLSCAAWNKQK--VPGLIQNDTSEYAESYIPYAVVENSFLMGLNPL 700

Query: 867  ECYVHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSD 688
            EC+VHSV++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGNQLVQF Y +  
Sbjct: 701  ECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEH 760

Query: 687  KVTSTE--DEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXX 514
              T ++  +E +C          GG+PVGS++AC+ISEAAYSALD+P             
Sbjct: 761  TSTPSDGINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLK 814

Query: 513  XXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSE 334
                    K+   + V+LFLSKKL++  +G EYGA+ VK+HLEK+LFS+++S   IVFS 
Sbjct: 815  RVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSP 874

Query: 333  KN-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSS 157
            +N  +TH SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K  LP + + S+ 
Sbjct: 875  QNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSNG 934

Query: 156  H---CSMAGPETSCI---VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
                  M   ++ C    V  V+ ++ C   L  VRD+++PFLLG V+KG ++V+KVD
Sbjct: 935  RDCFVDMEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVKGLLDVKKVD 991


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  548 bits (1412), Expect = e-153
 Identities = 316/716 (44%), Positives = 430/716 (60%), Gaps = 24/716 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPL C P RGDFDGDCL  Y+PQS+DSRVEL E                 
Sbjct: 429  VLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGR-- 486

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + + Q  + + HL             V ED   L+  
Sbjct: 487  ---------------------NLLSLSQDSLSAAHL-------------VMEDGVLLNLF 512

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +  +SPAI+KAP     +WTGKQL SML+P  FN+ FP+N          
Sbjct: 513  QMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELI 572

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 SAWL+D D +++S+LV++  GK LD L++AQE+L EW+SMRG SVSLSDIYLSS+
Sbjct: 573  SSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSD 632

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDIDNRLC 1177
            S SR NM++EV  GL  A Q    K  L++    +N L  S +  N +   V D+ +   
Sbjct: 633  SISRKNMIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQNGVVPDVQSLWY 688

Query: 1176 D------LTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLG 1015
            +      L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+LLKLV Q LCLG
Sbjct: 689  ERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLG 748

Query: 1014 LQHSSAPLSFRVPSMLSCSARNHSDFDTPG-----------SHILYAVIENSFLSGLDPL 868
            LQHS  PLSF++P  LSC+A N      PG           S+I YAV+ENSFL GL+PL
Sbjct: 749  LQHSLVPLSFKIPHQLSCAAWNKQK--VPGLIQNDTSEYAESYIPYAVVENSFLMGLNPL 806

Query: 867  ECYVHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSD 688
            EC+VHSV++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGNQLVQF Y +  
Sbjct: 807  ECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEH 866

Query: 687  KVTSTE--DEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXX 514
              T ++  +E +C          GG+PVGS++AC+ISEAAYSALD+P             
Sbjct: 867  TSTPSDGINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLK 920

Query: 513  XXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSE 334
                    K+   + V+LFLSKKL++  +G EYGA+ VK+HLEK+LFS+++S   IVFS 
Sbjct: 921  RVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSP 980

Query: 333  KN-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSS 157
            +N  +TH SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K  LP + + S  
Sbjct: 981  QNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKD 1040

Query: 156  -HCSMAGPETSCI---VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
                M   ++ C    V  V+ ++ C   L  VRD+++PFLLG V+KG ++V+KVD
Sbjct: 1041 CFVDMEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVKGLLDVKKVD 1095


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
            vinifera]
          Length = 1460

 Score =  548 bits (1412), Expect = e-153
 Identities = 316/718 (44%), Positives = 431/718 (60%), Gaps = 26/718 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPL C P RGDFDGDCL  Y+PQS+DSRVEL E                 
Sbjct: 429  VLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGR-- 486

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + + Q  + + HL             V ED   L+  
Sbjct: 487  ---------------------NLLSLSQDSLSAAHL-------------VMEDGVLLNLF 512

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +  +SPAI+KAP     +WTGKQL SML+P  FN+ FP+N          
Sbjct: 513  QMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELI 572

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 SAWL+D D +++S+LV++  GK LD L++AQE+L EW+SMRG SVSLSDIYLSS+
Sbjct: 573  SSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSD 632

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDIDNRLC 1177
            S SR NM++EV  GL  A Q    K  L++    +N L  S +  N +   V D+ +   
Sbjct: 633  SISRKNMIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQNGVVPDVQSLWY 688

Query: 1176 D------LTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLG 1015
            +      L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+LLKLV Q LCLG
Sbjct: 689  ERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLG 748

Query: 1014 LQHSSAPLSFRVPSMLSCSARNHSDFDTPG-----------SHILYAVIENSFLSGLDPL 868
            LQHS  PLSF++P  LSC+A N      PG           S+I YAV+ENSFL GL+PL
Sbjct: 749  LQHSLVPLSFKIPHQLSCAAWNKQK--VPGLIQNDTSEYAESYIPYAVVENSFLMGLNPL 806

Query: 867  ECYVHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSD 688
            EC+VHSV++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGNQLVQF Y +  
Sbjct: 807  ECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEH 866

Query: 687  KVTSTE--DEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXX 514
              T ++  +E +C          GG+PVGS++AC+ISEAAYSALD+P             
Sbjct: 867  TSTPSDGINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLK 920

Query: 513  XXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSE 334
                    K+   + V+LFLSKKL++  +G EYGA+ VK+HLEK+LFS+++S   IVFS 
Sbjct: 921  RVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSP 980

Query: 333  KN-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSS 157
            +N  +TH SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K  LP + + S+ 
Sbjct: 981  QNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSNG 1040

Query: 156  H---CSMAGPETSCI---VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
                  M   ++ C    V  V+ ++ C   L  VRD+++PFLLG V+KG ++V+KVD
Sbjct: 1041 RDCFVDMEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVKGLLDVKKVD 1097


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  528 bits (1359), Expect = e-146
 Identities = 301/715 (42%), Positives = 429/715 (60%), Gaps = 23/715 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPLIC P RGDFDGDCL  YVPQSI +RVEL E                 
Sbjct: 443  VLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARVELIEL---------------- 486

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                              V LN+  I      +L      ++  A    V+ED   L+  
Sbjct: 487  ------------------VSLNRQLINGQSGRNLLSLSHDSLTAAYL--VKEDGVLLNLF 526

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +H   PAIVKAP  + S+WTGKQLLSML P +F++DF  N          
Sbjct: 527  QMQQLEMFCPNHSPFPAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIRNGELI 586

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S WL+D D +++ +L+++Y GK LD L++AQE+L EW+SMRG SVSLSD+YLSS+
Sbjct: 587  SSSEGSTWLRDADGNLFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSD 646

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            S S+ NM++E+  GLQE  Q    K  +++    + L+   E+  +    +V+ +     
Sbjct: 647  SNSQKNMMDEIFCGLQEIEQTCNFKQLMVDSN-HDFLVGHDEEVDSFMALDVEQMCYEKQ 705

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            R   L++ ++ +++ VFRD+Q L+Y YA+K+NS+L M ++GSKG+LLKLV  SLCLGLQH
Sbjct: 706  RSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQH 765

Query: 1005 SSAPLSFRVPSMLSCSARNHSDF-----------DTPGSHILYAVIENSFLSGLDPLECY 859
            S  PLSFR P  LSC+A N+              ++  ++I YAV+E+SF++GL+PLE +
Sbjct: 766  SLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESF 825

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVT 679
            VHSV++RDSSF +NA++PGTL R++MF+MRDLY AYDGTVRN+YG+ +VQFCY +    +
Sbjct: 826  VHSVTSRDSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDAS 885

Query: 678  STEDEISCQISTGS--ERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXX 505
            S        IS  S      GG+PVGSL+AC+ISEAAYSALD+P                
Sbjct: 886  SPTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNLKRVV 945

Query: 504  XXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EKN 328
                 ++   Q +TLFLS KL R  +GSEY A+ VK+HLE++ FS++++  +I+FS +  
Sbjct: 946  ECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSIIFSPQMY 1005

Query: 327  CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSS---- 160
             + H +PW+CHFH+ K+ M+++ L V SI  +L  +C +  +  K  LP M + S+    
Sbjct: 1006 RENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDMQITSNGRAC 1065

Query: 159  SHCSMAG-PETSCI-VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            SH  M    +T CI V  V+  +     L  +RD+++P+LL  VIKGF E++KVD
Sbjct: 1066 SHIDMPNEDDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVD 1120


>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nelumbo nucifera]
          Length = 1373

 Score =  525 bits (1353), Expect = e-146
 Identities = 306/726 (42%), Positives = 419/726 (57%), Gaps = 34/726 (4%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPL C PL GDFDGDCL  ++ Q+ID RVELRE                 
Sbjct: 322  VLPINSVVSINPLCCSPLSGDFDGDCLHGFIAQAIDCRVELRELVALSKQLVNGQNGQ-- 379

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             V ++   L   
Sbjct: 380  ---------------------NLLSLSHDSLSAAHL-------------VTQNGVFLDMF 405

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+ML  H  + P I+KAP  +  +WTGKQL  ML+PQ F++ FP +          
Sbjct: 406  QMQQLKMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELL 465

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+    SI+S LV +Y  + +D LF+AQ++  EWISM GFSVSLSDIY++S+
Sbjct: 466  CSFGESSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASD 525

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDD---IDN 1186
            S SR NM++EV  GLQE  +    K  +++   +  L  D E+T     + VD     + 
Sbjct: 526  SHSRKNMLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLRYDGENTKT-NGYRVDQECPSNQ 584

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
                L ++++ ++++ F D+Q L++ YAS +NS+LAM+++GSKG+LLK+V Q LCLGLQH
Sbjct: 585  ESVVLCQVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQH 644

Query: 1005 SSAPLSFRVPSMLSCSARNHS-DFDTPG---SHILYAVIENSFLSGLDPLECYVHSVSNR 838
            +S PLSF++P  LSC++ N+    D P    S+I YAV+ENSFL GL+PLEC+VHSVS R
Sbjct: 645  ASVPLSFQIPCKLSCASWNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTR 704

Query: 837  DSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVTSTEDEIS 658
            D+SFGENA++PGTL RK+MFYMRDLY+AYDGTVR AYGNQLVQF YG   K  S +D   
Sbjct: 705  DNSFGENADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCF-KGDSVQD--P 761

Query: 657  CQISTGSERR---CGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXK 487
            C +  GS       GG+PVGSL+ACSISEAAYSALD+P                      
Sbjct: 762  CGLFGGSPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKN 821

Query: 486  TAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EKNCQTHLS 310
             +  Q  +LFLSKKL R   G EYGA  VK+HLE+V FS+V+S   ++FS +++ Q   S
Sbjct: 822  ASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFSPQRHSQMSAS 881

Query: 309  PWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSK--------------------QKF 190
            PW+CHFH+ KE M+++GLN+ SI  AL++N     +K                     K 
Sbjct: 882  PWVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKI 941

Query: 189  ELP---VMHLDSSSHCSMAGPETSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFV 19
            +LP   ++  D +         T CIV  V+I +  S  L  VRD+++PFL  TVIKGF+
Sbjct: 942  KLPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVPFLSRTVIKGFL 1001

Query: 18   EVEKVD 1
            E + VD
Sbjct: 1002 EFKSVD 1007


>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nelumbo nucifera]
          Length = 1489

 Score =  525 bits (1353), Expect = e-146
 Identities = 306/726 (42%), Positives = 419/726 (57%), Gaps = 34/726 (4%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPL C PL GDFDGDCL  ++ Q+ID RVELRE                 
Sbjct: 444  VLPINSVVSINPLCCSPLSGDFDGDCLHGFIAQAIDCRVELRELVALSKQLVNGQNGQ-- 501

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             V ++   L   
Sbjct: 502  ---------------------NLLSLSHDSLSAAHL-------------VTQNGVFLDMF 527

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+ML  H  + P I+KAP  +  +WTGKQL  ML+PQ F++ FP +          
Sbjct: 528  QMQQLKMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELL 587

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+    SI+S LV +Y  + +D LF+AQ++  EWISM GFSVSLSDIY++S+
Sbjct: 588  CSFGESSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASD 647

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDD---IDN 1186
            S SR NM++EV  GLQE  +    K  +++   +  L  D E+T     + VD     + 
Sbjct: 648  SHSRKNMLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLRYDGENTKT-NGYRVDQECPSNQ 706

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
                L ++++ ++++ F D+Q L++ YAS +NS+LAM+++GSKG+LLK+V Q LCLGLQH
Sbjct: 707  ESVVLCQVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQH 766

Query: 1005 SSAPLSFRVPSMLSCSARNHS-DFDTPG---SHILYAVIENSFLSGLDPLECYVHSVSNR 838
            +S PLSF++P  LSC++ N+    D P    S+I YAV+ENSFL GL+PLEC+VHSVS R
Sbjct: 767  ASVPLSFQIPCKLSCASWNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTR 826

Query: 837  DSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVTSTEDEIS 658
            D+SFGENA++PGTL RK+MFYMRDLY+AYDGTVR AYGNQLVQF YG   K  S +D   
Sbjct: 827  DNSFGENADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCF-KGDSVQD--P 883

Query: 657  CQISTGSERR---CGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXK 487
            C +  GS       GG+PVGSL+ACSISEAAYSALD+P                      
Sbjct: 884  CGLFGGSPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKN 943

Query: 486  TAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EKNCQTHLS 310
             +  Q  +LFLSKKL R   G EYGA  VK+HLE+V FS+V+S   ++FS +++ Q   S
Sbjct: 944  ASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFSPQRHSQMSAS 1003

Query: 309  PWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSK--------------------QKF 190
            PW+CHFH+ KE M+++GLN+ SI  AL++N     +K                     K 
Sbjct: 1004 PWVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKI 1063

Query: 189  ELP---VMHLDSSSHCSMAGPETSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFV 19
            +LP   ++  D +         T CIV  V+I +  S  L  VRD+++PFL  TVIKGF+
Sbjct: 1064 KLPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVPFLSRTVIKGFL 1123

Query: 18   EVEKVD 1
            E + VD
Sbjct: 1124 EFKSVD 1129


>ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nicotiana tomentosiformis]
          Length = 1211

 Score =  523 bits (1348), Expect = e-145
 Identities = 301/711 (42%), Positives = 415/711 (58%), Gaps = 19/711 (2%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E                 
Sbjct: 175  ILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQ-- 232

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             V E    L + 
Sbjct: 233  ---------------------NLLSLSHDSLTAAHL-------------VLEGGVFLDRF 258

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+M   H    PAIV+AP+  RS WTGKQL S+ +P D + DFP N          
Sbjct: 259  QVQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFSLFLPSDLDCDFPSNGVCISDGEIV 318

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D  ++++ +LV+++GG TLD+L++AQ +L EW+SMRG SVSLSD+Y+SS+
Sbjct: 319  TSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSD 378

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDID---N 1186
              SR NM++EV  GLQEA +    +  L++R   + L    E +     F ++ +     
Sbjct: 379  PYSRENMIDEVFCGLQEAERLSYIQ-LLMSRYNHDFLAGSLEVSQKAMGFNLEFMSIMQQ 437

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            +   L++ ++ +++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKLV  S+CLGLQ 
Sbjct: 438  KSASLSQASVSSFKHVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQ 497

Query: 1005 SSAPLSFRVPSMLSCSARN-----------HSDFDTPGSHILYAVIENSFLSGLDPLECY 859
            S  PLSFR+P  LSC A N           H+  + PG +I  AV+ENSFL+GL+PLEC+
Sbjct: 498  SLVPLSFRMPRRLSCDAWNNHKAHLPFEKAHNVPERPGPYIPCAVVENSFLAGLNPLECF 557

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVT 679
            VHS++ RDSSF  +A++ GTL RK+MF+MRDLY  YDGTVRNAYGNQ+VQF Y  +D+++
Sbjct: 558  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYSGYDGTVRNAYGNQIVQFSYYSADQIS 617

Query: 678  STEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXX 499
            ST +  S  I        GG PVGSLAAC+ISEAAYSALD P                  
Sbjct: 618  STYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPVGALEPSPLLNLKKILEA 669

Query: 498  XXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSEKNCQ- 322
                 +  +  TLFLS++L R  +G EYGAI VK HLE++L S+++S   I FS + C+ 
Sbjct: 670  GVKSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTVMICFSPETCKS 729

Query: 321  THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLD----SSSH 154
            TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +H+     S++ 
Sbjct: 730  THSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHITCKDCSAAE 789

Query: 153  CSMAGPETSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
               A  +    V  V+  +   + L  +RD+++PFLL TVIKGF   +KVD
Sbjct: 790  MQKANSKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVD 840


>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1447

 Score =  523 bits (1348), Expect = e-145
 Identities = 301/711 (42%), Positives = 415/711 (58%), Gaps = 19/711 (2%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E                 
Sbjct: 411  ILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQ-- 468

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             V E    L + 
Sbjct: 469  ---------------------NLLSLSHDSLTAAHL-------------VLEGGVFLDRF 494

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+M   H    PAIV+AP+  RS WTGKQL S+ +P D + DFP N          
Sbjct: 495  QVQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFSLFLPSDLDCDFPSNGVCISDGEIV 554

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D  ++++ +LV+++GG TLD+L++AQ +L EW+SMRG SVSLSD+Y+SS+
Sbjct: 555  TSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSD 614

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDID---N 1186
              SR NM++EV  GLQEA +    +  L++R   + L    E +     F ++ +     
Sbjct: 615  PYSRENMIDEVFCGLQEAERLSYIQ-LLMSRYNHDFLAGSLEVSQKAMGFNLEFMSIMQQ 673

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            +   L++ ++ +++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKLV  S+CLGLQ 
Sbjct: 674  KSASLSQASVSSFKHVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQ 733

Query: 1005 SSAPLSFRVPSMLSCSARN-----------HSDFDTPGSHILYAVIENSFLSGLDPLECY 859
            S  PLSFR+P  LSC A N           H+  + PG +I  AV+ENSFL+GL+PLEC+
Sbjct: 734  SLVPLSFRMPRRLSCDAWNNHKAHLPFEKAHNVPERPGPYIPCAVVENSFLAGLNPLECF 793

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVT 679
            VHS++ RDSSF  +A++ GTL RK+MF+MRDLY  YDGTVRNAYGNQ+VQF Y  +D+++
Sbjct: 794  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYSGYDGTVRNAYGNQIVQFSYYSADQIS 853

Query: 678  STEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXX 499
            ST +  S  I        GG PVGSLAAC+ISEAAYSALD P                  
Sbjct: 854  STYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPVGALEPSPLLNLKKILEA 905

Query: 498  XXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSEKNCQ- 322
                 +  +  TLFLS++L R  +G EYGAI VK HLE++L S+++S   I FS + C+ 
Sbjct: 906  GVKSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTVMICFSPETCKS 965

Query: 321  THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLD----SSSH 154
            TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +H+     S++ 
Sbjct: 966  THSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHITCKDCSAAE 1025

Query: 153  CSMAGPETSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
               A  +    V  V+  +   + L  +RD+++PFLL TVIKGF   +KVD
Sbjct: 1026 MQKANSKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVD 1076


>ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324654|ref|XP_010053344.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324662|ref|XP_010053345.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324668|ref|XP_010053346.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324674|ref|XP_010053347.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324680|ref|XP_010053348.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324687|ref|XP_010053349.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|629112658|gb|KCW77618.1| hypothetical protein
            EUGRSUZ_D01929 [Eucalyptus grandis]
          Length = 1473

 Score =  521 bits (1343), Expect = e-145
 Identities = 299/722 (41%), Positives = 433/722 (59%), Gaps = 30/722 (4%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  S  S+NPL C PLRGDFDGDC+  Y+PQS+D+RVELRE                 
Sbjct: 439  VLPIASALSINPLCCSPLRGDFDGDCIHGYIPQSVDARVELRELVGVDRQLYNGQSGR-- 496

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + + Q  +++ HL             + ED  C ++ 
Sbjct: 497  ---------------------NLLSLGQDSLVAAHL-------------ILEDSVCFNRF 522

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             I+QL+ML  +    P     P+ +  MWTGKQL  ML+P+ F + F  +          
Sbjct: 523  DIQQLKMLCPNDLLPPV----PSVEGGMWTGKQLFQMLLPRGFEW-FSSSNDIGISNGEI 577

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 SAWL+D DD+++  L+     + L+IL +AQE+L EW+SMRGFSVSLSD+YL+S+
Sbjct: 578  VFSEGSAWLRDADDNLFQRLITFCQSRVLNILHAAQEVLCEWLSMRGFSVSLSDLYLASD 637

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDIDNRLC 1177
            S SR NM+EE+S GLQEA +    K F+++     + L  + +  N   F  +    RLC
Sbjct: 638  SFSRENMIEEISCGLQEADETCNIKQFMVDSS--RDFLAGNGEEINAMAFNSE----RLC 691

Query: 1176 -------DLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCL 1018
                    L++ ++ A++ VFRD+Q L Y YASK+NSM++M +SGSKG+LLK+   S+C+
Sbjct: 692  YEKQKSPALSQASVDAFKRVFRDIQSLAYKYASKDNSMISMFKSGSKGNLLKIAQHSMCV 751

Query: 1017 GLQHSSAPLSFRVPSMLSCSARNHS---------DFDTPGSHILYAVIENSFLSGLDPLE 865
            GLQHS  PLSF +P  LS ++ N           DF  P S I +AV++NSFLSGL+PLE
Sbjct: 752  GLQHSLVPLSFDIPHHLSNASYNSHKGRNIDRTHDFPFPQSFIPFAVVKNSFLSGLNPLE 811

Query: 864  CYVHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGV--- 694
            C+VHSV+NR SSF ENAE+PGTL RK+MF+MRDLY++YDGTVR+AYGNQL++F YG+   
Sbjct: 812  CFVHSVTNRASSFSENAEVPGTLHRKLMFFMRDLYVSYDGTVRSAYGNQLIEFSYGIEKQ 871

Query: 693  SDKVTSTEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXX 514
            S    S +D +SC+ +   E   GG+PVGS++AC+ISEAAYSALD+P             
Sbjct: 872  SSTPCSRKDSLSCENAKSGE-GMGGQPVGSMSACAISEAAYSALDQPISLLEMSPLLNLK 930

Query: 513  XXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSE 334
                    K+   Q ++LFLSK+L +  +G EYGA+AVK HLE++ FS+++S T I+FS 
Sbjct: 931  NVLESGTKKSNSCQTMSLFLSKQLAKHRHGLEYGALAVKDHLERMFFSDIVSTTMIIFSP 990

Query: 333  KNCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSH 154
            +N   +LSPW+CHFHI K+ + ++GL + S+  +L++ C + L + + +LP + + + + 
Sbjct: 991  ENYNQNLSPWVCHFHIRKDIITRRGLILHSVIGSLKRRCHAFLKELRVDLPPLQI-TIND 1049

Query: 153  CSMAGPETS------CIVGSVDIEEG---CSNP--LAGVRDVMMPFLLGTVIKGFVEVEK 7
            CS+ G E        CI  ++ +EE     + P  L  +++ ++P LL TVIKGF+E++K
Sbjct: 1050 CSLTGEEREDAANIFCITLTM-VEESKKVATQPTLLKKLQEHVIPCLLETVIKGFMEIKK 1108

Query: 6    VD 1
            VD
Sbjct: 1109 VD 1110


>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Prunus mume]
          Length = 1452

 Score =  521 bits (1342), Expect = e-145
 Identities = 308/714 (43%), Positives = 426/714 (59%), Gaps = 22/714 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            ILP  SV S+NPL C P RGDFDGDCL  Y+PQS D+RVELRE                 
Sbjct: 423  ILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVALDKQLINGQSGR-- 480

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + + Q  + + HL             + ED   L+  
Sbjct: 481  ---------------------NLLSLSQDSLTAAHL-------------IMEDGTLLNLL 506

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM       SPA++KAP+     WTGKQ+ SML+P DF++DF  +          
Sbjct: 507  EMQQLEMFCWDVLPSPAVIKAPSLNSHAWTGKQVFSMLLPSDFDYDF-ASDGVYIKNGEL 565

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+DT  +++ +LV ++ G+ LD LF+AQE+L EW+SMRG SVSL+D+YL+S+
Sbjct: 566  LSSEGSSWLRDTGGNLFQSLVNHFQGQVLDFLFAAQEVLCEWLSMRGLSVSLADLYLASD 625

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            S SR N++EE+S GLQEA QA   K  L++  C E L+  +E+  +  TF+ +       
Sbjct: 626  SGSRNNLMEEISCGLQEAEQACIFKQLLVDN-CQEFLMGCAEENRSPLTFDAEYFCHEKQ 684

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            +   L+++   A++ +FRD+Q L + YA K+NS+L M+++GSKG+L KLV  S+CLGLQH
Sbjct: 685  KSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKLVQHSMCLGLQH 744

Query: 1005 SSAPLSFRVPSMLSCSARNHSD-----------FDTPGSHILYAVIENSFLSGLDPLECY 859
            S  PLSFR+P+ LSC+A N+             ++   S+I  AV+E+SFL+GL+PLEC+
Sbjct: 745  SLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIPSAVVESSFLTGLNPLECF 804

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVS-DKV 682
            VHSV++RDSSF  NA++PGTL RK+MF MRDLY AYDGTVRNAYGNQLVQF Y +  DK 
Sbjct: 805  VHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRNAYGNQLVQFSYDIDMDKS 864

Query: 681  TSTEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXX 502
             ST    S   ST +    GG+PVGSL+AC++SEAAYSALD+P                 
Sbjct: 865  DST--STSYAKSTTACDGIGGQPVGSLSACALSEAAYSALDQPVSLLETSPLLNLKNILE 922

Query: 501  XXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVF-SEKNC 325
                K++  Q ++LFLS+KL R  +G EYGA+ VK+HL  + FS+++S   I+F S+ N 
Sbjct: 923  CGSKKSSAKQTMSLFLSEKLGRRRHGFEYGALEVKNHLVGLTFSDIVSTVMIIFSSQNNS 982

Query: 324  QTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHCSM 145
            Q   SPW+ HFHI KE ++K+ L V S+  +L   C S   + K  L  + L +S  CS 
Sbjct: 983  QKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKVVLRSL-LITSKGCSA 1041

Query: 144  A-----GPETSCI-VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            A       +T CI V   +  +  S  L   RD+++PFLLGTV+KGF+EV+KVD
Sbjct: 1042 AQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVKKVD 1095


>ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nicotiana sylvestris]
          Length = 1254

 Score =  520 bits (1340), Expect = e-144
 Identities = 303/712 (42%), Positives = 418/712 (58%), Gaps = 20/712 (2%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E                 
Sbjct: 218  ILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQ-- 275

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             + E+   L + 
Sbjct: 276  ---------------------NLLSLSHDSLTAAHL-------------ILEEGVFLDRF 301

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+M   H    PAIV+AP+  RS WTGKQL  + +P D + DFP N          
Sbjct: 302  QMQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFGLFLPSDLDCDFPSNGVCISDGEIV 361

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D  ++++ +LV+++GG TLD+L++AQ +L EW+SMRG SVSLSD+Y+SS+
Sbjct: 362  TSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSD 421

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDIDNRL- 1180
              SR NM++EV  GLQEA +    +  L+ R   + L    E +     F+++ +   L 
Sbjct: 422  PYSRENMIDEVFCGLQEAERLSYVQ-LLMTRYNHDFLAGSLEVSQKAMGFDLEFMSIMLQ 480

Query: 1179 --CDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
                L++ ++ A++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKLV  S+CLGLQ 
Sbjct: 481  KSASLSQASVTAFKQVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQ 540

Query: 1005 SSAPLSFRVPSMLSCSARN-----------HSDFDTPGSHILYAVIENSFLSGLDPLECY 859
            S  PLSFR+P  LSC A N           H+  + PGS+I  AV+ENSFL+GL+PLEC+
Sbjct: 541  SLVPLSFRMPRQLSCDAWNNHKAHLPFEKAHNVPERPGSYIPCAVVENSFLAGLNPLECF 600

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVT 679
            VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQF Y  +D++ 
Sbjct: 601  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYIGYDGTVRNAYGNQIVQFSYYNTDQIA 660

Query: 678  STEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXX 499
            ST +  S  I        GG PVGSLAAC+ISEAAYSALD P                  
Sbjct: 661  STYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPIGALEPSPLLNLKKILEA 712

Query: 498  XXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSEKNCQ- 322
                 +  +  +LFLSK+L R  +G EYGA+ VK HLE++L S+++S   I FS    + 
Sbjct: 713  GVKSNSSEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTVMICFSPGTYKS 772

Query: 321  THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHCSMA 142
            TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +H+ +   CS+A
Sbjct: 773  THSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHI-TCKDCSVA 831

Query: 141  GPETS----CI-VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
              + +    CI V  V+  +   + L  +RD+++PFLL TVIKGF   +KVD
Sbjct: 832  EMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVD 883


>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Nicotiana sylvestris]
            gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Nicotiana
            sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Nicotiana sylvestris]
          Length = 1447

 Score =  520 bits (1340), Expect = e-144
 Identities = 303/712 (42%), Positives = 418/712 (58%), Gaps = 20/712 (2%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E                 
Sbjct: 411  ILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQ-- 468

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             + E+   L + 
Sbjct: 469  ---------------------NLLSLSHDSLTAAHL-------------ILEEGVFLDRF 494

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+M   H    PAIV+AP+  RS WTGKQL  + +P D + DFP N          
Sbjct: 495  QMQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFGLFLPSDLDCDFPSNGVCISDGEIV 554

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D  ++++ +LV+++GG TLD+L++AQ +L EW+SMRG SVSLSD+Y+SS+
Sbjct: 555  TSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSD 614

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDIDNRL- 1180
              SR NM++EV  GLQEA +    +  L+ R   + L    E +     F+++ +   L 
Sbjct: 615  PYSRENMIDEVFCGLQEAERLSYVQ-LLMTRYNHDFLAGSLEVSQKAMGFDLEFMSIMLQ 673

Query: 1179 --CDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
                L++ ++ A++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKLV  S+CLGLQ 
Sbjct: 674  KSASLSQASVTAFKQVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQ 733

Query: 1005 SSAPLSFRVPSMLSCSARN-----------HSDFDTPGSHILYAVIENSFLSGLDPLECY 859
            S  PLSFR+P  LSC A N           H+  + PGS+I  AV+ENSFL+GL+PLEC+
Sbjct: 734  SLVPLSFRMPRQLSCDAWNNHKAHLPFEKAHNVPERPGSYIPCAVVENSFLAGLNPLECF 793

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVT 679
            VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQF Y  +D++ 
Sbjct: 794  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYIGYDGTVRNAYGNQIVQFSYYNTDQIA 853

Query: 678  STEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXX 499
            ST +  S  I        GG PVGSLAAC+ISEAAYSALD P                  
Sbjct: 854  STYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPIGALEPSPLLNLKKILEA 905

Query: 498  XXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSEKNCQ- 322
                 +  +  +LFLSK+L R  +G EYGA+ VK HLE++L S+++S   I FS    + 
Sbjct: 906  GVKSNSSEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTVMICFSPGTYKS 965

Query: 321  THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHCSMA 142
            TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +H+ +   CS+A
Sbjct: 966  THSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHI-TCKDCSVA 1024

Query: 141  GPETS----CI-VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
              + +    CI V  V+  +   + L  +RD+++PFLL TVIKGF   +KVD
Sbjct: 1025 EMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVD 1076


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  513 bits (1322), Expect = e-142
 Identities = 299/706 (42%), Positives = 423/706 (59%), Gaps = 14/706 (1%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV ++NPLIC P RGDFDGDCL  YVPQS+D+RVELRE                 
Sbjct: 435  VLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINVQNGR-- 492

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N +   Q  +++ HL             V ED   L  +
Sbjct: 493  ---------------------NLLSFSQDSLVAAHL-------------VMEDGVLLSLQ 518

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+M   H   SPA+ KAP+     WTGKQL+SML+P+ F+ + P +          
Sbjct: 519  QMQQLQMFCPHQLFSPAVRKAPSLNGCAWTGKQLISMLLPRGFDHECPSSDVYIRDGELI 578

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                   WL+DTD +++ +L++    + LD L+ AQE+L EW+SMRG SVSLSD+YL  +
Sbjct: 579  SSEGSF-WLRDTDGNLFQSLIKQCQDQVLDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPD 637

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            S SR NM++EV  GLQ+A      K F+++  C + L    ED      F+V+ +     
Sbjct: 638  SDSRENMMDEVLFGLQDAKGTCNMKQFMVDS-CRDFLASIDEDEQYSVNFDVEHLCHEKQ 696

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            R   L++ ++ A++ VFRD+Q L Y YASK+N+++AM +SGSKG+LLK+V  S+CLGLQH
Sbjct: 697  RSAALSQASVDAFKHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQH 756

Query: 1005 SSAPLSFRVPSMLSCSARN----HSDFDTPGSHILYAVIENSFLSGLDPLECYVHSVSNR 838
            S  PLSFR+P  LSC A N     +  +   S+I  AV+E  FL+GL+PLEC+VHSV++R
Sbjct: 757  SLVPLSFRMPLQLSCDAWNKQKAENAVECARSYIPSAVVEGCFLTGLNPLECFVHSVTSR 816

Query: 837  DSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVTSTEDEIS 658
            +SSF +NA++PGTL R++MF+MRD++ AYDG+VR+AYGNQL+QF Y + D+  S E   +
Sbjct: 817  ESSFSDNADLPGTLTRRLMFFMRDVHAAYDGSVRSAYGNQLIQFSYNI-DEGRSAETYGT 875

Query: 657  CQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAE 478
             +I    +    G+PVGSLAACSISEAAYSALD+P                     K+  
Sbjct: 876  AKIVDNYD-GMAGKPVGSLAACSISEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNA 934

Query: 477  VQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVF-SEKNCQTHLSPWI 301
             ++++LFLS+KL R  +G EYGA+ V+ HLE++LFS+++S + I+F S+   +T  SPW+
Sbjct: 935  HKSMSLFLSEKLGRRRHGFEYGALKVQDHLERLLFSDIVSVSRIIFSSQSESKTCFSPWV 994

Query: 300  CHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHCSMAG-----P 136
            CHFH+ KE M+K+ LNV SI + L   C SN +     LP + +   S CS+A       
Sbjct: 995  CHFHVYKEIMKKRNLNVDSIINILNGRCKSNTN-----LPNVQISCKS-CSIADNHREKE 1048

Query: 135  ETSCI-VGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            ET CI V  V+  +  S  LA ++D+M+PFLL TV+KG +E+ KVD
Sbjct: 1049 ETLCITVTIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEINKVD 1094


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  510 bits (1314), Expect = e-141
 Identities = 297/711 (41%), Positives = 414/711 (58%), Gaps = 19/711 (2%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            ILP  SV S+NPL+C P RGDFDGDCL  Y+PQSIDSR+EL E                 
Sbjct: 202  ILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQQLLDGQNGQ-- 259

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             + E    L + 
Sbjct: 260  ---------------------NLLSLSHDSLTAAHL-------------ILEPGVFLDRF 285

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+M         AIVKAP      WTGKQL S+L+P D  + FP N          
Sbjct: 286  QMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIV 345

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D  D+++ +LV+++GG TLD+L++AQ +L EW+SMRG SVSLSD+Y+SS+
Sbjct: 346  TSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSD 405

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLI--NRMCMENLLRDSEDTHNCETFEVDDIDNR 1183
            S SR NM++EV  GLQEA +    +  +I  N+  +   L +S+++   +   +  +  +
Sbjct: 406  SYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSMGFDFEFMSIMQQK 465

Query: 1182 LCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHS 1003
               L++ +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV  S+CLGLQ S
Sbjct: 466  SASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQS 525

Query: 1002 SAPLSFRVPSMLSCSARN-----------HSDFDTPGSHILYAVIENSFLSGLDPLECYV 856
              P+SFR+P  LSC A N           H   + PGS+I  AV+++SFL+GL+PLEC+V
Sbjct: 526  LVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFV 585

Query: 855  HSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVTS 676
            HS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQF Y  ++K+ S
Sbjct: 586  HSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIAS 645

Query: 675  TEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXX 496
            T+   +           GG PVGSLAAC+ISEAAYSALD+P                   
Sbjct: 646  TKG--TGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESG 703

Query: 495  XXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EKNCQT 319
                +  +  ++FLSK+L R  +G EYGA+ VK HLE++L SEV+S   I FS E    T
Sbjct: 704  AGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKST 763

Query: 318  HLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHCSM-- 145
            H  PW+CHFHI KE ++ + L + SI  AL     +  +K   +LP +H+ +   CS+  
Sbjct: 764  HNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHI-TCKDCSVAE 822

Query: 144  AGPETSCIVGSVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            A  E S I  +V + E   +P   L  +RDV++PFLL TVIKGF   +KVD
Sbjct: 823  ARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVD 873


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  510 bits (1314), Expect = e-141
 Identities = 297/711 (41%), Positives = 414/711 (58%), Gaps = 19/711 (2%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            ILP  SV S+NPL+C P RGDFDGDCL  Y+PQSIDSR+EL E                 
Sbjct: 415  ILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQQLLDGQNGQ-- 472

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             + E    L + 
Sbjct: 473  ---------------------NLLSLSHDSLTAAHL-------------ILEPGVFLDRF 498

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+M         AIVKAP      WTGKQL S+L+P D  + FP N          
Sbjct: 499  QMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIV 558

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D  D+++ +LV+++GG TLD+L++AQ +L EW+SMRG SVSLSD+Y+SS+
Sbjct: 559  TSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSD 618

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLI--NRMCMENLLRDSEDTHNCETFEVDDIDNR 1183
            S SR NM++EV  GLQEA +    +  +I  N+  +   L +S+++   +   +  +  +
Sbjct: 619  SYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSMGFDFEFMSIMQQK 678

Query: 1182 LCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHS 1003
               L++ +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV  S+CLGLQ S
Sbjct: 679  SASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQS 738

Query: 1002 SAPLSFRVPSMLSCSARN-----------HSDFDTPGSHILYAVIENSFLSGLDPLECYV 856
              P+SFR+P  LSC A N           H   + PGS+I  AV+++SFL+GL+PLEC+V
Sbjct: 739  LVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFV 798

Query: 855  HSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVTS 676
            HS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQF Y  ++K+ S
Sbjct: 799  HSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIAS 858

Query: 675  TEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXX 496
            T+   +           GG PVGSLAAC+ISEAAYSALD+P                   
Sbjct: 859  TKG--TGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESG 916

Query: 495  XXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EKNCQT 319
                +  +  ++FLSK+L R  +G EYGA+ VK HLE++L SEV+S   I FS E    T
Sbjct: 917  AGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKST 976

Query: 318  HLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHCSM-- 145
            H  PW+CHFHI KE ++ + L + SI  AL     +  +K   +LP +H+ +   CS+  
Sbjct: 977  HNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHI-TCKDCSVAE 1035

Query: 144  AGPETSCIVGSVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            A  E S I  +V + E   +P   L  +RDV++PFLL TVIKGF   +KVD
Sbjct: 1036 ARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVD 1086


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  509 bits (1311), Expect = e-141
 Identities = 294/714 (41%), Positives = 423/714 (59%), Gaps = 22/714 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E                 
Sbjct: 443  VLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSL------------- 489

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                            D   +N    + L  LS        +VK       ED   L+  
Sbjct: 490  ----------------DRQLINGQSGRNLLSLSHDSLTAAYLVK-------EDGVLLNLF 526

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +H   PAIVKAP     +WTGKQL SML P +F++ F  +          
Sbjct: 527  QMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLI 586

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D D +++ +L+++Y GK LD L +AQE+L EW+SMRG SVSL D+YLS +
Sbjct: 587  CSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPD 646

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            + S+ NM++E+  GLQEA Q    K  +++  C + L  + E+T+     +V+ +     
Sbjct: 647  TDSQKNMMDEIFYGLQEAEQTCNFKQLMVDS-CQDFLAGNDEETNRFMVLDVEQMCYEKQ 705

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            R   L++ ++ +++ VFRD+Q L+Y YA+K+NS+  M ++GSKG+LLKLV  S+CLGLQH
Sbjct: 706  RSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQH 765

Query: 1005 SSAPLSFRVPSMLSCSARNHSDF--------DTPGS---HILYAVIENSFLSGLDPLECY 859
            S  PLSFR P  LSC+A N+           DT  S   +I YAV+E+SF+ GL+PLEC+
Sbjct: 766  SLVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECF 825

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSD--- 688
            VHSV+ RD+SF +NA++PGTL R++MF+MRDL  AYDGTVRNAYG+Q+VQFCY +     
Sbjct: 826  VHSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTF 885

Query: 687  KVTSTEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXX 508
              TS  D++  Q S+  +   GG+PVGSL+AC+ISEAAYSALD+P               
Sbjct: 886  SPTSCPDKLVSQGSSLPD-GIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRV 944

Query: 507  XXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EK 331
                  ++   Q ++LFLS KL R  +G EYGA+ VK+HLE+++F +++S  +I+FS + 
Sbjct: 945  LECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQM 1004

Query: 330  NCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHC 151
            + +   SPW+CHFH+ K+ + ++ L V SI  AL  +C +     K  LP M + S + C
Sbjct: 1005 SSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKA-C 1063

Query: 150  SMAGPE----TSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            S+   E    T CI  ++   +     L  ++D+++P LL  V+KGF E++KV+
Sbjct: 1064 SVIDMENEDDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVE 1117


>ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Gossypium raimondii]
          Length = 1340

 Score =  509 bits (1311), Expect = e-141
 Identities = 294/714 (41%), Positives = 423/714 (59%), Gaps = 22/714 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E                 
Sbjct: 302  VLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSL------------- 348

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                            D   +N    + L  LS        +VK       ED   L+  
Sbjct: 349  ----------------DRQLINGQSGRNLLSLSHDSLTAAYLVK-------EDGVLLNLF 385

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +H   PAIVKAP     +WTGKQL SML P +F++ F  +          
Sbjct: 386  QMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLI 445

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D D +++ +L+++Y GK LD L +AQE+L EW+SMRG SVSL D+YLS +
Sbjct: 446  CSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPD 505

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            + S+ NM++E+  GLQEA Q    K  +++  C + L  + E+T+     +V+ +     
Sbjct: 506  TDSQKNMMDEIFYGLQEAEQTCNFKQLMVDS-CQDFLAGNDEETNRFMVLDVEQMCYEKQ 564

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            R   L++ ++ +++ VFRD+Q L+Y YA+K+NS+  M ++GSKG+LLKLV  S+CLGLQH
Sbjct: 565  RSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQH 624

Query: 1005 SSAPLSFRVPSMLSCSARNHSDF--------DTPGS---HILYAVIENSFLSGLDPLECY 859
            S  PLSFR P  LSC+A N+           DT  S   +I YAV+E+SF+ GL+PLEC+
Sbjct: 625  SLVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECF 684

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSD--- 688
            VHSV+ RD+SF +NA++PGTL R++MF+MRDL  AYDGTVRNAYG+Q+VQFCY +     
Sbjct: 685  VHSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTF 744

Query: 687  KVTSTEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXX 508
              TS  D++  Q S+  +   GG+PVGSL+AC+ISEAAYSALD+P               
Sbjct: 745  SPTSCPDKLVSQGSSLPD-GIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRV 803

Query: 507  XXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EK 331
                  ++   Q ++LFLS KL R  +G EYGA+ VK+HLE+++F +++S  +I+FS + 
Sbjct: 804  LECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQM 863

Query: 330  NCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHC 151
            + +   SPW+CHFH+ K+ + ++ L V SI  AL  +C +     K  LP M + S + C
Sbjct: 864  SSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKA-C 922

Query: 150  SMAGPE----TSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            S+   E    T CI  ++   +     L  ++D+++P LL  V+KGF E++KV+
Sbjct: 923  SVIDMENEDDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVE 976


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  509 bits (1311), Expect = e-141
 Identities = 294/714 (41%), Positives = 423/714 (59%), Gaps = 22/714 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E                 
Sbjct: 440  VLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSL------------- 486

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                            D   +N    + L  LS        +VK       ED   L+  
Sbjct: 487  ----------------DRQLINGQSGRNLLSLSHDSLTAAYLVK-------EDGVLLNLF 523

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +H   PAIVKAP     +WTGKQL SML P +F++ F  +          
Sbjct: 524  QMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLI 583

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D D +++ +L+++Y GK LD L +AQE+L EW+SMRG SVSL D+YLS +
Sbjct: 584  CSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPD 643

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            + S+ NM++E+  GLQEA Q    K  +++  C + L  + E+T+     +V+ +     
Sbjct: 644  TDSQKNMMDEIFYGLQEAEQTCNFKQLMVDS-CQDFLAGNDEETNRFMVLDVEQMCYEKQ 702

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            R   L++ ++ +++ VFRD+Q L+Y YA+K+NS+  M ++GSKG+LLKLV  S+CLGLQH
Sbjct: 703  RSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQH 762

Query: 1005 SSAPLSFRVPSMLSCSARNHSDF--------DTPGS---HILYAVIENSFLSGLDPLECY 859
            S  PLSFR P  LSC+A N+           DT  S   +I YAV+E+SF+ GL+PLEC+
Sbjct: 763  SLVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECF 822

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSD--- 688
            VHSV+ RD+SF +NA++PGTL R++MF+MRDL  AYDGTVRNAYG+Q+VQFCY +     
Sbjct: 823  VHSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTF 882

Query: 687  KVTSTEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXX 508
              TS  D++  Q S+  +   GG+PVGSL+AC+ISEAAYSALD+P               
Sbjct: 883  SPTSCPDKLVSQGSSLPD-GIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRV 941

Query: 507  XXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EK 331
                  ++   Q ++LFLS KL R  +G EYGA+ VK+HLE+++F +++S  +I+FS + 
Sbjct: 942  LECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQM 1001

Query: 330  NCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHC 151
            + +   SPW+CHFH+ K+ + ++ L V SI  AL  +C +     K  LP M + S + C
Sbjct: 1002 SSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKA-C 1060

Query: 150  SMAGPE----TSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            S+   E    T CI  ++   +     L  ++D+++P LL  V+KGF E++KV+
Sbjct: 1061 SVIDMENEDDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVE 1114


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X1 [Gossypium raimondii]
            gi|763758424|gb|KJB25755.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
            gi|763758426|gb|KJB25757.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  509 bits (1311), Expect = e-141
 Identities = 294/714 (41%), Positives = 423/714 (59%), Gaps = 22/714 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E                 
Sbjct: 443  VLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSL------------- 489

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                            D   +N    + L  LS        +VK       ED   L+  
Sbjct: 490  ----------------DRQLINGQSGRNLLSLSHDSLTAAYLVK-------EDGVLLNLF 526

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QLEM   +H   PAIVKAP     +WTGKQL SML P +F++ F  +          
Sbjct: 527  QMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLI 586

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                 S+WL+D D +++ +L+++Y GK LD L +AQE+L EW+SMRG SVSL D+YLS +
Sbjct: 587  CSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPD 646

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            + S+ NM++E+  GLQEA Q    K  +++  C + L  + E+T+     +V+ +     
Sbjct: 647  TDSQKNMMDEIFYGLQEAEQTCNFKQLMVDS-CQDFLAGNDEETNRFMVLDVEQMCYEKQ 705

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            R   L++ ++ +++ VFRD+Q L+Y YA+K+NS+  M ++GSKG+LLKLV  S+CLGLQH
Sbjct: 706  RSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQH 765

Query: 1005 SSAPLSFRVPSMLSCSARNHSDF--------DTPGS---HILYAVIENSFLSGLDPLECY 859
            S  PLSFR P  LSC+A N+           DT  S   +I YAV+E+SF+ GL+PLEC+
Sbjct: 766  SLVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECF 825

Query: 858  VHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSD--- 688
            VHSV+ RD+SF +NA++PGTL R++MF+MRDL  AYDGTVRNAYG+Q+VQFCY +     
Sbjct: 826  VHSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTF 885

Query: 687  KVTSTEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXX 508
              TS  D++  Q S+  +   GG+PVGSL+AC+ISEAAYSALD+P               
Sbjct: 886  SPTSCPDKLVSQGSSLPD-GIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRV 944

Query: 507  XXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFS-EK 331
                  ++   Q ++LFLS KL R  +G EYGA+ VK+HLE+++F +++S  +I+FS + 
Sbjct: 945  LECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQM 1004

Query: 330  NCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHC 151
            + +   SPW+CHFH+ K+ + ++ L V SI  AL  +C +     K  LP M + S + C
Sbjct: 1005 SSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKA-C 1063

Query: 150  SMAGPE----TSCIVGSVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
            S+   E    T CI  ++   +     L  ++D+++P LL  V+KGF E++KV+
Sbjct: 1064 SVIDMENEDDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVE 1117


>ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
            [Cucumis sativus]
          Length = 1361

 Score =  508 bits (1307), Expect = e-140
 Identities = 288/714 (40%), Positives = 409/714 (57%), Gaps = 22/714 (3%)
 Frame = -2

Query: 2076 ILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXXXXXXXXXXXXX 1897
            +LP  +V SLNPL C P RGDFDGDCL  YVPQS+++RVE+RE                 
Sbjct: 333  LLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQSGR-- 390

Query: 1896 XXXXXXXXXXXXXLRKDDVYLNKVQIQQLEMLSLHLPPFPAIVKAPTPEVREDEACLHQR 1717
                                 N + +    + + HL             + ED   L+  
Sbjct: 391  ---------------------NLLSLSHDSLTAAHL-------------ILEDGVSLNLF 416

Query: 1716 PIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSMLMPQDFNFDFPVNXXXXXXXXXX 1537
             ++QL+ML  H    PAIVK+P  +   WTGKQL S+L+P DF++  P +          
Sbjct: 417  QMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELI 476

Query: 1536 XXXXXSAWLQDTDDSIYSTLVRNYGGKTLDILFSAQEILLEWISMRGFSVSLSDIYLSSN 1357
                   WL+D+  +++  L+ +  GKTLD L  AQ +L EW+S RG SVSLSD+YLS +
Sbjct: 477  SSEGSY-WLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVD 535

Query: 1356 SCSRGNMVEEVSMGLQEATQAFRTKDFLINRMCMENLLRDSEDTHNCETFEVDDI---DN 1186
            S S  NM++++  GLQEA +    K  +++    E L+ + ED  +  +  V+ +     
Sbjct: 536  SYSHENMMDDIFCGLQEAEETCNLKQLMVDSH-KEILIGNDEDNQHLLSIAVERLIYEKQ 594

Query: 1185 RLCDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQH 1006
            +   L + ++ A++ VFRD+Q LVY Y+ K+NS+L M ++GSKG+L+KLV  S+CLGLQH
Sbjct: 595  KSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQH 654

Query: 1005 SSAPLSFRVPSMLSCSARNHSDF----------DTPGSHILYAVIENSFLSGLDPLECYV 856
            S   LSF +P  LSC+A N              D   S I YAV+ENSFLSGL+P EC+ 
Sbjct: 655  SLVTLSFSLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFA 714

Query: 855  HSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQFCYGVSDKVTS 676
            HSV+NRDSSF +NAE+PGTL RK+ F MRD+Y AYDGTVRNAYGNQLVQFCY +    + 
Sbjct: 715  HSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSE 774

Query: 675  TEDEISCQISTGSERRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXX 496
            +E E     +   +R  GG PVGSLAAC+ISEAAYSALD+P                   
Sbjct: 775  SESE-----NNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECG 829

Query: 495  XXKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAIVFSE-KNCQT 319
              + +  Q  +LFLS+KL + +YG EYGA+ VK+HLE+V+F +++S   I+FS   + + 
Sbjct: 830  SKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKK 889

Query: 318  HLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSSSHCSMAG 139
            H SPW+CHFH+ KE ++K+ L + S+  +L   C S   + +  LP + +  +  C +A 
Sbjct: 890  HFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQI-ITQDCPLAD 948

Query: 138  P-----ETSCIVGSVDIEEGCSN---PLAGVRDVMMPFLLGTVIKGFVEVEKVD 1
                  +T C+  +V I E   N    L  ++D+++ FLLGTVI+GF E+++VD
Sbjct: 949  SLTEDGDTVCL--TVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVD 1000