BLASTX nr result
ID: Papaver30_contig00047228
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver30_contig00047228
(1014 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays] 51 1e-14
gb|AAP68369.1| putative polyprotein, 3'-partial, partial [Oryza ... 49 2e-13
emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera] 41 2e-13
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s... 55 3e-13
emb|CAN76565.1| hypothetical protein VITISV_010942 [Vitis vinifera] 58 3e-11
ref|XP_008388960.1| PREDICTED: DNA polymerase zeta catalytic sub... 62 4e-11
emb|CAN81655.1| hypothetical protein VITISV_042593 [Vitis vinifera] 41 1e-10
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 64 2e-10
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus] 40 5e-09
gb|AAT81746.1| integrase core domain containing protein [Oryza s... 39 5e-09
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 68 1e-08
gb|AAR01736.1| putative Gag and Pol polyprotein [Oryza sativa Ja... 50 2e-08
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group] 57 2e-08
gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subc... 57 2e-08
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group] 55 2e-08
gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group... 55 2e-08
gb|ABA97460.1| retrotransposon protein, putative, Ty1-copia subc... 52 2e-08
gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 56 3e-08
emb|CAE01619.3| OSJNBa0042L16.8 [Oryza sativa Japonica Group] 38 3e-08
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group] 56 4e-08
>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
Length = 1264
Score = 51.2 bits (121), Expect(3) = 1e-14
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = -3
Query: 550 TCGLV----GGGSPLN*YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLP 383
TCGL G + ++LN++P + ++TPY W GR PS ++ WG + K+ +P+
Sbjct: 573 TCGLSKAWWGEAVLTSCHVLNRIPMGKEEKTPYEKWVGRKPSLSYLRTWGCMAKVNVPIN 632
Query: 382 KRTRLKPK 359
K+ +L P+
Sbjct: 633 KKRKLGPR 640
Score = 39.3 bits (90), Expect(3) = 1e-14
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = -1
Query: 156 ELILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTE 10
E++L+ED+ D PKRSK R+E S+ DFI L P T EA S++
Sbjct: 717 EIVLEEDDNDA-PKRSKRQRVEKSFGDDFIVYLVDDTPTTIAEAFASSD 764
Score = 37.4 bits (85), Expect(3) = 1e-14
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVY 219
+ VDCVF+ G S + F + D+ V+ I ESRDA FFEH++
Sbjct: 640 RTVDCVFL-GYASCSIAYRFLVVKSEVPDVYVDTIMESRDATFFEHIF 686
>gb|AAP68369.1| putative polyprotein, 3'-partial, partial [Oryza sativa Japonica
Group]
Length = 691
Score = 48.9 bits (115), Expect(3) = 2e-13
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = -3
Query: 499 KVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
+VP D+TPY +W GR PS ++ WG L K+ +P+ K+ +L PK
Sbjct: 478 RVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 524
Score = 44.3 bits (103), Expect(3) = 2e-13
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = -2
Query: 965 VLRGRLGTVNL*VNA*LASIGCVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLEL 786
V RL +N + + L+S+ +PKFS+ K C +SK K + N PLEL
Sbjct: 354 VWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLEL 413
Query: 785 IQLGLVDMSSTQNHCGKRW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 615
+ L +M+ GKR+ + L R +Y L K+YK EV NQL+
Sbjct: 414 LHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 471
Score = 30.8 bits (68), Expect(3) = 2e-13
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + D+ V I ESRDA FFE + H
Sbjct: 524 KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 576
>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
Length = 1316
Score = 41.2 bits (95), Expect(4) = 2e-13
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -1
Query: 144 KEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKE 28
KE +VD EP+R K R TS+ DF+T L ++PQT KE
Sbjct: 886 KEKQVDEEPRRGKRXRKSTSFGPDFLTYLLENDPQTFKE 924
Score = 38.5 bits (88), Expect(4) = 2e-13
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -3
Query: 460 LWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPKML 353
L +G P Y+ +KVWG L K+ +P PK+ ++ PK +
Sbjct: 776 LSSGHKPCYKYLKVWGCLAKVEVPKPKKVKIGPKTI 811
Score = 33.5 bits (75), Expect(4) = 2e-13
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 371 IETKNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHV--YSKP 210
I K +DC+F+ G + F + D+ VN I ESR+A FFE + Y+KP
Sbjct: 806 IGPKTIDCIFI-GYANNSSAYRFLVYKSEIPDVHVNTIIESRNAAFFETIFPYNKP 860
Score = 29.3 bits (64), Expect(4) = 2e-13
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 42/103 (40%)
Frame = -1
Query: 735 KMVITSVDDCTRYYLVYLLR-----IRMTP*KP*DV*T*SWKPIRSL------------- 610
K IT +DDCTRY VYLL+ I M +V K I+++
Sbjct: 677 KYFITFIDDCTRYCYVYLLKSKDEAIEMFKHYKIEVENQLSKKIKAIRSDRGGEYESPFE 736
Query: 609 ------------------------EHNNRILKEMIISMLISSG 553
E NR LKEM+ +ML+SSG
Sbjct: 737 EFCLEHGIIHQTIAPYSPQSNGMAERKNRTLKEMMNAMLLSSG 779
>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
Length = 1038
Score = 54.7 bits (130), Expect(3) = 3e-13
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
+ILN++P D+TPY LW G P+ +KVWG L K+ +P K+T + PK
Sbjct: 662 FILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPLPALKKTTVGPK 712
Score = 40.4 bits (93), Expect(3) = 3e-13
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = -1
Query: 609 EHNNRILKEMIISMLISSGLPAALWGEAVL 520
E NR LKEM+ +ML+SSGL +WGEAVL
Sbjct: 629 ERKNRTLKEMMNAMLLSSGLSDNMWGEAVL 658
Score = 28.1 bits (61), Expect(3) = 3e-13
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 260 ITESRDAEFFEHVY 219
I ESRD EFFEHV+
Sbjct: 738 INESRDVEFFEHVF 751
>emb|CAN76565.1| hypothetical protein VITISV_010942 [Vitis vinifera]
Length = 839
Score = 57.8 bits (138), Expect(3) = 3e-11
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPKML 353
+ILNK+P D T Y LW G PSY+ +KVW LTK+V+ PK+ ++ PK +
Sbjct: 321 HILNKIPHKNKDVTSYELWKGHKPSYKYLKVWECLTKVVLQKPKQVKIGPKTI 373
Score = 30.0 bits (66), Expect(3) = 3e-11
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 371 IETKNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVY 219
I K +DC+F+ G + F + DI + I ESR+A FFE+++
Sbjct: 368 IGPKTIDCIFI-GYANNSSAYHFLVHKSSIPDIHEDTIIESRNASFFENIF 417
Score = 28.5 bits (62), Expect(3) = 3e-11
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -1
Query: 123 EPKRSKIIRLETSYETDFITCLA*SEPQTCKEALI 19
EP+ SK + S+ +++T + +EP+T KEA+I
Sbjct: 444 EPRCSKRAKKTKSFGLEYLTYMLDNEPKTFKEAMI 478
>ref|XP_008388960.1| PREDICTED: DNA polymerase zeta catalytic subunit-like [Malus
domestica]
Length = 2068
Score = 62.0 bits (149), Expect(2) = 4e-11
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = -3
Query: 538 VGGGSPLN*YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
VG G + + VP +E+PY +W G P+Y+ +KVWG L K+ +PLPKRT+L PK
Sbjct: 1780 VGKGYVADGLVKLNVPLKXIBESPYEIWKGHKPTYKTLKVWGXLAKVQVPLPKRTKLGPK 1839
Query: 358 ML 353
+
Sbjct: 1840 TI 1841
Score = 34.3 bits (77), Expect(2) = 4e-11
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVY 219
K +D VF+ G + F + SDI VN I ES DAEFFE ++
Sbjct: 1839 KTIDXVFI-GYANNSAAYRFLVVKSXISDIHVNTILESADAEFFEDIF 1885
>emb|CAN81655.1| hypothetical protein VITISV_042593 [Vitis vinifera]
Length = 627
Score = 41.2 bits (95), Expect(3) = 1e-10
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = -2
Query: 953 RLGTVNL*VNA*LASIGCVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELI 783
RLG V+ L ++ +P FS+DF+HK E+C E+K A F +++ N++ L+LI
Sbjct: 282 RLGHVSNKTLKRLINMNLLPSFSIDFKHKCEVCVEAKMAKPPFH-SIERNTESLDLI 337
Score = 37.0 bits (84), Expect(3) = 1e-10
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -1
Query: 744 LW*KMVITSVDDCTRYYLVYLLR 676
+W IT +DDCTRYY VYLLR
Sbjct: 341 IWKMYFITFIDDCTRYYYVYLLR 363
Score = 35.8 bits (81), Expect(3) = 1e-10
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = -3
Query: 601 QPYP*GDDNFHVD*FRITCGLVGGGSPLN*YILNKVPF*ESDETPYGLWNGR*PSYECIK 422
+ Y G+D +VD F T L G + NK+P D T Y LW G PSY+ +K
Sbjct: 397 ETYIKGNDECYVDKFGSTPKLKGIINYFCKPHFNKIPHKNKDVTSYELWKGHKPSYKYLK 456
Query: 421 V 419
V
Sbjct: 457 V 457
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 63.9 bits (154), Expect(2) = 2e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPKML 353
Y+LNKVP ++++TPY LW GR PSY +++WG L K+ +P PK+ ++ PK +
Sbjct: 665 YLLNKVPKKKAEKTPYELWKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTI 717
Score = 30.0 bits (66), Expect(2) = 2e-10
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 371 IETKNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVY 219
I K +DC+F+ G F + DI N I ESR+A FFE V+
Sbjct: 712 IGPKTIDCIFI-GYAHNSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVF 761
>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 39.7 bits (91), Expect(4) = 5e-09
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRL 368
Y+ N++ +PY LW GR P+ E ++VWG L +P PK +L
Sbjct: 688 YVHNRITSRVIPTSPYELWKGRKPNLEHLRVWGCLAYYRVPDPKTLKL 735
Score = 36.2 bits (82), Expect(4) = 5e-09
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = -1
Query: 609 EHNNRILKEMIISMLISSGLPAALWGEAVL 520
E NR L EM ML SGLP +WGEAVL
Sbjct: 655 ERKNRTLVEMANCMLNQSGLPRNMWGEAVL 684
Score = 26.6 bits (57), Expect(4) = 5e-09
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 263 IITESRDAEFFEHVYSK 213
I+ ESRD EFFE+ +S+
Sbjct: 763 IVVESRDVEFFENKFSR 779
Score = 25.0 bits (53), Expect(4) = 5e-09
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Frame = -1
Query: 159 SELILKEDEVDVEPKRSKIIRLETSYETDFITCLA-----------------*SEPQTCK 31
SE ++ + EP++S +R E SY DF + L +P+T
Sbjct: 793 SEKRVQPSPIVEEPRKSTRVRKEKSYGDDFFSYLVEGTQKKVMREVIFAVNLDDDPKTFN 852
Query: 30 EALISTETP 4
EA+ S + P
Sbjct: 853 EAMSSRDAP 861
>gb|AAT81746.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108708962|gb|ABF96757.1| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1232
Score = 38.5 bits (88), Expect(4) = 5e-09
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKP 362
++LNK+ D TP+ W + + ++ WG L K+ +P+ K+ +L P
Sbjct: 628 HVLNKILMKHKDVTPFEEWERKKLNLSYLRTWGCLAKVSVPIAKKRKLGP 677
Score = 33.9 bits (76), Expect(4) = 5e-09
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 609 EHNNRILKEMIISMLISSGLPAALWGEAVL 520
E NR L EM+ +ML ++GL WGEAVL
Sbjct: 595 ERKNRTLTEMVNAMLDTTGLSKEWWGEAVL 624
Score = 28.5 bits (62), Expect(4) = 5e-09
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = -2
Query: 356 VDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
VDCVF+ G + F + D+ V I ESRDA FFE+ + P+ H
Sbjct: 680 VDCVFI-GCAIHSVGYRFLIVNSGVPDMRVGTIIESRDATFFENEF--PMKH 728
Score = 26.6 bits (57), Expect(4) = 5e-09
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 141 EDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTE 10
E++ V+ ++SK R+ S+ D+I L P+T +EA S +
Sbjct: 759 EEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPD 802
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 68.2 bits (165), Expect = 1e-08
Identities = 64/209 (30%), Positives = 88/209 (42%), Gaps = 9/209 (4%)
Frame = -1
Query: 609 EHNNRILKEMIISMLISSGLPAALWGEAVLLTSIS*IKYPFKNQMKLHMVYGTVDDLLMN 430
E NR LKEM+ +MLISS LP +WGEA+L + K P K K
Sbjct: 632 ERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYT 691
Query: 429 VSKCGGVXXXXXXXXLKELD*NQKC*LCFRIGYIEYTSTNRFLVVCSDF---------F* 277
+ G K++ K C IGY ++ RFLV S+
Sbjct: 692 YLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMES 751
Query: 276 HWCEYYYGI*GC*VXXXXXXXXXXXLEMCC*SPRFIFK*SELILKEDEVDVEPKRSKIIR 97
++ + C E S R + E + +EV+VEP+RSK +R
Sbjct: 752 RNASFFEDVFPC-----------KSKEEPSSSKRML----ESQDQNEEVEVEPRRSKRVR 796
Query: 96 LETSYETDFITCLA*SEPQTCKEALISTE 10
E S+ DF+T + EPQT KEA+ STE
Sbjct: 797 TEKSFGPDFLTFMLEGEPQTFKEAVNSTE 825
>gb|AAR01736.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
gi|108709997|gb|ABF97792.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1177
Score = 49.7 bits (117), Expect(3) = 2e-08
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
++LN+VP D+TPY +W GR PS + W L K+ +P+ K+ +L PK
Sbjct: 553 HVLNRVPNRNKDKTPYEIWIGRKPSLSYLCTWRCLAKVNVPITKKRKLGPK 603
Score = 30.8 bits (68), Expect(3) = 2e-08
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + D+ V I ESRDA FFE + H
Sbjct: 603 KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 655
Score = 26.2 bits (56), Expect(3) = 2e-08
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 147 LKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTE 10
+ E++V P+RSK R S+ DF P++ EA S +
Sbjct: 682 VSEEDVSEAPRRSKRQRTAKSFGNDFTVYHVDDTPKSISEAYASPD 727
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
Length = 1319
Score = 56.6 bits (135), Expect(2) = 2e-08
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
Y+LN+VP D+TPY +W GR PS ++ WG L K+ +P+ K+ +L PK
Sbjct: 628 YVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678
Score = 30.8 bits (68), Expect(2) = 2e-08
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + D+ V I ESRDA FFE + H
Sbjct: 678 KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730
>gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 764
Score = 56.6 bits (135), Expect(2) = 2e-08
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
++LN+VP D+TPY +W GR PS ++ WG LTK+ +P+ K+ +L PK
Sbjct: 52 HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLTKVNVPITKKRKLGPK 102
Score = 30.8 bits (68), Expect(2) = 2e-08
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + D+ V I ESRDA FFE + H
Sbjct: 102 KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 154
>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
Length = 1314
Score = 54.7 bits (130), Expect(2) = 2e-08
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
++LN+VP D+TPY +W GR PS ++ WG L K+ +P+ K+ +L PK
Sbjct: 600 HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 650
Score = 32.3 bits (72), Expect(2) = 2e-08
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + D+ V II ESRDA FFE + H
Sbjct: 650 KTVDCVFL-GYAHHSIAYRFLIVKSEVLDMHVGIIMESRDATFFESFFPMKDTH 702
>gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711758|gb|ABF99553.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1224
Score = 54.7 bits (130), Expect(2) = 2e-08
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
++LN+VP D+TPY +W GR PS ++ WG L K+ +P+ K+ +L PK
Sbjct: 550 HVLNRVPNRNKDKTPYKIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 600
Score = 32.3 bits (72), Expect(2) = 2e-08
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G ++ F + D+ V I ESRDA FFE + H
Sbjct: 600 KTVDCVFL-GYAHHIIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 652
>gb|ABA97460.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 786
Score = 52.4 bits (124), Expect(2) = 2e-08
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = -3
Query: 541 LVGGGSPLN*YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKP 362
+VG + ++LN+VP D+T Y +W GR PS ++ WG L K+ +P+ K+ +L P
Sbjct: 1 MVGDALLTSNHVLNRVPNRNKDKTAYEIWIGRKPSLSYLRTWGCLVKVNVPITKKRKLGP 60
Query: 361 K 359
K
Sbjct: 61 K 61
Score = 34.7 bits (78), Expect(2) = 2e-08
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + SD+ V II ESRDA FFE + H
Sbjct: 61 KTVDCVFL-GYAHHSIAYRFLIVKSEVSDMHVGIIMESRDATFFESFFPMKDTH 113
>gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108707933|gb|ABF95728.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1040
Score = 55.8 bits (133), Expect(2) = 3e-08
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
++LN+VP D+TPY +W GR PS ++ WG L K+ +P+ K+ +L PK
Sbjct: 581 HVLNRVPNKNKDKTPYEIWTGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 631
Score = 30.8 bits (68), Expect(2) = 3e-08
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + D+ V I ESRDA FFE + H
Sbjct: 631 KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 683
>emb|CAE01619.3| OSJNBa0042L16.8 [Oryza sativa Japonica Group]
Length = 1110
Score = 37.7 bits (86), Expect(4) = 3e-08
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPKML 353
++LNK+ + TP+ W + + ++ WG L K+ +P+ K+ +L P ++
Sbjct: 570 HVLNKIRMKHKEVTPFKEWERKKLNLSYLRTWGCLAKVNVPITKKRKLGPNIV 622
Score = 33.9 bits (76), Expect(4) = 3e-08
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 609 EHNNRILKEMIISMLISSGLPAALWGEAVL 520
E NR L EM+ +ML ++GL WGEAVL
Sbjct: 537 ERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 566
Score = 27.3 bits (59), Expect(4) = 3e-08
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 141 EDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPF 1
E++ V+ ++SK R+ S+ D+I L P+T +EA S + +
Sbjct: 701 EEDNIVDTRKSKRQRVTKSFGDDYIVYLVDDTPRTIEEAYSSPDADY 747
Score = 25.4 bits (54), Expect(4) = 3e-08
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 278 DIGVNIITESRDAEFFEHVYSKPVPH 201
D+ V I ESRDA FFE+ + P+ H
Sbjct: 647 DMHVGTIFESRDATFFENEF--PMKH 670
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 55.8 bits (133), Expect(2) = 4e-08
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = -3
Query: 511 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 359
++LN+VP D+TPY +W GR PS +++WG L K+ +P+ K+ +L PK
Sbjct: 628 HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPK 678
Score = 30.4 bits (67), Expect(2) = 4e-08
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -2
Query: 362 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 201
K VDCVF+ G + F + D+ V I ESRDA FFE + H
Sbjct: 678 KTVDCVFL-GYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKDTH 730