BLASTX nr result

ID: Papaver30_contig00054815 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00054815
         (804 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532277.1| conserved hypothetical protein [Ricinus comm...    60   2e-06
ref|XP_007099644.1| F-box family protein [Theobroma cacao] gi|50...    42   4e-06

>ref|XP_002532277.1| conserved hypothetical protein [Ricinus communis]
           gi|223528011|gb|EEF30092.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 410

 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
 Frame = +1

Query: 517 LVGSCNGLI*LGRYYNRFNIEPIYIFNPITGDYTYHPKFFVPAGSHLTNHRLACEFGYVG 696
           ++GSCNGL+ L    +       YI+NP T DY   P+     G  L  HR+A  FG+  
Sbjct: 119 VIGSCNGLLYL---LDSLQQRANYIYNPFTSDYLELPE----PGQVLNQHRVATGFGFHS 171

Query: 697 STNEYKVVRIYY-------------GDYAVGVGQLQVCTIGSG-CGWRNK 804
           +T EYKVVR+ Y               Y++   ++QV T+G+G   WR+K
Sbjct: 172 TTKEYKVVRVVYYRNNKEEGTNFQKRRYSLPRSEVQVLTVGNGSLTWRSK 221


>ref|XP_007099644.1| F-box family protein [Theobroma cacao] gi|508728490|gb|EOY20387.1|
           F-box family protein [Theobroma cacao]
          Length = 357

 Score = 42.4 bits (98), Expect(2) = 4e-06
 Identities = 25/65 (38%), Positives = 35/65 (53%)
 Frame = +3

Query: 198 DNLHLDIFLNILSRVPTESILECKLV*KSWGNLLRKKYSIDVHVLRQINQLYAADVDKID 377
           DNL  D+ + ILSR+P +S+L  + V ++W  LL+  Y I  HV    N+         D
Sbjct: 4   DNLPRDLIIEILSRLPVKSLLRFRCVHRTWLCLLKSSYFITKHVQNPNNK---------D 54

Query: 378 IGFLF 392
            GFLF
Sbjct: 55  HGFLF 59



 Score = 36.2 bits (82), Expect(2) = 4e-06
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 508 WEYLVGSCNGLI*LGRYYNR-FNIEPIYIFNPITGDYTYHPKFFVPAGSHLTNHRLACEF 684
           W  +VGSCNGL+ L  Y +  F    I ++NP    +   P+  +        H +    
Sbjct: 92  WASVVGSCNGLVCL--YIDHPFPCTKILLYNPALRVHKIIPESTLSRPKSGRLHHVTFGL 149

Query: 685 GYVGSTNEYKVVRI 726
           GY    N++KVVR+
Sbjct: 150 GYDSVNNDFKVVRV 163


Top