BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00001961
         (2584 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su...   726   0.0  
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su...   726   0.0  
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   707   0.0  
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   706   0.0  
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   706   0.0  
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   675   0.0  
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   667   0.0  
ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV su...   662   0.0  
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su...   662   0.0  
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   659   0.0  
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   659   0.0  
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su...   658   0.0  
ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV su...   657   0.0  
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su...   657   0.0  
gb|KDP25521.1| hypothetical protein JCGZ_20677 [Jatropha curcas]      657   0.0  
ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV su...   655   0.0  
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   652   0.0  
ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV su...   651   0.0  
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV su...   651   0.0  
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   651   0.0  

>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nelumbo nucifera]
          Length = 1373

 Score =  726 bits (1875), Expect = 0.0
 Identities = 414/888 (46%), Positives = 568/888 (63%), Gaps = 47/888 (5%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V ++   L    ++QL+ML  H  + P I+KAP  +  +WTGKQL  ML+PQ F++ FP 
Sbjct: 395  VTQNGVFLDMFQMQQLKMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPS 454

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            +GV             S+WL+    SI+S LV +Y ++ +D LF+AQ++  EWISM GFS
Sbjct: 455  SGVKISNGELLCSFGESSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFS 514

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSDIY++S+S SR NM++EV  GL E  +    K  +++   +  L  D E+T     
Sbjct: 515  VSLSDIYIASDSHSRKNMLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLRYDGENTKT-NG 573

Query: 1984 FEVDD---IDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            + VD     +     L ++++ ++++ F D+Q L++ YAS +NS+LAM+++GSKG+LLK+
Sbjct: 574  YRVDQECPSNQESVVLCQVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKI 633

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRNH-RDVDTPG---SHILYAVIENSFLSGLDP 1646
            V Q LCLGLQH+S PLSF++P  LSC++ N+ +  D P    S+I YAV+ENSFL GL+P
Sbjct: 634  VQQGLCLGLQHASVPLSFQIPCKLSCASWNYQKSHDIPACSISNIPYAVVENSFLDGLNP 693

Query: 1645 LECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVS 1466
            LEC+VHSVS RD+SFGENA++PGTL RK+MFYMRDLY+AYDGTVR AYGNQLVQFSYG  
Sbjct: 694  LECFVHSVSTRDNSFGENADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCF 753

Query: 1465 DKVTSTEDEISCQISTGSDRR---CGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXX 1295
             K  S +D   C +  GS       GG+PVGSL+ACSISEAAYSALD+P           
Sbjct: 754  -KGDSVQDP--CGLFGGSPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLN 810

Query: 1294 XXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVF 1115
                        +  Q  +LFLSKKL R   G EYGA EVK+HLE+V FS+V+S   ++F
Sbjct: 811  LKKVLECGQKNASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIF 870

Query: 1114 S-EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSK------------ 974
            S + + Q   SPW+CHFH+ KE M+++GLN+ SI  AL++N     +K            
Sbjct: 871  SPQRHSQMSASPWVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRK 930

Query: 973  --------QKFELPVMHLDSRSHCSMAGPE---TSCIVGTVDIEEGCSNPLAGVRDVMMP 827
                     K +LP + + SR    +   E   T CIV  V+I +  S  L  VRD+++P
Sbjct: 931  KYKLSGKQVKIKLPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVP 990

Query: 826  FLLGTVIKGFVEVEKVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNAC 653
            FL  TVIKGF+E + VDI+WNDLP+ S++   SSGEL L+V M+   +  KFWS ++NAC
Sbjct: 991  FLSRTVIKGFLEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNAC 1050

Query: 652  LPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRL 473
            LP+MDLIDWERSYP++I ++  AYGI+A W +F RSLK   SDIGK++L EHLLL+A+ L
Sbjct: 1051 LPVMDLIDWERSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSL 1110

Query: 472  SFTGEFLGLTAKGL---ITQTSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAW 302
            SFTGEFLGL+AKG+   + Q S  SPF QACFS P   F++AAK+ A DDL G LD+V+W
Sbjct: 1111 SFTGEFLGLSAKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSW 1170

Query: 301  GKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLSTQ-PSYKDARKASPTKG-----DKWG 143
            GKKVPIGTGG+F+I+YS K +   K  +I++ L  +  S+ +  +   T        KW 
Sbjct: 1171 GKKVPIGTGGHFDILYSGKGFTPAKPTNIYSALCHESKSHGENVETGLTDACRKVCCKWE 1230

Query: 142  KYSF-ADGFAIPATPVKSESIPKEVGNASPSENDILDMVFTLQNILYK 2
            K SF A    +P     SE++P  V  +  S  D+L +  +L++IL+K
Sbjct: 1231 KQSFYASKDPLPKGD-SSENLPSSVLRSIYSREDVLKLNSSLKHILHK 1277


>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nelumbo nucifera]
          Length = 1489

 Score =  726 bits (1875), Expect = 0.0
 Identities = 414/888 (46%), Positives = 568/888 (63%), Gaps = 47/888 (5%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V ++   L    ++QL+ML  H  + P I+KAP  +  +WTGKQL  ML+PQ F++ FP 
Sbjct: 517  VTQNGVFLDMFQMQQLKMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPS 576

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            +GV             S+WL+    SI+S LV +Y ++ +D LF+AQ++  EWISM GFS
Sbjct: 577  SGVKISNGELLCSFGESSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFS 636

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSDIY++S+S SR NM++EV  GL E  +    K  +++   +  L  D E+T     
Sbjct: 637  VSLSDIYIASDSHSRKNMLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLRYDGENTKT-NG 695

Query: 1984 FEVDD---IDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            + VD     +     L ++++ ++++ F D+Q L++ YAS +NS+LAM+++GSKG+LLK+
Sbjct: 696  YRVDQECPSNQESVVLCQVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKI 755

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRNH-RDVDTPG---SHILYAVIENSFLSGLDP 1646
            V Q LCLGLQH+S PLSF++P  LSC++ N+ +  D P    S+I YAV+ENSFL GL+P
Sbjct: 756  VQQGLCLGLQHASVPLSFQIPCKLSCASWNYQKSHDIPACSISNIPYAVVENSFLDGLNP 815

Query: 1645 LECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVS 1466
            LEC+VHSVS RD+SFGENA++PGTL RK+MFYMRDLY+AYDGTVR AYGNQLVQFSYG  
Sbjct: 816  LECFVHSVSTRDNSFGENADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCF 875

Query: 1465 DKVTSTEDEISCQISTGSDRR---CGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXX 1295
             K  S +D   C +  GS       GG+PVGSL+ACSISEAAYSALD+P           
Sbjct: 876  -KGDSVQDP--CGLFGGSPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLN 932

Query: 1294 XXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVF 1115
                        +  Q  +LFLSKKL R   G EYGA EVK+HLE+V FS+V+S   ++F
Sbjct: 933  LKKVLECGQKNASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIF 992

Query: 1114 S-EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSK------------ 974
            S + + Q   SPW+CHFH+ KE M+++GLN+ SI  AL++N     +K            
Sbjct: 993  SPQRHSQMSASPWVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRK 1052

Query: 973  --------QKFELPVMHLDSRSHCSMAGPE---TSCIVGTVDIEEGCSNPLAGVRDVMMP 827
                     K +LP + + SR    +   E   T CIV  V+I +  S  L  VRD+++P
Sbjct: 1053 KYKLSGKQVKIKLPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVP 1112

Query: 826  FLLGTVIKGFVEVEKVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNAC 653
            FL  TVIKGF+E + VDI+WNDLP+ S++   SSGEL L+V M+   +  KFWS ++NAC
Sbjct: 1113 FLSRTVIKGFLEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNAC 1172

Query: 652  LPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRL 473
            LP+MDLIDWERSYP++I ++  AYGI+A W +F RSLK   SDIGK++L EHLLL+A+ L
Sbjct: 1173 LPVMDLIDWERSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSL 1232

Query: 472  SFTGEFLGLTAKGL---ITQTSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAW 302
            SFTGEFLGL+AKG+   + Q S  SPF QACFS P   F++AAK+ A DDL G LD+V+W
Sbjct: 1233 SFTGEFLGLSAKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSW 1292

Query: 301  GKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLSTQ-PSYKDARKASPTKG-----DKWG 143
            GKKVPIGTGG+F+I+YS K +   K  +I++ L  +  S+ +  +   T        KW 
Sbjct: 1293 GKKVPIGTGGHFDILYSGKGFTPAKPTNIYSALCHESKSHGENVETGLTDACRKVCCKWE 1352

Query: 142  KYSF-ADGFAIPATPVKSESIPKEVGNASPSENDILDMVFTLQNILYK 2
            K SF A    +P     SE++P  V  +  S  D+L +  +L++IL+K
Sbjct: 1353 KQSFYASKDPLPKGD-SSENLPSSVLRSIYSREDVLKLNSSLKHILHK 1399


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  707 bits (1824), Expect = 0.0
 Identities = 403/877 (45%), Positives = 554/877 (63%), Gaps = 36/877 (4%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V ED   L+   ++QLEM   +  +SPAI+KAP     +WTGKQL SML+P  FN+ FP+
Sbjct: 502  VMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPL 561

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGV             SAWL+D D +++S+LV++   K LD L++AQE+L EW+SMRG S
Sbjct: 562  NGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLS 621

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSDIYLSS+S SR NM++EV  GLL A Q    K  L++ +  +N L  S +  N + 
Sbjct: 622  VSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQN 677

Query: 1984 FEVDDIDNRLYD------LTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSL 1823
              V D+ +  Y+      L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+L
Sbjct: 678  GVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNL 737

Query: 1822 LKLVHQSLCLGLQHSSAPLSFRVPSMLSCSTRNHRDVDTPG-----------SHILYAVI 1676
            LKLV Q LCLGLQHS  PLSF++P  LSC+  N + V  PG           S+I YAV+
Sbjct: 738  LKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKV--PGLIQNDTSEYAESYIPYAVV 795

Query: 1675 ENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGN 1496
            ENSFL GL+PLEC+VHSV++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGN
Sbjct: 796  ENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGN 855

Query: 1495 QLVQFSYGVSDKVTSTE--DEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXX 1322
            QLVQFSY +    T ++  +E +C          GG+PVGS++AC+ISEAAYSALD+P  
Sbjct: 856  QLVQFSYNIEHTSTPSDGINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPIS 909

Query: 1321 XXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSE 1142
                               K+   + V+LFLSKKL++  +G EYGA+EVK+HLEK+LFS+
Sbjct: 910  LLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSD 969

Query: 1141 VISDTAIVFSEEN-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKF 965
            ++S   IVFS +N  +TH SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K 
Sbjct: 970  IVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKI 1029

Query: 964  ELPVMHLDSRS-HCSMAGPETSCIVGTVDI---EEGCSNPLAGVRDVMMPFLLGTVIKGF 797
             LP + + S+     M   ++ C   TV I   ++ C   L  VRD+++PFLLG V+KG 
Sbjct: 1030 NLPDLQITSKDCFVDMEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVKGL 1088

Query: 796  VEVEKVDIVWNDLPRGS-RTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWER 620
            ++V+KVDI+WND P      SSSG L LRV ++       FW ++ +ACL IMD+IDWER
Sbjct: 1089 LDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWER 1148

Query: 619  SYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTA 440
            S+P++I+D+   YGI+A W +F  SLKS  SDIGK++L EHLLL+A  LS TGEF+GL A
Sbjct: 1149 SHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNA 1208

Query: 439  KGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGN 269
            KG+  Q   TS  SPF Q CFS P   F++A K    D+L G+LDA+AWGK   +G+GG+
Sbjct: 1209 KGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGH 1268

Query: 268  FEIIYSQKDYQVDK-LDIFNTLSTQPSYKDAR-------KASPTKGDKWGKYSFADGFAI 113
            F+I+YS K +++ +  DI+  L +Q S  +             T      +  +A+G + 
Sbjct: 1269 FDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSA 1328

Query: 112  PATPVKSESIPKEVGNASPSENDILDMVFTLQNILYK 2
                   E I K V  +  S NDI  +   L+ IL K
Sbjct: 1329 SKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQK 1365


>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
            vinifera]
          Length = 1354

 Score =  706 bits (1821), Expect = 0.0
 Identities = 403/879 (45%), Positives = 553/879 (62%), Gaps = 38/879 (4%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V ED   L+   ++QLEM   +  +SPAI+KAP     +WTGKQL SML+P  FN+ FP+
Sbjct: 396  VMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPL 455

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGV             SAWL+D D +++S+LV++   K LD L++AQE+L EW+SMRG S
Sbjct: 456  NGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLS 515

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSDIYLSS+S SR NM++EV  GLL A Q    K  L++ +  +N L  S +  N + 
Sbjct: 516  VSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQN 571

Query: 1984 FEVDDIDNRLYD------LTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSL 1823
              V D+ +  Y+      L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+L
Sbjct: 572  GVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNL 631

Query: 1822 LKLVHQSLCLGLQHSSAPLSFRVPSMLSCSTRNHRDVDTPG-----------SHILYAVI 1676
            LKLV Q LCLGLQHS  PLSF++P  LSC+  N + V  PG           S+I YAV+
Sbjct: 632  LKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKV--PGLIQNDTSEYAESYIPYAVV 689

Query: 1675 ENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGN 1496
            ENSFL GL+PLEC+VHSV++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGN
Sbjct: 690  ENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGN 749

Query: 1495 QLVQFSYGVSDKVTSTE--DEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXX 1322
            QLVQFSY +    T ++  +E +C          GG+PVGS++AC+ISEAAYSALD+P  
Sbjct: 750  QLVQFSYNIEHTSTPSDGINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPIS 803

Query: 1321 XXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSE 1142
                               K+   + V+LFLSKKL++  +G EYGA+EVK+HLEK+LFS+
Sbjct: 804  LLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSD 863

Query: 1141 VISDTAIVFSEEN-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKF 965
            ++S   IVFS +N  +TH SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K 
Sbjct: 864  IVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKI 923

Query: 964  ELPVMHLDSRSH---CSMAGPETSCIVGTVDI---EEGCSNPLAGVRDVMMPFLLGTVIK 803
             LP + + S        M   ++ C   TV I   ++ C   L  VRD+++PFLLG V+K
Sbjct: 924  NLPDLQITSNGRDCFVDMEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVK 982

Query: 802  GFVEVEKVDIVWNDLPRGS-RTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDW 626
            G ++V+KVDI+WND P      SSSG L LRV ++       FW ++ +ACL IMD+IDW
Sbjct: 983  GLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDW 1042

Query: 625  ERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGL 446
            ERS+P++I+D+   YGI+A W +F  SLKS  SDIGK++L EHLLL+A  LS TGEF+GL
Sbjct: 1043 ERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGL 1102

Query: 445  TAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTG 275
             AKG+  Q   TS  SPF Q CFS P   F++A K    D+L G+LDA+AWGK   +G+G
Sbjct: 1103 NAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSG 1162

Query: 274  GNFEIIYSQKDYQVDK-LDIFNTLSTQPSYKDAR-------KASPTKGDKWGKYSFADGF 119
            G+F+I+YS K +++ +  DI+  L +Q S  +             T      +  +A+G 
Sbjct: 1163 GHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGD 1222

Query: 118  AIPATPVKSESIPKEVGNASPSENDILDMVFTLQNILYK 2
            +        E I K V  +  S NDI  +   L+ IL K
Sbjct: 1223 SASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQK 1261


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
            vinifera]
          Length = 1460

 Score =  706 bits (1821), Expect = 0.0
 Identities = 403/879 (45%), Positives = 553/879 (62%), Gaps = 38/879 (4%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V ED   L+   ++QLEM   +  +SPAI+KAP     +WTGKQL SML+P  FN+ FP+
Sbjct: 502  VMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPL 561

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGV             SAWL+D D +++S+LV++   K LD L++AQE+L EW+SMRG S
Sbjct: 562  NGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLS 621

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSDIYLSS+S SR NM++EV  GLL A Q    K  L++ +  +N L  S +  N + 
Sbjct: 622  VSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQN 677

Query: 1984 FEVDDIDNRLYD------LTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSL 1823
              V D+ +  Y+      L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+L
Sbjct: 678  GVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNL 737

Query: 1822 LKLVHQSLCLGLQHSSAPLSFRVPSMLSCSTRNHRDVDTPG-----------SHILYAVI 1676
            LKLV Q LCLGLQHS  PLSF++P  LSC+  N + V  PG           S+I YAV+
Sbjct: 738  LKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKV--PGLIQNDTSEYAESYIPYAVV 795

Query: 1675 ENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGN 1496
            ENSFL GL+PLEC+VHSV++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGN
Sbjct: 796  ENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGN 855

Query: 1495 QLVQFSYGVSDKVTSTE--DEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXX 1322
            QLVQFSY +    T ++  +E +C          GG+PVGS++AC+ISEAAYSALD+P  
Sbjct: 856  QLVQFSYNIEHTSTPSDGINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPIS 909

Query: 1321 XXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSE 1142
                               K+   + V+LFLSKKL++  +G EYGA+EVK+HLEK+LFS+
Sbjct: 910  LLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSD 969

Query: 1141 VISDTAIVFSEEN-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKF 965
            ++S   IVFS +N  +TH SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K 
Sbjct: 970  IVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKI 1029

Query: 964  ELPVMHLDSRSH---CSMAGPETSCIVGTVDI---EEGCSNPLAGVRDVMMPFLLGTVIK 803
             LP + + S        M   ++ C   TV I   ++ C   L  VRD+++PFLLG V+K
Sbjct: 1030 NLPDLQITSNGRDCFVDMEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVK 1088

Query: 802  GFVEVEKVDIVWNDLPRGS-RTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDW 626
            G ++V+KVDI+WND P      SSSG L LRV ++       FW ++ +ACL IMD+IDW
Sbjct: 1089 GLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDW 1148

Query: 625  ERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGL 446
            ERS+P++I+D+   YGI+A W +F  SLKS  SDIGK++L EHLLL+A  LS TGEF+GL
Sbjct: 1149 ERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGL 1208

Query: 445  TAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTG 275
             AKG+  Q   TS  SPF Q CFS P   F++A K    D+L G+LDA+AWGK   +G+G
Sbjct: 1209 NAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSG 1268

Query: 274  GNFEIIYSQKDYQVDK-LDIFNTLSTQPSYKDAR-------KASPTKGDKWGKYSFADGF 119
            G+F+I+YS K +++ +  DI+  L +Q S  +             T      +  +A+G 
Sbjct: 1269 GHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGD 1328

Query: 118  AIPATPVKSESIPKEVGNASPSENDILDMVFTLQNILYK 2
            +        E I K V  +  S NDI  +   L+ IL K
Sbjct: 1329 SASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQK 1367


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  675 bits (1741), Expect = 0.0
 Identities = 381/880 (43%), Positives = 547/880 (62%), Gaps = 39/880 (4%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V+ED   L+   ++QLEM   +H   PAIVKAP  + S+WTGKQLLSML P +F++DF  
Sbjct: 516  VKEDGVLLNLFQMQQLEMFCPNHSPFPAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTP 575

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            N V             S WL+D D +++ +L+++Y  K LD L++AQE+L EW+SMRG S
Sbjct: 576  NDVVIRNGELISSSEGSTWLRDADGNLFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLS 635

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+YLSS+S S+ NM++E+  GL E  Q    K  +++      +  D E     ++
Sbjct: 636  VSLSDLYLSSDSNSQKNMMDEIFCGLQEIEQTCNFKQLMVDSNHDFLVGHDEE----VDS 691

Query: 1984 FEVDDIDNRLYD------LTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSL 1823
            F   D++   Y+      L++ ++ +++ VFRD+Q L+Y YA+K+NS+L M ++GSKG+L
Sbjct: 692  FMALDVEQMCYEKQRSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNL 751

Query: 1822 LKLVHQSLCLGLQHSSAPLSFRVPSMLSCSTRNHR-----------DVDTPGSHILYAVI 1676
            LKLV  SLCLGLQHS  PLSFR P  LSC+  N++             ++  ++I YAV+
Sbjct: 752  LKLVQHSLCLGLQHSLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVV 811

Query: 1675 ENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGN 1496
            E+SF++GL+PLE +VHSV++RDSSF +NA++PGTL R++MF+MRDLY AYDGTVRN+YG+
Sbjct: 812  ESSFMTGLNPLESFVHSVTSRDSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGD 871

Query: 1495 QLVQFSYGVSDKVTSTEDEISCQISTGS--DRRCGGEPVGSLAACSISEAAYSALDKPXX 1322
             +VQF Y +    +S        IS  S      GG+PVGSL+AC+ISEAAYSALD+P  
Sbjct: 872  LVVQFCYDIDKDASSPTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVS 931

Query: 1321 XXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSE 1142
                               ++   Q +TLFLS KL R  +GSEY A+EVK+HLE++ FS+
Sbjct: 932  LLETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSD 991

Query: 1141 VISDTAIVFSEENC-QTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKF 965
            +++  +I+FS +   + H +PW+CHFH+ K+ M+++ L V SI  +L  +C +  +  K 
Sbjct: 992  IVTTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTAKTMWKI 1051

Query: 964  ELPVMHLDSR----SHCSMAG-PETSCIVGT-VDIEEGCSNPLAGVRDVMMPFLLGTVIK 803
             LP M + S     SH  M    +T CI  T V+  +     L  +RD+++P+LL  VIK
Sbjct: 1052 SLPDMQITSNGRACSHIDMPNEDDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIK 1111

Query: 802  GFVEVEKVDIVWNDLPRGSR--TSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLID 629
            GF E++KVDI+W D  + S+   SS GEL LRV ++  F   K W ++ N CL IMD+ID
Sbjct: 1112 GFPEIKKVDILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMID 1171

Query: 628  WERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLG 449
            W RS+P++IN +  AYGI+A W  F  +LKS  SD GK+IL EHLL++A+ LS TGEF+G
Sbjct: 1172 WTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVG 1231

Query: 448  LTAKGLITQTS---TPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGT 278
            L +KGL  Q       SPF QACFS P  +FV+AAK  A DDL GT+DA+AWG+   IGT
Sbjct: 1232 LNSKGLRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGT 1291

Query: 277  GGNFEIIYSQKDYQV-DKLDIFNTLSTQPSYK------DARKASPTKGDKWGKYSF-ADG 122
            GG F+IIYS KD ++ + +D++  L +  S +      +  KA   K +K+G     A G
Sbjct: 1292 GGQFDIIYSVKDQRLAEPVDVYKLLGSSISSQKQDVEFEVPKALNFKSEKYGSLLIDALG 1351

Query: 121  FAIPATPVKSESIPKEVGNASPSENDILDMVFTLQNILYK 2
             +      K E+  + +     + +DI  +   L+NIL+K
Sbjct: 1352 DSASEELKKIETKRRSIWRELLTLDDIQRLSRALRNILHK 1391


>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Prunus mume]
          Length = 1452

 Score =  667 bits (1722), Expect = 0.0
 Identities = 385/869 (44%), Positives = 544/869 (62%), Gaps = 28/869 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + ED   L+   ++QLEM       SPA++KAP+     WTGKQ+ SML+P DF++DF  
Sbjct: 496  IMEDGTLLNLLEMQQLEMFCWDVLPSPAVIKAPSLNSHAWTGKQVFSMLLPSDFDYDFAS 555

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            +GV             S+WL+DT  +++ +LV ++  + LD LF+AQE+L EW+SMRG S
Sbjct: 556  DGV-YIKNGELLSSEGSSWLRDTGGNLFQSLVNHFQGQVLDFLFAAQEVLCEWLSMRGLS 614

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSL+D+YL+S+S SR N++EE+S GL EA QA   K  L++  C E L+  +E+  +  T
Sbjct: 615  VSLADLYLASDSGSRNNLMEEISCGLQEAEQACIFKQLLVDN-CQEFLMGCAEENRSPLT 673

Query: 1984 FEVDDI---DNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            F+ +       +   L+++   A++ +FRD+Q L + YA K+NS+L M+++GSKG+L KL
Sbjct: 674  FDAEYFCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKL 733

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRNHRDV-----------DTPGSHILYAVIENS 1667
            V  S+CLGLQHS  PLSFR+P+ LSC+  N++             +   S+I  AV+E+S
Sbjct: 734  VQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIPSAVVESS 793

Query: 1666 FLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLV 1487
            FL+GL+PLEC+VHSV++RDSSF  NA++PGTL RK+MF MRDLY AYDGTVRNAYGNQLV
Sbjct: 794  FLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRNAYGNQLV 853

Query: 1486 QFSYGVS-DKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXX 1310
            QFSY +  DK  ST    S   ST +    GG+PVGSL+AC++SEAAYSALD+P      
Sbjct: 854  QFSYDIDMDKSDST--STSYAKSTTACDGIGGQPVGSLSACALSEAAYSALDQPVSLLET 911

Query: 1309 XXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISD 1130
                           K++  Q ++LFLS+KL R  +G EYGA+EVK+HL  + FS+++S 
Sbjct: 912  SPLLNLKNILECGSKKSSAKQTMSLFLSEKLGRRRHGFEYGALEVKNHLVGLTFSDIVST 971

Query: 1129 TAIVF-SEENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPV 953
              I+F S+ N Q   SPW+ HFHI KE ++K+ L V S+  +L   C S   + K  L  
Sbjct: 972  VMIIFSSQNNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKVVLRS 1031

Query: 952  MHLDSRSHCSMA-----GPETSCIVGTV-DIEEGCSNPLAGVRDVMMPFLLGTVIKGFVE 791
            + + S+  CS A       +T CI  T+ +  +  S  L   RD+++PFLLGTV+KGF+E
Sbjct: 1032 LLITSKG-CSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLE 1090

Query: 790  VEKVDIVWNDLPRGSRT--SSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERS 617
            V+KVDI+WND PR S+    SSGEL LRVSM+ K    + WS++ + CL IM+LIDW RS
Sbjct: 1091 VKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMNLIDWSRS 1150

Query: 616  YPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAK 437
            +P++++D   AYGI+A W +F  +L++  +DIGK IL +HL+L+AD LS TGEF+GL AK
Sbjct: 1151 HPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAK 1210

Query: 436  GLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNF 266
            G+  Q    S  SPF QACFS P   F++AAK    D+L G+++A+AWG   P GTG  F
Sbjct: 1211 GIAQQKGHASVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQF 1270

Query: 265  EIIYSQKDYQVDK-LDIFNTLSTQPSYKDARKASPTKGDKWGKYSFADGFAIPATPVKSE 89
            +I+YS++   + K L+ ++ L +Q S         +K   W   +            KSE
Sbjct: 1271 DILYSKEGLNLSKPLNPYDLLGSQISSSSENAFETSKA--WNNNTLDKCDVTSIGLEKSE 1328

Query: 88   SIPKEVGNASPSENDILDMVFTLQNILYK 2
            ++ K V     + NDI     TL+ IL K
Sbjct: 1329 NVFKSVIRKYLTINDIQKWTQTLKRILRK 1357


>ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nicotiana tomentosiformis]
          Length = 1211

 Score =  662 bits (1707), Expect = 0.0
 Identities = 363/788 (46%), Positives = 503/788 (63%), Gaps = 25/788 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V E    L +  ++QL+M   H    PAIV+AP+   S WTGKQL S+ +P D + DFP 
Sbjct: 248  VLEGGVFLDRFQVQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFSLFLPSDLDCDFPS 307

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  ++++ +LV+++G  TLD+L++AQ +L EW+SMRG S
Sbjct: 308  NGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLS 367

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+Y+SS+  SR NM++EV  GL EA +       L++R   + L    E +     
Sbjct: 368  VSLSDLYISSDPYSRENMIDEVFCGLQEA-ERLSYIQLLMSRYNHDFLAGSLEVSQKAMG 426

Query: 1984 FEVD---DIDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            F ++    +  +   L++ ++ +++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKL
Sbjct: 427  FNLEFMSIMQQKSASLSQASVSSFKHVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKL 486

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENS 1667
            V  S+CLGLQ S  PLSFR+P  LSC   N           H   + PG +I  AV+ENS
Sbjct: 487  VQHSMCLGLQQSLVPLSFRMPRRLSCDAWNNHKAHLPFEKAHNVPERPGPYIPCAVVENS 546

Query: 1666 FLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLV 1487
            FL+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY  YDGTVRNAYGNQ+V
Sbjct: 547  FLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYSGYDGTVRNAYGNQIV 606

Query: 1486 QFSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXX 1307
            QFSY  +D+++ST +  S  I        GG PVGSLAAC+ISEAAYSALD P       
Sbjct: 607  QFSYYSADQISSTYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPVGALEPS 658

Query: 1306 XXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDT 1127
                            +  +  TLFLS++L R  +G EYGAIEVK HLE++L S+++S  
Sbjct: 659  PLLNLKKILEAGVKSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTV 718

Query: 1126 AIVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVM 950
             I FS E C+ TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +
Sbjct: 719  MICFSPETCKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 778

Query: 949  HLDSRSHCSMAGPETS----CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVE 785
            H+  +  CS A  + +    CI V  V+  +   + L  +RD+++PFLL TVIKGF   +
Sbjct: 779  HITCKD-CSAAEMQKANSKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFK 837

Query: 784  KVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYP 611
            KVDI+W +LP  S++S  S+GEL L+V M+       FW+ + ++CL IMDLIDWE+S+P
Sbjct: 838  KVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEQSHP 897

Query: 610  NSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGL 431
            ++++D++ AYG++ AW +F R+L S  S+ GK IL EHL+L AD L+ TGEF+ L  KGL
Sbjct: 898  DNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILLEHLVLAADCLTATGEFVPLNTKGL 957

Query: 430  ITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEI 260
              Q       SPF QACFS P  +FV+AAK E  DDL G+L+A+AWGK    GTG +F+I
Sbjct: 958  AQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDI 1017

Query: 259  IYSQKDYQ 236
            IYS K Y+
Sbjct: 1018 IYSGKGYE 1025


>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1447

 Score =  662 bits (1707), Expect = 0.0
 Identities = 363/788 (46%), Positives = 503/788 (63%), Gaps = 25/788 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V E    L +  ++QL+M   H    PAIV+AP+   S WTGKQL S+ +P D + DFP 
Sbjct: 484  VLEGGVFLDRFQVQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFSLFLPSDLDCDFPS 543

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  ++++ +LV+++G  TLD+L++AQ +L EW+SMRG S
Sbjct: 544  NGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLS 603

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+Y+SS+  SR NM++EV  GL EA +       L++R   + L    E +     
Sbjct: 604  VSLSDLYISSDPYSRENMIDEVFCGLQEA-ERLSYIQLLMSRYNHDFLAGSLEVSQKAMG 662

Query: 1984 FEVD---DIDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            F ++    +  +   L++ ++ +++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKL
Sbjct: 663  FNLEFMSIMQQKSASLSQASVSSFKHVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKL 722

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENS 1667
            V  S+CLGLQ S  PLSFR+P  LSC   N           H   + PG +I  AV+ENS
Sbjct: 723  VQHSMCLGLQQSLVPLSFRMPRRLSCDAWNNHKAHLPFEKAHNVPERPGPYIPCAVVENS 782

Query: 1666 FLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLV 1487
            FL+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY  YDGTVRNAYGNQ+V
Sbjct: 783  FLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYSGYDGTVRNAYGNQIV 842

Query: 1486 QFSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXX 1307
            QFSY  +D+++ST +  S  I        GG PVGSLAAC+ISEAAYSALD P       
Sbjct: 843  QFSYYSADQISSTYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPVGALEPS 894

Query: 1306 XXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDT 1127
                            +  +  TLFLS++L R  +G EYGAIEVK HLE++L S+++S  
Sbjct: 895  PLLNLKKILEAGVKSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTV 954

Query: 1126 AIVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVM 950
             I FS E C+ TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +
Sbjct: 955  MICFSPETCKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 1014

Query: 949  HLDSRSHCSMAGPETS----CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVE 785
            H+  +  CS A  + +    CI V  V+  +   + L  +RD+++PFLL TVIKGF   +
Sbjct: 1015 HITCKD-CSAAEMQKANSKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFK 1073

Query: 784  KVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYP 611
            KVDI+W +LP  S++S  S+GEL L+V M+       FW+ + ++CL IMDLIDWE+S+P
Sbjct: 1074 KVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEQSHP 1133

Query: 610  NSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGL 431
            ++++D++ AYG++ AW +F R+L S  S+ GK IL EHL+L AD L+ TGEF+ L  KGL
Sbjct: 1134 DNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILLEHLVLAADCLTATGEFVPLNTKGL 1193

Query: 430  ITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEI 260
              Q       SPF QACFS P  +FV+AAK E  DDL G+L+A+AWGK    GTG +F+I
Sbjct: 1194 AQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDI 1253

Query: 259  IYSQKDYQ 236
            IYS K Y+
Sbjct: 1254 IYSGKGYE 1261


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  659 bits (1701), Expect = 0.0
 Identities = 362/798 (45%), Positives = 512/798 (64%), Gaps = 25/798 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + E    L +  ++QL+M         AIVKAP   +  WTGKQL S+L+P D  + FP 
Sbjct: 275  ILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPS 334

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  D+++ +LV+++G  TLD+L++AQ +L EW+SMRG S
Sbjct: 335  NGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLS 394

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLI--NRTCMENLLRDSEDTHNC 1991
            VSLSD+Y+SS+S SR NM++EV  GL EA +    +  +I  N+  +   L +S+++   
Sbjct: 395  VSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSMGF 454

Query: 1990 ETFEVDDIDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLV 1811
            +   +  +  +   L++ +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV
Sbjct: 455  DFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLV 514

Query: 1810 HQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSF 1664
              S+CLGLQ S  P+SFR+P  LSC   N           H+  + PGS+I  AV+++SF
Sbjct: 515  QHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSF 574

Query: 1663 LSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQ 1484
            L+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQ
Sbjct: 575  LAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQ 634

Query: 1483 FSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXX 1304
            FSY  ++K+ ST+   +       +   GG PVGSLAAC+ISEAAYSALD+P        
Sbjct: 635  FSYYEAEKIASTKG--TGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSP 692

Query: 1303 XXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTA 1124
                           +  +  ++FLSK+L R  +G EYGA+EVK HLE++L SEV+S   
Sbjct: 693  LLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVM 752

Query: 1123 IVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMH 947
            I FS E  + TH  PW+CHFHI KE ++ + L + SI  AL     +  +K   +LP +H
Sbjct: 753  ICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLH 812

Query: 946  LDSRSHCSM--AGPETSCIVGTVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEK 782
            +  +  CS+  A  E S I  TV + E   +P   L  +RDV++PFLL TVIKGF   +K
Sbjct: 813  ITCKD-CSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKK 871

Query: 781  VDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPN 608
            VDI+W +LP  S++S  S+GEL L+V M+     +KFW+ + ++CL I DLIDWERSYP+
Sbjct: 872  VDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPD 931

Query: 607  SINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLI 428
             ++D++ AYGI+ AW +F   L S  S+ GK IL EHL+L AD L+ TGEF+ L+AKGL 
Sbjct: 932  DVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLT 991

Query: 427  TQTSTP---SPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEII 257
             Q       SPF QACFS P  +FV+AAK    D+L G+L+++AWGK   IGTG +F+II
Sbjct: 992  LQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDII 1051

Query: 256  YSQKDYQ-VDKLDIFNTL 206
            YS K Y+  + +D++  L
Sbjct: 1052 YSGKGYEPAEPIDVYTLL 1069


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  659 bits (1701), Expect = 0.0
 Identities = 362/798 (45%), Positives = 512/798 (64%), Gaps = 25/798 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + E    L +  ++QL+M         AIVKAP   +  WTGKQL S+L+P D  + FP 
Sbjct: 488  ILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPS 547

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  D+++ +LV+++G  TLD+L++AQ +L EW+SMRG S
Sbjct: 548  NGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLS 607

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLI--NRTCMENLLRDSEDTHNC 1991
            VSLSD+Y+SS+S SR NM++EV  GL EA +    +  +I  N+  +   L +S+++   
Sbjct: 608  VSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSMGF 667

Query: 1990 ETFEVDDIDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLV 1811
            +   +  +  +   L++ +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV
Sbjct: 668  DFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLV 727

Query: 1810 HQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSF 1664
              S+CLGLQ S  P+SFR+P  LSC   N           H+  + PGS+I  AV+++SF
Sbjct: 728  QHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSF 787

Query: 1663 LSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQ 1484
            L+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQ
Sbjct: 788  LAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQ 847

Query: 1483 FSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXX 1304
            FSY  ++K+ ST+   +       +   GG PVGSLAAC+ISEAAYSALD+P        
Sbjct: 848  FSYYEAEKIASTKG--TGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSP 905

Query: 1303 XXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTA 1124
                           +  +  ++FLSK+L R  +G EYGA+EVK HLE++L SEV+S   
Sbjct: 906  LLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVM 965

Query: 1123 IVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMH 947
            I FS E  + TH  PW+CHFHI KE ++ + L + SI  AL     +  +K   +LP +H
Sbjct: 966  ICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLH 1025

Query: 946  LDSRSHCSM--AGPETSCIVGTVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEK 782
            +  +  CS+  A  E S I  TV + E   +P   L  +RDV++PFLL TVIKGF   +K
Sbjct: 1026 ITCKD-CSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKK 1084

Query: 781  VDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPN 608
            VDI+W +LP  S++S  S+GEL L+V M+     +KFW+ + ++CL I DLIDWERSYP+
Sbjct: 1085 VDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPD 1144

Query: 607  SINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLI 428
             ++D++ AYGI+ AW +F   L S  S+ GK IL EHL+L AD L+ TGEF+ L+AKGL 
Sbjct: 1145 DVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLT 1204

Query: 427  TQTSTP---SPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEII 257
             Q       SPF QACFS P  +FV+AAK    D+L G+L+++AWGK   IGTG +F+II
Sbjct: 1205 LQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDII 1264

Query: 256  YSQKDYQ-VDKLDIFNTL 206
            YS K Y+  + +D++  L
Sbjct: 1265 YSGKGYEPAEPIDVYTLL 1282


>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
          Length = 1453

 Score =  658 bits (1697), Expect = 0.0
 Identities = 376/819 (45%), Positives = 525/819 (64%), Gaps = 23/819 (2%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V ED   L    ++QL+M       SPAIVKAP      WTGKQL+SML+P+ F+ DFP 
Sbjct: 511  VMEDGVFLSLFEMQQLQMFCPRQLLSPAIVKAPLPNDCAWTGKQLVSMLLPRGFDHDFPS 570

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            N V               WL+DTD +++ +L+++   + LD L +AQE+L EW+SMRG S
Sbjct: 571  NNVYIRDGELISSEGSF-WLRDTDGNLFQSLIKHCQSQVLDFLCTAQEVLCEWLSMRGLS 629

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+YL  +S +  NM+ EVS GL +A      K F+++ +C + L  + ED  +   
Sbjct: 630  VSLSDLYLCPDSYAWKNMMCEVSYGLQDADHTCNIKQFMVD-SCRDFLAGNGEDDEHPMG 688

Query: 1984 FEVDDI---DNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
             +V+ +     R   L++ ++ A++ VFRD+Q L Y YASK+N+++ M ++GSKG+LLKL
Sbjct: 689  LDVEHLCYEKQRSAALSQASVDAFKHVFRDIQILAYKYASKDNALMTMFKAGSKGNLLKL 748

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRNHRDVDTPGS----HILYAVIENSFLSGLDP 1646
            V  S+CLGLQHS  PLSFR+P  LSC   N +  D        +I  AV+++SFL+GL+P
Sbjct: 749  VQHSMCLGLQHSLVPLSFRMPHQLSCDAWNKQKDDNATECAKCYIPSAVVKSSFLTGLNP 808

Query: 1645 LECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVS 1466
            LEC+VHSV++RDSSF +NA++PGTL R++MF+MRD++ AYDGT+RNAYGNQLVQFSY  +
Sbjct: 809  LECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDIHAAYDGTIRNAYGNQLVQFSY-YN 867

Query: 1465 DKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXX 1286
             + TS     S QI    D   GG PVGSLAAC+ISEAAYSALD+P              
Sbjct: 868  REETSCPTNCSGQIIDTFDG-IGGRPVGSLAACAISEAAYSALDQPISLLEKSPLLNLKN 926

Query: 1285 XXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFS-E 1109
                   K+   ++VTLFLS KL R  +G EYGA+EV++HLE++LFS+++S + I+ S +
Sbjct: 927  VLECGLKKSNAHKSVTLFLSDKLGRRRHGFEYGALEVQNHLERLLFSDIVSISRIIHSPQ 986

Query: 1108 ENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSH 929
             + +T  SPW+CHFH+ KE M+K+ L++ SI  AL K C     K +  LP + +  +  
Sbjct: 987  SDSKTRFSPWVCHFHVDKEIMKKRSLSIHSIIDALYKQC-----KSQTILPNVQITCKD- 1040

Query: 928  CSMAG-----PETSCIVGTV-DIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVW 767
            CS+A       +T CI  TV +  +  S  L  +RD+++PFLL TV+KG +E+EKVDI+W
Sbjct: 1041 CSVADNHREIEDTLCITVTVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEKVDILW 1100

Query: 766  NDLPR--GSRTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDV 593
            N+ PR   S   S GEL LRVSM+ +    + W+++ + CLPIMD+IDW RS+ ++I D 
Sbjct: 1101 NERPRIQKSHNRSYGELYLRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSDNIRDF 1160

Query: 592  SHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ--- 422
              AYGI+A W  F  +LKS  SD+GKS+L EHL+L+A+ LS TGEF+GL AKG   Q   
Sbjct: 1161 CLAYGIDAGWEFFLNNLKSAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWKRQREH 1220

Query: 421  TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKD 242
             S  SPF QACFS P   F++AAK    DDL G+LDA+AWGK  P+GT G F+IIYS K 
Sbjct: 1221 ASVLSPFVQACFSSPGSCFIKAAKGGVMDDLRGSLDALAWGKTPPVGT-GQFDIIYSGKG 1279

Query: 241  YQVDK-LDIFNTLSTQPSYKDAR---KASPTKGDKWGKY 137
            +++ K +D+++ L +Q S +      +   T+G K  KY
Sbjct: 1280 FELSKPVDVYDLLGSQMSAEKQNYEFEVPFTRGCKSDKY 1318


>ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nicotiana sylvestris]
          Length = 1254

 Score =  657 bits (1695), Expect = 0.0
 Identities = 361/788 (45%), Positives = 502/788 (63%), Gaps = 25/788 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + E+   L +  ++QL+M   H    PAIV+AP+   S WTGKQL  + +P D + DFP 
Sbjct: 291  ILEEGVFLDRFQMQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFGLFLPSDLDCDFPS 350

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  ++++ +LV+++G  TLD+L++AQ +L EW+SMRG S
Sbjct: 351  NGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLS 410

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+Y+SS+  SR NM++EV  GL EA +       L+ R   + L    E +     
Sbjct: 411  VSLSDLYISSDPYSRENMIDEVFCGLQEA-ERLSYVQLLMTRYNHDFLAGSLEVSQKAMG 469

Query: 1984 FEVDDIDNRLY---DLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            F+++ +   L     L++ ++ A++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKL
Sbjct: 470  FDLEFMSIMLQKSASLSQASVTAFKQVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKL 529

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENS 1667
            V  S+CLGLQ S  PLSFR+P  LSC   N           H   + PGS+I  AV+ENS
Sbjct: 530  VQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKAHLPFEKAHNVPERPGSYIPCAVVENS 589

Query: 1666 FLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLV 1487
            FL+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+V
Sbjct: 590  FLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYIGYDGTVRNAYGNQIV 649

Query: 1486 QFSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXX 1307
            QFSY  +D++ ST +  S  I        GG PVGSLAAC+ISEAAYSALD P       
Sbjct: 650  QFSYYNTDQIASTYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPIGALEPS 701

Query: 1306 XXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDT 1127
                            +  +  +LFLSK+L R  +G EYGA+EVK HLE++L S+++S  
Sbjct: 702  PLLNLKKILEAGVKSNSSEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTV 761

Query: 1126 AIVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVM 950
             I FS    + TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +
Sbjct: 762  MICFSPGTYKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 821

Query: 949  HLDSRSHCSMAGPETS----CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVE 785
            H+  +  CS+A  + +    CI V  V+  +   + L  +RD+++PFLL TVIKGF   +
Sbjct: 822  HITCKD-CSVAEMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFK 880

Query: 784  KVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYP 611
            KVDI+W +LP  S++S  S+GEL L+V M+       FW+ + ++CL IMDLIDWE S+P
Sbjct: 881  KVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEWSHP 940

Query: 610  NSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGL 431
            ++++D++ AYG++ AW +F R+L S  S+ GK IL EHL+L AD L+ TGEF+ L  KGL
Sbjct: 941  DNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILPEHLVLAADCLTATGEFVPLNTKGL 1000

Query: 430  ITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEI 260
              Q       SPF QACFS P  +FV+AAK E  DDL G+L+A+AWGK    GTG +F+I
Sbjct: 1001 AQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDI 1060

Query: 259  IYSQKDYQ 236
            IYS K Y+
Sbjct: 1061 IYSGKGYE 1068


>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Nicotiana sylvestris]
            gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Nicotiana
            sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Nicotiana sylvestris]
          Length = 1447

 Score =  657 bits (1695), Expect = 0.0
 Identities = 361/788 (45%), Positives = 502/788 (63%), Gaps = 25/788 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + E+   L +  ++QL+M   H    PAIV+AP+   S WTGKQL  + +P D + DFP 
Sbjct: 484  ILEEGVFLDRFQMQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFGLFLPSDLDCDFPS 543

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  ++++ +LV+++G  TLD+L++AQ +L EW+SMRG S
Sbjct: 544  NGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLS 603

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+Y+SS+  SR NM++EV  GL EA +       L+ R   + L    E +     
Sbjct: 604  VSLSDLYISSDPYSRENMIDEVFCGLQEA-ERLSYVQLLMTRYNHDFLAGSLEVSQKAMG 662

Query: 1984 FEVDDIDNRLY---DLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            F+++ +   L     L++ ++ A++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKL
Sbjct: 663  FDLEFMSIMLQKSASLSQASVTAFKQVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKL 722

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENS 1667
            V  S+CLGLQ S  PLSFR+P  LSC   N           H   + PGS+I  AV+ENS
Sbjct: 723  VQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKAHLPFEKAHNVPERPGSYIPCAVVENS 782

Query: 1666 FLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLV 1487
            FL+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+V
Sbjct: 783  FLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYIGYDGTVRNAYGNQIV 842

Query: 1486 QFSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXX 1307
            QFSY  +D++ ST +  S  I        GG PVGSLAAC+ISEAAYSALD P       
Sbjct: 843  QFSYYNTDQIASTYNRASHAI--------GGHPVGSLAACAISEAAYSALDLPIGALEPS 894

Query: 1306 XXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDT 1127
                            +  +  +LFLSK+L R  +G EYGA+EVK HLE++L S+++S  
Sbjct: 895  PLLNLKKILEAGVKSNSSEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTV 954

Query: 1126 AIVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVM 950
             I FS    + TH SPW+CHFHI KE ++ + L + S+  AL     S   +   +LP +
Sbjct: 955  MICFSPGTYKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 1014

Query: 949  HLDSRSHCSMAGPETS----CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVE 785
            H+  +  CS+A  + +    CI V  V+  +   + L  +RD+++PFLL TVIKGF   +
Sbjct: 1015 HITCKD-CSVAEMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFK 1073

Query: 784  KVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYP 611
            KVDI+W +LP  S++S  S+GEL L+V M+       FW+ + ++CL IMDLIDWE S+P
Sbjct: 1074 KVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEWSHP 1133

Query: 610  NSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGL 431
            ++++D++ AYG++ AW +F R+L S  S+ GK IL EHL+L AD L+ TGEF+ L  KGL
Sbjct: 1134 DNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILPEHLVLAADCLTATGEFVPLNTKGL 1193

Query: 430  ITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEI 260
              Q       SPF QACFS P  +FV+AAK E  DDL G+L+A+AWGK    GTG +F+I
Sbjct: 1194 AQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDI 1253

Query: 259  IYSQKDYQ 236
            IYS K Y+
Sbjct: 1254 IYSGKGYE 1261


>gb|KDP25521.1| hypothetical protein JCGZ_20677 [Jatropha curcas]
          Length = 942

 Score =  657 bits (1694), Expect = 0.0
 Identities = 375/817 (45%), Positives = 524/817 (64%), Gaps = 23/817 (2%)
 Frame = -1

Query: 2518 EDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPVNG 2339
            ED   L    ++QL+M       SPAIVKAP      WTGKQL+SML+P+ F+ DFP N 
Sbjct: 2    EDGVFLSLFEMQQLQMFCPRQLLSPAIVKAPLPNDCAWTGKQLVSMLLPRGFDHDFPSNN 61

Query: 2338 VCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVS 2159
            V               WL+DTD +++ +L+++   + LD L +AQE+L EW+SMRG SVS
Sbjct: 62   VYIRDGELISSEGSF-WLRDTDGNLFQSLIKHCQSQVLDFLCTAQEVLCEWLSMRGLSVS 120

Query: 2158 LSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFE 1979
            LSD+YL  +S +  NM+ EVS GL +A      K F+++ +C + L  + ED  +    +
Sbjct: 121  LSDLYLCPDSYAWKNMMCEVSYGLQDADHTCNIKQFMVD-SCRDFLAGNGEDDEHPMGLD 179

Query: 1978 VDDI---DNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVH 1808
            V+ +     R   L++ ++ A++ VFRD+Q L Y YASK+N+++ M ++GSKG+LLKLV 
Sbjct: 180  VEHLCYEKQRSAALSQASVDAFKHVFRDIQILAYKYASKDNALMTMFKAGSKGNLLKLVQ 239

Query: 1807 QSLCLGLQHSSAPLSFRVPSMLSCSTRNHRDVDTPGS----HILYAVIENSFLSGLDPLE 1640
             S+CLGLQHS  PLSFR+P  LSC   N +  D        +I  AV+++SFL+GL+PLE
Sbjct: 240  HSMCLGLQHSLVPLSFRMPHQLSCDAWNKQKDDNATECAKCYIPSAVVKSSFLTGLNPLE 299

Query: 1639 CYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDK 1460
            C+VHSV++RDSSF +NA++PGTL R++MF+MRD++ AYDGT+RNAYGNQLVQFSY  + +
Sbjct: 300  CFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDIHAAYDGTIRNAYGNQLVQFSY-YNRE 358

Query: 1459 VTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXX 1280
             TS     S QI    D   GG PVGSLAAC+ISEAAYSALD+P                
Sbjct: 359  ETSCPTNCSGQIIDTFDG-IGGRPVGSLAACAISEAAYSALDQPISLLEKSPLLNLKNVL 417

Query: 1279 XXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFS-EEN 1103
                 K+   ++VTLFLS KL R  +G EYGA+EV++HLE++LFS+++S + I+ S + +
Sbjct: 418  ECGLKKSNAHKSVTLFLSDKLGRRRHGFEYGALEVQNHLERLLFSDIVSISRIIHSPQSD 477

Query: 1102 CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCS 923
             +T  SPW+CHFH+ KE M+K+ L++ SI  AL K C     K +  LP + +  +  CS
Sbjct: 478  SKTRFSPWVCHFHVDKEIMKKRSLSIHSIIDALYKQC-----KSQTILPNVQITCKD-CS 531

Query: 922  MAG-----PETSCIVGTV-DIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWND 761
            +A       +T CI  TV +  +  S  L  +RD+++PFLL TV+KG +E+EKVDI+WN+
Sbjct: 532  VADNHREIEDTLCITVTVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEKVDILWNE 591

Query: 760  LPR--GSRTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSH 587
             PR   S   S GEL LRVSM+ +    + W+++ + CLPIMD+IDW RS+ ++I D   
Sbjct: 592  RPRIQKSHNRSYGELYLRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSDNIRDFCL 651

Query: 586  AYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TS 416
            AYGI+A W  F  +LKS  SD+GKS+L EHL+L+A+ LS TGEF+GL AKG   Q    S
Sbjct: 652  AYGIDAGWEFFLNNLKSAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWKRQREHAS 711

Query: 415  TPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQ 236
              SPF QACFS P   F++AAK    DDL G+LDA+AWGK  P+GT G F+IIYS K ++
Sbjct: 712  VLSPFVQACFSSPGSCFIKAAKGGVMDDLRGSLDALAWGKTPPVGT-GQFDIIYSGKGFE 770

Query: 235  VDK-LDIFNTLSTQPSYKDAR---KASPTKGDKWGKY 137
            + K +D+++ L +Q S +      +   T+G K  KY
Sbjct: 771  LSKPVDVYDLLGSQMSAEKQNYEFEVPFTRGCKSDKY 807


>ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324654|ref|XP_010053344.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324662|ref|XP_010053345.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324668|ref|XP_010053346.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324674|ref|XP_010053347.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324680|ref|XP_010053348.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324687|ref|XP_010053349.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|629112658|gb|KCW77618.1| hypothetical protein
            EUGRSUZ_D01929 [Eucalyptus grandis]
          Length = 1473

 Score =  655 bits (1689), Expect = 0.0
 Identities = 380/880 (43%), Positives = 555/880 (63%), Gaps = 39/880 (4%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + ED  C ++  I+QL+ML  +    P     P+ +  MWTGKQL  ML+P+ F +    
Sbjct: 512  ILEDSVCFNRFDIQQLKMLCPNDLLPPV----PSVEGGMWTGKQLFQMLLPRGFEWFSSS 567

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            N +             SAWL+D DD+++  L+     + L+IL +AQE+L EW+SMRGFS
Sbjct: 568  NDI-GISNGEIVFSEGSAWLRDADDNLFQRLITFCQSRVLNILHAAQEVLCEWLSMRGFS 626

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+YL+S+S SR NM+EE+S GL EA +    K F+++ +   + L  + +  N   
Sbjct: 627  VSLSDLYLASDSFSRENMIEEISCGLQEADETCNIKQFMVDSS--RDFLAGNGEEINAMA 684

Query: 1984 FEVDDI---DNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            F  + +     +   L++ ++ A++ VFRD+Q L Y YASK+NSM++M +SGSKG+LLK+
Sbjct: 685  FNSERLCYEKQKSPALSQASVDAFKRVFRDIQSLAYKYASKDNSMISMFKSGSKGNLLKI 744

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRNH---RDVDT------PGSHILYAVIENSFL 1661
               S+C+GLQHS  PLSF +P  LS ++ N    R++D       P S I +AV++NSFL
Sbjct: 745  AQHSMCVGLQHSLVPLSFDIPHHLSNASYNSHKGRNIDRTHDFPFPQSFIPFAVVKNSFL 804

Query: 1660 SGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQF 1481
            SGL+PLEC+VHSV+NR SSF ENAE+PGTL RK+MF+MRDLY++YDGTVR+AYGNQL++F
Sbjct: 805  SGLNPLECFVHSVTNRASSFSENAEVPGTLHRKLMFFMRDLYVSYDGTVRSAYGNQLIEF 864

Query: 1480 SYGV---SDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXX 1310
            SYG+   S    S +D +SC+ +  S    GG+PVGS++AC+ISEAAYSALD+P      
Sbjct: 865  SYGIEKQSSTPCSRKDSLSCE-NAKSGEGMGGQPVGSMSACAISEAAYSALDQPISLLEM 923

Query: 1309 XXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISD 1130
                           K+   Q ++LFLSK+L +  +G EYGA+ VK HLE++ FS+++S 
Sbjct: 924  SPLLNLKNVLESGTKKSNSCQTMSLFLSKQLAKHRHGLEYGALAVKDHLERMFFSDIVST 983

Query: 1129 TAIVFSEENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVM 950
            T I+FS EN   +LSPW+CHFHI K+ + ++GL + S+  +L++ C + L + + +LP +
Sbjct: 984  TMIIFSPENYNQNLSPWVCHFHIRKDIITRRGLILHSVIGSLKRRCHAFLKELRVDLPPL 1043

Query: 949  HLDSRSHCSMAGPETS------CIVGTVDIEEG---CSNP--LAGVRDVMMPFLLGTVIK 803
             + + + CS+ G E        CI  T+ +EE     + P  L  +++ ++P LL TVIK
Sbjct: 1044 QI-TINDCSLTGEEREDAANIFCITLTM-VEESKKVATQPTLLKKLQEHVIPCLLETVIK 1101

Query: 802  GFVEVEKVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLID 629
            GF+E++KVDI+W++  + S++   S+GEL LRVSM+   + +K WS++ N C+PIMD ID
Sbjct: 1102 GFMEIKKVDILWSESGKLSKSKPVSTGELYLRVSMSAHSEKMKLWSVLMNNCVPIMDAID 1161

Query: 628  WERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLG 449
            W RS+P++I + S A GI+A W +F  SL S  SD GK++L EHL+L+A+ LS +GEF+G
Sbjct: 1162 WSRSHPDNIREFSLANGIDAGWKYFLNSLGSAVSDTGKTVLPEHLVLLANCLSTSGEFVG 1221

Query: 448  LTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGT 278
            L  KG+  Q   +S  SPF QACFS P   F++AAK    D L G+LDA+AWGK   +GT
Sbjct: 1222 LNPKGMSRQREISSVASPFVQACFSNPGPCFIKAAKAGTVDSLQGSLDALAWGKVPSLGT 1281

Query: 277  GGNFEIIYSQKDYQVDKLD-IFNTL-----STQPSYK-DARKASPTKGDKWG-KYSFADG 122
            GG FEIIYS K +++ K + ++N L     STQ + K +   A     D  G ++  AD 
Sbjct: 1282 GGLFEIIYSGKGHELAKPESVYNLLGNKVSSTQQNIKLEVPNAGSHVPDTCGAEFVQADS 1341

Query: 121  FAIPATPVKSESIPKEVGNASPSENDILDMVFTLQNILYK 2
                +  +K   I K +     + NDI  +   L+ ILYK
Sbjct: 1342 V---SKVLKKLEINKSLFRKFITFNDIQKLSLELKKILYK 1378


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  652 bits (1682), Expect = 0.0
 Identities = 362/779 (46%), Positives = 510/779 (65%), Gaps = 19/779 (2%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            V ED   L  + ++QL+M   H   SPA+ KAP+     WTGKQL+SML+P+ F+ + P 
Sbjct: 508  VMEDGVLLSLQQMQQLQMFCPHQLFSPAVRKAPSLNGCAWTGKQLISMLLPRGFDHECPS 567

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            + V               WL+DTD +++ +L++   D+ LD L+ AQE+L EW+SMRG S
Sbjct: 568  SDVYIRDGELISSEGSF-WLRDTDGNLFQSLIKQCQDQVLDFLYIAQEVLCEWLSMRGLS 626

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLINRTCMENLLRDSEDTHNCET 1985
            VSLSD+YL  +S SR NM++EV  GL +A      K F+++ +C + L    ED      
Sbjct: 627  VSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMKQFMVD-SCRDFLASIDEDEQYSVN 685

Query: 1984 FEVDDI---DNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKL 1814
            F+V+ +     R   L++ ++ A++ VFRD+Q L Y YASK+N+++AM +SGSKG+LLK+
Sbjct: 686  FDVEHLCHEKQRSAALSQASVDAFKHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKV 745

Query: 1813 VHQSLCLGLQHSSAPLSFRVPSMLSCSTRNHRD----VDTPGSHILYAVIENSFLSGLDP 1646
            V  S+CLGLQHS  PLSFR+P  LSC   N +     V+   S+I  AV+E  FL+GL+P
Sbjct: 746  VQHSMCLGLQHSLVPLSFRMPLQLSCDAWNKQKAENAVECARSYIPSAVVEGCFLTGLNP 805

Query: 1645 LECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVS 1466
            LEC+VHSV++R+SSF +NA++PGTL R++MF+MRD++ AYDG+VR+AYGNQL+QFSY + 
Sbjct: 806  LECFVHSVTSRESSFSDNADLPGTLTRRLMFFMRDVHAAYDGSVRSAYGNQLIQFSYNI- 864

Query: 1465 DKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXX 1286
            D+  S E   + +I    D    G+PVGSLAACSISEAAYSALD+P              
Sbjct: 865  DEGRSAETYGTAKIVDNYD-GMAGKPVGSLAACSISEAAYSALDQPISLLEKSPLLNLKN 923

Query: 1285 XXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEE 1106
                   K+   ++++LFLS+KL R  +G EYGA++V+ HLE++LFS+++S + I+FS +
Sbjct: 924  VLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYGALKVQDHLERLLFSDIVSVSRIIFSSQ 983

Query: 1105 N-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSH 929
            +  +T  SPW+CHFH+ KE M+K+ LNV SI + L   C SN +     LP + +  +S 
Sbjct: 984  SESKTCFSPWVCHFHVYKEIMKKRNLNVDSIINILNGRCKSNTN-----LPNVQISCKS- 1037

Query: 928  CSMAG-----PETSCIVGT-VDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVW 767
            CS+A       ET CI  T V+  +  S  LA ++D+M+PFLL TV+KG +E+ KVDI+W
Sbjct: 1038 CSIADNHREKEETLCITVTIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEINKVDILW 1097

Query: 766  NDLPRGSRTSSS--GELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDV 593
             D PR S+T +   GEL LRVSM+   +  + W+++ + CLPIMD+IDW  S P+++ D 
Sbjct: 1098 KDWPRISKTHNQPYGELYLRVSMSADSEKTRLWNLLMDYCLPIMDMIDWTCSRPDNVRDF 1157

Query: 592  SHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ--- 422
            S AYGI+A W  F + L+S  SD+GKS+L EH+LL+A+ LS TGEF+GL AKG   Q   
Sbjct: 1158 SLAYGIDAGWKFFLQRLESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQRED 1217

Query: 421  TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQK 245
             S  SPF QACFS P   F++AAK   KDDL G+LDA+AWGK   +GT G F+I+YS K
Sbjct: 1218 ASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGSLDALAWGKVPSVGT-GQFDIVYSGK 1275


>ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Solanum lycopersicum]
          Length = 1307

 Score =  651 bits (1680), Expect = 0.0
 Identities = 355/798 (44%), Positives = 512/798 (64%), Gaps = 25/798 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + E    L +  ++QL+M         AIVKAP   I  WTGKQL S+L+P D  + FP 
Sbjct: 349  ILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEYVFPS 408

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  D+++ +LV++ G  TLD+L++AQ +L EW+SMRG S
Sbjct: 409  NGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEWLSMRGLS 468

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLI--NRTCMENLLRDSEDTHNC 1991
            VSLSD+Y+S++S SR NM++EV  GL EA +    +  +I  N+  +   L +S+++   
Sbjct: 469  VSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSMGF 528

Query: 1990 ETFEVDDIDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLV 1811
            +   +  +  +   L++ +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV
Sbjct: 529  DFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLV 588

Query: 1810 HQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSF 1664
              ++CLGLQ S  P+SFR+P  LSC   N           H+  + PGS+I  AV+++SF
Sbjct: 589  QHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSF 648

Query: 1663 LSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQ 1484
            L+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQ
Sbjct: 649  LAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQ 708

Query: 1483 FSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXX 1304
            FSY  ++++ ST  +++ +     +   GG PVGSLAAC+ISEAAY ALD+P        
Sbjct: 709  FSYYEAEQIAST--KVTGEALESHNHAIGGHPVGSLAACAISEAAYCALDQPVSALESSP 766

Query: 1303 XXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTA 1124
                              +  ++FLSK+L R  +G EYGA+EVK HLE++L SEV+S   
Sbjct: 767  LLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVM 826

Query: 1123 IVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMH 947
            I FS E  + TH  PW+CHFHI KE ++ + L + S+  AL     +  +K   +LP +H
Sbjct: 827  ICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGNDLPNLH 886

Query: 946  LDSRSHCSMA--GPETSCIVGTVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEK 782
            +  +  CS+A    E S I  TV + E   +P   L  +RDV++PFLL TVIKGF   +K
Sbjct: 887  ITCKD-CSVAEVQKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKK 945

Query: 781  VDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPN 608
            VDI+W +LP  S++S   +GEL L+V M+     +KFW+ + ++CL I DLIDWERSYP+
Sbjct: 946  VDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPD 1005

Query: 607  SINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLI 428
             ++D++ AYGI+ AW +F   L S  S+ GK IL EHL+L AD L+ TGEF+ L+AKGL 
Sbjct: 1006 DVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLT 1065

Query: 427  TQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEII 257
             Q       SPF QACF+ P  +FV+AAK    DDL G+L+++AWGK   IGTG +F+I+
Sbjct: 1066 LQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIM 1125

Query: 256  YSQKDYQV-DKLDIFNTL 206
            YS K Y++ ++++++  L
Sbjct: 1126 YSGKGYELAEQINVYTLL 1143


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Solanum lycopersicum] gi|723724576|ref|XP_010325435.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Solanum lycopersicum]
          Length = 1446

 Score =  651 bits (1680), Expect = 0.0
 Identities = 355/798 (44%), Positives = 512/798 (64%), Gaps = 25/798 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + E    L +  ++QL+M         AIVKAP   I  WTGKQL S+L+P D  + FP 
Sbjct: 488  ILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEYVFPS 547

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  D+++ +LV++ G  TLD+L++AQ +L EW+SMRG S
Sbjct: 548  NGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEWLSMRGLS 607

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLI--NRTCMENLLRDSEDTHNC 1991
            VSLSD+Y+S++S SR NM++EV  GL EA +    +  +I  N+  +   L +S+++   
Sbjct: 608  VSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSMGF 667

Query: 1990 ETFEVDDIDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLV 1811
            +   +  +  +   L++ +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV
Sbjct: 668  DFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLV 727

Query: 1810 HQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSF 1664
              ++CLGLQ S  P+SFR+P  LSC   N           H+  + PGS+I  AV+++SF
Sbjct: 728  QHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSF 787

Query: 1663 LSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQ 1484
            L+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQ
Sbjct: 788  LAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQ 847

Query: 1483 FSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXX 1304
            FSY  ++++ ST  +++ +     +   GG PVGSLAAC+ISEAAY ALD+P        
Sbjct: 848  FSYYEAEQIAST--KVTGEALESHNHAIGGHPVGSLAACAISEAAYCALDQPVSALESSP 905

Query: 1303 XXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTA 1124
                              +  ++FLSK+L R  +G EYGA+EVK HLE++L SEV+S   
Sbjct: 906  LLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVM 965

Query: 1123 IVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMH 947
            I FS E  + TH  PW+CHFHI KE ++ + L + S+  AL     +  +K   +LP +H
Sbjct: 966  ICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGNDLPNLH 1025

Query: 946  LDSRSHCSMA--GPETSCIVGTVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEK 782
            +  +  CS+A    E S I  TV + E   +P   L  +RDV++PFLL TVIKGF   +K
Sbjct: 1026 ITCKD-CSVAEVQKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKK 1084

Query: 781  VDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPN 608
            VDI+W +LP  S++S   +GEL L+V M+     +KFW+ + ++CL I DLIDWERSYP+
Sbjct: 1085 VDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPD 1144

Query: 607  SINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLI 428
             ++D++ AYGI+ AW +F   L S  S+ GK IL EHL+L AD L+ TGEF+ L+AKGL 
Sbjct: 1145 DVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLT 1204

Query: 427  TQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEII 257
             Q       SPF QACF+ P  +FV+AAK    DDL G+L+++AWGK   IGTG +F+I+
Sbjct: 1205 LQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIM 1264

Query: 256  YSQKDYQV-DKLDIFNTL 206
            YS K Y++ ++++++  L
Sbjct: 1265 YSGKGYELAEQINVYTLL 1282


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  651 bits (1680), Expect = 0.0
 Identities = 355/798 (44%), Positives = 512/798 (64%), Gaps = 25/798 (3%)
 Frame = -1

Query: 2524 VREDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 2345
            + E    L +  ++QL+M         AIVKAP   I  WTGKQL S+L+P D  + FP 
Sbjct: 180  ILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEYVFPS 239

Query: 2344 NGVCXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFS 2165
            NGVC            S+WL+D  D+++ +LV++ G  TLD+L++AQ +L EW+SMRG S
Sbjct: 240  NGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEWLSMRGLS 299

Query: 2164 VSLSDIYLSSNSCSRGNMVEEVSMGLLEATQAFRTKDFLI--NRTCMENLLRDSEDTHNC 1991
            VSLSD+Y+S++S SR NM++EV  GL EA +    +  +I  N+  +   L +S+++   
Sbjct: 300  VSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSMGF 359

Query: 1990 ETFEVDDIDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLV 1811
            +   +  +  +   L++ +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV
Sbjct: 360  DFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLV 419

Query: 1810 HQSLCLGLQHSSAPLSFRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSF 1664
              ++CLGLQ S  P+SFR+P  LSC   N           H+  + PGS+I  AV+++SF
Sbjct: 420  QHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSF 479

Query: 1663 LSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQ 1484
            L+GL+PLEC+VHS++ RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQ
Sbjct: 480  LAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQ 539

Query: 1483 FSYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXX 1304
            FSY  ++++ ST  +++ +     +   GG PVGSLAAC+ISEAAY ALD+P        
Sbjct: 540  FSYYEAEQIAST--KVTGEALESHNHAIGGHPVGSLAACAISEAAYCALDQPVSALESSP 597

Query: 1303 XXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTA 1124
                              +  ++FLSK+L R  +G EYGA+EVK HLE++L SEV+S   
Sbjct: 598  LLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVM 657

Query: 1123 IVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMH 947
            I FS E  + TH  PW+CHFHI KE ++ + L + S+  AL     +  +K   +LP +H
Sbjct: 658  ICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGNDLPNLH 717

Query: 946  LDSRSHCSMA--GPETSCIVGTVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEK 782
            +  +  CS+A    E S I  TV + E   +P   L  +RDV++PFLL TVIKGF   +K
Sbjct: 718  ITCKD-CSVAEVQKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKK 776

Query: 781  VDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPN 608
            VDI+W +LP  S++S   +GEL L+V M+     +KFW+ + ++CL I DLIDWERSYP+
Sbjct: 777  VDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPD 836

Query: 607  SINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLI 428
             ++D++ AYGI+ AW +F   L S  S+ GK IL EHL+L AD L+ TGEF+ L+AKGL 
Sbjct: 837  DVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLT 896

Query: 427  TQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEII 257
             Q       SPF QACF+ P  +FV+AAK    DDL G+L+++AWGK   IGTG +F+I+
Sbjct: 897  LQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIM 956

Query: 256  YSQKDYQV-DKLDIFNTL 206
            YS K Y++ ++++++  L
Sbjct: 957  YSGKGYELAEQINVYTLL 974