BLASTX nr result

ID: Papaver31_contig00015006 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00015006
         (744 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278014.1| PREDICTED: splicing factor U2af large subuni...    75   4e-11
ref|XP_010278013.1| PREDICTED: splicing factor U2af large subuni...    75   4e-11

>ref|XP_010278014.1| PREDICTED: splicing factor U2af large subunit A-like isoform X2
           [Nelumbo nucifera]
          Length = 942

 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 14/170 (8%)
 Frame = -1

Query: 468 MTRMSPKQEKY--------ENRNDGTSARTRPFTFEEIMLRRXXXXXXXXXXXXXXXXXK 313
           M+R+S +++KY        +N N+GT+ARTRPF+FEEIMLRR                 K
Sbjct: 4   MSRISHQKDKYGLDYELSRDNCNEGTAARTRPFSFEEIMLRRQNKKPTSDAKEGTGELGK 63

Query: 312 LLVKGNDVTIPNHSELGEAH----EEIKAKASDENEKIRSTGEPVSTPAEKDQLSR-KDN 148
           L V G D     HSE    +    + I   AS++  K  S  +  +TP +K +L + KD+
Sbjct: 64  LSVSGKDNVESTHSEAAGGYKWSKDAIAMNASEDTAKRISKNQEGNTPIKKSKLVKDKDD 123

Query: 147 ENFDAKSYLVEKLDKEFSDSTKEEKSEIGSRFRSRN-EEVRAQLENETDK 1
            + D ++ L  + +      +K +K+E  S+ +SR+ + +R   E+E++K
Sbjct: 124 GSHDIENKLSARSNNNMGSRSKGDKNEKQSQLKSRSYDRMRDYFEDESEK 173


>ref|XP_010278013.1| PREDICTED: splicing factor U2af large subunit A-like isoform X1
           [Nelumbo nucifera]
          Length = 943

 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 14/170 (8%)
 Frame = -1

Query: 468 MTRMSPKQEKY--------ENRNDGTSARTRPFTFEEIMLRRXXXXXXXXXXXXXXXXXK 313
           M+R+S +++KY        +N N+GT+ARTRPF+FEEIMLRR                 K
Sbjct: 4   MSRISHQKDKYGLDYELSRDNCNEGTAARTRPFSFEEIMLRRQNKKPTSDAKEGTGELGK 63

Query: 312 LLVKGNDVTIPNHSELGEAH----EEIKAKASDENEKIRSTGEPVSTPAEKDQLSR-KDN 148
           L V G D     HSE    +    + I   AS++  K  S  +  +TP +K +L + KD+
Sbjct: 64  LSVSGKDNVESTHSEAAGGYKWSKDAIAMNASEDTAKRISKNQEGNTPIKKSKLVKDKDD 123

Query: 147 ENFDAKSYLVEKLDKEFSDSTKEEKSEIGSRFRSRN-EEVRAQLENETDK 1
            + D ++ L  + +      +K +K+E  S+ +SR+ + +R   E+E++K
Sbjct: 124 GSHDIENKLSARSNNNMGSRSKGDKNEKQSQLKSRSYDRMRDYFEDESEK 173


Top