BLASTX nr result
ID: Papaver30_contig00051819
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver30_contig00051819
(400 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFV74904.1| RNA polymerase II second largest subunit, partial... 36 1e-06
ref|XP_011086076.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 36 3e-06
ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II su... 34 4e-06
gb|AAT12267.1| RNA polymerase II second largest subunit [Diapens... 34 4e-06
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 33 6e-06
gb|AAY85236.1| RNA polymerase II second largest subunit, partial... 33 6e-06
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis... 33 7e-06
emb|CAD88602.1| RNA polymerase II second largest subunit [Alangi... 33 7e-06
gb|AAT69112.1| RNA polymerase II, partial [Odonellia hirtiflora] 33 7e-06
ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II su... 33 8e-06
ref|XP_010538559.1| PREDICTED: DNA-directed RNA polymerase II su... 33 8e-06
ref|XP_010439438.1| PREDICTED: DNA-directed RNA polymerase II su... 33 8e-06
ref|XP_010434140.1| PREDICTED: DNA-directed RNA polymerase II su... 33 8e-06
ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutr... 33 8e-06
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps... 33 8e-06
gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschsch... 33 8e-06
gb|AAY85235.1| RNA polymerase II second largest subunit, partial... 33 8e-06
gb|AAY85202.1| RNA polymerase II second largest subunit, partial... 33 8e-06
gb|AJS14113.1| RNA polymerase II second largest subunit, partial... 33 9e-06
gb|AAS86824.1| RNA polymerase II second largest subunit, partial... 33 9e-06
>gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
alniformosanae]
Length = 569
Score = 35.8 bits (81), Expect(3) = 1e-06
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ + S SF Y + H S+RHS++ I + LL T + L
Sbjct: 344 TRVSGEDVIIGKTSPIAQDESQGQSFRYTKRDHSTSLRHSETGIVDQV---LLTTNADGL 400
Query: 218 GFIQV 204
F++V
Sbjct: 401 RFVKV 405
Score = 32.7 bits (73), Expect(3) = 1e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 439
Score = 29.3 bits (64), Expect(3) = 1e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 445 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 477
>ref|XP_011086076.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Sesamum indicum]
Length = 1195
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T + + + Y +C H S+RHS++ I + LL T + L
Sbjct: 869 TRVSGEDVIIGKTTPISPDDAQGPAARYTKCDHSTSLRHSETGIVDQV---LLITNADGL 925
Query: 218 GFIQV 204
F++V
Sbjct: 926 RFVKV 930
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 937 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 964
Score = 28.1 bits (61), Expect(3) = 3e-06
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMN-DNGQLID*TMRKVEDH 43
IT DIIVNPH + GQLI+ M KV H
Sbjct: 970 ITPDIIVNPHAIPSRMAIGQLIECVMGKVAAH 1001
>ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo
nucifera]
Length = 1189
Score = 34.3 bits (77), Expect(3) = 4e-06
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T S S Y + H S+RHS+S + + LL T + L
Sbjct: 863 TRVSGEDVIIGKTTPIAQDDSQGQSSRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 919
Query: 218 GFIQV 204
F++V
Sbjct: 920 RFVKV 924
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 931 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 958
Score = 29.3 bits (64), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 964 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 996
>gb|AAT12267.1| RNA polymerase II second largest subunit [Diapensia lapponica]
Length = 541
Score = 34.3 bits (77), Expect(3) = 4e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T +T + Y + H S+RHS+S + + LL T + L
Sbjct: 351 TRVSGEDVIIGKTTPIAPDDATGQNSRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 407
Query: 218 GFIQV 204
F++V
Sbjct: 408 RFVKV 412
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 419 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 446
Score = 29.3 bits (64), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 452 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 484
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 33.5 bits (75), Expect(3) = 6e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T + S + Y + H S+RHS+S + + LL T + L
Sbjct: 867 TRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 923
Query: 218 GFIQV 204
F++V
Sbjct: 924 RFVKV 928
Score = 32.7 bits (73), Expect(3) = 6e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 935 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 962
Score = 29.3 bits (64), Expect(3) = 6e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 968 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1000
>gb|AAY85236.1| RNA polymerase II second largest subunit, partial [Vitis piasezkii]
Length = 951
Score = 33.5 bits (75), Expect(3) = 6e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T + S + Y + H S+RHS+S + + LL T + L
Sbjct: 761 TRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 817
Query: 218 GFIQV 204
F++V
Sbjct: 818 RFVKV 822
Score = 32.7 bits (73), Expect(3) = 6e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 856
Score = 29.3 bits (64), Expect(3) = 6e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 862 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 894
>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
Length = 551
Score = 33.5 bits (75), Expect(3) = 7e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T + S + Y + H S+RHS+S + + LL T + L
Sbjct: 352 TRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 408
Query: 218 GFIQV 204
F++V
Sbjct: 409 RFVKV 413
Score = 32.7 bits (73), Expect(3) = 7e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 420 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 447
Score = 29.3 bits (64), Expect(3) = 7e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 453 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 485
>emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
Length = 540
Score = 33.5 bits (75), Expect(3) = 7e-06
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T S + Y + H S+RHS++ I + LL T + L
Sbjct: 350 TRVSGEDVIIGKTTPIAQDDSQGQASRYSRRDHSTSLRHSETGIVDQV---LLTTNADGL 406
Query: 218 GFIQV 204
F++V
Sbjct: 407 RFVKV 411
Score = 32.7 bits (73), Expect(3) = 7e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 445
Score = 29.3 bits (64), Expect(3) = 7e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 451 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 483
>gb|AAT69112.1| RNA polymerase II, partial [Odonellia hirtiflora]
Length = 202
Score = 33.5 bits (75), Expect(3) = 7e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T + + S Y + H S+RHS++ I + LL T + L
Sbjct: 64 TRVSGEDVIIGKTTPISQDDAQGQSARYTKRDHSTSLRHSETGIVDQV---LLTTNADGL 120
Query: 218 GFIQV 204
F++V
Sbjct: 121 RFVKV 125
Score = 32.7 bits (73), Expect(3) = 7e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 132 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 159
Score = 29.3 bits (64), Expect(3) = 7e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 165 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 197
>ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amborella
trichopoda] gi|548863150|gb|ERN20505.1| hypothetical
protein AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 33.1 bits (74), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T T + Y + H S+RHS+S + + LL T + L
Sbjct: 860 TRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 916
Query: 218 GFIQV 204
F++V
Sbjct: 917 RFVKV 921
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 928 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 955
Score = 29.3 bits (64), Expect(3) = 8e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 961 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 993
>ref|XP_010538559.1| PREDICTED: DNA-directed RNA polymerase II subunit 2 [Tarenaya
hassleriana] gi|729294991|ref|XP_010538568.1| PREDICTED:
DNA-directed RNA polymerase II subunit 2 [Tarenaya
hassleriana]
Length = 1189
Score = 33.1 bits (74), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T + + S Y + H S+RHS++ I + LL T + L
Sbjct: 865 TRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGIVDQV---LLTTNADGL 921
Query: 218 GFIQV 204
F++V
Sbjct: 922 RFVKV 926
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 933 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 960
Score = 29.3 bits (64), Expect(3) = 8e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 966 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 998
>ref|XP_010439438.1| PREDICTED: DNA-directed RNA polymerase II subunit 2 [Camelina sativa]
Length = 1188
Score = 33.5 bits (75), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRVTGEDVI+ T + + S Y + H S+RHS++ + + LL T + L
Sbjct: 866 TRVTGEDVIIGKTTPISQDEAEGQSSRYTRRDHSISLRHSETGMVDQV---LLTTNADGL 922
Query: 218 GFIQV 204
F++V
Sbjct: 923 RFVKV 927
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 961
Score = 28.9 bits (63), Expect(3) = 8e-06
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
+T DIIVNPH + GQLI+ M KV H+
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 999
>ref|XP_010434140.1| PREDICTED: DNA-directed RNA polymerase II subunit 2-like [Camelina
sativa]
Length = 1188
Score = 33.5 bits (75), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRVTGEDVI+ T + + S Y + H S+RHS++ + + LL T + L
Sbjct: 866 TRVTGEDVIIGKTTPISQDEAEGQSSRYTRRDHSISLRHSETGMVDQV---LLTTNADGL 922
Query: 218 GFIQV 204
F++V
Sbjct: 923 RFVKV 927
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 961
Score = 28.9 bits (63), Expect(3) = 8e-06
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
+T DIIVNPH + GQLI+ M KV H+
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 999
>ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
gi|557114913|gb|ESQ55196.1| hypothetical protein
EUTSA_v10024251mg [Eutrema salsugineum]
Length = 1188
Score = 33.5 bits (75), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRVTGEDVI+ T + + S Y + H S+RHS++ + + LL T + L
Sbjct: 866 TRVTGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQV---LLTTNADGL 922
Query: 218 GFIQV 204
F++V
Sbjct: 923 RFVKV 927
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 961
Score = 28.9 bits (63), Expect(3) = 8e-06
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
+T DIIVNPH + GQLI+ M KV H+
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 999
>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
gi|482554282|gb|EOA18475.1| hypothetical protein
CARUB_v10007021mg [Capsella rubella]
Length = 1188
Score = 33.5 bits (75), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRVTGEDVI+ T + + S Y + H S+RHS++ + + LL T + L
Sbjct: 866 TRVTGEDVIIGKTTPISQDEAEGQSSRYTRRDHSISLRHSETGMVDQV---LLTTNADGL 922
Query: 218 GFIQV 204
F++V
Sbjct: 923 RFVKV 927
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 961
Score = 28.9 bits (63), Expect(3) = 8e-06
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
+T DIIVNPH + GQLI+ M KV H+
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 999
>gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
Length = 951
Score = 33.1 bits (74), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T S + Y + H S+RHS+S + + LL T + L
Sbjct: 761 TRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 817
Query: 218 GFIQV 204
F++V
Sbjct: 818 RFVKV 822
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 856
Score = 29.3 bits (64), Expect(3) = 8e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 862 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 894
>gb|AAY85235.1| RNA polymerase II second largest subunit, partial [Tetracentron
sinense]
Length = 951
Score = 33.1 bits (74), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T S + Y + H S+RHS+S + + LL T + L
Sbjct: 761 TRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 817
Query: 218 GFIQV 204
F++V
Sbjct: 818 RFVKV 822
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 856
Score = 29.3 bits (64), Expect(3) = 8e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 862 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 894
>gb|AAY85202.1| RNA polymerase II second largest subunit, partial [Dianthus
caryophyllus]
Length = 674
Score = 33.5 bits (75), Expect(3) = 8e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T + + + Y + H S+RHS+S I + LL T + L
Sbjct: 484 TRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIVDQV---LLTTNADGL 540
Query: 218 GFIQV 204
F++V
Sbjct: 541 RFVKV 545
Score = 32.7 bits (73), Expect(3) = 8e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 552 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 579
Score = 28.9 bits (63), Expect(3) = 8e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 585 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHV 617
>gb|AJS14113.1| RNA polymerase II second largest subunit, partial [Maburea
trinervis]
Length = 569
Score = 33.1 bits (74), Expect(3) = 9e-06
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T S + Y + H S+RHS++ I + LL T + L
Sbjct: 344 TRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSETGIVDQV---LLTTNADGL 400
Query: 218 GFIQV 204
F++V
Sbjct: 401 RFVKV 405
Score = 32.7 bits (73), Expect(3) = 9e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 439
Score = 29.3 bits (64), Expect(3) = 9e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 445 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 477
>gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
californica]
Length = 559
Score = 33.1 bits (74), Expect(3) = 9e-06
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = -3
Query: 398 TRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNTL 219
TRV+GEDVI+ T S + Y + H S+RHS+S + + LL T + L
Sbjct: 369 TRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADGL 425
Query: 218 GFIQV 204
F++V
Sbjct: 426 RFVKV 430
Score = 32.7 bits (73), Expect(3) = 9e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -1
Query: 226 IP*VLFKFISRHG---TVGMTCTQEDIP 152
IP + KF SRHG TVGMT TQED+P
Sbjct: 437 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 464
Score = 29.3 bits (64), Expect(3) = 9e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 135 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 40
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 470 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 502