BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00006851
         (1361 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chlorop...   675   0.0  
ref|XP_011045289.1| PREDICTED: CRS2-associated factor 2, chlorop...   647   0.0  
ref|XP_008446191.1| PREDICTED: CRS2-associated factor 2, chlorop...   644   0.0  
gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]         644   0.0  
ref|XP_002315689.2| hypothetical protein POPTR_0010s05230g [Popu...   641   0.0  
ref|XP_012085424.1| PREDICTED: CRS2-associated factor 2, chlorop...   638   e-180
ref|XP_004509634.1| PREDICTED: CRS2-associated factor 2, chlorop...   637   e-180
ref|XP_007044701.1| RNA-binding CRS1 / YhbY (CRM) domain-contain...   634   e-179
ref|XP_004135256.2| PREDICTED: CRS2-associated factor 2, chlorop...   633   e-178
ref|XP_010026662.1| PREDICTED: CRS2-associated factor 2, chlorop...   628   e-177
ref|XP_013446181.1| CRS2-associated factor 1 [Medicago truncatul...   622   e-175
ref|XP_012479367.1| PREDICTED: CRS2-associated factor 2, chlorop...   619   e-174
ref|XP_010270955.1| PREDICTED: CRS2-associated factor 2, chlorop...   618   e-174
ref|XP_006438328.1| hypothetical protein CICLE_v10031138mg [Citr...   618   e-174
ref|XP_006483899.1| PREDICTED: CRS2-associated factor 2, chlorop...   617   e-174
gb|KJB31209.1| hypothetical protein B456_005G181000 [Gossypium r...   617   e-174
gb|KHG22318.1| hypothetical protein F383_04491 [Gossypium arboreum]   614   e-173
ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]...   614   e-173
ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arab...   613   e-172
ref|XP_006416086.1| hypothetical protein EUTSA_v10007246mg [Eutr...   612   e-172

>ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
            gi|297739063|emb|CBI28552.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  675 bits (1742), Expect = 0.0
 Identities = 329/415 (79%), Positives = 357/415 (86%)
 Frame = -1

Query: 1247 KSQKSITKRPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLP 1068
            KSQKS   RPP +  T   PAFKT H R+KYYKPVSDGVI+S+GDRSV+IGESGVSYLLP
Sbjct: 46   KSQKS--SRPPTKPPT---PAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLP 100

Query: 1067 GAPFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPP 888
            GAPFEFQFSYSETPK KPLAIREPAFLPF PPTMPRPWTGKAPLKKSKK IPLFDSFNPP
Sbjct: 101  GAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPP 160

Query: 887  PVGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRD 708
            P G KGVK+VEMPGPFPLG+FP EG TREEILGE L++ E+RMLVKP+LSHNRQVNLGRD
Sbjct: 161  PPGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRD 220

Query: 707  GLTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRG 528
            GLTHNMLELIH HWKRQR+CKVRC+GVPT+DMDNVC+HLEEKTGGKIIHRVGGV+YLFRG
Sbjct: 221  GLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRG 280

Query: 527  RNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGI 348
            RNYNYRTRPQYPVMLWKPA PVYPKLIQEAPEGLTKFEA  +  KGKNL+PIC+L KNG+
Sbjct: 281  RNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGV 340

Query: 347  YMTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKE 168
            Y++LVKDVRDAFEGSPLVKIDC+GMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRG  
Sbjct: 341  YISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHG 400

Query: 167  WKSMYPEAPPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            WKSMY  AP  +        S    SG   S + RL  +   +SPK +S WK AI
Sbjct: 401  WKSMYQGAPSFLIPVVADVASGLEGSGIPKSNHHRLDTKAVSASPKMMSLWKSAI 455


>ref|XP_011045289.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Populus
            euphratica]
          Length = 559

 Score =  647 bits (1668), Expect = 0.0
 Identities = 312/415 (75%), Positives = 351/415 (84%), Gaps = 5/415 (1%)
 Frame = -1

Query: 1232 ITKRPP--NESTTTTSPAFKTFHRRTKYYKPVSDG--VISSEGDRSVIIGESGVSYLLPG 1065
            I K PP   +S  + +PAFK  H RTKYYKPV DG  VI+S+GDRSV++G+SGVSYLLPG
Sbjct: 41   IPKYPPPLKKSKNSANPAFKIPHLRTKYYKPVKDGGGVIASDGDRSVLVGDSGVSYLLPG 100

Query: 1064 APFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP 885
            APFEFQFSYSETPKVKPLAIREPAFLPF PPTMPRPWTGK PLK SKK IP+FDSFNPPP
Sbjct: 101  APFEFQFSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKPPLKTSKKKIPVFDSFNPPP 160

Query: 884  VGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDG 705
             G KGVK VEMPGP+P G+FP+EG +REEILGE L   E++ML+KPHLS NRQVNLGRDG
Sbjct: 161  AGKKGVKYVEMPGPYPFGKFPEEGKSREEILGEPLKTWEIKMLIKPHLSDNRQVNLGRDG 220

Query: 704  LTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGR 525
            LTHNMLEL+H HWKR+R+CKVRC+GVPTVDMDNVC HLEEKTGGKIIHRVGGV+YLFRGR
Sbjct: 221  LTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVGGVVYLFRGR 280

Query: 524  NYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIY 345
            NYNYRTRPQYPVMLWKPA PVYPKLIQEAPEGLTK EA    KKGKNLLPICKLAKNG+Y
Sbjct: 281  NYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKAEADEFRKKGKNLLPICKLAKNGVY 340

Query: 344  MTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEW 165
            +TLV+DVR AFEGSPLVK+DC+GM  SDYKK+GAKLK+LVPCVLLSFDDEQIL WRG++W
Sbjct: 341  ITLVRDVRTAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGQDW 400

Query: 164  KSMYPEAPPSVSVSNHSN-DSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            KSMYPEA PS+S     +  S S +SG+     +    ++  SSPK +  WKRA+
Sbjct: 401  KSMYPEAQPSISFPAELDIASGSDDSGKSDDDCDNSDAKIVSSSPKMMLLWKRAL 455


>ref|XP_008446191.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis melo]
          Length = 611

 Score =  644 bits (1661), Expect = 0.0
 Identities = 316/424 (74%), Positives = 355/424 (83%), Gaps = 14/424 (3%)
 Frame = -1

Query: 1232 ITKRPPNESTT--------TTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSY 1077
            I K PP +S T        + +PA KTFHRR+KYYKPV DGVISS G+R+V+IG+SGVSY
Sbjct: 92   IPKYPPPKSRTLRTNNPPKSPNPALKTFHRRSKYYKPVKDGVISSNGERAVVIGDSGVSY 151

Query: 1076 LLPGAPFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSF 897
            LLPGAPFEFQ+SYSETP VKP+AIREPAFLPF PPTMPRPWTGKAPLK SKK IPLFDSF
Sbjct: 152  LLPGAPFEFQYSYSETPNVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSF 211

Query: 896  NPPPVGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNL 717
            NPPP G KGVKQV++PGPFPLG++PKEG +REEILGE L   E+RMLVKPHLSHNRQVNL
Sbjct: 212  NPPPPGTKGVKQVQLPGPFPLGQYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNL 271

Query: 716  GRDGLTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYL 537
            GRDGLTHNMLELIH HWKRQR+CKVRC+GVPTVDMDN+C+H+EEKTGGKIIHRVGGVLYL
Sbjct: 272  GRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYL 331

Query: 536  FRGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAK 357
            FRGRNYNYRTRPQYPVMLWKPA PVYPKLIQEAPEGLTK EA  +  KGKNLLPICKLAK
Sbjct: 332  FRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAK 391

Query: 356  NGIYMTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWR 177
            NG+Y++LV DVR AFEGS LVKIDC GMH SDYKK+GAKLKELVPCVLLSFD+EQIL WR
Sbjct: 392  NGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWR 451

Query: 176  GKEWKSMYPE---AP-PSVSVSNHSNDSA--SLNSGELYSANERLVPELEISSPKFLSRW 15
            GK+WKS+  +   AP PS + SN S  S+  S+ + +L + N   +     +SPK    W
Sbjct: 452  GKDWKSVISDDRSAPLPSRASSNDSLGSSGESVENSDLLNGNHHTIK----TSPKMKLLW 507

Query: 14   KRAI 3
            +RAI
Sbjct: 508  ERAI 511


>gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
          Length = 603

 Score =  644 bits (1661), Expect = 0.0
 Identities = 316/424 (74%), Positives = 355/424 (83%), Gaps = 14/424 (3%)
 Frame = -1

Query: 1232 ITKRPPNESTT--------TTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSY 1077
            I K PP +S T        + +PA KTFHRR+KYYKPV DGVISS G+R+V+IG+SGVSY
Sbjct: 84   IPKYPPPKSRTLRTNNPPKSPNPALKTFHRRSKYYKPVKDGVISSNGERAVVIGDSGVSY 143

Query: 1076 LLPGAPFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSF 897
            LLPGAPFEFQ+SYSETP VKP+AIREPAFLPF PPTMPRPWTGKAPLK SKK IPLFDSF
Sbjct: 144  LLPGAPFEFQYSYSETPNVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSF 203

Query: 896  NPPPVGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNL 717
            NPPP G KGVKQV++PGPFPLG++PKEG +REEILGE L   E+RMLVKPHLSHNRQVNL
Sbjct: 204  NPPPPGTKGVKQVQLPGPFPLGQYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNL 263

Query: 716  GRDGLTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYL 537
            GRDGLTHNMLELIH HWKRQR+CKVRC+GVPTVDMDN+C+H+EEKTGGKIIHRVGGVLYL
Sbjct: 264  GRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYL 323

Query: 536  FRGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAK 357
            FRGRNYNYRTRPQYPVMLWKPA PVYPKLIQEAPEGLTK EA  +  KGKNLLPICKLAK
Sbjct: 324  FRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAK 383

Query: 356  NGIYMTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWR 177
            NG+Y++LV DVR AFEGS LVKIDC GMH SDYKK+GAKLKELVPCVLLSFD+EQIL WR
Sbjct: 384  NGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWR 443

Query: 176  GKEWKSMYPE---AP-PSVSVSNHSNDSA--SLNSGELYSANERLVPELEISSPKFLSRW 15
            GK+WKS+  +   AP PS + SN S  S+  S+ + +L + N   +     +SPK    W
Sbjct: 444  GKDWKSVISDDRSAPLPSRASSNDSLGSSGESVENSDLLNGNHHTIK----TSPKMKLLW 499

Query: 14   KRAI 3
            +RAI
Sbjct: 500  ERAI 503


>ref|XP_002315689.2| hypothetical protein POPTR_0010s05230g [Populus trichocarpa]
            gi|550329113|gb|EEF01860.2| hypothetical protein
            POPTR_0010s05230g [Populus trichocarpa]
          Length = 557

 Score =  641 bits (1654), Expect = 0.0
 Identities = 309/415 (74%), Positives = 350/415 (84%), Gaps = 5/415 (1%)
 Frame = -1

Query: 1232 ITKRPP--NESTTTTSPAFKTFHRRTKYYKPVSDG--VISSEGDRSVIIGESGVSYLLPG 1065
            I K PP   +S  + +PAFK  H RTKYYKPV DG  VI+S+GDRSV++G+SGVSYLLPG
Sbjct: 39   IPKYPPPLKKSKNSANPAFKIPHLRTKYYKPVKDGGGVIASDGDRSVLVGDSGVSYLLPG 98

Query: 1064 APFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP 885
            APFEFQFSYSETPKVKPLAIREPAFLPF PPTMPRPWTGK PLK SKK IP+FDSFNPPP
Sbjct: 99   APFEFQFSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKPPLKTSKKKIPVFDSFNPPP 158

Query: 884  VGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDG 705
             G KGVK VEMPGP+P G+FP+EG +REEILGE L   E+++L+KPHLS NRQVNLG DG
Sbjct: 159  AGKKGVKYVEMPGPYPFGKFPEEGKSREEILGEPLKTWEIKLLIKPHLSDNRQVNLGEDG 218

Query: 704  LTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGR 525
            LTHNMLEL+H HWKR+R+CKVRC+GVPTVDMDNVC HLEEKTGGKIIHRVGGV+YLFRGR
Sbjct: 219  LTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVGGVVYLFRGR 278

Query: 524  NYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIY 345
            NYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTK +A    KKGKNLLPICKLAKNG+Y
Sbjct: 279  NYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAQADEFRKKGKNLLPICKLAKNGVY 338

Query: 344  MTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEW 165
            +TLV+DVR AFEGSPLVK+DC+GM  SDYKK+GAKLK+LVPCVLLSFDDEQIL WRG++W
Sbjct: 339  ITLVRDVRAAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGQDW 398

Query: 164  KSMYPEAPPSVSVSNHSN-DSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            KSMYPEA PS+S     +  S S +SG+     +    ++  SSPK +  WK A+
Sbjct: 399  KSMYPEARPSISFPAELDIASGSDDSGKSDDDCDNSDAKILSSSPKMMLLWKHAL 453


>ref|XP_012085424.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
            gi|643713951|gb|KDP26616.1| hypothetical protein
            JCGZ_17774 [Jatropha curcas]
          Length = 558

 Score =  638 bits (1645), Expect = e-180
 Identities = 302/410 (73%), Positives = 350/410 (85%), Gaps = 2/410 (0%)
 Frame = -1

Query: 1226 KRPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAPFEFQ 1047
            K+  N  T+T +PAFK  HRRTKYYKPV DGV+SS+GDRSV+IGE+G+SY LPGAPFEFQ
Sbjct: 45   KKSKNSKTSTPNPAFKLPHRRTKYYKPVKDGVVSSDGDRSVVIGENGISYQLPGAPFEFQ 104

Query: 1046 FSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVGMKGV 867
            +SYSETPKVKPLAIREPAFLPF PPTMPRPWTGKAPLKKSKK IPLFDSFNPPP   KGV
Sbjct: 105  YSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPDKKGV 164

Query: 866  KQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLTHNML 687
              +EMP PFP+G+FP+EG TR+EILG+ L + E++ML+KP  S NRQVNLGRDGLTHNML
Sbjct: 165  NFMEMPRPFPMGKFPEEGKTRKEILGQPLKKWEIKMLIKPLASDNRQVNLGRDGLTHNML 224

Query: 686  ELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNYNYRT 507
            +LIH HW+RQ++CKVRC+G+PTVDMDN+C+HLEEKTGGK+IHRVGGV+YLF GRNY+YRT
Sbjct: 225  DLIHSHWRRQQVCKVRCKGIPTVDMDNICHHLEEKTGGKVIHRVGGVVYLFCGRNYDYRT 284

Query: 506  RPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMTLVKD 327
            RPQYPVM+WKPA PVYPKLIQEAPEGLTK EA    KKGKNLLPICKLAKNG+Y+TLVKD
Sbjct: 285  RPQYPVMIWKPAAPVYPKLIQEAPEGLTKAEADEFRKKGKNLLPICKLAKNGVYITLVKD 344

Query: 326  VRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKSMYPE 147
            VR+AFEGSPLVKIDC+GM+ SDYKK+GAKLKELVPCVLLSFDDEQIL WRG+ WK MYPE
Sbjct: 345  VRNAFEGSPLVKIDCKGMNPSDYKKLGAKLKELVPCVLLSFDDEQILMWRGQNWKPMYPE 404

Query: 146  --APPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
              + P V +++ S+DS   +  +  + +   V     SSPK +S WKRAI
Sbjct: 405  GRSVPEVDIASDSDDSGKFDD-DCDNPDANTVR----SSPKMMSLWKRAI 449


>ref|XP_004509634.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Cicer arietinum]
          Length = 556

 Score =  637 bits (1642), Expect = e-180
 Identities = 312/417 (74%), Positives = 349/417 (83%), Gaps = 4/417 (0%)
 Frame = -1

Query: 1241 QKSITKRPPNESTTTTSPAFKTFHRRTKYYKPVS-DGVISSEGDRSVIIGESGVSYLLPG 1065
            +KS T  PPN       PA K +HR +KYYKP+  +GV++S+GDRSVIIGESGVSYLLPG
Sbjct: 47   KKSQTPPPPN-------PALK-YHRNSKYYKPIQQNGVLTSDGDRSVIIGESGVSYLLPG 98

Query: 1064 APFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP 885
            APFEFQFSYSETPKVKPLAIREPAFLPF PPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP
Sbjct: 99   APFEFQFSYSETPKVKPLAIREPAFLPFEPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP 158

Query: 884  VGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDG 705
             GMKGVKQVEMPGPFP+G+FP+EGM+REEILGE L R E++MLVKP  S NRQVNLGRDG
Sbjct: 159  PGMKGVKQVEMPGPFPVGKFPEEGMSREEILGEPLKRWEIQMLVKPMTSDNRQVNLGRDG 218

Query: 704  LTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGR 525
            LTHNMLELIH HWKR+R+CK+RC+GVPTVDMDNVC H+EEK GGKIIHRVGGV+YLFRGR
Sbjct: 219  LTHNMLELIHSHWKRRRVCKIRCKGVPTVDMDNVCRHIEEKAGGKIIHRVGGVVYLFRGR 278

Query: 524  NYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIY 345
            NYNYRTRPQYPVMLWKPA PVYPKLIQ+AP GL K EA  + KKGK++LPICKLAKNG+Y
Sbjct: 279  NYNYRTRPQYPVMLWKPAAPVYPKLIQDAPGGLAKAEADGLRKKGKSMLPICKLAKNGVY 338

Query: 344  MTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEW 165
             +LVKDVRDAFEGSPLVKIDC+G+  SDYKK+GAKLK+LVPCVLLSFDDEQIL WRGKEW
Sbjct: 339  TSLVKDVRDAFEGSPLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKEW 398

Query: 164  KSMYPEAP---PSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            KS YP+AP   P++  +    D+ S + G +              SPK LS WK AI
Sbjct: 399  KSKYPQAPVFTPNLDNTGKVGDNQSNHIGNI--------------SPKMLSLWKSAI 441


>ref|XP_007044701.1| RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Theobroma
            cacao] gi|508708636|gb|EOY00533.1| RNA-binding CRS1 /
            YhbY (CRM) domain-containing protein [Theobroma cacao]
          Length = 562

 Score =  634 bits (1634), Expect = e-179
 Identities = 305/410 (74%), Positives = 345/410 (84%), Gaps = 2/410 (0%)
 Frame = -1

Query: 1226 KRPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAPFEFQ 1047
            KR P  +   ++PA    HRR+ Y KPV  GVISS+GDR V+IGE+GVSY LPGAPFEFQ
Sbjct: 46   KRNPQRTLPQSNPAISLPHRRSNYRKPVKKGVISSDGDRCVVIGENGVSYQLPGAPFEFQ 105

Query: 1046 FSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVGMKGV 867
            FSYSETPK +P+AIREPAFLPF PPTMPRPWTGKAPL KSKK IPLFDSFNPPP   KGV
Sbjct: 106  FSYSETPKAEPIAIREPAFLPFAPPTMPRPWTGKAPLIKSKKKIPLFDSFNPPPPDKKGV 165

Query: 866  KQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLTHNML 687
            K VEMPGPFP G++PKEG TREEILGE L + E++MLVKP LS NRQVNLGRDGLTHNML
Sbjct: 166  KYVEMPGPFPYGKYPKEGKTREEILGEPLKKWEIKMLVKPLLSDNRQVNLGRDGLTHNML 225

Query: 686  ELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNYNYRT 507
            +LIH HWKR+R+CK++C+GVPTVDMDNVC H+EEKTGGKIIHRVGGV+YLFRGRNYNYRT
Sbjct: 226  DLIHTHWKRRRVCKIKCKGVPTVDMDNVCRHIEEKTGGKIIHRVGGVVYLFRGRNYNYRT 285

Query: 506  RPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMTLVKD 327
            RPQYPVMLWKPA PVYPKLIQEAPEGLTK E   + KKGK+LLPICKLAKNG+Y +LVKD
Sbjct: 286  RPQYPVMLWKPAAPVYPKLIQEAPEGLTKAETDVLRKKGKSLLPICKLAKNGVYASLVKD 345

Query: 326  VRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKSMYPE 147
            VRDAFEGSPLVKIDC+GMHASDYKKIGAKLKEL PCVLLSFDDEQIL WRG++WKSMYPE
Sbjct: 346  VRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELAPCVLLSFDDEQILMWRGQDWKSMYPE 405

Query: 146  APPSVSVSNHSNDSASLNSGELYSANERLVPELE--ISSPKFLSRWKRAI 3
            AP ++  S     S   +S +  SA++   P+++  ISSPK ++ W  AI
Sbjct: 406  APSTLLPSKSGISSGLDDSAK--SADDCHTPDIKNGISSPKMMTLWNNAI 453


>ref|XP_004135256.2| PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis sativus]
            gi|700196613|gb|KGN51790.1| hypothetical protein
            Csa_5G600920 [Cucumis sativus]
          Length = 556

 Score =  633 bits (1633), Expect = e-178
 Identities = 313/424 (73%), Positives = 348/424 (82%), Gaps = 14/424 (3%)
 Frame = -1

Query: 1232 ITKRPPNESTTTTS--------PAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSY 1077
            I K PP +S T  +        PA KTFH R+KYYKPV DGVISS G+R+V+IG+SGVSY
Sbjct: 37   IPKYPPPKSRTLRTNNPPKPPNPALKTFHHRSKYYKPVKDGVISSNGERAVVIGDSGVSY 96

Query: 1076 LLPGAPFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSF 897
             LPGAPFEFQ+SYSETPKVKP+AIREPAFLPF PPTMPRPWTGKAPLK SKK IPLFDSF
Sbjct: 97   HLPGAPFEFQYSYSETPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSF 156

Query: 896  NPPPVGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNL 717
            NPPP G KGVK V++PGPFPLG+ PKEG +REEILGE L   E+RMLVKPHLSHNRQVNL
Sbjct: 157  NPPPPGTKGVKLVQLPGPFPLGQHPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNL 216

Query: 716  GRDGLTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYL 537
            GRDGLTHNMLELIH HWKRQR+CKVRC+GVPTVDMDN+C+H+EEKTGGKIIHRVGGVLYL
Sbjct: 217  GRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYL 276

Query: 536  FRGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAK 357
            FRGRNYNYRTRPQYPVMLWKPA PVYPKLIQEAPEGLTK EA  +  KGKNLLPICKLAK
Sbjct: 277  FRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAK 336

Query: 356  NGIYMTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWR 177
            NG+Y++LV DVR AFEGS LVKIDC GMH SDYKK+GAKLKELVPCVLLSFD+EQIL WR
Sbjct: 337  NGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWR 396

Query: 176  GKEWKSMYPE---AP-PSVSVSNHS--NDSASLNSGELYSANERLVPELEISSPKFLSRW 15
            GK+WKS+  +   AP PS + SN S  +   SL + +L   N   +     +SPK    W
Sbjct: 397  GKDWKSIISDDRSAPLPSRASSNDSLGSPGESLENSDLLHGNHHTIK----TSPKMKLLW 452

Query: 14   KRAI 3
            + AI
Sbjct: 453  EHAI 456


>ref|XP_010026662.1| PREDICTED: CRS2-associated factor 2, chloroplastic, partial
            [Eucalyptus grandis]
          Length = 514

 Score =  628 bits (1620), Expect = e-177
 Identities = 305/411 (74%), Positives = 341/411 (82%), Gaps = 5/411 (1%)
 Frame = -1

Query: 1220 PPNESTTTTSPAFKTFHRRTKYYKPV--SDGVISSEGDRSVIIGESGVSYLLPGAPFEFQ 1047
            PPN       PAFKT HR ++YYKP+     V+SS+GDRSV++GESGVSYLLPGAPFEFQ
Sbjct: 5    PPN-------PAFKTPHRNSRYYKPIRPDSPVVSSDGDRSVVVGESGVSYLLPGAPFEFQ 57

Query: 1046 FSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSK---KNIPLFDSFNPPPVGM 876
            +SYSETP  +PLA+REPAFLPF PPTMPRPWTGKAPLK SK   K IPLFDSF+PPP G 
Sbjct: 58   YSYSETPSARPLAMREPAFLPFAPPTMPRPWTGKAPLKGSKEKKKKIPLFDSFDPPPAGK 117

Query: 875  KGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLTH 696
            KGVK VEMPGPF LG+ PK+G TREEILGE L R E++MLVKPHLS NRQVNLGRDGLTH
Sbjct: 118  KGVKYVEMPGPFHLGQRPKDGRTREEILGEPLKRWEIKMLVKPHLSDNRQVNLGRDGLTH 177

Query: 695  NMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNYN 516
            NMLEL+H HWKR+R+CKVRCRGVPTVDMDNVC  LEEKTGG+IIHRVGG++YLFRGRNYN
Sbjct: 178  NMLELVHSHWKRRRVCKVRCRGVPTVDMDNVCQRLEEKTGGRIIHRVGGIVYLFRGRNYN 237

Query: 515  YRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMTL 336
            YRTRPQYP+MLWKPA PVYPKLIQEAPEGLTK EA N+ K+GKNLLPICKLAKNGIY+TL
Sbjct: 238  YRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKAEADNLRKRGKNLLPICKLAKNGIYLTL 297

Query: 335  VKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKSM 156
            VKDVR+AFEGSPLVKIDCRGMHASDYKK+GAKLK+LVPCVLLSFDDEQIL WRGK+WKSM
Sbjct: 298  VKDVRNAFEGSPLVKIDCRGMHASDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKDWKSM 357

Query: 155  YPEAPPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            YPE    ++    ++D+  +                 ISSPK  S W+RAI
Sbjct: 358  YPEPTVPLAEKGETDDACKVRD-----------VNKVISSPKMTSLWERAI 397


>ref|XP_013446181.1| CRS2-associated factor 1 [Medicago truncatula]
            gi|657374680|gb|KEH20208.1| CRS2-associated factor 1
            [Medicago truncatula]
          Length = 574

 Score =  622 bits (1605), Expect = e-175
 Identities = 305/417 (73%), Positives = 345/417 (82%), Gaps = 4/417 (0%)
 Frame = -1

Query: 1241 QKSITKRPPNESTTTTSPAFKTFHRRTKYYKPVSDGV-ISSEGDRSVIIGESGVSYLLPG 1065
            +KS    PPN +     PA K  HR +KYYKP++    I S  DRSVIIGESGVSYLLPG
Sbjct: 47   RKSHPPPPPNPN-----PALK-HHRNSKYYKPITHPTTIPSSDDRSVIIGESGVSYLLPG 100

Query: 1064 APFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP 885
            APFEFQFSYSETPKVKP+AIREPAFLPF PPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP
Sbjct: 101  APFEFQFSYSETPKVKPIAIREPAFLPFEPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP 160

Query: 884  VGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDG 705
             GMKGVK+VEMPGPFP+G+FP+EG++REEILGE L + EV+MLVKP ++ NRQVNLGRDG
Sbjct: 161  EGMKGVKKVEMPGPFPVGKFPEEGVSREEILGEPLKKWEVQMLVKPMMADNRQVNLGRDG 220

Query: 704  LTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGR 525
            LTHNMLELIH HWKR+R+CK+RC+GVPTVDMDNVC H+EEK GGKIIHR GGV+YLFRGR
Sbjct: 221  LTHNMLELIHSHWKRRRVCKIRCKGVPTVDMDNVCRHIEEKAGGKIIHRAGGVVYLFRGR 280

Query: 524  NYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIY 345
            NYNYRTRPQYPVMLWKPA PVYPKLIQ+APEGLTK EA  +  KGK+LLPICKLAKNG+Y
Sbjct: 281  NYNYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTKAEADELRMKGKSLLPICKLAKNGVY 340

Query: 344  MTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEW 165
             TLVKDVRDAFEGS LVKIDC+G+  SDYKK+GAKLK+LVPCVLLSFDDEQ+L WRGK W
Sbjct: 341  TTLVKDVRDAFEGSHLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQVLIWRGKGW 400

Query: 164  KSMYPEA---PPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            KSMYP+A   PP+ +      +    N GE+     + + E+   SPK LS W+ AI
Sbjct: 401  KSMYPQAPVFPPAEATITRDLE----NKGEVDDNQSKHISEMVSISPKMLSLWRSAI 453


>ref|XP_012479367.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Gossypium
            raimondii] gi|823159075|ref|XP_012479368.1| PREDICTED:
            CRS2-associated factor 2, chloroplastic [Gossypium
            raimondii] gi|823159077|ref|XP_012479369.1| PREDICTED:
            CRS2-associated factor 2, chloroplastic [Gossypium
            raimondii] gi|763763952|gb|KJB31206.1| hypothetical
            protein B456_005G181000 [Gossypium raimondii]
          Length = 563

 Score =  619 bits (1595), Expect = e-174
 Identities = 296/414 (71%), Positives = 342/414 (82%), Gaps = 7/414 (1%)
 Frame = -1

Query: 1223 RPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAPFEFQF 1044
            R P  +   ++PA    HRR+ Y KPV  GVIS++GDR VI+GE+GVSY LPGAPFEFQ+
Sbjct: 47   RNPKTNVPRSNPALSIPHRRSNYRKPVQKGVISTDGDRCVIVGENGVSYKLPGAPFEFQY 106

Query: 1043 SYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVGMKGVK 864
            SYSETP  +P+AIREPA+LPF PPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP G KGVK
Sbjct: 107  SYSETPSAEPIAIREPAYLPFAPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPPGKKGVK 166

Query: 863  QVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLTHNMLE 684
             VE PGPFP G++PKEG TREEILGE L + E++MLVKP LS+NRQVNLGRDGLTHNML+
Sbjct: 167  HVEKPGPFPFGKYPKEGKTREEILGEPLKKWEIKMLVKPLLSYNRQVNLGRDGLTHNMLD 226

Query: 683  LIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNYNYRTR 504
            LIH HWKR+R+CK++C+GVPTVDMDNVC H+EEKTGGKIIHRVGGV+YLFRGRNYNYRTR
Sbjct: 227  LIHSHWKRRRVCKIKCKGVPTVDMDNVCRHIEEKTGGKIIHRVGGVVYLFRGRNYNYRTR 286

Query: 503  PQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMTLVKDV 324
            PQYPVMLWKPATPVYPKLIQEAPEGLTK EA    KKGK+LLPIC LAKNG+Y +LVKDV
Sbjct: 287  PQYPVMLWKPATPVYPKLIQEAPEGLTKAEADEFRKKGKSLLPICTLAKNGVYASLVKDV 346

Query: 323  RDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKSMYPE- 147
            RDAFE  PLVKIDC+G+  SDYKKIGAKLKELVPCVLLSFDDEQIL WRG++WKSMY + 
Sbjct: 347  RDAFEECPLVKIDCKGLQPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSMYGDT 406

Query: 146  ----APPSVSVSNHSNDSASLNSGELYSANERLVPELE--ISSPKFLSRWKRAI 3
                 P    +S+  ++SA        S+++   P+ +  +SSPK +S W+RAI
Sbjct: 407  SSTLVPVKADISSGIDNSAK-------SSDDSGTPDAQRVVSSPKMISLWRRAI 453


>ref|XP_010270955.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Nelumbo nucifera]
          Length = 562

 Score =  618 bits (1593), Expect = e-174
 Identities = 303/413 (73%), Positives = 345/413 (83%), Gaps = 4/413 (0%)
 Frame = -1

Query: 1229 TKRPPNEST----TTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGA 1062
            T++P ++S      +++PAFK+ HRRTKY+KPVSDGVI+S+GDR+V++GESGVSYLLPGA
Sbjct: 50   TQKPLSQSEQPSHNSSNPAFKSVHRRTKYHKPVSDGVIASDGDRAVVVGESGVSYLLPGA 109

Query: 1061 PFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPV 882
            PFEFQFSYSETPKVKPLAIREPAFLPF P TMPRPWTGKAPLK+ KK IPLFDSFNPPP 
Sbjct: 110  PFEFQFSYSETPKVKPLAIREPAFLPFAPQTMPRPWTGKAPLKEKKKKIPLFDSFNPPPP 169

Query: 881  GMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGL 702
              KGVK +EMP PF LG FPKEG TREEILG+ LT+ EVR LVKP LSHNRQVNLGRDGL
Sbjct: 170  ETKGVKHLEMPRPFVLGEFPKEGKTREEILGKPLTKAEVRALVKPLLSHNRQVNLGRDGL 229

Query: 701  THNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRN 522
            THNMLELIH HW+RQ +CKVRCRGVPTVDM NVC+HLEEK GGKIIH+VGGV+YLFRGRN
Sbjct: 230  THNMLELIHSHWRRQPVCKVRCRGVPTVDMRNVCHHLEEKAGGKIIHQVGGVIYLFRGRN 289

Query: 521  YNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYM 342
            Y+++TRP+YP+MLWKPATPVYPKLIQEAPEGLTK EA ++  KGK+LLPICKLAKNG+Y+
Sbjct: 290  YDHQTRPRYPIMLWKPATPVYPKLIQEAPEGLTKLEADDLRAKGKSLLPICKLAKNGVYI 349

Query: 341  TLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWK 162
             LVKDVR+AFE S LVKIDC GMHASDYKKIGAKLKELVPCVLLSFDDEQIL WRG+ WK
Sbjct: 350  NLVKDVRNAFEESTLVKIDCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGRYWK 409

Query: 161  SMYPEAPPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            SM      S   S  S  S+ L+          +  + EISS + +S WK+AI
Sbjct: 410  SM------SADHSTGSGISSGLDCTGKVEDARPVDRKTEISSHRMMSLWKQAI 456


>ref|XP_006438328.1| hypothetical protein CICLE_v10031138mg [Citrus clementina]
            gi|557540524|gb|ESR51568.1| hypothetical protein
            CICLE_v10031138mg [Citrus clementina]
          Length = 552

 Score =  618 bits (1593), Expect = e-174
 Identities = 304/412 (73%), Positives = 343/412 (83%), Gaps = 2/412 (0%)
 Frame = -1

Query: 1232 ITKRPPNESTTTT--SPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAP 1059
            + K PP E    +  +PAFK  HR T+YYKPV+ GVISS+GDR V IGESGVSY LPGAP
Sbjct: 38   VPKYPPKERKPKSRPNPAFKLPHRHTRYYKPVNPGVISSDGDRGVTIGESGVSYRLPGAP 97

Query: 1058 FEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVG 879
            FEFQ+SY+ETP+ KPLAIREPAFLPF PPTMPRPWTGK PLKKSKK IPLFDSFNPP  G
Sbjct: 98   FEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLKKSKKKIPLFDSFNPPLPG 157

Query: 878  MKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLT 699
             KGVK VEMPGPFPLG++P+EG TREEILGE L R E+ MLVKP L  NRQVNLGRDGLT
Sbjct: 158  KKGVKHVEMPGPFPLGKYPQEGKTREEILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLT 217

Query: 698  HNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNY 519
            HNMLELIH HWKR+R+ K++C+GVPTVDMDNVC  LEEKTGGKII RVGG++YLFRGRNY
Sbjct: 218  HNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRGRNY 277

Query: 518  NYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMT 339
            NYRTRPQYP+MLWKPA PVYPKLIQEAPEGLTK EA  + +KGK+LLPICKLAKNG+Y+T
Sbjct: 278  NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLT 337

Query: 338  LVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKS 159
            LV+DVR+AFEGS LVK++C+GMHASDYKK+GAKLKELVPCVLLSFDDEQIL WRGK+WKS
Sbjct: 338  LVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 397

Query: 158  MYPEAPPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            MYPE PPS S +    D A    G    +++     +  SSPK +S WKRAI
Sbjct: 398  MYPE-PPSFS-NPVDLDIAGDADGSGTPSDDPSQGTIR-SSPKMISLWKRAI 446


>ref|XP_006483899.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Citrus
            sinensis]
          Length = 552

 Score =  617 bits (1591), Expect = e-174
 Identities = 303/412 (73%), Positives = 343/412 (83%), Gaps = 2/412 (0%)
 Frame = -1

Query: 1232 ITKRPPNESTTTT--SPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAP 1059
            + K PP E    +  +PAFK  HR T+YYKPV+ GVI+S+GDR V IGESGVSY LPGAP
Sbjct: 38   VPKYPPKEQKPKSRPNPAFKLPHRHTRYYKPVNPGVIASDGDRGVTIGESGVSYRLPGAP 97

Query: 1058 FEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVG 879
            FEFQ+SY+ETP+ KPLAIREPAFLPF PPTMPRPWTGK PLKKSKK IPLFDSFNPP  G
Sbjct: 98   FEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLKKSKKKIPLFDSFNPPLPG 157

Query: 878  MKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLT 699
             KGVK VEMPGPFPLG++P+EG TREEILGE L R E+ MLVKP L  NRQVNLGRDGLT
Sbjct: 158  KKGVKHVEMPGPFPLGKYPQEGKTREEILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLT 217

Query: 698  HNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNY 519
            HNMLELIH HWKR+R+ K++C+GVPTVDMDNVC  LEEKTGGKII RVGG++YLFRGRNY
Sbjct: 218  HNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRGRNY 277

Query: 518  NYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMT 339
            NYRTRPQYP+MLWKPA PVYPKLIQEAPEGLTK EA  + +KGK+LLPICKLAKNG+Y+T
Sbjct: 278  NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLT 337

Query: 338  LVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKS 159
            LV+DVR+AFEGS LVK++C+GMHASDYKK+GAKLKELVPCVLLSFDDEQIL WRGK+WKS
Sbjct: 338  LVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 397

Query: 158  MYPEAPPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            MYPE PPS S +    D A    G    +++     +  SSPK +S WKRAI
Sbjct: 398  MYPE-PPSFS-NPVDLDIAGDADGSGTPSDDPSQGTIR-SSPKMISLWKRAI 446


>gb|KJB31209.1| hypothetical protein B456_005G181000 [Gossypium raimondii]
          Length = 558

 Score =  617 bits (1590), Expect = e-174
 Identities = 295/407 (72%), Positives = 341/407 (83%)
 Frame = -1

Query: 1223 RPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAPFEFQF 1044
            R P  +   ++PA    HRR+ Y KPV  GVIS++GDR VI+GE+GVSY LPGAPFEFQ+
Sbjct: 47   RNPKTNVPRSNPALSIPHRRSNYRKPVQKGVISTDGDRCVIVGENGVSYKLPGAPFEFQY 106

Query: 1043 SYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVGMKGVK 864
            SYSETP  +P+AIREPA+LPF PPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP G KGVK
Sbjct: 107  SYSETPSAEPIAIREPAYLPFAPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPPGKKGVK 166

Query: 863  QVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLTHNMLE 684
             VE PGPFP G++PKEG TREEILGE L + E++MLVKP LS+NRQVNLGRDGLTHNML+
Sbjct: 167  HVEKPGPFPFGKYPKEGKTREEILGEPLKKWEIKMLVKPLLSYNRQVNLGRDGLTHNMLD 226

Query: 683  LIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNYNYRTR 504
            LIH HWKR+R+CK++C+GVPTVDMDNVC H+EEKTGGKIIHRVGGV+YLFRGRNYNYRTR
Sbjct: 227  LIHSHWKRRRVCKIKCKGVPTVDMDNVCRHIEEKTGGKIIHRVGGVVYLFRGRNYNYRTR 286

Query: 503  PQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMTLVKDV 324
            PQYPVMLWKPATPVYPKLIQEAPEGLTK EA    KKGK+LLPIC LAKNG+Y +LVKDV
Sbjct: 287  PQYPVMLWKPATPVYPKLIQEAPEGLTKAEADEFRKKGKSLLPICTLAKNGVYASLVKDV 346

Query: 323  RDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKSMYPEA 144
            RDAFE  PLVKIDC+G+  SDYKKIGAKLKELVPCVLLSFDDEQIL WRG++WKSMY + 
Sbjct: 347  RDAFEECPLVKIDCKGLQPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSMYGDT 406

Query: 143  PPSVSVSNHSNDSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
              S  V   ++ S++ +S +  + + + V    +SSPK +S W+RAI
Sbjct: 407  -SSTLVPVKADISSAKSSDDSGTPDAQRV----VSSPKMISLWRRAI 448


>gb|KHG22318.1| hypothetical protein F383_04491 [Gossypium arboreum]
          Length = 563

 Score =  614 bits (1584), Expect = e-173
 Identities = 295/409 (72%), Positives = 339/409 (82%), Gaps = 2/409 (0%)
 Frame = -1

Query: 1223 RPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAPFEFQF 1044
            R P  +   ++PA    HRR+ Y KPV  GVIS++GDR VI+GE+GVSY LPGAPFEFQ+
Sbjct: 47   RNPKTNVPRSNPALSIPHRRSNYRKPVQKGVISTDGDRCVIVGENGVSYKLPGAPFEFQY 106

Query: 1043 SYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVGMKGVK 864
            SYSETP  +P+AIREPA+LPF PPTMPRPWTGKAPLKKSKKNIPLFDSFNPPP G KGVK
Sbjct: 107  SYSETPNAEPIAIREPAYLPFAPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPPGKKGVK 166

Query: 863  QVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLTHNMLE 684
             VE PGPFP G++PKEG TREEILGE L + E++MLVKP LS NRQVNLGRDGLTHNML+
Sbjct: 167  HVEKPGPFPFGKYPKEGKTREEILGEPLKKWEIKMLVKPLLSDNRQVNLGRDGLTHNMLD 226

Query: 683  LIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNYNYRTR 504
            LIH HWKR+R+CK++C+GVPTVDMDNVC H+EEKTGGKIIHRVGGV+YLFRGRNYNYRTR
Sbjct: 227  LIHTHWKRRRVCKIKCKGVPTVDMDNVCRHIEEKTGGKIIHRVGGVVYLFRGRNYNYRTR 286

Query: 503  PQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMTLVKDV 324
            PQYPVMLWKPATPVYPKLIQEAPEGLTK EA    KKGK+LLPIC LAKNG+Y +LVKDV
Sbjct: 287  PQYPVMLWKPATPVYPKLIQEAPEGLTKAEADEFRKKGKSLLPICTLAKNGMYASLVKDV 346

Query: 323  RDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKSMYPEA 144
            RDAFE  PLVKIDC+G+  SDYKKIGAKLKELVPCVLLSFDDEQIL WRG++WKSMY + 
Sbjct: 347  RDAFEECPLVKIDCKGLQPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSMYRDT 406

Query: 143  PPSVSVSNHSNDSASLNSGELYSANERLVPELE--ISSPKFLSRWKRAI 3
              ++        S   NS +  S+++   P+ +  +SSPK +S W+RAI
Sbjct: 407  SSNLVPVKADILSGIDNSAK--SSDDSGTPDSQRVVSSPKMMSLWRRAI 453


>ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
            gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName:
            Full=CRS2-associated factor 2, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 2; Flags: Precursor
            gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4
            [Arabidopsis thaliana]
            gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27
            [Arabidopsis thaliana] gi|17065312|gb|AAL32810.1| Unknown
            protein [Arabidopsis thaliana] gi|21387129|gb|AAM47968.1|
            unknown protein [Arabidopsis thaliana]
            gi|332192262|gb|AEE30383.1| CRS2-associated factor 2
            [Arabidopsis thaliana]
          Length = 564

 Score =  614 bits (1584), Expect = e-173
 Identities = 298/419 (71%), Positives = 341/419 (81%), Gaps = 4/419 (0%)
 Frame = -1

Query: 1247 KSQKSITKRPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLP 1068
            ++QK+  +   N     ++PA K  H RT+YYKPV +GVISS+GDR+++IG+SGVSY LP
Sbjct: 48   RNQKTNHQTDTNPKKPQSNPALKLPHHRTRYYKPVKEGVISSDGDRTILIGDSGVSYQLP 107

Query: 1067 GAPFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPP 888
            GAPFEFQFSYSETPKVKP+ IREPAF+PF PPTMPRPWTGKAPLKKSKK IPLFDSFNPP
Sbjct: 108  GAPFEFQFSYSETPKVKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPP 167

Query: 887  PVGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRD 708
            P G  GVK VEMPGP P GR+PKEGM REE+LGE L R E  ML+KPH+  NRQVNLGRD
Sbjct: 168  PAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQVNLGRD 227

Query: 707  GLTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRG 528
            G THNMLELIH HWKR+R+CKVRC+GVPTVDM+NVC  LEEKTGG+IIHRVGGV+YLFRG
Sbjct: 228  GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRG 287

Query: 527  RNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGI 348
            RNYNYRTRPQYP+MLWKPA PVYPKLIQE PEGLTK EA     KGK+L PICKL+KNG+
Sbjct: 288  RNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGV 347

Query: 347  YMTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKE 168
            Y++LVKDVRDAFE S LVK+DC G+  SDYKKIGAKLKELVPCVLLSFDDEQIL WRG+E
Sbjct: 348  YVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRE 407

Query: 167  WKSMYPEAP--PSVSVSNHSN--DSASLNSGELYSANERLVPELEISSPKFLSRWKRAI 3
            WKS + + P  PS+S +N +N  D +   S E   AN    P   ISSPK +S W+RA+
Sbjct: 408  WKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVAN----PSTTISSPKMISLWQRAL 462


>ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
            lyrata] gi|297339127|gb|EFH69544.1| hypothetical protein
            ARALYDRAFT_335585 [Arabidopsis lyrata subsp. lyrata]
          Length = 565

 Score =  613 bits (1581), Expect = e-172
 Identities = 297/412 (72%), Positives = 339/412 (82%), Gaps = 3/412 (0%)
 Frame = -1

Query: 1229 TKRPPNESTTTTSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSYLLPGAPFEF 1050
            TK+P +      +PA K  H RT+YYKPV +GVISS+GDR+++IGESGVSY LPGAPFEF
Sbjct: 62   TKKPQS------NPALKLPHHRTRYYKPVKEGVISSDGDRTIVIGESGVSYQLPGAPFEF 115

Query: 1049 QFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPVGMKG 870
            QFSYSETPK KP+ IREPAF+PF PPTMPRPWTGKAPLKKSKK IPLFDSFNPPP G  G
Sbjct: 116  QFSYSETPKAKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPAGKSG 175

Query: 869  VKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNLGRDGLTHNM 690
            VK VEMPGP P GR+PKEGM REEILGE L + E  ML+KPH+  NRQVNLGRDG THNM
Sbjct: 176  VKYVEMPGPLPFGRYPKEGMNREEILGEPLKKWEKGMLIKPHMHDNRQVNLGRDGFTHNM 235

Query: 689  LELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYLFRGRNYNYR 510
            LELIH HWKR+R+CKVRC+GVPTVDMDNVC  LEEKTGG+IIHRVGGV+YLFRGRNYNYR
Sbjct: 236  LELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYR 295

Query: 509  TRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAKNGIYMTLVK 330
            TRPQYP+MLWKPA PVYPKLIQE PEGLTK EA     KGK+L PICKL+KNG+Y++LVK
Sbjct: 296  TRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEALEFRVKGKSLRPICKLSKNGVYVSLVK 355

Query: 329  DVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGKEWKSMYP 150
            DVRDAFE SPLVK+DC G+  SDYKKIGAKLKELVPCVLLSFDDEQIL WRG++WKS + 
Sbjct: 356  DVRDAFELSPLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSRFV 415

Query: 149  EAP--PSVSVSNHSNDSASLNSGELYSANERLV-PELEISSPKFLSRWKRAI 3
            + P  PS+S +N +N+   L+  +  S  + +  P   ISSPK +S WKRA+
Sbjct: 416  DNPLIPSLSETNIANE---LDPSDKPSDEQTVSDPSSTISSPKMISLWKRAL 464


>ref|XP_006416086.1| hypothetical protein EUTSA_v10007246mg [Eutrema salsugineum]
            gi|557093857|gb|ESQ34439.1| hypothetical protein
            EUTSA_v10007246mg [Eutrema salsugineum]
          Length = 563

 Score =  612 bits (1579), Expect = e-172
 Identities = 297/421 (70%), Positives = 345/421 (81%), Gaps = 7/421 (1%)
 Frame = -1

Query: 1244 SQKSITKRPPNESTTT----TSPAFKTFHRRTKYYKPVSDGVISSEGDRSVIIGESGVSY 1077
            S+++   R  N + T     ++PA K  HRRT+YYKPV +GVISS+G+R+++IG+SGVSY
Sbjct: 44   SRRNRNPRSSNHTDTNPKPQSNPALKLPHRRTRYYKPVKEGVISSDGERTIVIGDSGVSY 103

Query: 1076 LLPGAPFEFQFSYSETPKVKPLAIREPAFLPFTPPTMPRPWTGKAPLKKSKKNIPLFDSF 897
             LPGAPFEFQFSYSETPK KP+ IREPAFLPF PPTMPRPWTGKAPLKKSKK IPLFDSF
Sbjct: 104  QLPGAPFEFQFSYSETPKAKPVGIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSF 163

Query: 896  NPPPVGMKGVKQVEMPGPFPLGRFPKEGMTREEILGERLTREEVRMLVKPHLSHNRQVNL 717
            NPPP G  GVK VEMPGP+P GR+PKE MTR+EILGE L + E  ML+KPH+  NRQVNL
Sbjct: 164  NPPPAGKSGVKYVEMPGPYPFGRYPKEAMTRDEILGEPLKKWEKGMLIKPHMHDNRQVNL 223

Query: 716  GRDGLTHNMLELIHEHWKRQRICKVRCRGVPTVDMDNVCYHLEEKTGGKIIHRVGGVLYL 537
            GRDG THNMLELIH HWKR+R+CKVRC+GVPTVDMDNVC  LEEKTGG+IIHRVGGV+YL
Sbjct: 224  GRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYL 283

Query: 536  FRGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKFEAANMIKKGKNLLPICKLAK 357
            FRGRNYNYRTRPQYP+MLWKPA PVYPKLIQE PEGLTK EA     KGK+L PICKL+K
Sbjct: 284  FRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEIPEGLTKDEAHEFRVKGKSLKPICKLSK 343

Query: 356  NGIYMTLVKDVRDAFEGSPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWR 177
            NG+Y++LVKDVRDAFE SPLVK+DC G+  SDYKKIGAKLKELVPCVLLSFDDEQIL WR
Sbjct: 344  NGVYVSLVKDVRDAFELSPLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWR 403

Query: 176  GKEWKSMYPEAP--PSVSVSNHSND-SASLNSGELYSANERLVPELEISSPKFLSRWKRA 6
            G++WKS + + P  P +S +N  ++   S  +GE  +A++   P   ISSPK +S WKRA
Sbjct: 404  GRDWKSRFLDNPLTPLLSETNIEDELDPSDKTGEEQTASD---PNTVISSPKMISLWKRA 460

Query: 5    I 3
            +
Sbjct: 461  L 461