BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00063108
         (617 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...    42   4e-06

>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 41.6 bits (96), Expect(3) = 4e-06
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -1

Query: 476  DCYEIFSSVINHISIRVLLVLVWRSDLVDE---VETAFLPGDLVDDIKLS*PVWFEVAG- 309
            D  ++FS V+ H SIR  L +V   DL  E   V+TAFL G+L +DI +  P  F V G 
Sbjct: 897  DYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGK 956

Query: 308  --LVWKFGMSAFG 276
               V K   S +G
Sbjct: 957  EKYVCKLKRSLYG 969



 Score = 30.4 bits (67), Expect(3) = 4e-06
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = -3

Query: 210  VSLIVFGD--MVMEKSKFSFIALRS*VWS-FEMKEFFSAKKILVQKFGRD 70
            + L+++ D  ++  KSK     L+  + S F+MK+  SAKKILV +  RD
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRD 1058



 Score = 24.6 bits (52), Expect(3) = 4e-06
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 615 KVKKTVGCVWVFTFFEG 565
           K KKT+ C W+F   EG
Sbjct: 856 KKKKTISCKWIFKRKEG 872