BLASTX nr result
ID: Papaver30_contig00048021
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver30_contig00048021
(903 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japo... 111 2e-33
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ... 108 4e-33
gb|ABG21864.1| retrotransposon protein, putative, Ty1-copia subc... 108 6e-33
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc... 108 1e-32
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo... 108 1e-32
gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subc... 108 1e-32
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc... 108 1e-32
dbj|BAB03249.1| polyprotein [Oryza sativa] 108 1e-32
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group] 108 1e-32
gb|AAS01944.1| putative retrotransposon protein [Oryza sativa Ja... 108 1e-32
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ... 108 1e-32
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc... 108 2e-32
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa... 108 2e-32
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group] 108 2e-32
gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subc... 108 2e-32
gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subc... 107 2e-32
gb|AAX96287.1| retrotransposon protein, putative, Ty1-copia sub-... 110 2e-32
ref|XP_002489303.1| hypothetical protein SORBIDRAFT_0010s005460 ... 107 2e-32
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc... 108 2e-32
gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TN... 107 4e-32
>gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japonica Group]
Length = 1028
Score = 111 bits (278), Expect(4) = 2e-33
Identities = 56/116 (48%), Positives = 74/116 (63%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +PE +HW
Sbjct: 786 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPEDDHWQ 845
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 846 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 901
Score = 42.0 bits (97), Expect(4) = 2e-33
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 636 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 690
Score = 34.7 bits (78), Expect(4) = 2e-33
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 691 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 732
Score = 23.5 bits (49), Expect(4) = 2e-33
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 762 TLVQSHYVDKVLSRFGYSDCKPA 784
>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
Length = 1309
Score = 108 bits (270), Expect(4) = 4e-33
Identities = 58/119 (48%), Positives = 73/119 (61%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S K + ++ L YS+ IG LM L + PDI+Y V +L+ Y+ SP HW
Sbjct: 1067 TPYDPSYTLSKYEGEPVNQLLYSQIIGSLMYLSSATRPDISYAVCRLARYSASPGDRHWV 1126
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLIFGR 860
AL RVL YLK ++ Y + VLEG DANWI DS++ KSTSGYVFTLAGG + R
Sbjct: 1127 ALYRVLRYLKGAMNLGIKYTGFPSVLEGFSDANWISDSDQMKSTSGYVFTLAGGAVSWR 1185
Score = 43.9 bits (102), Expect(4) = 4e-33
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+ QPE FVVKG E K C+L KSL+ + + F++ + ++GF V
Sbjct: 918 ELEEEIYMQQPEGFVVKGQESKVCRLIKSLYGLKQAPRQWHEKFNNTLTTAGFCV 972
Score = 33.9 bits (76), Expect(4) = 4e-33
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI +++ I TK +
Sbjct: 973 NEADKCVYYRFSGGKGVIMCLYVDDILIFGTDLEAIMETKLF 1014
Score = 23.9 bits (50), Expect(4) = 4e-33
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCK 495
+LS SH VE V+ R+ CK
Sbjct: 1043 TLSQSHYVEKVMTRFGHMDCK 1063
>gb|ABG21864.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1297
Score = 108 bits (270), Expect(4) = 6e-33
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1055 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASVTRPDISFAVSKLSRFVTNPGDDHWQ 1114
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1115 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1170
Score = 43.1 bits (100), Expect(4) = 6e-33
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIYIDQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 905 ELEEEIYIDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 959
Score = 34.7 bits (78), Expect(4) = 6e-33
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 960 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1001
Score = 23.5 bits (49), Expect(4) = 6e-33
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1031 TLVQSHYVDKVLSRFGYSDCKPA 1053
>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1171 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1230
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1231 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1286
Score = 42.0 bits (97), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 1021 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1075
Score = 34.7 bits (78), Expect(4) = 1e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1076 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1117
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1147 TLVQSHYVDKVLSRFGYSDCKPA 1169
>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
Length = 1394
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1152 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1211
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1212 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1267
Score = 42.0 bits (97), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 1002 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1056
Score = 34.7 bits (78), Expect(4) = 1e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1057 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1098
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1128 TLVQSHYVDKVLSRFGYSDCKPA 1150
>gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1357
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1115 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1174
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1175 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1230
Score = 42.0 bits (97), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 965 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1019
Score = 34.7 bits (78), Expect(4) = 1e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1020 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1061
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1091 TLVQSHYVDKVLSRFGYSDCKPA 1113
>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1303
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1171 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1230
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1231 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1286
Score = 42.0 bits (97), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 1021 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1075
Score = 34.7 bits (78), Expect(4) = 1e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1076 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1117
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1147 TLVQSHYVDKVLSRFGYSDCKPA 1169
>dbj|BAB03249.1| polyprotein [Oryza sativa]
Length = 1268
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1026 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1085
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1086 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1141
Score = 42.0 bits (97), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 876 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHKKFDTTLTSAGFVV 930
Score = 34.7 bits (78), Expect(4) = 1e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 931 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 972
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1002 TLVQSHYVDKVLSRFGYSDCKPA 1024
>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1026 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1085
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1086 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1141
Score = 42.0 bits (97), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 876 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 930
Score = 34.7 bits (78), Expect(4) = 1e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 931 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 972
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1002 TLVQSHYVDKVLSRFGYSDCKPA 1024
>gb|AAS01944.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108709426|gb|ABF97221.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 710
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 540 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 599
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 600 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 655
Score = 42.0 bits (97), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 390 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 444
Score = 34.7 bits (78), Expect(4) = 1e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 445 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 486
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 516 TLVQSHYVDKVLSRFGYSDCKPA 538
>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 108 bits (271), Expect(4) = 1e-32
Identities = 56/119 (47%), Positives = 74/119 (62%)
Frame = +3
Query: 495 ACLTSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQE 674
A T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +
Sbjct: 1023 AAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSQFVSNPGDD 1082
Query: 675 HWDALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
HW AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1083 HWHALERVMRYLKGTMSYGIHYAGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1141
Score = 43.1 bits (100), Expect(4) = 1e-32
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD+ + S+GF V
Sbjct: 876 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDNTLTSAGFVV 930
Score = 33.1 bits (74), Expect(4) = 1e-32
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K +
Sbjct: 931 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDF 972
Score = 23.5 bits (49), Expect(4) = 1e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1002 TLVQSHYVDKVLSRFGYSDCKAA 1024
>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1479
Score = 108 bits (269), Expect(4) = 2e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1237 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWR 1296
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1297 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1352
Score = 42.0 bits (97), Expect(4) = 2e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 1087 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1141
Score = 34.7 bits (78), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1142 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1183
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1213 TLVQSHYVDKVLSRFGYSDCKPA 1235
>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1408
Score = 108 bits (269), Expect(4) = 2e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1166 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWR 1225
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1226 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1281
Score = 42.0 bits (97), Expect(4) = 2e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 1016 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1070
Score = 34.7 bits (78), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1071 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1112
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1142 TLVQSHYVDKVLSRFGYSDCKPA 1164
>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
Length = 1321
Score = 108 bits (269), Expect(4) = 2e-32
Identities = 55/114 (48%), Positives = 72/114 (63%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1079 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1138
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGG 845
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG
Sbjct: 1139 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGG 1192
Score = 42.0 bits (97), Expect(4) = 2e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 929 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 983
Score = 34.7 bits (78), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 984 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1025
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1055 TLVQSHYVDKVLSRFGYSDCKPA 1077
>gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 108 bits (271), Expect(4) = 2e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1171 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1230
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1231 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1286
Score = 41.2 bits (95), Expect(4) = 2e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 1021 ELEEEIYMDQPDGYVLEGQEVMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1075
Score = 34.7 bits (78), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1076 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1117
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1147 TLVQSHYVDKVLSRFGYSDCKPA 1169
>gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1286
Score = 107 bits (267), Expect(4) = 2e-32
Identities = 54/116 (46%), Positives = 72/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1044 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1103
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGY FTL GG +
Sbjct: 1104 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAV 1159
Score = 42.7 bits (99), Expect(4) = 2e-32
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E+ CKL KSL+ + + FD + S+GF V
Sbjct: 894 ELEEEIYMDQPDGYVLEGQEEMVCKLLKSLYGLKQAPKQWHEKFDITLTSAGFVV 948
Score = 34.7 bits (78), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 949 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 990
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1020 TLVQSHYVDKVLSRFGYSDCKPA 1042
>gb|AAX96287.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|62734227|gb|AAX96336.1|
retrotransposon protein, putative, Ty1-copia sub-class
[Oryza sativa Japonica Group] gi|77549796|gb|ABA92593.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1099
Score = 110 bits (274), Expect(4) = 2e-32
Identities = 55/116 (47%), Positives = 74/116 (63%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + + E +HW
Sbjct: 910 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNLEDDHWQ 969
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL R++ YLK ++++ Y RY VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 970 ALERIMRYLKGTMSYRIHYTRYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1025
Score = 40.8 bits (94), Expect(4) = 2e-32
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
+L++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 760 DLEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 814
Score = 33.9 bits (76), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 815 NEADKCVYYRYGGREGVILCLYVDDILIFRTSLNVIEEVKDY 856
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 886 TLVQSHYVDKVLSRFGYSDCKPA 908
>ref|XP_002489303.1| hypothetical protein SORBIDRAFT_0010s005460 [Sorghum bicolor]
gi|241946951|gb|EES20096.1| hypothetical protein
SORBIDRAFT_0010s005460 [Sorghum bicolor]
Length = 699
Score = 107 bits (266), Expect(4) = 2e-32
Identities = 54/116 (46%), Positives = 71/116 (61%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S R KN L YS+ IG LM L + PDI++ VSKLS + +P HW+
Sbjct: 457 TPYDPSVRLRKNHRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDTHWN 516
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RVL YLK ++++ + Y VLEG CDANWI D+++ +TSGYVF GG +
Sbjct: 517 ALERVLRYLKGTMSYGIYFSGYPRVLEGYCDANWISDADQLYATSGYVFLFGGGAV 572
Score = 45.1 bits (105), Expect(4) = 2e-32
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ F+ G E K CKL KSL+ + + FD + S+GF V
Sbjct: 306 ELEEEIYMDQPDGFIANGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAV 360
Score = 33.5 bits (75), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI N+ +I K +
Sbjct: 361 NEADKCVYYRFGGGDGVILCLYVDDILIFGNNLKVIKEVKEF 402
Score = 22.7 bits (47), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH VE VL R+ S C A
Sbjct: 433 TLMQSHYVEKVLNRFGYSECTPA 455
>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1453
Score = 108 bits (271), Expect(4) = 2e-32
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ L YS+ IG LM L + PDI++ VSKLS + +P +HW
Sbjct: 1211 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSWFVSNPGDDHWQ 1270
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGYVFTL GG +
Sbjct: 1271 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAV 1326
Score = 40.8 bits (94), Expect(4) = 2e-32
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + ++GF V
Sbjct: 1061 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTAAGFVV 1115
Score = 34.7 bits (78), Expect(4) = 2e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1116 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1157
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1187 TLVQSHYVDKVLSRFGYSDCKPA 1209
>gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TNT [Oryza sativa]
gi|31429907|gb|AAP51896.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1342
Score = 107 bits (266), Expect(4) = 4e-32
Identities = 54/116 (46%), Positives = 72/116 (62%)
Frame = +3
Query: 504 TSYDSSCRFEKNKSNGIS*LEYSRFIGCLMNLMNCKSPDIAYIVSKLSIYTCSPEQEHWD 683
T YD S KN+ G L YS+ IG LM L + P I++ VSKLS + +P +HW
Sbjct: 1100 TPYDPSVLLRKNRRIGRDQLRYSQIIGSLMYLASATRPGISFAVSKLSRFVSNPGDDHWQ 1159
Query: 684 ALNRVLWYLKYSITFCFIYERYLVVLEGICDANWIVDSEESKSTSGYVFTLAGGLI 851
AL RV+ YLK ++++ Y Y VLEG D+NWI D++E K+TSGY FTL GG +
Sbjct: 1160 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAV 1215
Score = 42.0 bits (97), Expect(4) = 4e-32
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 58 ELDKEIYIDQPEDFVVKGCEDKDCKLNKSLHCFQIST*TET**FDHVIMSSGFKV 222
EL++EIY+DQP+ +V++G E CKL KSL+ + + FD + S+GF V
Sbjct: 950 ELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVV 1004
Score = 34.7 bits (78), Expect(4) = 4e-32
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 222 NESDKYICK*LVKDACVIVCLYVDDMLILDINVDIINSTKTY 347
NE+DK + VI+CLYVDD+LI ++++I K Y
Sbjct: 1005 NEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDY 1046
Score = 23.5 bits (49), Expect(4) = 4e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 433 SLSHSHCVEFVLMRYNQSHCKHA 501
+L SH V+ VL R+ S CK A
Sbjct: 1076 TLVQSHYVDKVLSRFGYSDCKPA 1098