BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00013932
         (3277 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1299   0.0  
ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II su...  1288   0.0  
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...  1279   0.0  
ref|XP_011022252.1| PREDICTED: DNA-directed RNA polymerase II su...  1279   0.0  
ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II su...  1278   0.0  
gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium r...  1278   0.0  
ref|XP_012491467.1| PREDICTED: DNA-directed RNA polymerase II su...  1278   0.0  
ref|XP_012469269.1| PREDICTED: DNA-directed RNA polymerase II su...  1275   0.0  
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ...  1271   0.0  
ref|XP_011099129.1| PREDICTED: DNA-directed RNA polymerase II su...  1267   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  1265   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  1264   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  1264   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  1264   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  1264   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  1263   0.0  
ref|XP_010029631.1| PREDICTED: DNA-directed RNA polymerase II su...  1262   0.0  
ref|XP_012831470.1| PREDICTED: DNA-directed RNA polymerase II su...  1262   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  1262   0.0  
ref|XP_012067062.1| PREDICTED: DNA-directed RNA polymerase II su...  1261   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Vitis vinifera]
          Length = 1848

 Score = 1299 bits (3362), Expect = 0.0
 Identities = 632/671 (94%), Positives = 652/671 (97%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+Q+I+NPK+RL+K+LDACKNK+KC+GGDEI+ Q  D ++PVKKSRGGCGAQQPKLTI
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYKIQRKK DDPEQLPEPVERKQQL+AERVL+VLKRISDEDCILLGLNPKYAR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLRTSAWHSE+ETGFITPGDTQVRIE+GELL GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  619 bits (1595), Expect = e-174
 Identities = 305/337 (90%), Positives = 322/337 (95%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAKNEVK+LIR AQE+ LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693  TMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMDAVWIE+QKLDSLKMKK EFD+V+++E DD+NW P+YM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            +VEDLK IREFR+VFDAEV+KL  DR QLGTEI TTGDNSWPMPVNL+RLIWNAQKTFKV
Sbjct: 933  HVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSDMHPMEIVEA+DKLQERLKVVPGDD +SMEA
Sbjct: 993  DLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISMEA 1029


>ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nelumbo
            nucifera]
          Length = 1848

 Score = 1288 bits (3333), Expect = 0.0
 Identities = 628/671 (93%), Positives = 647/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEV+KVR VQFGILSPD IRQMSVVQIEHSETTE+GKPKPGGLSDTRLGTI
Sbjct: 1    MDTRFPYSPAEVSKVRRVQFGILSPDVIRQMSVVQIEHSETTEKGKPKPGGLSDTRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+QRI+NPK+RL+KVLDACKNKTKC+GGDEI+VQ +D  +P+KK RGGCGAQQPKLTI
Sbjct: 121  FKQAQRIRNPKNRLKKVLDACKNKTKCEGGDEIEVQGQDTGEPIKKRRGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQQL+AERVLSVLKRISDEDCILLGLNP+YAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCILLGLNPEYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            EDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L+RTSAWHSE+ETGFITPGDTQVRIERGELLTGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LMRTSAWHSESETGFITPGDTQVRIERGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  619 bits (1596), Expect = e-174
 Identities = 305/337 (90%), Positives = 322/337 (95%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAKNEVK+LIR AQE+ LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693  TMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMDAVWIE+QKLDSLKM+K EFDKV+R+E DD+NW P+YM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMRKSEFDKVFRYEIDDENWNPSYMLPE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            +VEDLK IREFR+VFDAEV+KL  DR QLGTEI TTGDN+WPMPVNL+RLIWNAQKTFKV
Sbjct: 933  HVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSDMHPMEIVEA+DKLQERLKVVPGDD +SMEA
Sbjct: 993  DLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEA 1029


>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
            [Populus trichocarpa] gi|550338614|gb|ERP60834.1|
            DNA-directed RNA polymerase II largest subunit family
            protein [Populus trichocarpa]
          Length = 1837

 Score = 1279 bits (3310), Expect = 0.0
 Identities = 622/671 (92%), Positives = 647/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSV+QIEHSETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK RL+K+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKLTI
Sbjct: 121  FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK+QRKK+DD EQLPEPVERKQ LTAERVLSVLKRISDEDC LLGL+PKYAR
Sbjct: 181  EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QER+GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTI+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L+RT+AWH ++E G ITPGDT VRIE+GELL+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  606 bits (1562), Expect = e-170
 Identities = 300/339 (88%), Positives = 318/339 (93%), Gaps = 2/339 (0%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TIS AKNEVKDLIR AQ K LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693  TMEKINETISNAKNEVKDLIRKAQNKELEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD+V+R+EFDD++W P YM +D
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTD 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            +VEDL+NIRE R VFDAEV+KL  DR QLGTEI TTGDN+WPMPVNL+RLIWNAQKTFK+
Sbjct: 933  HVEDLRNIRELRDVFDAEVQKLEADRYQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKI 992

Query: 113  DPR--RPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D R  R SD+HPME VEA+DKLQERLKVVPGDD +S+EA
Sbjct: 993  DTRIGRVSDIHPMEAVEAVDKLQERLKVVPGDDLLSVEA 1031


>ref|XP_011022252.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Populus
            euphratica]
          Length = 1837

 Score = 1279 bits (3309), Expect = 0.0
 Identities = 622/671 (92%), Positives = 646/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSV+QIEHSETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK RL+K+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKLTI
Sbjct: 121  FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK+QRKK DD EQLPEPVERKQ LTAERVLSVLKRISDEDC LLGL+PKYAR
Sbjct: 181  EGMKMIAEYKVQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QER+GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTI+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L+RT+AWH ++E G ITPGDT VRIE+GELL+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  603 bits (1556), Expect = e-169
 Identities = 299/339 (88%), Positives = 317/339 (93%), Gaps = 2/339 (0%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TIS AKNEVKDLIR AQ K LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693  TMEKINETISNAKNEVKDLIRKAQNKELEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD+V+R+EFDD++W P YM  D
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDRVFRYEFDDEDWNPTYMMPD 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            +VEDL+NIRE R VFDAEV+KL  DR QLGTEI TTGDN+WPMPVNL+RLIWNAQKTFK+
Sbjct: 933  HVEDLRNIRELRDVFDAEVQKLEADRYQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKI 992

Query: 113  DPR--RPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D R  R SD+HPME VEA+DKLQERLKVVPG+D +S+EA
Sbjct: 993  DTRIGRVSDIHPMEAVEAVDKLQERLKVVPGEDLLSVEA 1031


>ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X2
            [Gossypium raimondii]
          Length = 1832

 Score = 1278 bits (3307), Expect = 0.0
 Identities = 622/671 (92%), Positives = 646/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVVQIEHSETTERGKPK GGLSD RLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK+RL+K+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKLTI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKMIAEYK QRKK DDPEQLPEPVERKQ LTAERVLSVLKRISDEDC LLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTH LAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLRTSAWHSE+ETG ITPGDTQVRIE+GE+L+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGSITPGDTQVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  581 bits (1497), Expect = e-162
 Identities = 286/338 (84%), Positives = 314/338 (92%), Gaps = 1/338 (0%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAK++VK LI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SAQ
Sbjct: 693  TMEKINETISKAKDDVKQLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTP-NYMQS 297
            TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EFD+V+R++ DD+NW P +YM  
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFRYKIDDENWNPTSYMLP 932

Query: 296  DYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFK 117
            +++EDL+ I+E R VFDAEV KL  DR QLGTEI  TGD++WP+PVNL+RLIWNAQKTFK
Sbjct: 933  EHIEDLRTIQELRDVFDAEVNKLEADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFK 992

Query: 116  VDPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            VD RR SD+HP+EIV+++DKLQERLKVVPG D +S+EA
Sbjct: 993  VDFRRVSDLHPVEIVDSVDKLQERLKVVPGADPLSVEA 1030


>gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium raimondii]
          Length = 1809

 Score = 1278 bits (3307), Expect = 0.0
 Identities = 622/671 (92%), Positives = 646/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVVQIEHSETTERGKPK GGLSD RLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK+RL+K+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKLTI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKMIAEYK QRKK DDPEQLPEPVERKQ LTAERVLSVLKRISDEDC LLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTH LAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLRTSAWHSE+ETG ITPGDTQVRIE+GE+L+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGSITPGDTQVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  581 bits (1497), Expect = e-162
 Identities = 286/338 (84%), Positives = 314/338 (92%), Gaps = 1/338 (0%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAK++VK LI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SAQ
Sbjct: 693  TMEKINETISKAKDDVKQLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTP-NYMQS 297
            TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EFD+V+R++ DD+NW P +YM  
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFRYKIDDENWNPTSYMLP 932

Query: 296  DYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFK 117
            +++EDL+ I+E R VFDAEV KL  DR QLGTEI  TGD++WP+PVNL+RLIWNAQKTFK
Sbjct: 933  EHIEDLRTIQELRDVFDAEVNKLEADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFK 992

Query: 116  VDPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            VD RR SD+HP+EIV+++DKLQERLKVVPG D +S+EA
Sbjct: 993  VDFRRVSDLHPVEIVDSVDKLQERLKVVPGADPLSVEA 1030


>ref|XP_012491467.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X1
            [Gossypium raimondii] gi|823191464|ref|XP_012491468.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1
            isoform X1 [Gossypium raimondii]
            gi|823191467|ref|XP_012491470.1| PREDICTED: DNA-directed
            RNA polymerase II subunit 1 isoform X1 [Gossypium
            raimondii] gi|823191470|ref|XP_012491471.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1 isoform X1
            [Gossypium raimondii] gi|763776132|gb|KJB43255.1|
            hypothetical protein B456_007G190500 [Gossypium
            raimondii] gi|763776133|gb|KJB43256.1| hypothetical
            protein B456_007G190500 [Gossypium raimondii]
            gi|763776135|gb|KJB43258.1| hypothetical protein
            B456_007G190500 [Gossypium raimondii]
          Length = 1846

 Score = 1278 bits (3307), Expect = 0.0
 Identities = 622/671 (92%), Positives = 646/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVVQIEHSETTERGKPK GGLSD RLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK+RL+K+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKLTI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKMIAEYK QRKK DDPEQLPEPVERKQ LTAERVLSVLKRISDEDC LLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTH LAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLRTSAWHSE+ETG ITPGDTQVRIE+GE+L+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGSITPGDTQVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  581 bits (1497), Expect = e-162
 Identities = 286/338 (84%), Positives = 314/338 (92%), Gaps = 1/338 (0%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAK++VK LI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SAQ
Sbjct: 693  TMEKINETISKAKDDVKQLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTP-NYMQS 297
            TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EFD+V+R++ DD+NW P +YM  
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFRYKIDDENWNPTSYMLP 932

Query: 296  DYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFK 117
            +++EDL+ I+E R VFDAEV KL  DR QLGTEI  TGD++WP+PVNL+RLIWNAQKTFK
Sbjct: 933  EHIEDLRTIQELRDVFDAEVNKLEADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFK 992

Query: 116  VDPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            VD RR SD+HP+EIV+++DKLQERLKVVPG D +S+EA
Sbjct: 993  VDFRRVSDLHPVEIVDSVDKLQERLKVVPGADPLSVEA 1030


>ref|XP_012469269.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Gossypium
            raimondii] gi|763750176|gb|KJB17564.1| hypothetical
            protein B456_003G005700 [Gossypium raimondii]
            gi|763750177|gb|KJB17565.1| hypothetical protein
            B456_003G005700 [Gossypium raimondii]
            gi|763750178|gb|KJB17566.1| hypothetical protein
            B456_003G005700 [Gossypium raimondii]
            gi|763750179|gb|KJB17567.1| hypothetical protein
            B456_003G005700 [Gossypium raimondii]
          Length = 1847

 Score = 1275 bits (3299), Expect = 0.0
 Identities = 618/671 (92%), Positives = 646/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSDTRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHSETTERGKPKVGGLSDTRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCSK+LADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKVLADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK+RL+K+LDACKNKTKC+GGDEIDVQ +D E+P+KKSRGGCGAQQPKL+I
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDTEEPIKKSRGGCGAQQPKLSI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVLSVLKRISDEDC LLGLNPKYAR
Sbjct: 181  DGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTH LAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGD+VLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV ELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVAELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L+RTSAWHSE+ETGFITPGDTQVRIE+GE+L+GTLCKKALG+S GSLIHVIWEEVGPDAA
Sbjct: 601  LMRTSAWHSESETGFITPGDTQVRIEKGEVLSGTLCKKALGSSAGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  579 bits (1493), Expect = e-162
 Identities = 284/338 (84%), Positives = 313/338 (92%), Gaps = 1/338 (0%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAK +VK LI  AQ K LEPEPGRTMM+SFEN+VNQVLNKARDDAG+SAQ
Sbjct: 693  TMEKINETISKAKEDVKQLIIKAQNKDLEPEPGRTMMDSFENKVNQVLNKARDDAGNSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF+DRTLPHFTKDD+GP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDFGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTP-NYMQS 297
            TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EFD+V+R++ DD+NW P +YM  
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKTEFDRVFRYKIDDENWNPTSYMLP 932

Query: 296  DYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFK 117
            +++EDL+ I+E R VFDAEV KL  DR QLGTEI  TGD++WP+PVNL+RLIWNAQKTFK
Sbjct: 933  EHIEDLRTIQELRDVFDAEVNKLEADRCQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFK 992

Query: 116  VDPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            VD RR SD+HP+EIV+++DKLQERLKVVPG D +S+EA
Sbjct: 993  VDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEA 1030


>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|590702285|ref|XP_007046586.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score = 1271 bits (3290), Expect = 0.0
 Identities = 619/671 (92%), Positives = 644/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSD RLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEE+HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK+RL+K+LDACKNK+KC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKL+I
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKMIAEYK QRK+ DD EQLPEPVERKQ LTAERVLSVLKRISDEDC LLGLNPK+AR
Sbjct: 181  DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTH LAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLR SAWHSE ETGFITPGDTQVRIE+GELL+GTLCKKALGTS+GSLIHVIWEEVGPDAA
Sbjct: 601  LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  577 bits (1488), Expect = e-161
 Identities = 284/338 (84%), Positives = 314/338 (92%), Gaps = 1/338 (0%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAK EVK+LI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SAQ
Sbjct: 693  TMEKINETISKAKEEVKNLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTP-NYMQS 297
            TVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD+V+R+  DD++W P +YM  
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYMLP 932

Query: 296  DYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFK 117
            +++EDL+ I+E R VF+AEV+KL  DR QLGTEI  TGD++WP+PVNL+RLIWNAQKTFK
Sbjct: 933  EHIEDLRTIQELRDVFEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFK 992

Query: 116  VDPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            VD RR SD+HP+EIV+++DKLQERLKVVPG D +S+EA
Sbjct: 993  VDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEA 1030


>ref|XP_011099129.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Sesamum indicum]
          Length = 1848

 Score = 1267 bits (3278), Expect = 0.0
 Identities = 611/671 (91%), Positives = 646/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFP+SPAEVAK+R+VQFGILSPDEIRQMSVV IEHSETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDLRFPYSPAEVAKIRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETC ANMA+CPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADEED K
Sbjct: 61   DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRCVCFNCSKILADEEDPK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ RI+NPK+RL+K+LDACKNK+KC+GGDEIDVQ +D ++PVKK+RGGCGAQQPK++I
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTDEPVKKTRGGCGAQQPKISI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKM+AEYKIQ+KK DDPEQ+PEPVERKQQL+AE+VLS+LKRI+DEDC LLGLNPKYAR
Sbjct: 181  DGMKMVAEYKIQKKKNDDPEQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH+IKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHKIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLR SAWH E+E GFITPGDTQVRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LLRYSAWHQESEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  594 bits (1531), Expect = e-166
 Identities = 296/337 (87%), Positives = 313/337 (92%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TIS AKNEVK+LIR AQEK LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693  TMEKINETISNAKNEVKELIRAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMDAVWIESQ L+SLK+KK +F+ +YR+E D+ NW PNYM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKADFNDMYRYEIDNANWNPNYMLPE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
             VEDLK IRE R VFDAEV+KL  DR QLGTEI TTGDNSWP+PVN+RRL+ NAQKTFKV
Sbjct: 933  AVEDLKTIREIRSVFDAEVQKLEADRYQLGTEIATTGDNSWPLPVNIRRLVLNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSDMHPMEIVEA+DKLQERLKVV GDD +SMEA
Sbjct: 993  DFRRPSDMHPMEIVEAVDKLQERLKVVVGDDYLSMEA 1029


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 1265 bits (3274), Expect = 0.0
 Identities = 613/671 (91%), Positives = 641/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +IKNPK+RL+K+LDACKNKTKC+GGD+IDV  +D ++PVKKSRGGCGAQQP++TI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISD+DC LLG NPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+KQE+ GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L+RT+AWHS++E G ITPGDT VRIE+GELL+GT+CKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  607 bits (1566), Expect = e-170
 Identities = 297/337 (88%), Positives = 316/337 (93%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TIS AKN VK+LIR AQ K LEP+PGRTMMESFEN VNQVLN+ARDDAGSSAQ
Sbjct: 693  TMEKINETISNAKNAVKELIRKAQNKELEPKPGRTMMESFENEVNQVLNRARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EFD+V+++E DD+NW P YM  D
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPTYMYQD 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            +++DLKNIRE R VFDAEV+KL  DR QLGTEI TTGD+SWP+PVNLRRLIWNAQKTFKV
Sbjct: 933  HIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSD+HPME VEA+DKLQERLKVVPGDD +S+EA
Sbjct: 993  DKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA 1029


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 1264 bits (3270), Expect = 0.0
 Identities = 615/671 (91%), Positives = 640/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV  +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  603 bits (1555), Expect = e-169
 Identities = 292/337 (86%), Positives = 317/337 (94%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TME INDTISKAKN VK+LI+ AQ+KSLEPEPGRTMMESFEN+VNQVLN ARD+AGSSAQ
Sbjct: 693  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFDK +RFE D++NW PNYM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            Y++DLK I+E R VFDAEV+KL  DR QL TEI T+GD+SWP+PVNL+RLIWNAQKTFKV
Sbjct: 933  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            DPRRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EA
Sbjct: 993  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1029


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 1264 bits (3270), Expect = 0.0
 Identities = 615/671 (91%), Positives = 640/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV  +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  603 bits (1555), Expect = e-169
 Identities = 292/337 (86%), Positives = 317/337 (94%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TME INDTISKAKN VK+LI+ AQ+KSLEPEPGRTMMESFEN+VNQVLN ARD+AGSSAQ
Sbjct: 693  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFDK +RFE D++NW PNYM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            Y++DLK I+E R VFDAEV+KL  DR QL TEI T+GD+SWP+PVNL+RLIWNAQKTFKV
Sbjct: 933  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            DPRRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EA
Sbjct: 993  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1029


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 1264 bits (3270), Expect = 0.0
 Identities = 615/671 (91%), Positives = 640/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV  +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  603 bits (1555), Expect = e-169
 Identities = 292/337 (86%), Positives = 317/337 (94%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TME INDTISKAKN VK+LI+ AQ+KSLEPEPGRTMMESFEN+VNQVLN ARD+AGSSAQ
Sbjct: 693  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFDK +RFE D++NW PNYM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            Y++DLK I+E R VFDAEV+KL  DR QL TEI T+GD+SWP+PVNL+RLIWNAQKTFKV
Sbjct: 933  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            DPRRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EA
Sbjct: 993  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1029


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 1264 bits (3270), Expect = 0.0
 Identities = 615/671 (91%), Positives = 640/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV  +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  603 bits (1555), Expect = e-169
 Identities = 292/337 (86%), Positives = 317/337 (94%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TME INDTISKAKN VK+LI+ AQ+KSLEPEPGRTMMESFEN+VNQVLN ARD+AGSSAQ
Sbjct: 693  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFDK +RFE D++NW PNYM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            Y++DLK I+E R VFDAEV+KL  DR QL TEI T+GD+SWP+PVNL+RLIWNAQKTFKV
Sbjct: 933  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            DPRRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EA
Sbjct: 993  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1029


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 615/671 (91%), Positives = 639/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV  +D E+P+KK +GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  603 bits (1555), Expect = e-169
 Identities = 292/337 (86%), Positives = 317/337 (94%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TME INDTISKAKN VK+LI+ AQ+KSLEPEPGRTMMESFEN+VNQVLN ARD+AGSSAQ
Sbjct: 693  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFDK +RFE D++NW PNYM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            Y++DLK I+E R VFDAEV+KL  DR QL TEI T+GD+SWP+PVNL+RLIWNAQKTFKV
Sbjct: 933  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            DPRRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EA
Sbjct: 993  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1029


>ref|XP_010029631.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Eucalyptus
            grandis] gi|629090320|gb|KCW56573.1| hypothetical protein
            EUGRSUZ_I02304 [Eucalyptus grandis]
          Length = 1852

 Score = 1262 bits (3266), Expect = 0.0
 Identities = 613/671 (91%), Positives = 639/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVVQIEH ETTERGKPK  GLSD RLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVQIEHGETTERGKPKIAGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCSKIL DE+DHK
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILTDEDDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ RI+NPK+RL+K+LDACKNK+KCDGGD++D + +  E+P KK+ GGCGAQQPKLTI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCDGGDDVDTKGQGSEEPKKKNHGGCGAQQPKLTI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD +Q+PEPVERKQ L+AERVLSVLKRISDE C LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQDQIPEPVERKQTLSAERVLSVLKRISDEHCQLLGLNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRQQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMN+LMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNVLMWWEDFDGKVPTPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLR SAWHSE ETGFITPGDTQVRIE+GELL+GTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  593 bits (1530), Expect = e-166
 Identities = 291/337 (86%), Positives = 316/337 (93%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TIS AK+EVK LI+ AQEK LEPEPGRTMMESFEN+VNQVLNKARDDAGSSAQ
Sbjct: 693  TMEKINETISSAKDEVKRLIKDAQEKKLEPEPGRTMMESFENKVNQVLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GFI RTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIGRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EFD+V+R+E DD+NW P+YM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKTEFDRVFRYEIDDENWNPDYMLPE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
              EDL++I E R VFDAEV+KL  DR QLGTEI TTGDN+WP+PVNL+RLIWNAQKTFK+
Sbjct: 933  NAEDLRSIGELRDVFDAEVQKLEADRYQLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKI 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSD+HP+E+VEAIDKLQERLKVVPG+D +S+EA
Sbjct: 993  DLRRPSDIHPVEVVEAIDKLQERLKVVPGEDPLSVEA 1029


>ref|XP_012831470.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Erythranthe
            guttatus] gi|604343422|gb|EYU42342.1| hypothetical
            protein MIMGU_mgv1a000091mg [Erythranthe guttata]
          Length = 1842

 Score = 1262 bits (3265), Expect = 0.0
 Identities = 612/671 (91%), Positives = 643/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSD RLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKIVLSI+RCVCFNCSKILADEE+ K
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKIVLSILRCVCFNCSKILADEEEPK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ RI+NPK+RLRK+LDACKNKTKCDGGDEID   +D E+PVKKSRGGCGAQQPK++I
Sbjct: 121  FKQAMRIRNPKNRLRKILDACKNKTKCDGGDEIDGHSQDTEEPVKKSRGGCGAQQPKISI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKM+AEYK+Q+KK+DD +Q+PEPVERKQQL+AE+VLS+LKRI+DEDC LLGLNPK+AR
Sbjct: 181  DGMKMVAEYKLQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKFAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTSARSEDDLTHQLAMIIRHNENL++QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLR SAWH E E GFITPGDTQVRIE+GELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LLRYSAWHQETEKGFITPGDTQVRIEKGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  592 bits (1526), Expect = e-166
 Identities = 293/337 (86%), Positives = 312/337 (92%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TIS AKNEVK+LIR AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693  TMEKINETISNAKNEVKELIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMDAVWIESQ L+SLK+KK +F+ +Y++E D+ NW PNYM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYKYEIDNSNWNPNYMLPE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
             VEDLK IRE R VFDAEV KL  DR QLGTEI TTGDNSWP+PVN++RL+ NAQKTFKV
Sbjct: 933  AVEDLKTIREIRSVFDAEVTKLEVDRFQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSDMHPMEIVEA+DKLQERLKVV GDD +S EA
Sbjct: 993  DFRRPSDMHPMEIVEAVDKLQERLKVVVGDDYLSTEA 1029


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 1262 bits (3265), Expect = 0.0
 Identities = 606/671 (90%), Positives = 646/671 (96%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADE+D K
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ RI+NPK+RLRK+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPK++I
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            +GMKM+AEYK+Q+KK+DDPEQ+PEPVERKQQL+AERVLS+LKR+SDEDC+LLGLNP++AR
Sbjct: 181  DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQ L        PSVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNGAPAHIIS
Sbjct: 241  PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            LLR SAWH+++E G+ITPGDTQVRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  584 bits (1505), Expect = e-163
 Identities = 290/337 (86%), Positives = 310/337 (91%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TIS AK +VK+LI+ AQEK LE EPGRTMMESFENRVNQVLNKARDDAGSSA+
Sbjct: 693  TMEKINETISNAKAKVKELIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAE 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLGDVIQFLYGEDGMD+VWIE+QKLDSLK KK  FD +Y +E DD NW P+YM  +
Sbjct: 873  TVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPE 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
             VEDLK IRE R VFDAEV+KL  DR QLGTEI  TGDNSWP+PVN++RL+ NAQKTFK+
Sbjct: 933  AVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKI 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSDMHPMEIVEA+DKLQERLKVVPGDD +SMEA
Sbjct: 993  DFRRPSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEA 1029


>ref|XP_012067062.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Jatropha
            curcas] gi|802563759|ref|XP_012067063.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1-like [Jatropha
            curcas]
          Length = 1843

 Score = 1261 bits (3264), Expect = 0.0
 Identities = 614/671 (91%), Positives = 639/671 (95%)
 Frame = -1

Query: 3100 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 2921
            MD RFPFSPAEVAKVRMVQFGILS DEIRQMSVVQIE+SETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVAKVRMVQFGILSADEIRQMSVVQIEYSETTERGKPKPGGLSDPRLGTI 60

Query: 2920 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 2741
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 2740 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 2561
            FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGD+IDVQ +D  +PVKKSRGGCGAQQPK++I
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDDIDVQGKDTGEPVKKSRGGCGAQQPKISI 180

Query: 2560 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 2381
            EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLG NPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQLLTAERVLGVLKRISDEDCQLLGFNPKYAR 240

Query: 2380 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 2201
            PDWMILQVL        PSVMMDTSARSEDDLTHQLAM+IRHNENLRKQER GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMVIRHNENLRKQERGGAPAHIIS 300

Query: 2200 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2021
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 2020 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1841
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1840 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1661
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1660 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1481
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1480 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 1301
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1300 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 1121
            L+RT+AWH++ + G ITPGDT VRIE+GELL+GTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHTDTDRGIITPGDTLVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660

Query: 1120 RKFLGHTQWLV 1088
            RKFLGHTQWLV
Sbjct: 661  RKFLGHTQWLV 671



 Score =  604 bits (1557), Expect = e-169
 Identities = 299/337 (88%), Positives = 313/337 (92%)
 Frame = -3

Query: 1013 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 834
            TMEKIN+TISKAKNEVKD IR AQ K LE EPGRTMMESFEN+VNQ LNKARDDAGSSAQ
Sbjct: 693  TMEKINETISKAKNEVKDHIRKAQNKELEAEPGRTMMESFENKVNQTLNKARDDAGSSAQ 752

Query: 833  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 654
            KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP
Sbjct: 753  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGP 812

Query: 653  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 474
            ESRGFVENSYLRGLTPQEFFFHAMGG EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG
Sbjct: 813  ESRGFVENSYLRGLTPQEFFFHAMGGWEGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 872

Query: 473  TVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSD 294
            TVRNSLG VIQFLYGEDGMDAVWIESQKLDSLKMKK EFD+V+R+E DD NW P+YM  D
Sbjct: 873  TVRNSLGVVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRVFRYEIDDKNWNPSYMMPD 932

Query: 293  YVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKV 114
            ++EDLKNIRE R VFDAEV+KL  DR QLGTEI TTGDNSWP+PVNL RLIWNAQKTFKV
Sbjct: 933  HIEDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDNSWPLPVNLMRLIWNAQKTFKV 992

Query: 113  DPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEA 3
            D RRPSD+HPME VEA+DKLQERLKVVPGDD +S+EA
Sbjct: 993  DTRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA 1029