BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00008849
         (3852 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010246063.1| PREDICTED: DNA-directed RNA polymerase V sub...  1443   0.0  
emb|CBI40152.3| unnamed protein product [Vitis vinifera]             1391   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase V sub...  1391   0.0  
ref|XP_012068654.1| PREDICTED: DNA-directed RNA polymerase V sub...  1366   0.0  
gb|KDP40529.1| hypothetical protein JCGZ_24528 [Jatropha curcas]     1366   0.0  
ref|XP_011655250.1| PREDICTED: DNA-directed RNA polymerase V sub...  1353   0.0  
ref|XP_008465860.1| PREDICTED: DNA-directed RNA polymerase V sub...  1350   0.0  
ref|XP_008231662.1| PREDICTED: DNA-directed RNA polymerase V sub...  1348   0.0  
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...  1348   0.0  
ref|XP_009361958.1| PREDICTED: DNA-directed RNA polymerase V sub...  1337   0.0  
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...  1325   0.0  
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...  1325   0.0  
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...  1325   0.0  
emb|CDP18669.1| unnamed protein product [Coffea canephora]           1324   0.0  
ref|XP_011020393.1| PREDICTED: DNA-directed RNA polymerase V sub...  1321   0.0  
ref|XP_012449584.1| PREDICTED: DNA-directed RNA polymerase V sub...  1319   0.0  
gb|KJB67889.1| hypothetical protein B456_010G216600 [Gossypium r...  1319   0.0  
gb|KJB67888.1| hypothetical protein B456_010G216600 [Gossypium r...  1319   0.0  
ref|XP_012449583.1| PREDICTED: DNA-directed RNA polymerase V sub...  1319   0.0  
gb|KJB67890.1| hypothetical protein B456_010G216600 [Gossypium r...  1316   0.0  

>ref|XP_010246063.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Nelumbo nucifera]
            gi|720093477|ref|XP_010246064.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Nelumbo nucifera]
            gi|720093480|ref|XP_010246066.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Nelumbo nucifera]
          Length = 1908

 Score = 1443 bits (3736), Expect = 0.0
 Identities = 731/1130 (64%), Positives = 880/1130 (77%), Gaps = 11/1130 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            RK  KQ EII+SSRSG PNFES E+EANELQS +A YLHVRG+ K  R + ++F V+   
Sbjct: 245  RKVLKQIEIIRSSRSGAPNFESQEIEANELQSTVANYLHVRGTAKASRDVDTRFSVSKGV 304

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            +DT  KAW+EKM+TLFISKGSGFSSRSVITGDAYK ++EIGLPSE+AQ+ITFEEKV++HN
Sbjct: 305  NDTCTKAWLEKMRTLFISKGSGFSSRSVITGDAYKGINEIGLPSEVAQRITFEEKVSIHN 364

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M+HLQ+LVD KLCLTY DG S YSL++GSKG+TSL+VGQVV RRIMDGDIVFINRPPSTH
Sbjct: 365  MDHLQKLVDNKLCLTYTDGLSTYSLRDGSKGYTSLRVGQVVRRRIMDGDIVFINRPPSTH 424

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQAFSVY+HD+HTVK+NPLIC PLGADFDGDC+HLFYPQSL AK+EVLELF+V+ QL
Sbjct: 425  KHSLQAFSVYVHDDHTVKVNPLICGPLGADFDGDCVHLFYPQSLEAKSEVLELFAVQHQL 484

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLAND+LLSL I+FK++F  KA++QQL M+V  GL  PALLKA    P W
Sbjct: 485  LSSHSGNLNLQLANDSLLSLNILFKRFFFDKASSQQLGMFVPMGLPQPALLKAHHDDPVW 544

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ ALP+ FD S  RY+I QSEI+KFD+N+D +Q+ FN+IIN+V  +KGS++AL 
Sbjct: 545  TALQILQTALPSCFDSSERRYLISQSEILKFDFNKDALQTSFNEIINSVLFQKGSKEALN 604

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
            V NSLQPLLME++FS G+SVSL+DF IP+++T EL K V+ I PLL+HLRS YNE+VELQ
Sbjct: 605  VVNSLQPLLMEHIFSVGFSVSLKDFSIPRAVTEELHKMVEVILPLLHHLRSEYNEMVELQ 664

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            VENHLR VKVPVV FILKSS LGNLIDSKS+SSINKVV           DRG++Y+RTLV
Sbjct: 665  VENHLRIVKVPVVKFILKSSILGNLIDSKSDSSINKVVQQVGFLGLQFSDRGKLYSRTLV 724

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            E +T+FF+ K+ V+      E+FGLI SCFF+GLNPYE+LV SISSREVLVRSSRGLTEP
Sbjct: 725  EALTSFFRSKYCVNRDGESPESFGLISSCFFNGLNPYEELVHSISSREVLVRSSRGLTEP 784

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN C+NS+IQF+Y  + G    SF PAGEPVG+LAATA
Sbjct: 785  GTLFKNLMAILRDVVICYDGTVRNVCNNSLIQFEYGADLGNTPPSFYPAGEPVGILAATA 844

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            ISNPAYKAVLD       SWELMKEI+LC+ + KNDL DRR ILYLNDC CG  YCKE A
Sbjct: 845  ISNPAYKAVLDSSPSNNSSWELMKEILLCRASFKNDLIDRRVILYLNDCGCGGYYCKEKA 904

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY VQNHLKR +L  IA  F ++Y+KQ     N  TNA LVGHIHLD+  +K + R++  
Sbjct: 905  AYIVQNHLKRVSLMDIAVDFSIKYQKQCIFPGNSVTNAGLVGHIHLDKMSLKALNRSMAD 964

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAESSQVPCLQFSWQDTSACT 1019
            IL+ CQE + S +KKKD+LG ILR + L  SECC    PD E S+ PCLQF W+DTS+ +
Sbjct: 965  ILKDCQETLNSFRKKKDQLGHILRRVLLLVSECCSVRLPDKERSEFPCLQFLWEDTSSDS 1024

Query: 1018 LEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXXX 839
            +++ S++MAN +C ILL T +KGDP+V  ANI+W +PD  SWVR P KIQ G        
Sbjct: 1025 IQRISKIMANKVCPILLGTNIKGDPQVLSANIMWTSPDVCSWVRNPCKIQNGELVLEVVV 1084

Query: 838  XXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTSI 659
                 K+ GD WR V++SCLPVIHL+DTRRSIPYGIKQ+QE++GISCAFDQAV+RL++S+
Sbjct: 1085 DKAAVKRTGDAWRVVLNSCLPVIHLVDTRRSIPYGIKQIQELLGISCAFDQAVQRLSSSV 1144

Query: 658  RMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFEK 479
            RMV KGVLKEHLIL ANSMTCTGN+IGFN+GGYKAL RSLNV +PFTEATLFTPRKCFEK
Sbjct: 1145 RMVTKGVLKEHLILAANSMTCTGNMIGFNSGGYKALLRSLNVHVPFTEATLFTPRKCFEK 1204

Query: 478  AAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQNA-VDIYNFLQIVRTG 302
            AA+KCH+DSLSS VASCS+GK V VGTGA+FEILWN KEMG++Q+  +D+Y+FLQ+VR G
Sbjct: 1205 AAQKCHMDSLSSIVASCSWGKHVTVGTGAQFEILWNNKEMGVNQDGEIDVYDFLQLVR-G 1263

Query: 301  TKEGEVISGCLGEEVDDMELENDYVELPLSPE-HPDGGKATFDDIAEFEPNLQPSQISEG 125
            + EG+  + CLG+E+DD+ELEN+  EL LSP  +    K  FDD            + E 
Sbjct: 1264 SNEGDSFTTCLGQEIDDLELENEERELSLSPNVNTCFNKPVFDD---------NGCLGED 1314

Query: 124  NWGNNSSQTGESG---------GWGEWKVDKTSGSENPGAASNSDAWAGW 2
            +WG  + + G +G         G  +W++     +     AS      GW
Sbjct: 1315 SWGKQAEKEGINGWDKNEKQPEGGQQWELHSWDTNMEQKQASQPKGSLGW 1364



 Score =  196 bits (498), Expect = 1e-46
 Identities = 93/160 (58%), Positives = 121/160 (75%), Gaps = 3/160 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQIRKNG--EKDKSSACTHCLDMPPITVRE 3679
            LP+P+YHP H+ ELK +L +ICLKCLRMK  ++++    E+  S+ C++C D+P ++++E
Sbjct: 78   LPVPIYHPCHVSELKHILDLICLKCLRMKMRKVKETSGTERSSSAPCSYCPDLPQLSIKE 137

Query: 3678 SNVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETK 3502
                DG+  LELK+  +S+ ++  WNFLERYGF YG    RTLLP E LEILKRIP ET+
Sbjct: 138  VKTTDGACYLELKISSRSRSQDGFWNFLERYGFRYGDGSQRTLLPSESLEILKRIPEETR 197

Query: 3501 KKLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            +KL  KG+FPQ GYILQ LPVPPNCLSVPDISDG +IMSS
Sbjct: 198  RKLIGKGHFPQYGYILQYLPVPPNCLSVPDISDGISIMSS 237


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 1391 bits (3600), Expect = 0.0
 Identities = 700/1131 (61%), Positives = 865/1131 (76%), Gaps = 15/1131 (1%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ E+IK SRSG PNFESH++EAN LQS+I QYL VRG+ K  R + ++F  + E 
Sbjct: 300  KKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEP 359

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            +++S KAW+EKM+TLFI KGSGFSSRSVITGDAYKRV+EIGLP EIAQ+ITFEE+V VHN
Sbjct: 360  NESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHN 419

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M HLQ LVD+KLCLTYRDG S YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 420  MKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 479

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDC+HLFYPQSL AKAEVLELFSVE+QL
Sbjct: 480  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQL 539

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLA D+LLSLK++F++YFL KA AQQL M+VS  L  PALLK+    P W
Sbjct: 540  LSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCW 599

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ ALP+ FDC GER+ I +S I+K DYNRDV+QS+ N+I+ ++F +KG  + L+
Sbjct: 600  TALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLK 659

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+FSEG+SVSLEDF IP  +T+ ++KNV+ IS LLY+LRS YNE+++LQ
Sbjct: 660  FFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQ 719

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
             ENHLR  KVPV NFIL SS LGNLIDSKS+S+INKVV           ++G+ Y+RTLV
Sbjct: 720  AENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLV 779

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            E M   F+ K+   G D PS  FGLIRSCFFHGL+PYE++V SIS+RE++VRSSRGL+EP
Sbjct: 780  EGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEP 839

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQF+Y V+  T+ + F PAGEPVGVLAATA
Sbjct: 840  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATA 899

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LC+VN KNDL DRR ILYLNDC CG+KYC+ENA
Sbjct: 900  MSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENA 959

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+N LK+ +LK  A  F++EY KQ     + +    LVGHIHL++  ++ +  ++ +
Sbjct: 960  AYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQE 1019

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPP-DAESSQVPCLQFSWQDTSAC 1022
            + Q+C+E I S +KKK+ +G   + + LS  ECC F     ++ S +PCL F WQ     
Sbjct: 1020 VCQKCEETINSFRKKKN-VGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDD 1078

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             LEQ   ++A+ IC +LL+TI+KGD RV   NI+W++PDTT+W+R P K +KG       
Sbjct: 1079 NLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIV 1138

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ GD WR V+D+CLPV+HLIDTRRSIPY IKQ+QE++GISCAFDQAV+RL+ S
Sbjct: 1139 LEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKS 1198

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MVAKGVLKEHLIL+ANSMTC GNLIGFN+GGYKAL R+LN+Q+PFTEATLFTPRKCFE
Sbjct: 1199 VTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFE 1258

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQN-AVDIYNFLQIVRT 305
            KA+EKCH DSLSS VASCS+GK V VGTG+RF++LW+ KE+G  Q+  +DIY+FL +VR+
Sbjct: 1259 KASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRS 1318

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQPSQI-- 134
            G+   E  + CLG EV+D+ LE++ +EL +SPEH     K  F+D AEF+ N   + +  
Sbjct: 1319 GSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQ-NTWENHVPG 1377

Query: 133  SEGNWGNN-----SSQTGESGGWGEWKVDK-----TSGSENPGAASNSDAW 11
            S G+W  N     ++ T +   W  W  DK     T  +  P  +S S  W
Sbjct: 1378 SGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGW 1428



 Score =  146 bits (368), Expect(2) = 7e-32
 Identities = 73/132 (55%), Positives = 96/132 (72%), Gaps = 1/132 (0%)
 Frame = -1

Query: 3774 RMKKGQIRKNGEKDKSSACTHCLDMPPITVRESNVKDGSFCLELKVP-KSKLRENMWNFL 3598
            R++  ++  NG  ++  A   C D P ++VRE    +G+  LELK+P +S+ ++  W+FL
Sbjct: 162  RIQTDKVTNNGITEQLLAPC-CQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFL 220

Query: 3597 ERYGFIYGYEECRTLLPCEVLEILKRIPAETKKKLAAKGYFPQDGYILQKLPVPPNCLSV 3418
             RYG+ YG+   R LLP EV+EIL+RIP +T+KKL  KGYFPQDGYILQ LPVPPNCLSV
Sbjct: 221  ARYGYRYGHNLSRILLPSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSV 280

Query: 3417 PDISDGTTIMSS 3382
            PDISDG +IMSS
Sbjct: 281  PDISDGVSIMSS 292



 Score = 22.3 bits (46), Expect(2) = 7e-32
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D SVSMLKKVLK
Sbjct: 293  DLSVSMLKKVLK 304


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Vitis vinifera]
            gi|731435545|ref|XP_010645605.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 1391 bits (3600), Expect = 0.0
 Identities = 700/1131 (61%), Positives = 865/1131 (76%), Gaps = 15/1131 (1%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ E+IK SRSG PNFESH++EAN LQS+I QYL VRG+ K  R + ++F  + E 
Sbjct: 240  KKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEP 299

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            +++S KAW+EKM+TLFI KGSGFSSRSVITGDAYKRV+EIGLP EIAQ+ITFEE+V VHN
Sbjct: 300  NESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHN 359

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M HLQ LVD+KLCLTYRDG S YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 360  MKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 419

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDC+HLFYPQSL AKAEVLELFSVE+QL
Sbjct: 420  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQL 479

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLA D+LLSLK++F++YFL KA AQQL M+VS  L  PALLK+    P W
Sbjct: 480  LSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCW 539

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ ALP+ FDC GER+ I +S I+K DYNRDV+QS+ N+I+ ++F +KG  + L+
Sbjct: 540  TALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLK 599

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+FSEG+SVSLEDF IP  +T+ ++KNV+ IS LLY+LRS YNE+++LQ
Sbjct: 600  FFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQ 659

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
             ENHLR  KVPV NFIL SS LGNLIDSKS+S+INKVV           ++G+ Y+RTLV
Sbjct: 660  AENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLV 719

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            E M   F+ K+   G D PS  FGLIRSCFFHGL+PYE++V SIS+RE++VRSSRGL+EP
Sbjct: 720  EGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEP 779

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQF+Y V+  T+ + F PAGEPVGVLAATA
Sbjct: 780  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATA 839

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LC+VN KNDL DRR ILYLNDC CG+KYC+ENA
Sbjct: 840  MSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENA 899

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+N LK+ +LK  A  F++EY KQ     + +    LVGHIHL++  ++ +  ++ +
Sbjct: 900  AYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQE 959

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPP-DAESSQVPCLQFSWQDTSAC 1022
            + Q+C+E I S +KKK+ +G   + + LS  ECC F     ++ S +PCL F WQ     
Sbjct: 960  VCQKCEETINSFRKKKN-VGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDD 1018

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             LEQ   ++A+ IC +LL+TI+KGD RV   NI+W++PDTT+W+R P K +KG       
Sbjct: 1019 NLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIV 1078

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ GD WR V+D+CLPV+HLIDTRRSIPY IKQ+QE++GISCAFDQAV+RL+ S
Sbjct: 1079 LEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKS 1138

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MVAKGVLKEHLIL+ANSMTC GNLIGFN+GGYKAL R+LN+Q+PFTEATLFTPRKCFE
Sbjct: 1139 VTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFE 1198

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQN-AVDIYNFLQIVRT 305
            KA+EKCH DSLSS VASCS+GK V VGTG+RF++LW+ KE+G  Q+  +DIY+FL +VR+
Sbjct: 1199 KASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRS 1258

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQPSQI-- 134
            G+   E  + CLG EV+D+ LE++ +EL +SPEH     K  F+D AEF+ N   + +  
Sbjct: 1259 GSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQ-NTWENHVPG 1317

Query: 133  SEGNWGNN-----SSQTGESGGWGEWKVDK-----TSGSENPGAASNSDAW 11
            S G+W  N     ++ T +   W  W  DK     T  +  P  +S S  W
Sbjct: 1318 SGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGW 1368



 Score =  194 bits (493), Expect(2) = 3e-46
 Identities = 92/158 (58%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQIRKNGEKDKSSACTHCLDMPPITVRESN 3673
            LPIP+YHP H+ ELKR+LS++CLKCL+++K ++  NG  ++  A   C D P ++VRE  
Sbjct: 76   LPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQLLAPC-CQDSPQVSVREFR 134

Query: 3672 VKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKKK 3496
              +G+  LELK+P +S+ ++  W+FL RYG+ YG+   R LLP EV+EIL+RIP +T+KK
Sbjct: 135  PTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEVMEILRRIPEDTRKK 194

Query: 3495 LAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            L  KGYFPQDGYILQ LPVPPNCLSVPDISDG +IMSS
Sbjct: 195  LVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSS 232



 Score = 22.3 bits (46), Expect(2) = 3e-46
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D SVSMLKKVLK
Sbjct: 233  DLSVSMLKKVLK 244


>ref|XP_012068654.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
          Length = 1980

 Score = 1366 bits (3536), Expect = 0.0
 Identities = 686/1124 (61%), Positives = 864/1124 (76%), Gaps = 5/1124 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EIIKSSRSG PNFESHEVEA +LQSA+ QYL VRG+ KG R ++S+F ++ ES
Sbjct: 251  KKVLKQVEIIKSSRSGSPNFESHEVEAIDLQSAVDQYLQVRGTAKGSRDVESRFGIHKES 310

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            +D+S KAW+EKM+TLFI KGSGFSSRSVITGDAYKRV+EIG+P EIAQ+ITFEE+V+VHN
Sbjct: 311  NDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGIPFEIAQRITFEERVSVHN 370

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            + +LQELVD KLC+TYRDG S YSL++GSKGHT L+ GQVVHRRIMDGD VFINRPP+TH
Sbjct: 371  VKYLQELVDNKLCMTYRDGSSTYSLRDGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTH 430

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDC+HLFYPQSLAAKAEVLELFSVE+QL
Sbjct: 431  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQL 490

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQL  D+LLSLK MFK YFL +A AQQLAM+VS  L  P L K     P W
Sbjct: 491  LSSHSGNLNLQLTTDSLLSLKSMFKAYFLDRAAAQQLAMFVSFSLPQPTLWKVPYSDPIW 550

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            T LQILQ ALP+ FDC+GERY I + +I+K D++RDVVQS+ N+I+ ++F +KG     +
Sbjct: 551  TVLQILQTALPSQFDCTGERYFISKGDIIKIDFSRDVVQSVINEIVISIFFEKGPDAVFK 610

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             FNSLQPLLMEN+FSEG+SV LED  I +++   + K+ + ISPLL  LRSTYNE+VELQ
Sbjct: 611  FFNSLQPLLMENLFSEGFSVCLEDLYISRAVIESIHKDFKVISPLLSQLRSTYNELVELQ 670

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R VK+ V  FI++SS++G+LID KS+S++ KVV           DRG+ Y++TLV
Sbjct: 671  LENHIRQVKLRVAEFIVRSSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYSKTLV 730

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            EDM + F++K+    ++ PS  +GLI+SCFFHGL+PYE++V SIS+REV+VRSSRGL+EP
Sbjct: 731  EDMVSHFERKYPSEVVEYPSAQYGLIQSCFFHGLDPYEEMVHSISTREVIVRSSRGLSEP 790

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQF+Y V+ G + +S  PAGEPVGVLAATA
Sbjct: 791  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKAGIKAQSLFPAGEPVGVLAATA 850

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LC+VN KNDL DRR ILYLNDC CG+ YC+E A
Sbjct: 851  MSNPAYKAVLDSTPSSNSSWELMKEILLCRVNFKNDLTDRRIILYLNDCGCGRNYCQEKA 910

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL++  LK IAN F++EY++Q     +   +  L GHIHLD+ +++ +  ++  
Sbjct: 911  AYKVKNHLQKVILKDIANHFMIEYKRQ-----HTIADVGLAGHIHLDKMKLENLKVSMEV 965

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDA-ESSQVPCLQFSWQDTSAC 1022
            I Q+C E +   +KKK +L    + + +SAS+CC F    A E S  PCL F WQD S  
Sbjct: 966  IHQKCTETVNFFRKKK-KLALFFKRIEVSASQCCSFQESCADEWSGSPCLTFFWQD-SDI 1023

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             +E+ S L A+ IC +LLET++KGD R++ ANI W++PDTT+W+R PS+ QKG       
Sbjct: 1024 RIERISNLFADMICPVLLETVIKGDHRISNANITWISPDTTTWIRNPSRTQKGELALDVV 1083

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ GD WR V+DSCLPV+HLIDT RSIPY IKQ+QE++G+SCAFDQAV+RL+TS
Sbjct: 1084 IEKSAVKQSGDAWRIVLDSCLPVLHLIDTTRSIPYAIKQIQELLGVSCAFDQAVQRLSTS 1143

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + +VAKGVLKEHLIL+ANSMTC GNL+GFN+GGYK+L RSL+VQ+PFT+ATLFTPRKCFE
Sbjct: 1144 VTIVAKGVLKEHLILLANSMTCAGNLVGFNSGGYKSLSRSLDVQVPFTDATLFTPRKCFE 1203

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKCH+D+LSS VASCS+GK VAVGTG+RF++LW+KKE  LDQ  ++D+Y FL +VR 
Sbjct: 1204 RAAEKCHVDTLSSIVASCSWGKNVAVGTGSRFDVLWDKKEACLDQEGSIDVYEFLNMVRC 1263

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDGG-KATFDDIAEFEPNL--QPSQI 134
             +  GE  + CLG +VDD+ L++   +  LSPEH  G  K TF+D AEF+  L  QP+  
Sbjct: 1264 -SANGEESTACLGADVDDLMLDDGMDDWNLSPEHNFGSDKPTFEDRAEFQNCLDNQPADW 1322

Query: 133  SEGNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
             + ++  N S +G     G W  DK   ++        ++W+GW
Sbjct: 1323 EKASYAVNGSSSG-----GNWGGDKNMETD------KENSWSGW 1355



 Score =  194 bits (492), Expect(2) = 6e-46
 Identities = 94/161 (58%), Positives = 126/161 (78%), Gaps = 4/161 (2%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMK--KGQIRKNGEKDKSSACTHCLDMPPITVRE 3679
            LPIP+YHPSH+ ELKRLLS++CLKCL++K  K Q + NG  ++  +C  C +   I+V+E
Sbjct: 85   LPIPIYHPSHISELKRLLSLLCLKCLKLKTNKFQAKSNGVAERLFSC--CEEASQISVKE 142

Query: 3678 SNVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEEC-RTLLPCEVLEILKRIPAET 3505
                DG+  L+LK+P + +L +  W+FL+RYGF YG ++  R+LLPCEV+E+LKRIP +T
Sbjct: 143  IKTTDGALFLQLKLPSRMRLNDGFWSFLDRYGFHYGGDDTIRSLLPCEVMEMLKRIPQDT 202

Query: 3504 KKKLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            +KKLA KGYFPQ+GYI++ LPVPPNCLSVPDISDG +IMSS
Sbjct: 203  RKKLARKGYFPQEGYIMRYLPVPPNCLSVPDISDGVSIMSS 243



 Score = 21.9 bits (45), Expect(2) = 6e-46
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D S+SMLKKVLK
Sbjct: 244  DLSISMLKKVLK 255


>gb|KDP40529.1| hypothetical protein JCGZ_24528 [Jatropha curcas]
          Length = 1821

 Score = 1366 bits (3536), Expect = 0.0
 Identities = 686/1124 (61%), Positives = 864/1124 (76%), Gaps = 5/1124 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EIIKSSRSG PNFESHEVEA +LQSA+ QYL VRG+ KG R ++S+F ++ ES
Sbjct: 92   KKVLKQVEIIKSSRSGSPNFESHEVEAIDLQSAVDQYLQVRGTAKGSRDVESRFGIHKES 151

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            +D+S KAW+EKM+TLFI KGSGFSSRSVITGDAYKRV+EIG+P EIAQ+ITFEE+V+VHN
Sbjct: 152  NDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGIPFEIAQRITFEERVSVHN 211

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            + +LQELVD KLC+TYRDG S YSL++GSKGHT L+ GQVVHRRIMDGD VFINRPP+TH
Sbjct: 212  VKYLQELVDNKLCMTYRDGSSTYSLRDGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTH 271

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDC+HLFYPQSLAAKAEVLELFSVE+QL
Sbjct: 272  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQL 331

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQL  D+LLSLK MFK YFL +A AQQLAM+VS  L  P L K     P W
Sbjct: 332  LSSHSGNLNLQLTTDSLLSLKSMFKAYFLDRAAAQQLAMFVSFSLPQPTLWKVPYSDPIW 391

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            T LQILQ ALP+ FDC+GERY I + +I+K D++RDVVQS+ N+I+ ++F +KG     +
Sbjct: 392  TVLQILQTALPSQFDCTGERYFISKGDIIKIDFSRDVVQSVINEIVISIFFEKGPDAVFK 451

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             FNSLQPLLMEN+FSEG+SV LED  I +++   + K+ + ISPLL  LRSTYNE+VELQ
Sbjct: 452  FFNSLQPLLMENLFSEGFSVCLEDLYISRAVIESIHKDFKVISPLLSQLRSTYNELVELQ 511

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R VK+ V  FI++SS++G+LID KS+S++ KVV           DRG+ Y++TLV
Sbjct: 512  LENHIRQVKLRVAEFIVRSSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYSKTLV 571

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            EDM + F++K+    ++ PS  +GLI+SCFFHGL+PYE++V SIS+REV+VRSSRGL+EP
Sbjct: 572  EDMVSHFERKYPSEVVEYPSAQYGLIQSCFFHGLDPYEEMVHSISTREVIVRSSRGLSEP 631

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQF+Y V+ G + +S  PAGEPVGVLAATA
Sbjct: 632  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKAGIKAQSLFPAGEPVGVLAATA 691

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LC+VN KNDL DRR ILYLNDC CG+ YC+E A
Sbjct: 692  MSNPAYKAVLDSTPSSNSSWELMKEILLCRVNFKNDLTDRRIILYLNDCGCGRNYCQEKA 751

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL++  LK IAN F++EY++Q     +   +  L GHIHLD+ +++ +  ++  
Sbjct: 752  AYKVKNHLQKVILKDIANHFMIEYKRQ-----HTIADVGLAGHIHLDKMKLENLKVSMEV 806

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDA-ESSQVPCLQFSWQDTSAC 1022
            I Q+C E +   +KKK +L    + + +SAS+CC F    A E S  PCL F WQD S  
Sbjct: 807  IHQKCTETVNFFRKKK-KLALFFKRIEVSASQCCSFQESCADEWSGSPCLTFFWQD-SDI 864

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             +E+ S L A+ IC +LLET++KGD R++ ANI W++PDTT+W+R PS+ QKG       
Sbjct: 865  RIERISNLFADMICPVLLETVIKGDHRISNANITWISPDTTTWIRNPSRTQKGELALDVV 924

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ GD WR V+DSCLPV+HLIDT RSIPY IKQ+QE++G+SCAFDQAV+RL+TS
Sbjct: 925  IEKSAVKQSGDAWRIVLDSCLPVLHLIDTTRSIPYAIKQIQELLGVSCAFDQAVQRLSTS 984

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + +VAKGVLKEHLIL+ANSMTC GNL+GFN+GGYK+L RSL+VQ+PFT+ATLFTPRKCFE
Sbjct: 985  VTIVAKGVLKEHLILLANSMTCAGNLVGFNSGGYKSLSRSLDVQVPFTDATLFTPRKCFE 1044

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKCH+D+LSS VASCS+GK VAVGTG+RF++LW+KKE  LDQ  ++D+Y FL +VR 
Sbjct: 1045 RAAEKCHVDTLSSIVASCSWGKNVAVGTGSRFDVLWDKKEACLDQEGSIDVYEFLNMVRC 1104

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDGG-KATFDDIAEFEPNL--QPSQI 134
             +  GE  + CLG +VDD+ L++   +  LSPEH  G  K TF+D AEF+  L  QP+  
Sbjct: 1105 -SANGEESTACLGADVDDLMLDDGMDDWNLSPEHNFGSDKPTFEDRAEFQNCLDNQPADW 1163

Query: 133  SEGNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
             + ++  N S +G     G W  DK   ++        ++W+GW
Sbjct: 1164 EKASYAVNGSSSG-----GNWGGDKNMETD------KENSWSGW 1196



 Score =  125 bits (314), Expect(2) = 2e-25
 Identities = 57/83 (68%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
 Frame = -1

Query: 3627 KLRENMWNFLERYGFIYGYEEC-RTLLPCEVLEILKRIPAETKKKLAAKGYFPQDGYILQ 3451
            +L +  W+FL+RYGF YG ++  R+LLPCEV+E+LKRIP +T+KKLA KGYFPQ+GYI++
Sbjct: 2    RLNDGFWSFLDRYGFHYGGDDTIRSLLPCEVMEMLKRIPQDTRKKLARKGYFPQEGYIMR 61

Query: 3450 KLPVPPNCLSVPDISDGTTIMSS 3382
             LPVPPNCLSVPDISDG +IMSS
Sbjct: 62   YLPVPPNCLSVPDISDGVSIMSS 84



 Score = 21.9 bits (45), Expect(2) = 2e-25
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D S+SMLKKVLK
Sbjct: 85   DLSISMLKKVLK 96


>ref|XP_011655250.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Cucumis sativus]
            gi|778702723|ref|XP_011655251.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Cucumis sativus]
            gi|700195913|gb|KGN51090.1| hypothetical protein
            Csa_5G435050 [Cucumis sativus]
          Length = 1963

 Score = 1353 bits (3502), Expect = 0.0
 Identities = 681/1123 (60%), Positives = 855/1123 (76%), Gaps = 4/1123 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EIIK SRSG PNFESHEVEAN+LQ A+ QYL VRG+ K  RGI ++F VN E 
Sbjct: 244  KKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKEL 303

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            +D S KAW+EKM+TLFI KGSGFSSRSVITGDAYK V+EIG+P E+AQ+ITFEE+V+VHN
Sbjct: 304  NDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHN 363

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            + +LQELVDKKLCLTYRDG S YSL+EGS GHT LK GQ+VHRRIMDGDIVFINRPP+TH
Sbjct: 364  IRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA  VY+HD+H VKINPLIC PL ADFDGDCIHLFYPQS+AAKAEVL LFSVE+QL
Sbjct: 424  KHSLQALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQL 483

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLAND+LLSLK+MF+KYFL KA AQQLAM+VSS L  PALL        W
Sbjct: 484  LSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHW 543

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ  LPA FDC G+ Y+I+ S  +KFD++RD + S+ N+I+ ++F +KG ++ L+
Sbjct: 544  TALQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLK 603

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLME++FSEG+SV L+D+ +P +  + L+KN+Q +SPLLY LRST+NE+VELQ
Sbjct: 604  FFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQ 663

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENHLR VKVP  NFILK S+LG L DSKSES+INKVV           D+GR Y+++L+
Sbjct: 664  LENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLI 723

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+ + F  +++   ID PS  FGL++ CFFHGL+PYE++V SIS+REV+VRSSRGLTEP
Sbjct: 724  EDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEP 783

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETG-TEGRSFSPAGEPVGVLAAT 1562
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQ +Y ++ G  +  S  P GEPVGVLAAT
Sbjct: 784  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAAT 843

Query: 1561 AISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKEN 1382
            A+S PAYKAVLD       SW++MKEI+LCKV+ KN+  DRR ILYLN+C+CG+KYC EN
Sbjct: 844  AMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNEN 903

Query: 1381 AAYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVH 1202
            AAY V++HLK+  LK  A  F++EY +Q            LVGH+HL+   +K +  ++ 
Sbjct: 904  AAYVVKSHLKKVTLKDAAMDFMIEYNRQP---TPSGLGPGLVGHVHLNRMLLKELNIDMT 960

Query: 1201 QILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAESS-QVPCLQFSWQDTSA 1025
            ++L+RCQE + S KKKK    +I  AL  S SE C F   + E S  +PCL F W  T  
Sbjct: 961  EVLRRCQETMSSFKKKKK---KIAHALRFSISEHCAFHQWNGEESIDMPCLIF-WHQTRD 1016

Query: 1024 CTLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXX 845
              LE+T+ ++A+ +  +L ETI+KGDPR+  A+++W++PD+TSW + PS+ Q G      
Sbjct: 1017 VHLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDV 1076

Query: 844  XXXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTT 665
                   KQ+GD WR V+D CLPV+HLIDTRRS+PY IKQ+QE++GISCAFDQ ++RL+ 
Sbjct: 1077 CLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSK 1136

Query: 664  SIRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCF 485
            S+ MV+KGVL +HLIL+ANSMTCTGN+IGFN+GGYKAL R+LN+Q+PFTEATLFTPRKCF
Sbjct: 1137 SVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCF 1196

Query: 484  EKAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVR 308
            EKAAEKCH DSLSS VASCS+GK VAVGTG+RF+ILW++KE+G  Q + VD+YNFL +VR
Sbjct: 1197 EKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVR 1256

Query: 307  TGTKEGEVISGCLGEEVDDMELENDYVELPLSPE-HPDGGKATFDDIAEFEPNLQPSQIS 131
            +G  E E  S CLGEE++D+ +E++Y EL LSPE      K  F+D AEFE  L  +   
Sbjct: 1257 SGKSE-EPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLD-NYPG 1314

Query: 130  EGNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
            E  W    S    S G G+W+ ++   + N   +S+ + W+GW
Sbjct: 1315 ESKWEKAPSLGAVSTGGGQWESNENGKATN---SSDGNDWSGW 1354



 Score =  195 bits (495), Expect = 3e-46
 Identities = 95/159 (59%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQI-RKNGEKDKSSACTHCLDMPPITVRES 3676
            LPIP+YHP+H+ ELK++LS++CLKCL+MKK +   KN    +    + C D   +T+RE+
Sbjct: 78   LPIPIYHPNHITELKKMLSLLCLKCLKMKKTKFPSKNIGFAERLLSSCCEDASQVTIREA 137

Query: 3675 NVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKK 3499
               DG+  L+LKVP ++ L+E  W+FLERYGF YG    RTLLPCEV E+LK+IP ET+K
Sbjct: 138  KKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLLPCEVKEMLKKIPNETRK 197

Query: 3498 KLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KLA +GY+PQDGYILQ LPVPPNCLSVP+ISDG T+MSS
Sbjct: 198  KLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSS 236


>ref|XP_008465860.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Cucumis melo]
            gi|659072503|ref|XP_008465867.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Cucumis melo]
            gi|659072505|ref|XP_008465874.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Cucumis melo]
          Length = 1964

 Score = 1350 bits (3493), Expect = 0.0
 Identities = 676/1122 (60%), Positives = 853/1122 (76%), Gaps = 3/1122 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EIIK SRSG PNFESHEVEAN+LQ A+ QYL VRG+ K  RGI ++F VN E 
Sbjct: 244  KKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKEL 303

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            +D S KAW+EKM+TLFI KGSGFSSRSVITGDAYK V+EIG+P E+AQ+ITFEE+V+VHN
Sbjct: 304  NDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHN 363

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            + +LQELVDKKLCLTYRDG S YSL+EGS GHT LK GQ+VHRRIMDGDIVFINRPP+TH
Sbjct: 364  IRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTH 423

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA  VY+HD+H VKINPLIC  L ADFDGDCIHLFYPQS+AAKAEVL LFSVE+QL
Sbjct: 424  KHSLQALRVYLHDDHVVKINPLICGSLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQL 483

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLAND+LLSLK+MF+KYFL KA AQQLAM+VSS L  PALL        W
Sbjct: 484  LSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHW 543

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ  LPA FDC G+ Y+I+ S  +KFD+++D + S+ N+I+ ++F +KG ++ L+
Sbjct: 544  TALQILQTVLPACFDCHGDSYLIKNSNFLKFDFDKDAMPSLINEILTSIFFQKGPEEVLK 603

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLME++FSEG+SV L+D+ +P +  + L+KN+Q +SPLLY LRST+NE+VELQ
Sbjct: 604  FFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQ 663

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENHLR VKVP  NFILK S+LG L DSKSES+INKVV           D+GR Y+++L+
Sbjct: 664  LENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLI 723

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+ + F  +++   ID PS  FGL++ CFFHGL+PYE++V SIS+REV+VRSSRGLTEP
Sbjct: 724  EDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEP 783

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETG-TEGRSFSPAGEPVGVLAAT 1562
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQ +Y ++ G  +  S  P GEPVGVLAAT
Sbjct: 784  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAAT 843

Query: 1561 AISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKEN 1382
            A+S PAYKAVLD       SW++MKEI+LCKV+ KN+  DRR ILYLN+C+CG+KYC EN
Sbjct: 844  AMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNEN 903

Query: 1381 AAYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVH 1202
            AAY V++HLK+  LK +A  F++EY +Q            LVGH+HL+   +K +  N+ 
Sbjct: 904  AAYVVKSHLKKVTLKDVAVDFMIEYNRQP---TPSGLGPGLVGHVHLNRMLLKELNINMT 960

Query: 1201 QILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAESSQVPCLQFSWQDTSAC 1022
            ++L+RCQE + S KKKK ++   LR     +  C +      ES  +PCL F W +T   
Sbjct: 961  EVLRRCQETMSSFKKKKKKVAHALRFAI--SEHCAFHQWNGVESIDMPCLIF-WHETRDV 1017

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             LE+T+ ++A+ +  +L ETI+KGDPR+  A+++W++PD+TSW + PS+ Q G       
Sbjct: 1018 HLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVC 1077

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ+GD WR V+D CLPV+HLIDTRRS+PY IKQ+QE++GISCAFDQ ++RL+ S
Sbjct: 1078 LEKSALKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKS 1137

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MV+KGVL +HLIL+ANSMTCTGN+IGFN+GGYKAL R+LN+Q+PFTEATLFTPRKCFE
Sbjct: 1138 VSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFE 1197

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            KAAEKCH DSLSS VASCS+GK VAVGTG+RF+ILW++KE+G  Q + VD+YNFL +VR+
Sbjct: 1198 KAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRS 1257

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPE-HPDGGKATFDDIAEFEPNLQPSQISE 128
            G  E E  S CLGEEV+D+ +E++Y EL LSPE      K  F+D AEFE  L  +   E
Sbjct: 1258 GKSE-EPTSACLGEEVEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLD-NDPGE 1315

Query: 127  GNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
              W    S    S G G+W   +++G+     +S+ + W+GW
Sbjct: 1316 SKWEKAPSLGAVSTGGGQW---ESNGNGKATKSSDDNDWSGW 1354



 Score =  194 bits (492), Expect = 7e-46
 Identities = 94/159 (59%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQI-RKNGEKDKSSACTHCLDMPPITVRES 3676
            LPIP+YHP+H+ EL+++LS++CLKCL+MKK +   KN    +    + C D   +T+RE+
Sbjct: 78   LPIPIYHPNHITELRKMLSLLCLKCLKMKKTKFPSKNIGFAERLLSSCCEDASQVTIREA 137

Query: 3675 NVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKK 3499
               DG+  L+LKVP ++ L+E  W+FLERYGF YG    RTLLPCEV E+LK+IP ET+K
Sbjct: 138  KKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLLPCEVKEMLKKIPNETRK 197

Query: 3498 KLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KLA +GY+PQDGYILQ LPVPPNCLSVP+ISDG T+MSS
Sbjct: 198  KLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSS 236


>ref|XP_008231662.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Prunus mume]
          Length = 1855

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 685/1127 (60%), Positives = 844/1127 (74%), Gaps = 8/1127 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EII+SSRSG PNFES  VEANELQ+ I QYL VRG+ K  R I ++F VN E 
Sbjct: 243  KKVLKQVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPSRDIDARFGVNKEL 302

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            + +S KAW+EKM+TLFI KGSGFSSRSVITGDA++RV+E+G+P EIAQ+ITFEEKV  HN
Sbjct: 303  NASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEEKVNDHN 362

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            + +LQELVD KLCLTY+DG S YSL+EGSKGHT L+ GQVVHRRIMDGD+VF+NRPP+TH
Sbjct: 363  IRYLQELVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTTH 422

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA  VY+HD+H VKINPLIC PL ADFDGDCIHLFYPQSLAAKAEVLELFSVE+QL
Sbjct: 423  KHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 482

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSGK NLQLA DALLSLK+MFKKYFL KA AQQLAM+ SS L  PALLKA      W
Sbjct: 483  LSSHSGKPNLQLATDALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYW 542

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ ALPA FDC+G+ Y++ +SEI+  D++   V ++ NDI  +VF +KG +  L+
Sbjct: 543  TAFQILQTALPAHFDCNGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEAVLK 602

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+FSEG+SV LEDF + ++  ++++KN+Q  S LLYHLRSTYNE VE Q
Sbjct: 603  FFDSLQPLLMENLFSEGFSVGLEDFSMSRASIQDIQKNIQDSSDLLYHLRSTYNEFVEFQ 662

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            ++N +R VKVPV +FIL+SS LG+LIDSKS+S+INK+V           D+GR Y++TLV
Sbjct: 663  LQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLV 722

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+ +    K+  S ID PS  +GL++SCFFHGL+PYE +V SI++REV+VRSSRGL+EP
Sbjct: 723  EDVASLCHSKYP-SDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEP 781

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQF+Y V TG+  +   PAGEPVGVLAATA
Sbjct: 782  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNTGSRHQHLFPAGEPVGVLAATA 841

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKVN KN+L DRR ILYLN+C CG+KYC+E A
Sbjct: 842  MSNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERA 901

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            A  V+N LK+ +LK  A  F++EY  Q   + +   +A LVGHIHL+E  ++ +   VH 
Sbjct: 902  ACLVKNQLKKVSLKDTAVEFMIEYNNQLSGLGSLVNDAGLVGHIHLNEDMLRELNVGVHD 961

Query: 1198 ILQRCQEKIGSIK-----KKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQ 1037
            ILQ+CQE I S +     KKK  +G   +   L ASE C F    AE  S  PCL F  Q
Sbjct: 962  ILQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSSAEKRSDSPCLMFFLQ 1021

Query: 1036 DTSACTLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXX 857
             T       T Q  A+ IC +LLETI+KGDPR+  ANI+W++PDTT+W+R P+K QKG  
Sbjct: 1022 ATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEW 1081

Query: 856  XXXXXXXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVE 677
                       KQ GD WRTV+DSCLPV+HLIDTRRSIPY IKQ+QE++G+SCAFDQAV+
Sbjct: 1082 ALDVVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQ 1141

Query: 676  RLTTSIRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTP 497
            RL+T++ MVAKGVLKEHLIL+ANSMTC GN +GFN+ GYKAL R+LN+Q+PFTEATLFTP
Sbjct: 1142 RLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTP 1201

Query: 496  RKCFEKAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFL 320
            RKCFE+AAEKCH+DSL+S VASCS+GK VAVGTGARF++LW+ +E+   Q   +D++NFL
Sbjct: 1202 RKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGARFDVLWDTREVEFTQEGGLDVFNFL 1261

Query: 319  QIVRTGTKEGEVISGCLGEEVDDMELENDYVELPLSPE-HPDGGKATFDDIAEFEPNLQP 143
             +V T   E E  +G LG EVDD+ L ++  +   SPE +    +  F+D+ EF+  L  
Sbjct: 1262 HMVSTANVEEET-TGALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEFDDKLGD 1320

Query: 142  SQISEGNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
                + NW  +SS   +S G  +W VDK     N G  +  D W+ W
Sbjct: 1321 LP-EKSNWEKDSSFHTDSSGGKDWSVDK-----NVGTVAVPDVWSSW 1361



 Score =  194 bits (493), Expect(2) = 2e-46
 Identities = 94/159 (59%), Positives = 119/159 (74%), Gaps = 2/159 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQI-RKNGEKDKSSACTHCLDMPPITVRES 3676
            LPIP++HP+H+ ELKR+LS++CLKCL+MKK +   KN    +    + C D   +++ E 
Sbjct: 77   LPIPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERMLSSCCEDASQVSIGEI 136

Query: 3675 NVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKK 3499
               DGS  L+LK P KS+     WNFLERYGF YG    RTLLPCEV+E+LKRIP ET+K
Sbjct: 137  KPTDGSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDGHIRTLLPCEVMEMLKRIPQETRK 196

Query: 3498 KLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KLAAKGYFPQDGYIL ++PVPPNCLSVP+ISDG ++MS+
Sbjct: 197  KLAAKGYFPQDGYILSQIPVPPNCLSVPEISDGVSVMSA 235



 Score = 22.7 bits (47), Expect(2) = 2e-46
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D S+SMLKKVLK
Sbjct: 236  DPSISMLKKVLK 247


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 686/1127 (60%), Positives = 844/1127 (74%), Gaps = 8/1127 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EII+SSRSG PNFES  VEANELQ+ I QYL VRG+ K  R I ++F VN E 
Sbjct: 243  KKVLKQVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPSRDIDARFGVNKEL 302

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            + +S KAW+EKM+TLFI KGSGFSSRSVITGDA++RV+E+G+P EIAQ+ITFEEKV  HN
Sbjct: 303  NASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEEKVNDHN 362

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            + +LQELVD KLCLTY+DG S YSL+EGSKGHT L+ GQVVHRRIMDGD+VF+NRPP+TH
Sbjct: 363  IRYLQELVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTTH 422

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA  VY+HD+H VKINPLIC PL ADFDGDCIHLFYPQSLAAKAEVLELFSVE+QL
Sbjct: 423  KHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 482

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSGK NLQLA DALLSLK+MFKKYFL KA AQQLAM+ SS L  PALLKA      W
Sbjct: 483  LSSHSGKPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYW 542

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ ALPA FDCSG+ Y++ +SEI+  D++   V ++ NDI  +VF +KG +D L+
Sbjct: 543  TAFQILQTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVLK 602

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+FSEG+SV LEDF + ++  ++++KN+Q  S LLYHLRSTYNE VE Q
Sbjct: 603  FFDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQ 662

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            ++N +R VKVPV +FIL+SS LG+LIDSKS+S+INK+V           D+GR Y++TLV
Sbjct: 663  LQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLV 722

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+ +    K+  S ID PS  +GL++SCFFHGL+PYE +V SI++REV+VRSSRGL+EP
Sbjct: 723  EDVASLCHSKYP-SDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEP 781

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN CSNS+IQF+Y V  G+  +   PAGEPVGVLAATA
Sbjct: 782  GTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATA 841

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKVN KN+L DRR ILYLN+C CG+KYC+E A
Sbjct: 842  MSNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERA 901

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            A  V+N LK+ +LK  A  F++EY  Q   + +   +A LVGHIHL+E  ++ +   VH 
Sbjct: 902  ACLVKNQLKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHD 961

Query: 1198 ILQRCQEKIGSIK-----KKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQ 1037
            ILQ+CQE I S +     KKK  +G   +   L ASE C F    AE  S  PCL F  Q
Sbjct: 962  ILQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFLQ 1021

Query: 1036 DTSACTLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXX 857
             T       T Q  A+ IC +LLETI+KGDPR+  ANI+W++PDTT+W+R P+K QKG  
Sbjct: 1022 ATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEW 1081

Query: 856  XXXXXXXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVE 677
                       KQ GD WRTV+DSCLPV+HLIDTRRSIPY IKQ+QE++G+SCAFDQAV+
Sbjct: 1082 ALDIVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQ 1141

Query: 676  RLTTSIRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTP 497
            RL+T++ MVAKGVLKEHLIL+ANSMTC GN +GFN+ GYKAL R+LN+Q+PFTEATLFTP
Sbjct: 1142 RLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTP 1201

Query: 496  RKCFEKAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFL 320
            RKCFE+AAEKCH+DSL+S VASCS+GK VAVGTG RF++LW+ +E+ L Q   +D++NFL
Sbjct: 1202 RKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNFL 1261

Query: 319  QIVRTGTKEGEVISGCLGEEVDDMELENDYVELPLSPE-HPDGGKATFDDIAEFEPNLQP 143
             +V T   E E  +G LG EVDD+ L ++  +   SPE +    +  F+D+ EF+  L  
Sbjct: 1262 HMVSTANVE-EATTGALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEFDDKLGD 1320

Query: 142  SQISEGNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
                + NW  +SS   +S G  +W VDK     N G  +  D W+ W
Sbjct: 1321 LP-EKSNWEKDSSFHTDSNGGKDWSVDK-----NVGTVAVPDVWSSW 1361



 Score =  194 bits (493), Expect(2) = 2e-46
 Identities = 94/159 (59%), Positives = 119/159 (74%), Gaps = 2/159 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQI-RKNGEKDKSSACTHCLDMPPITVRES 3676
            LPIP++HP+H+ ELKR+LS++CLKCL+MKK +   KN    +    + C D   +++ E 
Sbjct: 77   LPIPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERMLSSCCEDASQVSIGEI 136

Query: 3675 NVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKK 3499
               DGS  L+LK P KS+     WNFLERYGF YG    RTLLPCEV+E+LKRIP ET+K
Sbjct: 137  KPTDGSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDGHIRTLLPCEVMEMLKRIPQETRK 196

Query: 3498 KLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KLAAKGYFPQDGYIL ++PVPPNCLSVP+ISDG ++MS+
Sbjct: 197  KLAAKGYFPQDGYILSQIPVPPNCLSVPEISDGVSVMSA 235



 Score = 22.7 bits (47), Expect(2) = 2e-46
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D S+SMLKKVLK
Sbjct: 236  DPSISMLKKVLK 247


>ref|XP_009361958.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Pyrus x
            bretschneideri] gi|694366759|ref|XP_009361959.1|
            PREDICTED: DNA-directed RNA polymerase V subunit 1 [Pyrus
            x bretschneideri]
          Length = 1960

 Score = 1337 bits (3460), Expect = 0.0
 Identities = 683/1146 (59%), Positives = 856/1146 (74%), Gaps = 27/1146 (2%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            RK  KQ E+I+SSRSG PNFES  VEANELQ+ + QYL VRG+ K  R I ++  VN E 
Sbjct: 243  RKVLKQIEVIRSSRSGIPNFESQIVEANELQAIVDQYLQVRGTGKASRDIDARLGVNREL 302

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
            + +S KAW+EKM+TLFI KGSGFSSRSVITGDAYKRV+E+G+P EIAQ+ITFEEKV  HN
Sbjct: 303  NASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEVGIPYEIAQRITFEEKVNDHN 362

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            + +LQ+LVDKKLCLTYRDG S YSL+EGSKGHT L+ GQVVHRRI+DGD+VF+NRPP+TH
Sbjct: 363  IRYLQQLVDKKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRILDGDLVFVNRPPTTH 422

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA  VY+HD+H VKINPLIC PL ADFDGDCIHLFYPQSLAAKAEVLELFSVE+QL
Sbjct: 423  KHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL 482

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSGK NLQ+A D+LLSLK+MFK YFL K+ AQQLAM+ SS L  PALLKA      W
Sbjct: 483  LSSHSGKPNLQMATDSLLSLKMMFKNYFLDKSAAQQLAMFASSSLPRPALLKANAARSYW 542

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ ALPA FD  GE+Y++ +SEI+K D++   V ++ ND+  +VF +KG +D L+
Sbjct: 543  TALQILQTALPAHFDYCGEKYLVNKSEILKIDFSTSEVSAVMNDVATSVFFEKGGEDVLK 602

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+FSEG+SV LEDF + K+  ++++KN+Q  S LLYHLRSTYNE VE Q
Sbjct: 603  FFDSLQPLLMENIFSEGFSVGLEDFYMSKTSIQDIQKNIQDTSDLLYHLRSTYNEFVEFQ 662

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +E+ ++ +KVPV  FIL+SS  G+LIDSKS+S+INKVV           D+GR Y++TLV
Sbjct: 663  LESRIKNLKVPVSCFILESSAFGDLIDSKSDSAINKVVQQIGFLGLQLSDKGRFYSKTLV 722

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+ + +  K++ + ++ PS  +GL++SCFFHGL+PYE++V SI++REV+VRSSRGLTEP
Sbjct: 723  EDVASLYHNKYSFN-MEYPSAEYGLVQSCFFHGLDPYEEIVHSIATREVIVRSSRGLTEP 781

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN CSNSVIQF+Y V +G+   +  PAGEPVGVLAATA
Sbjct: 782  GTLFKNLMAILRDVVICYDGTVRNVCSNSVIQFEYGVNSGSRPPNLFPAGEPVGVLAATA 841

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKVN KN+L DRR ILYL++C CG+ +C+E A
Sbjct: 842  MSNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLSNCGCGRTFCRERA 901

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            A  V+N LK+ +LK  A  F++EY  Q  S+ +    A LVGHIHL+E  ++ +   V +
Sbjct: 902  ACLVKNQLKKVSLKDTAVEFMIEYSNQLSSLGSMVNEAGLVGHIHLNEELLRELNVGVDE 961

Query: 1198 ILQRCQEKIGSIK-----KKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQ 1037
            I Q+CQE + S +     KKK  +G + +   L ASE C F    A+  S  PCL F  Q
Sbjct: 962  IQQKCQETVNSFRRKRVGKKKFNIGYLFKNTVLFASEHCSFHHSCADKRSDSPCLMFFLQ 1021

Query: 1036 DTSACTLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXX 857
             T    LE TSQ  A+ IC +LLETI+KGDPR++ ANI+W++PDTT+W+R P+K QKG  
Sbjct: 1022 ATE--ELETTSQYYADLICPVLLETIIKGDPRISSANIIWIDPDTTTWIRSPNKSQKGEW 1079

Query: 856  XXXXXXXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVE 677
                       KQ GD WR V+DSCLPV+HLIDTRRSIPY IKQ+QE++G+SCAFDQAV+
Sbjct: 1080 ALDVVLEKSVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQ 1139

Query: 676  RLTTSIRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTP 497
            RL T++ MVAKGVLKEHLIL+ANSMTC GN +GFN+ GYKAL R+LN+Q+PFTEATLFTP
Sbjct: 1140 RLATAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTP 1199

Query: 496  RKCFEKAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFL 320
            RKCFE+AAEKCH+DSLSS VASCS+GK VAVGTG+RF+ILW+ +E GL+Q   +D++NFL
Sbjct: 1200 RKCFERAAEKCHMDSLSSIVASCSWGKHVAVGTGSRFDILWDTREGGLNQEGGLDVFNFL 1259

Query: 319  QIVRTGTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQ- 146
             +V T   E E  +G LG EVDD+ + ++  +  LSPE   G  +  F+DI EFE   + 
Sbjct: 1260 HMVSTANGE-EATTGALGAEVDDLMVVDELADSCLSPELDSGLDRPVFEDIIEFEDKSET 1318

Query: 145  -PSQISEGN----WGNNSSQTGESGGWGE----------WKVDKTSGSENPGAASNS--- 20
             P + S  N    WG NS++   +  WG+          W +DK +    P   +N+   
Sbjct: 1319 PPGKSSWENDSSVWGTNSTREDATSSWGKTPAREATTTTWGIDKAAEDTTPAWGTNTARE 1378

Query: 19   DAWAGW 2
            DA + W
Sbjct: 1379 DATSAW 1384



 Score =  192 bits (489), Expect = 2e-45
 Identities = 91/159 (57%), Positives = 120/159 (75%), Gaps = 2/159 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQI-RKNGEKDKSSACTHCLDMPPITVRES 3676
            LP+P++HP+H+ ELKR+LS++CLKCL+MKK +   KN    +    + C D   +++ E+
Sbjct: 77   LPVPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERMLASCCEDAAQVSIGET 136

Query: 3675 NVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKK 3499
               D S  L+LK P KS+     WNFLERYGF YG +  RTLLPCEVLE+LKRIP +T+K
Sbjct: 137  KPTDSSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDDHIRTLLPCEVLEMLKRIPQDTRK 196

Query: 3498 KLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KLA+KGYFPQDGYIL+ +PVPPNCLSVP+ISDG ++MS+
Sbjct: 197  KLASKGYFPQDGYILRHIPVPPNCLSVPEISDGVSVMSA 235


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score = 1325 bits (3430), Expect = 0.0
 Identities = 674/1126 (59%), Positives = 851/1126 (75%), Gaps = 7/1126 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EIIKSSRSG PNFESHEVEAN+LQSA+ QYL VRG+ K  R I +++ ++ ++
Sbjct: 241  KKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGISKDA 300

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
             D+S KAW+EKM+TLFI KGSGFSSR VITGD YK+V+EIG+PSEIAQ+ITFEE+V +HN
Sbjct: 301  SDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNMHN 360

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQ LVD KLCLTYRDG S YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 361  MRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 420

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDCIHLFYPQSLAAKAEV ELFSVE+QL
Sbjct: 421  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQL 480

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSH+G LNLQLA D+LLSL++M K    KKA AQQL+M++SS L  PA LK     P W
Sbjct: 481  LSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCW 540

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ A PA  DCSG+RY+I +S+I+  D++RD++QS+ N+++ ++F +KG ++ L 
Sbjct: 541  TALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLN 600

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMENVF+EG+SVSLEDF + + + + ++K++Q ISPLLY LRSTYNE+V LQ
Sbjct: 601  FFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQ 660

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R  K PV NFIL SS LG+LIDSKS+S++NKVV           ++G+ Y++TLV
Sbjct: 661  MENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLV 720

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+   FQ  +   G+D PS  FGLI+SCFFHGL+PYE +V SIS+REV+VRSSRGL+EP
Sbjct: 721  EDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEP 780

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQF Y +   T+ +   PAGEPVGVLAATA
Sbjct: 781  GTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATA 838

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKV++KNDL DRR ILYL DC CG+KYC+ENA
Sbjct: 839  MSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENA 898

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL++  LK  A   + EY++QQ   E   + A LVGHI L++A +K +  ++ +
Sbjct: 899  AYLVKNHLRKVKLKDTAVELIFEYKQQQTVSE---SEAGLVGHILLNKAVLKELNISMQE 955

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPP-DAESSQVPCLQFSWQDTSAC 1022
            +  +CQE I S +KKK +     +   L  SECC        +   + CL F  ++T   
Sbjct: 956  VHMKCQETIISFRKKK-KTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDD 1014

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             L+ T Q + + I  +LLET++KGDPR+  ANI+WV+PDTT+W+R PSK QKG       
Sbjct: 1015 HLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVV 1074

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ+GD WRTV+D CLPVI+LIDT+RSIPY IKQ+QE++GISCAF+QAV+RL+TS
Sbjct: 1075 LEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTS 1134

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MVA+GVLKEHLIL+ANSMTC GNLIGFN+GGYKAL RSLN+Q+PF+EATLFTPRKCFE
Sbjct: 1135 VSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFE 1194

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKCH+DSLSS VASCS+GK VAVGTG+RF++LW++KE+G DQ + +D+YNFL ++ +
Sbjct: 1195 RAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSS 1254

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNL--QPSQI 134
             +      + CLGEEVDD+   ++  E  LSPEH +G  K  F+D A+FE +L  QP++ 
Sbjct: 1255 ASGPSSTTT-CLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAES 1313

Query: 133  S--EGNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
            S  +G   +  S    S  W +   D    +    + +    W  W
Sbjct: 1314 SWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDW 1359



 Score =  195 bits (496), Expect = 2e-46
 Identities = 98/159 (61%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMK-KGQIRKNGEKDKSSACTHCLDMPPITVRES 3676
            LPIP+YHPSH+ ELKRLLS++CLKCLRMK K QI+     D+  A   C + P ++++E 
Sbjct: 77   LPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRLLASC-CENAPQVSIKEV 135

Query: 3675 NVKDGSFCLELKVPKSKLRENMWNFLERYGFIYG-YEECRTLLPCEVLEILKRIPAETKK 3499
               DG+  LELK P  + R + W FLE+YGF YG +   RTLLPCEV+EILKRIPAET++
Sbjct: 136  KTTDGACSLELKQPSRQARTS-WEFLEKYGFRYGDHHNTRTLLPCEVMEILKRIPAETRR 194

Query: 3498 KLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KL+ KG+FPQ+GYIL+ LPVPPNCLSVPDISDG +IMSS
Sbjct: 195  KLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSS 233


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score = 1325 bits (3430), Expect = 0.0
 Identities = 674/1126 (59%), Positives = 851/1126 (75%), Gaps = 7/1126 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQ EIIKSSRSG PNFESHEVEAN+LQSA+ QYL VRG+ K  R I +++ ++ ++
Sbjct: 241  KKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGISKDA 300

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
             D+S KAW+EKM+TLFI KGSGFSSR VITGD YK+V+EIG+PSEIAQ+ITFEE+V +HN
Sbjct: 301  SDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNMHN 360

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQ LVD KLCLTYRDG S YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 361  MRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 420

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDCIHLFYPQSLAAKAEV ELFSVE+QL
Sbjct: 421  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQL 480

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSH+G LNLQLA D+LLSL++M K    KKA AQQL+M++SS L  PA LK     P W
Sbjct: 481  LSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCW 540

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TALQILQ A PA  DCSG+RY+I +S+I+  D++RD++QS+ N+++ ++F +KG ++ L 
Sbjct: 541  TALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLN 600

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMENVF+EG+SVSLEDF + + + + ++K++Q ISPLLY LRSTYNE+V LQ
Sbjct: 601  FFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQ 660

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R  K PV NFIL SS LG+LIDSKS+S++NKVV           ++G+ Y++TLV
Sbjct: 661  MENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLV 720

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+   FQ  +   G+D PS  FGLI+SCFFHGL+PYE +V SIS+REV+VRSSRGL+EP
Sbjct: 721  EDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEP 780

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQF Y +   T+ +   PAGEPVGVLAATA
Sbjct: 781  GTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATA 838

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKV++KNDL DRR ILYL DC CG+KYC+ENA
Sbjct: 839  MSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENA 898

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL++  LK  A   + EY++QQ   E   + A LVGHI L++A +K +  ++ +
Sbjct: 899  AYLVKNHLRKVKLKDTAVELIFEYKQQQTVSE---SEAGLVGHILLNKAVLKELNISMQE 955

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPP-DAESSQVPCLQFSWQDTSAC 1022
            +  +CQE I S +KKK +     +   L  SECC        +   + CL F  ++T   
Sbjct: 956  VHMKCQETIISFRKKK-KTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDD 1014

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             L+ T Q + + I  +LLET++KGDPR+  ANI+WV+PDTT+W+R PSK QKG       
Sbjct: 1015 HLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVV 1074

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ+GD WRTV+D CLPVI+LIDT+RSIPY IKQ+QE++GISCAF+QAV+RL+TS
Sbjct: 1075 LEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTS 1134

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MVA+GVLKEHLIL+ANSMTC GNLIGFN+GGYKAL RSLN+Q+PF+EATLFTPRKCFE
Sbjct: 1135 VSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFE 1194

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKCH+DSLSS VASCS+GK VAVGTG+RF++LW++KE+G DQ + +D+YNFL ++ +
Sbjct: 1195 RAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSS 1254

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNL--QPSQI 134
             +      + CLGEEVDD+   ++  E  LSPEH +G  K  F+D A+FE +L  QP++ 
Sbjct: 1255 ASGPSSTTT-CLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAES 1313

Query: 133  S--EGNWGNNSSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
            S  +G   +  S    S  W +   D    +    + +    W  W
Sbjct: 1314 SWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDW 1359



 Score =  195 bits (496), Expect = 2e-46
 Identities = 98/159 (61%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMK-KGQIRKNGEKDKSSACTHCLDMPPITVRES 3676
            LPIP+YHPSH+ ELKRLLS++CLKCLRMK K QI+     D+  A   C + P ++++E 
Sbjct: 77   LPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRLLASC-CENAPQVSIKEV 135

Query: 3675 NVKDGSFCLELKVPKSKLRENMWNFLERYGFIYG-YEECRTLLPCEVLEILKRIPAETKK 3499
               DG+  LELK P  + R + W FLE+YGF YG +   RTLLPCEV+EILKRIPAET++
Sbjct: 136  KTTDGACSLELKQPSRQARTS-WEFLEKYGFRYGDHHNTRTLLPCEVMEILKRIPAETRR 194

Query: 3498 KLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KL+ KG+FPQ+GYIL+ LPVPPNCLSVPDISDG +IMSS
Sbjct: 195  KLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSS 233


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 1325 bits (3428), Expect = 0.0
 Identities = 674/1129 (59%), Positives = 851/1129 (75%), Gaps = 10/1129 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQAE+I+SSRSG PNF++H+ EA  LQS + QYL VRG+TK  R + +++ V  ES
Sbjct: 246  KKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKES 305

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
             +++ KAW+EKM+TLFI KGSGFSSRSVITGDAY  V+++G+P EIAQ+ITFEE+V+VHN
Sbjct: 306  SESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSVHN 365

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQELVD KLCLTY+DG S YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 366  MRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 425

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+H VKINPLIC PL ADFDGDC+HLFYPQSLAAKAEVLELFSVE+QL
Sbjct: 426  KHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQL 485

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQL  D+LLSLK+MFK  FL K+ AQQLAM++S  L  PALLK     P W
Sbjct: 486  LSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPHW 545

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ ALPA F+CSGER++I  S  +K D+NRDVV S+ N+I+ ++F +KGS   L+
Sbjct: 546  TAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLK 605

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             FNSLQP+LMEN+FSEG+SVSLEDF I +++ + + ++ + ISPLL +LRST+NE+VELQ
Sbjct: 606  FFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQ 665

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            VENH+R VK PV  FIL SS LG LIDSKS++++ KVV           DRG++Y++TLV
Sbjct: 666  VENHIRDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLV 725

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+ + F  K+  +  D PS  +GLI++ FFHGL+ YE++  SIS+REV+VRSSRGL+EP
Sbjct: 726  EDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEP 785

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQF+Y V+ GTE +S  PAGEPVGVLAATA
Sbjct: 786  GTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATA 845

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SW++MKEI+LCKV  KNDL DRR ILYLNDC CG+ YC+E A
Sbjct: 846  MSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERA 905

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL++ +LK IA  F++EY+ QQ   E+  ++A LVGH+HLD+ +++ +      
Sbjct: 906  AYLVKNHLEKVSLKDIAKCFMIEYKSQQ-IPESFGSDAGLVGHVHLDKRKLQDLNITAQV 964

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAESSQVPCLQFSWQDTSACT 1019
            IL++CQE + + +KKK ++G + +   L  SE C F     ES   PCL F WQ      
Sbjct: 965  ILEKCQETVNTFRKKK-KVGNLFKKTILLVSESCSFQQCIDES---PCLMFFWQGADDVH 1020

Query: 1018 LEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXXX 839
            LE+TS ++A+ IC +LLETI+KGD R++ ANI+W  P+T +W+R PS+ QKG        
Sbjct: 1021 LERTSNILADMICPVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVL 1080

Query: 838  XXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTSI 659
                 K+ GD WR V+DSCLPV+HLI+T RSIPY IKQ+QE++G+SCAFD AV+RL+ S+
Sbjct: 1081 EKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSV 1140

Query: 658  RMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFEK 479
             MVAKGVLKEHLIL+ NSMTC G+LIGF TGGYK L RSL++Q+PFTEATLFTPRKCFEK
Sbjct: 1141 TMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEK 1200

Query: 478  AAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLD-QNAVDIYNFLQIVRTG 302
            AAEKCH DSLSS VASC++GK V VGTG+ F++LW+ KE  L+ + ++D+Y+FL +VR+ 
Sbjct: 1201 AAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRST 1260

Query: 301  TKEGEVISGCLGEEVDDMELENDYVELPLSPEH-PDGGKATFDDIAEFEPNLQPSQISEG 125
                E ++ CLG EVDD+ LE++  +  LSPEH     K TF+D AEF+  L  +Q +E 
Sbjct: 1261 AGGEESVTACLGAEVDDLMLEDE--DWNLSPEHNSSSDKPTFEDSAEFQDFL-GNQPAES 1317

Query: 124  NWGNNSSQTGESGGWGEWKVDKTSGS--ENP------GAASNSDAWAGW 2
            NW   SS    S   G W VDK  G+  E P       A +N  A +GW
Sbjct: 1318 NWEKISSLKDRSRSSGNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGW 1366



 Score =  204 bits (520), Expect(2) = 3e-49
 Identities = 100/162 (61%), Positives = 127/162 (78%), Gaps = 5/162 (3%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKG--QIRKNGEKDKSSACTHCL--DMPPITV 3685
            LPIP+YHPSH+ ELKR+LS+ICLKCL++K+   QI+ NG  ++  +C      +   I++
Sbjct: 77   LPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERLLSCCEVSIKECAQISI 136

Query: 3684 RESNVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAE 3508
            RE    DG+  LELK+P +S+LR+  WNFLERYGF YG +  R LLPCEV++ILKRIPAE
Sbjct: 137  REVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPLLPCEVMQILKRIPAE 196

Query: 3507 TKKKLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            T+KKL+ KGYFPQDGYILQ+LPVPPNCLSVP +SDG T+MSS
Sbjct: 197  TRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSS 238



 Score = 21.9 bits (45), Expect(2) = 3e-49
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D S+SMLKKVLK
Sbjct: 239  DLSISMLKKVLK 250


>emb|CDP18669.1| unnamed protein product [Coffea canephora]
          Length = 1946

 Score = 1324 bits (3427), Expect = 0.0
 Identities = 668/1125 (59%), Positives = 850/1125 (75%), Gaps = 10/1125 (0%)
 Frame = -3

Query: 3346 KQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNESDDTS 3167
            KQ E+IK+SRSG PNFESH++EAN+LQ ++AQY   RG+ K  R +  +F V+ ES+ +S
Sbjct: 244  KQIEVIKNSRSGMPNFESHQIEANDLQISVAQYFEFRGTGKASRDVDPRFGVSKESNTSS 303

Query: 3166 AKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHNMNHL 2987
             KAW+EKMKTLFI KGSGFSSRSVITGD YK V+EIGLP EIAQ+ITFEE+V+ HNMN+L
Sbjct: 304  TKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVNEIGLPFEIAQRITFEERVSQHNMNYL 363

Query: 2986 QELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTHKHSL 2807
            Q+LVD+KLCLTYRDG S YSL+EGSKGHT L+ GQVVHRRIMDGD+VFINRPP+THKHSL
Sbjct: 364  QKLVDEKLCLTYRDGMSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSL 423

Query: 2806 QAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQLLSSH 2627
            QA SVYIHD+HTVKINPLIC PL ADFDGDCIHLFYPQSLAA++EVLELFSVE+QLLSSH
Sbjct: 424  QALSVYIHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAARSEVLELFSVEKQLLSSH 483

Query: 2626 SGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQWTALQ 2447
            +G  NLQLA D+LLSLK+MFKKYF  +  A+QLAM+V + L  PA++K     P WT LQ
Sbjct: 484  TGNFNLQLATDSLLSLKLMFKKYFFDRVAAEQLAMFVPAALPMPAVVKYRSSGPFWTVLQ 543

Query: 2446 ILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALRVFNS 2267
            +LQ ALPA F+CSGERY+   SE+VK D+NRD++QS F D+I ++F  KG ++ LR FN 
Sbjct: 544  LLQTALPASFECSGERYLTHSSELVKLDFNRDLLQSTFIDVITSIFFSKGPKEVLRFFNF 603

Query: 2266 LQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQVENH 2087
            L PLLMEN++SEG+SV LEDF IPK+I   +++++Q ISPLLYH+RST +E ++LQ+EN 
Sbjct: 604  LTPLLMENLYSEGFSVCLEDFYIPKAIIEAVQQSLQDISPLLYHMRSTQSESIKLQLENF 663

Query: 2086 LRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLVEDMT 1907
            LRGVK PV NF+LKSS +G LIDSKSES++NKVV           D+G+ Y+ TLV D+ 
Sbjct: 664  LRGVKSPVSNFVLKSSAMGYLIDSKSESALNKVVQQIGFLGMQISDKGKFYSSTLVNDLA 723

Query: 1906 TFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEPGTLF 1727
              F+KK+  SG   PSE +GL+RSC F+GL+PY+++V SISSREV+VRS+RGLTEPGTLF
Sbjct: 724  QLFKKKYPSSG-HYPSEEYGLVRSCLFYGLDPYQEMVHSISSREVIVRSTRGLTEPGTLF 782

Query: 1726 KNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATAISNP 1547
            KNLMAILRDV+ICYDGTVRN CSNS+IQF+Y +  G   +S   AGEPVGVLAATA+SNP
Sbjct: 783  KNLMAILRDVIICYDGTVRNMCSNSIIQFEYGMNHGISFQSEFGAGEPVGVLAATAMSNP 842

Query: 1546 AYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENAAYSV 1367
            AYKAVLD       +WE+MKEI+LC VN KN+++DRR ILYLNDC CG+KYC+ENAAY V
Sbjct: 843  AYKAVLDSSPSSNSAWEMMKEILLCGVNFKNEVSDRRVILYLNDCGCGRKYCRENAAYVV 902

Query: 1366 QNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQILQR 1187
            +N L++ +LK +A   L+EYR+Q    E+ +T+  LVGHIHL+EA MK     +++IL +
Sbjct: 903  KNQLRKVSLKDVAFELLIEYRQQYSVYESSETDTGLVGHIHLNEAMMKSSNITMNEILSK 962

Query: 1186 CQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQDTSACTLEQ 1010
            C+E+I S +K+K ++G   + + L  S+ C F    A   ++ PCL+F  +D S   LEQ
Sbjct: 963  CEERIISYQKRK-KVGFKFKGVLLGVSDDCSFRQSSARKLAETPCLKFICRDASDYQLEQ 1021

Query: 1009 TSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXXXXXX 830
             S ++A +IC  LLET++KGDPRV+  NI+W++PDT++W+    K Q+G           
Sbjct: 1022 RSHVLAETICPALLETVIKGDPRVSSVNIIWISPDTSTWISSQCKSQRGELALDVVLEKD 1081

Query: 829  XXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTSIRMV 650
              KQ GD WR VMD+CLPV  LIDT RSIPY IKQ+QE++GISCAF+QAV RL+TS+ +V
Sbjct: 1082 AVKQTGDAWRVVMDACLPVTQLIDTNRSIPYAIKQVQELLGISCAFEQAVRRLSTSVMLV 1141

Query: 649  AKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFEKAAE 470
             KGVLK+HL+L+ANSMTC GNLIGFN GG KAL RSL+VQ+PFTEATL  PRKCFE+AAE
Sbjct: 1142 TKGVLKDHLVLLANSMTCAGNLIGFNIGGIKALSRSLDVQVPFTEATLSAPRKCFERAAE 1201

Query: 469  KCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQNA-VDIYNFLQIVRTGTKE 293
            KCH+DSLSS V SCS+GK VAVGTG+ F+IL + K++ L+Q A +D+Y+FLQ+VR  +  
Sbjct: 1202 KCHVDSLSSVVGSCSWGKHVAVGTGSPFDILLDTKKVELNQPAGIDVYDFLQLVRGSSGG 1261

Query: 292  GEVISGCLGEEVDDMELENDYVELPLSPEHPDGGKATFDDIAEFEPNLQPSQISEG---- 125
             E  + CLG E+++++LE++ +   LSP   D  + TF+D  E E NL   +  E     
Sbjct: 1262 DETNTTCLGAEIENLDLEDEAMTFDLSPVR-DSDQPTFEDRHELENNLANPRSKESIQRE 1320

Query: 124  -NWGNNSSQTGE-SGGWGEWKVDKTSGSENPGA--ASNSDAWAGW 2
              W  +S QT E  GGW     +K S ++N  A    +  AWA W
Sbjct: 1321 LGWERDSPQTAELGGGW-----EKASKAQNTSANVLVSDSAWASW 1360



 Score =  174 bits (442), Expect = 4e-40
 Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 4/160 (2%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMK--KGQIRKNGEKDKS-SACTHCLDMPPITVR 3682
            LPIP+YHP H+ ELKRLLS++CLKCL+++  K Q++  G  ++  S+C  C +   + + 
Sbjct: 75   LPIPIYHPDHVRELKRLLSLLCLKCLKIRNRKFQVKNVGVLERMLSSC--CEEASQVAIN 132

Query: 3681 ESNVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAET 3505
            E+   DG+  LELKVP K +L+ N+W+FLE+YG+ Y  +  R LL  EV+ +L+R+ ++T
Sbjct: 133  EARNPDGALYLELKVPSKIRLQGNVWSFLEKYGYRYD-KNPRPLLASEVMAMLRRLSSDT 191

Query: 3504 KKKLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMS 3385
            KKKL+AKGYFPQDGYILQ LPVPPNCLSVPDISDGT +MS
Sbjct: 192  KKKLSAKGYFPQDGYILQYLPVPPNCLSVPDISDGTNVMS 231


>ref|XP_011020393.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica] gi|743817375|ref|XP_011020394.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica] gi|743817379|ref|XP_011020395.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica] gi|743817383|ref|XP_011020396.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica]
          Length = 1916

 Score = 1321 bits (3420), Expect = 0.0
 Identities = 674/1129 (59%), Positives = 848/1129 (75%), Gaps = 10/1129 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            +K  KQAE+I+SSRSG PNF++H+ EA  LQS + QYL VRG+TK  R + +++ V  ES
Sbjct: 242  KKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKES 301

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
              ++ KAW+EKM+TLFI KGSGFSSRSVITGDAY  V+++G+P EIAQ+ITFEE+V++HN
Sbjct: 302  SKSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSMHN 361

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQELVD KLCLTY+DG S YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 362  MRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 421

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+H VKINPLIC PL ADFDGDC+HLFYPQSLAAKAEVLELFSVE+QL
Sbjct: 422  KHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQL 481

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQL  D+LLSLK+MFK  FL K+ AQQLAM++S  L  PALLK     P W
Sbjct: 482  LSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPHW 541

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ ALPA F+CSGER++I  S  +K D+NRDVV S+ N+I+ ++F +KGS   L+
Sbjct: 542  TAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLK 601

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             FNSLQP+LMEN+FSEG+SVSLEDF I +++ + + ++ + ISPLL +LRST+NE+VELQ
Sbjct: 602  FFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQ 661

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            VENH+R VK PV  FIL SS  G LIDSKS++++ KVV           DRG++Y++TLV
Sbjct: 662  VENHIRDVKQPVREFILTSSAFGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLV 721

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+ + F  K+  +  D PS  +GLI++ FFHGL+ YE++  SIS+REV+VRSSRGL+EP
Sbjct: 722  EDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEP 781

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQFDY V+ GTE +S  PAGEPVGVLAATA
Sbjct: 782  GTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFDYGVKVGTESQSLFPAGEPVGVLAATA 841

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SW++MKEI+LCKV  KNDL DRR ILYLNDC CG+ YC+E A
Sbjct: 842  MSNPAYKAVLDSTPSSNSSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERA 901

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL++ +LK IA  F++EY+ QQ   E+  ++A LVGH+HLD+ +++ +      
Sbjct: 902  AYLVKNHLEKVSLKDIAKCFMIEYKSQQ-IPESFGSDAGLVGHVHLDKRKLQDLNITAQV 960

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAESSQVPCLQFSWQDTSACT 1019
            IL++CQE + S +KKK ++G + +   L  SE C F     ES   PCL F WQ      
Sbjct: 961  ILEKCQETVNSFRKKK-KVGNLFKKTILLVSESCSFQQFIDES---PCLMFFWQGADDVH 1016

Query: 1018 LEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXXX 839
            LE+TS ++A+ IC +LLETI+KGD R++ ANI+W  P+TT+W+R PS+ QKG        
Sbjct: 1017 LERTSNILADMICPVLLETIIKGDHRISCANIIWATPETTTWIRNPSRTQKGELALDIVL 1076

Query: 838  XXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTSI 659
                 K+ GD WR V+DSCLPV+HLI+T RSIPY IKQ+QE++G+SCAFD AV+RL+ S+
Sbjct: 1077 EKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSV 1136

Query: 658  RMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFEK 479
             MVAKGVLKEHLIL+ NSMTC G+LIGF TGGYK L RSL++Q+PFTEATLFTPRKCFEK
Sbjct: 1137 TMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEK 1196

Query: 478  AAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLD-QNAVDIYNFLQIVRTG 302
            AAEKCH DSLSS VASC++GK V VGTG+ F++LW+ KE  L+ + ++D Y+FL +VR+ 
Sbjct: 1197 AAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDAYSFLNMVRST 1256

Query: 301  TKEGEVISGCLGEEVDDMELENDYVELPLSPEH-PDGGKATFDDIAEFEPNLQPSQISEG 125
                E ++ CLG EVDD+ LE++  +  LSPEH     K TF+D AEF+  L  +Q +E 
Sbjct: 1257 AGGEESVTACLGAEVDDLMLEDE--DWNLSPEHNSSSDKPTFEDSAEFQDFL-GNQPAES 1313

Query: 124  NWGNNSSQTGESGGWGEWKVDKTSGS--ENP------GAASNSDAWAGW 2
            NW   SS        G W VDK  G+  E P       A +N  A +GW
Sbjct: 1314 NWEKISSLKDRPRSSGNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGW 1362



 Score =  207 bits (528), Expect(2) = 4e-50
 Identities = 101/160 (63%), Positives = 127/160 (79%), Gaps = 3/160 (1%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKG--QIRKNGEKDKSSACTHCLDMPPITVRE 3679
            LPIP+YHPSH+ ELKR+LS+ICLKCL++K+   QI+ NG  ++  +C  C +   I++RE
Sbjct: 77   LPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERLLSC--CEECAQISIRE 134

Query: 3678 SNVKDGSFCLELKVP-KSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETK 3502
                DG+  LELK+P +S+LR   WNFLERYGF YG +  R LLPCEV++ILKRIPAET+
Sbjct: 135  VQNTDGACFLELKLPSRSRLRNGCWNFLERYGFRYGDDFTRPLLPCEVMQILKRIPAETR 194

Query: 3501 KKLAAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            KKL+ KGYFPQDGYILQ+LPVPPNCLSVP +SDG T+MSS
Sbjct: 195  KKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSS 234



 Score = 21.9 bits (45), Expect(2) = 4e-50
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 3380 DGSVSMLKKVLK 3345
            D S+SMLKKVLK
Sbjct: 235  DLSISMLKKVLK 246


>ref|XP_012449584.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2
            [Gossypium raimondii]
          Length = 1921

 Score = 1319 bits (3413), Expect = 0.0
 Identities = 672/1128 (59%), Positives = 845/1128 (74%), Gaps = 9/1128 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            RK  KQ EIIKSSRSG PNFESHEVEAN+LQSA+ QYL VRG+ K  R I +++ VN ++
Sbjct: 240  RKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDA 299

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
             D+S KAW+EKM+TLFI KGSGFSSRSVITGD YK+V+EIG+PSEIAQ+ITFEE+V +HN
Sbjct: 300  SDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVNMHN 359

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQ LVD KLCLTYRDGGS YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 360  MRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 419

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDCIHLFYPQSL+AKAEV ELFSVE+QL
Sbjct: 420  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQL 479

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLA D+LLSL++M K +  KKA AQQL+M++SS L  PA LK     P W
Sbjct: 480  LSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVAPCW 539

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ A PA  DCS +RY+I +S+I+K D+N+D++QS+ N+++ ++F +KG ++ L 
Sbjct: 540  TAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLN 599

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+F+EG++V LEDF + + +   ++K++Q ISPLLY LRSTYNE+VELQ
Sbjct: 600  FFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQ 659

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R  K P+ +FILK+S+LGNLIDS+S+S++NKVV           D+G+ Y++TLV
Sbjct: 660  MENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLV 719

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+   FQ  +    ID PS  FGLI+SCFF GL+PYE +V SIS+REV+VRS+RGL+EP
Sbjct: 720  EDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEP 779

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQF Y +   T  R   PAGEPVGVLAATA
Sbjct: 780  GTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSART--RPQFPAGEPVGVLAATA 837

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKV+ KND  DRR ILYL DC CG+KYC+ENA
Sbjct: 838  MSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENA 897

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL+R  LK IA  F++EY++QQ   E     A LVGHI L++  +K +  +V +
Sbjct: 898  AYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVSVQE 954

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQDTSAC 1022
            I  +CQE I S +KKK +     +   L  SE C       +    +PCL F +++T+  
Sbjct: 955  IHMKCQETINSFRKKK-KTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDD 1013

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             L+   Q++A+ I  +LL+T++KGDPR+  A I+WVNPD T+W+R PSK QKG       
Sbjct: 1014 NLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVV 1073

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ+GD WRTV+D CLPV+++IDT RSIPY IKQ+++++GISCAF+QAV+RL+TS
Sbjct: 1074 LEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTS 1133

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MV +GVLKEHL+L+ANSMTC GNLIGFN+GGYK L RSLN+Q+PFTEATLFTPRKCFE
Sbjct: 1134 VSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRKCFE 1193

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKC+ DSLSS VASCS+GKRVAVGTG+RF++LWN +E G DQ + +D+YNFL +V +
Sbjct: 1194 RAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWN-QESGSDQMSGMDVYNFLHMV-S 1251

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQPSQISE 128
            G       + CLGEEVDD+       E  LSP+H  G  K  F+D AEFE NL   Q + 
Sbjct: 1252 GAGGSNSNTACLGEEVDDL-----MDEWCLSPDHSTGLDKPVFEDAAEFENNLD-GQSAS 1305

Query: 127  GNWGNN------SSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
             NW  +      S    ++ GW +   D    +    ++   + W+GW
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGW 1353



 Score =  197 bits (502), Expect = 5e-47
 Identities = 92/157 (58%), Positives = 120/157 (76%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQIRKNGEKDKSSACTHCLDMPPITVRESN 3673
            LPIP+YHPSH+ ELKRLLS++CLKCL++K     K+G   +    + C + P ++++E  
Sbjct: 77   LPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLLSSCCENTPQVSIKEVK 136

Query: 3672 VKDGSFCLELKVPKSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKKKL 3493
              DG+  LELK P  + + N WNFLERYGF YG    RTLLPCEV+EILKRIP++T++KL
Sbjct: 137  TTDGACYLELKQPSRQSKTN-WNFLERYGFRYGDHHTRTLLPCEVVEILKRIPSQTRRKL 195

Query: 3492 AAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            + KG+FPQ+GYILQ LPVPPNCLSVPD+SDG ++MSS
Sbjct: 196  SGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSS 232


>gb|KJB67889.1| hypothetical protein B456_010G216600 [Gossypium raimondii]
          Length = 1883

 Score = 1319 bits (3413), Expect = 0.0
 Identities = 672/1128 (59%), Positives = 845/1128 (74%), Gaps = 9/1128 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            RK  KQ EIIKSSRSG PNFESHEVEAN+LQSA+ QYL VRG+ K  R I +++ VN ++
Sbjct: 240  RKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDA 299

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
             D+S KAW+EKM+TLFI KGSGFSSRSVITGD YK+V+EIG+PSEIAQ+ITFEE+V +HN
Sbjct: 300  SDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVNMHN 359

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQ LVD KLCLTYRDGGS YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 360  MRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 419

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDCIHLFYPQSL+AKAEV ELFSVE+QL
Sbjct: 420  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQL 479

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLA D+LLSL++M K +  KKA AQQL+M++SS L  PA LK     P W
Sbjct: 480  LSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVAPCW 539

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ A PA  DCS +RY+I +S+I+K D+N+D++QS+ N+++ ++F +KG ++ L 
Sbjct: 540  TAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLN 599

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+F+EG++V LEDF + + +   ++K++Q ISPLLY LRSTYNE+VELQ
Sbjct: 600  FFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQ 659

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R  K P+ +FILK+S+LGNLIDS+S+S++NKVV           D+G+ Y++TLV
Sbjct: 660  MENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLV 719

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+   FQ  +    ID PS  FGLI+SCFF GL+PYE +V SIS+REV+VRS+RGL+EP
Sbjct: 720  EDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEP 779

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQF Y +   T  R   PAGEPVGVLAATA
Sbjct: 780  GTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSART--RPQFPAGEPVGVLAATA 837

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKV+ KND  DRR ILYL DC CG+KYC+ENA
Sbjct: 838  MSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENA 897

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL+R  LK IA  F++EY++QQ   E     A LVGHI L++  +K +  +V +
Sbjct: 898  AYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVSVQE 954

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQDTSAC 1022
            I  +CQE I S +KKK +     +   L  SE C       +    +PCL F +++T+  
Sbjct: 955  IHMKCQETINSFRKKK-KTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDD 1013

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             L+   Q++A+ I  +LL+T++KGDPR+  A I+WVNPD T+W+R PSK QKG       
Sbjct: 1014 NLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVV 1073

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ+GD WRTV+D CLPV+++IDT RSIPY IKQ+++++GISCAF+QAV+RL+TS
Sbjct: 1074 LEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTS 1133

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MV +GVLKEHL+L+ANSMTC GNLIGFN+GGYK L RSLN+Q+PFTEATLFTPRKCFE
Sbjct: 1134 VSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRKCFE 1193

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKC+ DSLSS VASCS+GKRVAVGTG+RF++LWN +E G DQ + +D+YNFL +V +
Sbjct: 1194 RAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWN-QESGSDQMSGMDVYNFLHMV-S 1251

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQPSQISE 128
            G       + CLGEEVDD+       E  LSP+H  G  K  F+D AEFE NL   Q + 
Sbjct: 1252 GAGGSNSNTACLGEEVDDL-----MDEWCLSPDHSTGLDKPVFEDAAEFENNLD-GQSAS 1305

Query: 127  GNWGNN------SSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
             NW  +      S    ++ GW +   D    +    ++   + W+GW
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGW 1353



 Score =  197 bits (502), Expect = 5e-47
 Identities = 92/157 (58%), Positives = 120/157 (76%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQIRKNGEKDKSSACTHCLDMPPITVRESN 3673
            LPIP+YHPSH+ ELKRLLS++CLKCL++K     K+G   +    + C + P ++++E  
Sbjct: 77   LPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLLSSCCENTPQVSIKEVK 136

Query: 3672 VKDGSFCLELKVPKSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKKKL 3493
              DG+  LELK P  + + N WNFLERYGF YG    RTLLPCEV+EILKRIP++T++KL
Sbjct: 137  TTDGACYLELKQPSRQSKTN-WNFLERYGFRYGDHHTRTLLPCEVVEILKRIPSQTRRKL 195

Query: 3492 AAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            + KG+FPQ+GYILQ LPVPPNCLSVPD+SDG ++MSS
Sbjct: 196  SGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSS 232


>gb|KJB67888.1| hypothetical protein B456_010G216600 [Gossypium raimondii]
          Length = 1406

 Score = 1319 bits (3413), Expect = 0.0
 Identities = 672/1128 (59%), Positives = 845/1128 (74%), Gaps = 9/1128 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            RK  KQ EIIKSSRSG PNFESHEVEAN+LQSA+ QYL VRG+ K  R I +++ VN ++
Sbjct: 240  RKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDA 299

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
             D+S KAW+EKM+TLFI KGSGFSSRSVITGD YK+V+EIG+PSEIAQ+ITFEE+V +HN
Sbjct: 300  SDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVNMHN 359

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQ LVD KLCLTYRDGGS YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 360  MRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 419

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDCIHLFYPQSL+AKAEV ELFSVE+QL
Sbjct: 420  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQL 479

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLA D+LLSL++M K +  KKA AQQL+M++SS L  PA LK     P W
Sbjct: 480  LSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVAPCW 539

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ A PA  DCS +RY+I +S+I+K D+N+D++QS+ N+++ ++F +KG ++ L 
Sbjct: 540  TAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLN 599

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+F+EG++V LEDF + + +   ++K++Q ISPLLY LRSTYNE+VELQ
Sbjct: 600  FFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQ 659

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R  K P+ +FILK+S+LGNLIDS+S+S++NKVV           D+G+ Y++TLV
Sbjct: 660  MENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLV 719

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+   FQ  +    ID PS  FGLI+SCFF GL+PYE +V SIS+REV+VRS+RGL+EP
Sbjct: 720  EDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEP 779

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQF Y +   T  R   PAGEPVGVLAATA
Sbjct: 780  GTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSART--RPQFPAGEPVGVLAATA 837

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKV+ KND  DRR ILYL DC CG+KYC+ENA
Sbjct: 838  MSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENA 897

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL+R  LK IA  F++EY++QQ   E     A LVGHI L++  +K +  +V +
Sbjct: 898  AYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVSVQE 954

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQDTSAC 1022
            I  +CQE I S +KKK +     +   L  SE C       +    +PCL F +++T+  
Sbjct: 955  IHMKCQETINSFRKKK-KTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDD 1013

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             L+   Q++A+ I  +LL+T++KGDPR+  A I+WVNPD T+W+R PSK QKG       
Sbjct: 1014 NLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVV 1073

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ+GD WRTV+D CLPV+++IDT RSIPY IKQ+++++GISCAF+QAV+RL+TS
Sbjct: 1074 LEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTS 1133

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MV +GVLKEHL+L+ANSMTC GNLIGFN+GGYK L RSLN+Q+PFTEATLFTPRKCFE
Sbjct: 1134 VSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRKCFE 1193

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKC+ DSLSS VASCS+GKRVAVGTG+RF++LWN +E G DQ + +D+YNFL +V +
Sbjct: 1194 RAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWN-QESGSDQMSGMDVYNFLHMV-S 1251

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQPSQISE 128
            G       + CLGEEVDD+       E  LSP+H  G  K  F+D AEFE NL   Q + 
Sbjct: 1252 GAGGSNSNTACLGEEVDDL-----MDEWCLSPDHSTGLDKPVFEDAAEFENNLD-GQSAS 1305

Query: 127  GNWGNN------SSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
             NW  +      S    ++ GW +   D    +    ++   + W+GW
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGW 1353



 Score =  197 bits (502), Expect = 5e-47
 Identities = 92/157 (58%), Positives = 120/157 (76%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQIRKNGEKDKSSACTHCLDMPPITVRESN 3673
            LPIP+YHPSH+ ELKRLLS++CLKCL++K     K+G   +    + C + P ++++E  
Sbjct: 77   LPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLLSSCCENTPQVSIKEVK 136

Query: 3672 VKDGSFCLELKVPKSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKKKL 3493
              DG+  LELK P  + + N WNFLERYGF YG    RTLLPCEV+EILKRIP++T++KL
Sbjct: 137  TTDGACYLELKQPSRQSKTN-WNFLERYGFRYGDHHTRTLLPCEVVEILKRIPSQTRRKL 195

Query: 3492 AAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            + KG+FPQ+GYILQ LPVPPNCLSVPD+SDG ++MSS
Sbjct: 196  SGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSS 232


>ref|XP_012449583.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1
            [Gossypium raimondii] gi|763800932|gb|KJB67887.1|
            hypothetical protein B456_010G216600 [Gossypium
            raimondii]
          Length = 1966

 Score = 1319 bits (3413), Expect = 0.0
 Identities = 672/1128 (59%), Positives = 845/1128 (74%), Gaps = 9/1128 (0%)
 Frame = -3

Query: 3358 RKFSKQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNES 3179
            RK  KQ EIIKSSRSG PNFESHEVEAN+LQSA+ QYL VRG+ K  R I +++ VN ++
Sbjct: 240  RKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDA 299

Query: 3178 DDTSAKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHN 2999
             D+S KAW+EKM+TLFI KGSGFSSRSVITGD YK+V+EIG+PSEIAQ+ITFEE+V +HN
Sbjct: 300  SDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVNMHN 359

Query: 2998 MNHLQELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTH 2819
            M +LQ LVD KLCLTYRDGGS YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+TH
Sbjct: 360  MRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH 419

Query: 2818 KHSLQAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQL 2639
            KHSLQA SVY+HD+HTVKINPLIC PL ADFDGDCIHLFYPQSL+AKAEV ELFSVE+QL
Sbjct: 420  KHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQL 479

Query: 2638 LSSHSGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQW 2459
            LSSHSG LNLQLA D+LLSL++M K +  KKA AQQL+M++SS L  PA LK     P W
Sbjct: 480  LSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVAPCW 539

Query: 2458 TALQILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALR 2279
            TA QILQ A PA  DCS +RY+I +S+I+K D+N+D++QS+ N+++ ++F +KG ++ L 
Sbjct: 540  TAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLN 599

Query: 2278 VFNSLQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQ 2099
             F+SLQPLLMEN+F+EG++V LEDF + + +   ++K++Q ISPLLY LRSTYNE+VELQ
Sbjct: 600  FFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQ 659

Query: 2098 VENHLRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLV 1919
            +ENH+R  K P+ +FILK+S+LGNLIDS+S+S++NKVV           D+G+ Y++TLV
Sbjct: 660  MENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLV 719

Query: 1918 EDMTTFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEP 1739
            ED+   FQ  +    ID PS  FGLI+SCFF GL+PYE +V SIS+REV+VRS+RGL+EP
Sbjct: 720  EDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEP 779

Query: 1738 GTLFKNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATA 1559
            GTLFKNLMAILRDVVICYDGTVRN  SNS+IQF Y +   T  R   PAGEPVGVLAATA
Sbjct: 780  GTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSART--RPQFPAGEPVGVLAATA 837

Query: 1558 ISNPAYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENA 1379
            +SNPAYKAVLD       SWELMKEI+LCKV+ KND  DRR ILYL DC CG+KYC+ENA
Sbjct: 838  MSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENA 897

Query: 1378 AYSVQNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQ 1199
            AY V+NHL+R  LK IA  F++EY++QQ   E     A LVGHI L++  +K +  +V +
Sbjct: 898  AYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVSVQE 954

Query: 1198 ILQRCQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQDTSAC 1022
            I  +CQE I S +KKK +     +   L  SE C       +    +PCL F +++T+  
Sbjct: 955  IHMKCQETINSFRKKK-KTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDD 1013

Query: 1021 TLEQTSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXX 842
             L+   Q++A+ I  +LL+T++KGDPR+  A I+WVNPD T+W+R PSK QKG       
Sbjct: 1014 NLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVV 1073

Query: 841  XXXXXXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTS 662
                  KQ+GD WRTV+D CLPV+++IDT RSIPY IKQ+++++GISCAF+QAV+RL+TS
Sbjct: 1074 LEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTS 1133

Query: 661  IRMVAKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFE 482
            + MV +GVLKEHL+L+ANSMTC GNLIGFN+GGYK L RSLN+Q+PFTEATLFTPRKCFE
Sbjct: 1134 VSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRKCFE 1193

Query: 481  KAAEKCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRT 305
            +AAEKC+ DSLSS VASCS+GKRVAVGTG+RF++LWN +E G DQ + +D+YNFL +V +
Sbjct: 1194 RAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWN-QESGSDQMSGMDVYNFLHMV-S 1251

Query: 304  GTKEGEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQPSQISE 128
            G       + CLGEEVDD+       E  LSP+H  G  K  F+D AEFE NL   Q + 
Sbjct: 1252 GAGGSNSNTACLGEEVDDL-----MDEWCLSPDHSTGLDKPVFEDAAEFENNLD-GQSAS 1305

Query: 127  GNWGNN------SSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
             NW  +      S    ++ GW +   D    +    ++   + W+GW
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGW 1353



 Score =  197 bits (502), Expect = 5e-47
 Identities = 92/157 (58%), Positives = 120/157 (76%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQIRKNGEKDKSSACTHCLDMPPITVRESN 3673
            LPIP+YHPSH+ ELKRLLS++CLKCL++K     K+G   +    + C + P ++++E  
Sbjct: 77   LPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLLSSCCENTPQVSIKEVK 136

Query: 3672 VKDGSFCLELKVPKSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKKKL 3493
              DG+  LELK P  + + N WNFLERYGF YG    RTLLPCEV+EILKRIP++T++KL
Sbjct: 137  TTDGACYLELKQPSRQSKTN-WNFLERYGFRYGDHHTRTLLPCEVVEILKRIPSQTRRKL 195

Query: 3492 AAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSS 3382
            + KG+FPQ+GYILQ LPVPPNCLSVPD+SDG ++MSS
Sbjct: 196  SGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSS 232


>gb|KJB67890.1| hypothetical protein B456_010G216600 [Gossypium raimondii]
          Length = 1841

 Score = 1316 bits (3406), Expect = 0.0
 Identities = 670/1124 (59%), Positives = 843/1124 (75%), Gaps = 9/1124 (0%)
 Frame = -3

Query: 3346 KQAEIIKSSRSGPPNFESHEVEANELQSAIAQYLHVRGSTKGPRGIKSKFRVNNESDDTS 3167
            KQ EIIKSSRSG PNFESHEVEAN+LQSA+ QYL VRG+ K  R I +++ VN ++ D+S
Sbjct: 235  KQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDASDSS 294

Query: 3166 AKAWIEKMKTLFISKGSGFSSRSVITGDAYKRVDEIGLPSEIAQKITFEEKVTVHNMNHL 2987
             KAW+EKM+TLFI KGSGFSSRSVITGD YK+V+EIG+PSEIAQ+ITFEE+V +HNM +L
Sbjct: 295  TKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVNMHNMRYL 354

Query: 2986 QELVDKKLCLTYRDGGSMYSLKEGSKGHTSLKVGQVVHRRIMDGDIVFINRPPSTHKHSL 2807
            Q LVD KLCLTYRDGGS YSL+EGSKGHT L+ GQVVHRRIMDGDIVFINRPP+THKHSL
Sbjct: 355  QNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSL 414

Query: 2806 QAFSVYIHDEHTVKINPLICSPLGADFDGDCIHLFYPQSLAAKAEVLELFSVEQQLLSSH 2627
            QA SVY+HD+HTVKINPLIC PL ADFDGDCIHLFYPQSL+AKAEV ELFSVE+QLLSSH
Sbjct: 415  QALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQLLSSH 474

Query: 2626 SGKLNLQLANDALLSLKIMFKKYFLKKATAQQLAMYVSSGLQFPALLKACGPVPQWTALQ 2447
            SG LNLQLA D+LLSL++M K +  KKA AQQL+M++SS L  PA LK     P WTA Q
Sbjct: 475  SGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVAPCWTAFQ 534

Query: 2446 ILQNALPADFDCSGERYVIRQSEIVKFDYNRDVVQSIFNDIINAVFLKKGSQDALRVFNS 2267
            ILQ A PA  DCS +RY+I +S+I+K D+N+D++QS+ N+++ ++F +KG ++ L  F+S
Sbjct: 535  ILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLNFFDS 594

Query: 2266 LQPLLMENVFSEGYSVSLEDFCIPKSITRELRKNVQKISPLLYHLRSTYNEVVELQVENH 2087
            LQPLLMEN+F+EG++V LEDF + + +   ++K++Q ISPLLY LRSTYNE+VELQ+ENH
Sbjct: 595  LQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQMENH 654

Query: 2086 LRGVKVPVVNFILKSSTLGNLIDSKSESSINKVVXXXXXXXXXXFDRGRIYTRTLVEDMT 1907
            +R  K P+ +FILK+S+LGNLIDS+S+S++NKVV           D+G+ Y++TLVED+ 
Sbjct: 655  IRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLVEDVA 714

Query: 1906 TFFQKKFAVSGIDCPSEAFGLIRSCFFHGLNPYEKLVDSISSREVLVRSSRGLTEPGTLF 1727
              FQ  +    ID PS  FGLI+SCFF GL+PYE +V SIS+REV+VRS+RGL+EPGTLF
Sbjct: 715  HQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEPGTLF 774

Query: 1726 KNLMAILRDVVICYDGTVRNACSNSVIQFDYIVETGTEGRSFSPAGEPVGVLAATAISNP 1547
            KNLMAILRDVVICYDGTVRN  SNS+IQF Y +   T  R   PAGEPVGVLAATA+SNP
Sbjct: 775  KNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSART--RPQFPAGEPVGVLAATAMSNP 832

Query: 1546 AYKAVLDXXXXXXXSWELMKEIVLCKVNMKNDLNDRRAILYLNDCSCGKKYCKENAAYSV 1367
            AYKAVLD       SWELMKEI+LCKV+ KND  DRR ILYL DC CG+KYC+ENAAY V
Sbjct: 833  AYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENAAYLV 892

Query: 1366 QNHLKRRNLKAIANSFLVEYRKQQGSIENPDTNACLVGHIHLDEAEMKYVGRNVHQILQR 1187
            +NHL+R  LK IA  F++EY++QQ   E     A LVGHI L++  +K +  +V +I  +
Sbjct: 893  KNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVSVQEIHMK 949

Query: 1186 CQEKIGSIKKKKDRLGRILRALTLSASECCYFSPPDAES-SQVPCLQFSWQDTSACTLEQ 1010
            CQE I S +KKK +     +   L  SE C       +    +PCL F +++T+   L+ 
Sbjct: 950  CQETINSFRKKK-KTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDDNLDS 1008

Query: 1009 TSQLMANSICSILLETIVKGDPRVNMANIVWVNPDTTSWVRRPSKIQKGXXXXXXXXXXX 830
              Q++A+ I  +LL+T++KGDPR+  A I+WVNPD T+W+R PSK QKG           
Sbjct: 1009 AIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVVLEKS 1068

Query: 829  XXKQHGDTWRTVMDSCLPVIHLIDTRRSIPYGIKQLQEMIGISCAFDQAVERLTTSIRMV 650
              KQ+GD WRTV+D CLPV+++IDT RSIPY IKQ+++++GISCAF+QAV+RL+TS+ MV
Sbjct: 1069 AVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTSVSMV 1128

Query: 649  AKGVLKEHLILVANSMTCTGNLIGFNTGGYKALFRSLNVQIPFTEATLFTPRKCFEKAAE 470
             +GVLKEHL+L+ANSMTC GNLIGFN+GGYK L RSLN+Q+PFTEATLFTPRKCFE+AAE
Sbjct: 1129 TRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRKCFERAAE 1188

Query: 469  KCHLDSLSSTVASCSFGKRVAVGTGARFEILWNKKEMGLDQ-NAVDIYNFLQIVRTGTKE 293
            KC+ DSLSS VASCS+GKRVAVGTG+RF++LWN +E G DQ + +D+YNFL +V +G   
Sbjct: 1189 KCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWN-QESGSDQMSGMDVYNFLHMV-SGAGG 1246

Query: 292  GEVISGCLGEEVDDMELENDYVELPLSPEHPDG-GKATFDDIAEFEPNLQPSQISEGNWG 116
                + CLGEEVDD+       E  LSP+H  G  K  F+D AEFE NL   Q +  NW 
Sbjct: 1247 SNSNTACLGEEVDDL-----MDEWCLSPDHSTGLDKPVFEDAAEFENNLD-GQSASANWE 1300

Query: 115  NN------SSQTGESGGWGEWKVDKTSGSENPGAASNSDAWAGW 2
             +      S    ++ GW +   D    +    ++   + W+GW
Sbjct: 1301 KDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGW 1344



 Score =  199 bits (505), Expect = 2e-47
 Identities = 96/170 (56%), Positives = 126/170 (74%)
 Frame = -1

Query: 3852 LPIPVYHPSHLGELKRLLSIICLKCLRMKKGQIRKNGEKDKSSACTHCLDMPPITVRESN 3673
            LPIP+YHPSH+ ELKRLLS++CLKCL++K     K+G   +    + C + P ++++E  
Sbjct: 77   LPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLLSSCCENTPQVSIKEVK 136

Query: 3672 VKDGSFCLELKVPKSKLRENMWNFLERYGFIYGYEECRTLLPCEVLEILKRIPAETKKKL 3493
              DG+  LELK P  + + N WNFLERYGF YG    RTLLPCEV+EILKRIP++T++KL
Sbjct: 137  TTDGACYLELKQPSRQSKTN-WNFLERYGFRYGDHHTRTLLPCEVVEILKRIPSQTRRKL 195

Query: 3492 AAKGYFPQDGYILQKLPVPPNCLSVPDISDGTTIMSSGWFCVNAEESSQS 3343
            + KG+FPQ+GYILQ LPVPPNCLSVPD+SDG ++MSS    V   +SS+S
Sbjct: 196  SGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSSVLKQVEIIKSSRS 245