BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00063059
         (669 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]            90   1e-35
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]    94   2e-35
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    91   4e-35
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    90   4e-35
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc...    94   2e-34
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...    84   4e-34
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]    89   4e-34
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...    87   4e-34
ref|XP_009623363.1| PREDICTED: uncharacterized protein LOC104114...    86   9e-34
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc...    91   7e-33
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    96   1e-32
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    91   1e-32
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      93   2e-32
gb|AAU90262.1| integrase core domain containing protein [Oryza s...    94   2e-32
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...    91   2e-32
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...    75   1e-31
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    90   1e-31
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...    75   2e-31
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]    89   2e-31
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]    88   2e-31

>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score = 90.1 bits (222), Expect(3) = 1e-35
 Identities = 45/92 (48%), Positives = 54/92 (58%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           RY W YPL +KSD    F  F+   EN  N+ +  FQ DG  E T    K  L  CGI  
Sbjct: 546 RYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKIKVFQSDGGGEFTSNLMKKHLTDCGIQH 605

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTLAFSS 288
           RISCP+T  QNG+AERKHRH  E+G ++ F S
Sbjct: 606 RISCPYTPQQNGIAERKHRHFVELGLSMMFHS 637



 Score = 77.0 bits (188), Expect(3) = 1e-35
 Identities = 35/84 (41%), Positives = 49/84 (58%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + ++F +  P   W ++F   +FL N  PS  L   SP E L    P+Y++LRVFG ACY
Sbjct: 631 LSMMFHSHTPLQFWVEAFFTASFLSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACY 690

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYS 56
           P L      K  P+S++CVFLGY+
Sbjct: 691 PCLRPLGEHKFEPRSLQCVFLGYN 714



 Score = 31.2 bits (69), Expect(3) = 1e-35
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 637 VHCDLWGPSPV 605
           +HCDLWGPSPV
Sbjct: 518 IHCDLWGPSPV 528


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score = 94.0 bits (232), Expect(3) = 2e-35
 Identities = 43/90 (47%), Positives = 58/90 (64%)
 Frame = -3

Query: 325 TLLRWAIPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRV 146
           T++   + LL  ASLP   W +SF    +L NR P+ +LH+  P EVLF ++PDYS L+V
Sbjct: 688 TIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKV 747

Query: 145 FGCACYPNLSA*RSDKLSPKSIRCVFLGYS 56
           FGC+C+PNL    + KL  +S  C FLGYS
Sbjct: 748 FGCSCFPNLRPYNTHKLQYRSEECTFLGYS 777



 Score = 72.8 bits (177), Expect(3) = 2e-35
 Identities = 41/88 (46%), Positives = 53/88 (60%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           R+ WI+ L +KS++ K F +FKT  E   +  + S Q D   E     F+ +L   GI  
Sbjct: 611 RFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIKSLQTDWGGEFRA--FQSYLAENGIVH 668

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
           R+SCPHTQ QNG+AERKHR I E G TL
Sbjct: 669 RVSCPHTQQQNGVAERKHRTIVEHGLTL 696



 Score = 30.8 bits (68), Expect(3) = 2e-35
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 655 TSPLQLVHCDLWGPSPV 605
           T PL+L+H DLWGP+ V
Sbjct: 577 TKPLELIHLDLWGPTLV 593


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score = 90.5 bits (223), Expect(4) = 4e-35
 Identities = 42/86 (48%), Positives = 58/86 (67%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  +S+P   W ++F    +LINRTP+KLL + +P E LF+  PDYS LRVFGCAC+
Sbjct: 628 LTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACW 687

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYSPI 50
           P+L    + KL  +S +C FLGYS +
Sbjct: 688 PHLRPYNTHKLQFRSKQCTFLGYSTL 713



 Score = 74.7 bits (182), Expect(4) = 4e-35
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ W+Y +  KS+  + F  F+   E L N  +++ Q D   E  K H   F    GIT 
Sbjct: 545 KFTWLYLIKHKSEVIQKFHEFQALVERLFNRKIIAMQSDWGGEYEKLHS--FFTKIGITH 602

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNT-LAFSSI 285
            +SCPHT  QNG AERKHRHI E+G T LA+SS+
Sbjct: 603 HVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSM 636



 Score = 26.9 bits (58), Expect(4) = 4e-35
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPS 611
           +S+ PL+L++ D+WGP+
Sbjct: 510 MSSHPLELIYSDVWGPA 526



 Score = 24.3 bits (51), Expect(4) = 4e-35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 60  TVLYRGYKWFDPTTKKTFIS 1
           + L++G+K  DP+T + +IS
Sbjct: 711 STLHKGFKCLDPSTGRVYIS 730


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score = 90.1 bits (222), Expect(4) = 4e-35
 Identities = 43/86 (50%), Positives = 55/86 (63%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  +S+P   W ++FL   +LINRTPS++LH  SP E L    PDY+ LRVFGCAC+
Sbjct: 626 LALLAYSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACW 685

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYSPI 50
           PNL      KL  +S  C FLGYS +
Sbjct: 686 PNLRPYNKHKLQFRSTTCTFLGYSTL 711



 Score = 74.7 bits (182), Expect(4) = 4e-35
 Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY L  KS+    F  F++  E L N  +V+ Q D   E  K H   F +  GIT 
Sbjct: 543 KFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKIVAMQTDWGGEYQKLHS--FFNKVGITH 600

Query: 383 RISCPHTQDQNGLAERKHRHITEMG-NTLAFSSI 285
            +SCPHT  QNG AERKHRHI E+G   LA+SS+
Sbjct: 601 HVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSM 634



 Score = 27.3 bits (59), Expect(4) = 4e-35
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 658 STSPLQLVHCDLWGPSP 608
           S  PL+LV  D+WGP+P
Sbjct: 509 SKYPLELVFSDVWGPAP 525



 Score = 24.3 bits (51), Expect(4) = 4e-35
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 60  TVLYRGYKWFDPTTKKTFIS 1
           + L++G+K  DP+T + +IS
Sbjct: 709 STLHKGFKCLDPSTGRVYIS 728


>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1016

 Score = 93.6 bits (231), Expect(3) = 2e-34
 Identities = 45/86 (52%), Positives = 57/86 (66%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  AS+P   W ++FL  T+LINR PSK++ Y +P E L D  P+YS LR FGCAC+
Sbjct: 239 LALLAHASVPLKFWDEAFLAATYLINRLPSKVIQYSAPLERLLDQKPNYSALRTFGCACW 298

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYSPI 50
           PNL      KL  +S +CVFLGYS I
Sbjct: 299 PNLRPYNKRKLEFRSKQCVFLGYSNI 324



 Score = 68.6 bits (166), Expect(3) = 2e-34
 Identities = 37/88 (42%), Positives = 48/88 (54%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY L +KS+    F  F+   E L N  ++S Q D   E  K H   F    GI+ 
Sbjct: 156 KFTWIYLLKNKSEVFSKFHEFQQRVERLFNRKIISMQTDWGGEYEKLHS--FFTKIGISH 213

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
            +SCP+   QNG AERKHRHI E+G  L
Sbjct: 214 HVSCPYAHQQNGSAERKHRHIVEVGLAL 241



 Score = 31.6 bits (70), Expect(3) = 2e-34
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPSPV 605
           VS+ PL+LV  D+WGP+PV
Sbjct: 121 VSSHPLELVFSDVWGPAPV 139


>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 1429

 Score = 84.3 bits (207), Expect(3) = 4e-34
 Identities = 39/89 (43%), Positives = 55/89 (61%)
 Frame = -3

Query: 322 LLRWAIPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVF 143
           ++   + LL  +SLP H W  +F    ++INR P+   H C P +VLF+ +PDY+ LR F
Sbjct: 679 IVEMGLSLLSHSSLPYHYWDHAFHTAVYIINRLPASHNH-CIPLKVLFNNVPDYNFLRAF 737

Query: 142 GCACYPNLSA*RSDKLSPKSIRCVFLGYS 56
           GCACYP L+   + K   +S  C+FLGYS
Sbjct: 738 GCACYPLLTPYNNPKFQYRSKECIFLGYS 766



 Score = 72.0 bits (175), Expect(3) = 4e-34
 Identities = 39/88 (44%), Positives = 50/88 (56%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           +Y W+Y L  KS++   F+ FK   E  LN+ + + Q D   E     F  +L   GI  
Sbjct: 601 KYIWVYFLHDKSETLTIFKQFKALAELQLNTKIKAIQSDWGGEFRS--FTSYLSQLGIIH 658

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
           RI CPHT  QNG+ ERKHRHI EMG +L
Sbjct: 659 RIICPHTHHQNGVVERKHRHIVEMGLSL 686



 Score = 36.6 bits (83), Expect(3) = 4e-34
 Identities = 12/17 (70%), Positives = 17/17 (100%)
 Frame = -3

Query: 652 SPLQLVHCDLWGPSPVQ 602
           SPL+L++CDLWGP+P+Q
Sbjct: 568 SPLELIYCDLWGPAPMQ 584


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score = 88.6 bits (218), Expect(3) = 4e-34
 Identities = 45/89 (50%), Positives = 55/89 (61%)
 Frame = -3

Query: 322 LLRWAIPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVF 143
           ++   I LL QASLP   W ++F  + +LINR P+ +L   SP EVLF   P YS L+VF
Sbjct: 672 IVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKVF 731

Query: 142 GCACYPNLSA*RSDKLSPKSIRCVFLGYS 56
           GC CYPNL      KL  +SI C FLGYS
Sbjct: 732 GCMCYPNLRPFNHHKLQFRSIPCTFLGYS 760



 Score = 73.9 bits (180), Expect(3) = 4e-34
 Identities = 42/88 (47%), Positives = 52/88 (59%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           R+ WIY L  KS++ + F HFK+  E  L   + + Q D   E     F  +L S GI  
Sbjct: 594 RFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQSDWGGEYRS--FTQYLTSNGIIH 651

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
           RISCP+T +QNGLAERKHRHI E G  L
Sbjct: 652 RISCPYTHEQNGLAERKHRHIVEHGIAL 679



 Score = 30.4 bits (67), Expect(3) = 4e-34
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 655 TSPLQLVHCDLWGPS 611
           T PL+L+H DLWGP+
Sbjct: 560 TKPLELIHTDLWGPA 574


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score = 87.0 bits (214), Expect(2) = 4e-34
 Identities = 43/90 (47%), Positives = 52/90 (57%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           R+ W YPL  KSD    F  F+   EN     + SFQ DG  E     F   L  CGI  
Sbjct: 513 RFTWFYPLRLKSDFFSVFLTFQKMVENQCQQKIASFQCDGGGEFISNQFVSHLAECGIRQ 572

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTLAF 294
            ISCP+T  QNG+AERKHRHITE+G+++ F
Sbjct: 573 LISCPYTPQQNGIAERKHRHITELGSSMMF 602



 Score = 85.5 bits (210), Expect(2) = 4e-34
 Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = -3

Query: 301 LLFQASLPKHMWFDSFLITTFLINRTPSKLLH-YCSPFEVLFDTLPDYSLLRVFGCACYP 125
           ++FQ  +P+ +W ++F  + FL N  PS +L    SP+EVL    P Y+ LRVFGCACYP
Sbjct: 600 MMFQGKVPQFLWVEAFYTSNFLCNLLPSSVLKDQKSPYEVLMGKAPVYTSLRVFGCACYP 659

Query: 124 NLSA*RSDKLSPKSIRCVFLGYS 56
           NL    S+K  PKS+ CVF GY+
Sbjct: 660 NLRPYASNKFDPKSLLCVFTGYN 682


>ref|XP_009623363.1| PREDICTED: uncharacterized protein LOC104114593 [Nicotiana
           tomentosiformis]
          Length = 717

 Score = 85.9 bits (211), Expect(2) = 9e-34
 Identities = 43/90 (47%), Positives = 52/90 (57%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           RY WIYPL  KSD+  CF HFK   EN     + +F+ DG  E     F  FL S  I  
Sbjct: 422 RYTWIYPLRHKSDAISCFTHFKLLVENQFGGSIKTFRSDGEGEYQSSSFISFLRSHNIHH 481

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTLAF 294
           ++SC HT  QNG+AERKH HIT +  T+ F
Sbjct: 482 QLSCAHTPQQNGVAERKHCHITNVARTILF 511



 Score = 85.5 bits (210), Expect(2) = 9e-34
 Identities = 40/82 (48%), Positives = 50/82 (60%)
 Frame = -3

Query: 301 LLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACYPN 122
           +LF A  P  +W ++FL    LINR PS  L   SP+E LF   PDY++L+ FGC CYPN
Sbjct: 509 ILFHAHAPLSLWVEAFLTAVHLINRLPSSSLAKLSPYENLFGVPPDYTILKPFGCLCYPN 568

Query: 121 LSA*RSDKLSPKSIRCVFLGYS 56
           L    S KL   S  C+FLGY+
Sbjct: 569 LRPYHSHKLDSSSSPCIFLGYN 590


>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 807

 Score = 90.5 bits (223), Expect(3) = 7e-33
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  AS+P  +W + F    +LINRTP+K++ + +P E LF  LP+YSLLRVFGCAC+
Sbjct: 591 LALLAHASMPLKLWDEVFYTAAYLINRTPNKVIKFETPLERLFKQLPNYSLLRVFGCACW 650

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYS 56
           PNL    + KL  +S +CVFL YS
Sbjct: 651 PNLRPYNNHKLQFRSKQCVFLDYS 674



 Score = 68.6 bits (166), Expect(3) = 7e-33
 Identities = 36/88 (40%), Positives = 48/88 (54%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ W+Y L  KSD  + F  F+   E LL   +++ Q D   E  K H   F D  GI+ 
Sbjct: 508 KFTWVYSLKHKSDVFQKFHEFQALVERLLGHKIITMQKDWGGEYQKLHS--FFDKIGISH 565

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
            +SCP+   QN  AERKHRHI E+G  L
Sbjct: 566 HVSCPYAHQQNSSAERKHRHIVEVGLAL 593



 Score = 29.6 bits (65), Expect(3) = 7e-33
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPSP 608
           VST PL+LV+ D+WG +P
Sbjct: 473 VSTRPLELVYSDVWGTAP 490


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 95.9 bits (237), Expect(3) = 1e-32
 Identities = 44/84 (52%), Positives = 58/84 (69%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  AS+P   W ++F + T+LINR PS+++H  SP E LF   PDYS LR+FGCAC+
Sbjct: 622 LSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACW 681

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYS 56
           PNL    + KL  +S RCVFLG+S
Sbjct: 682 PNLRPYNNHKLQFRSKRCVFLGFS 705



 Score = 63.2 bits (152), Expect(3) = 1e-32
 Identities = 34/88 (38%), Positives = 45/88 (51%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY +  KS     FQ F+   E   +  +++ Q D   E        F    GI  
Sbjct: 539 KFTWIYLIQHKSQVFDKFQEFQVMVERQFDRKILAMQTDWGGEYQS--LNSFFSKIGIVH 596

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
            +SCPHT  QNG AERKHRHI E+G +L
Sbjct: 597 HVSCPHTHQQNGSAERKHRHIVEIGLSL 624



 Score = 29.3 bits (64), Expect(3) = 1e-32
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPSP 608
           VS  PL+LV  D+WGP+P
Sbjct: 504 VSKHPLELVFSDVWGPAP 521


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score = 90.5 bits (223), Expect(3) = 1e-32
 Identities = 43/86 (50%), Positives = 57/86 (66%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  AS+P   W ++FL  T+LINR PSK++ + +P E LF   PDY  LR FGCAC+
Sbjct: 615 LSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDYKSLRTFGCACW 674

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYSPI 50
           PNL    + KL  +S +CVFLG+S I
Sbjct: 675 PNLRPYNTHKLQFRSKQCVFLGFSNI 700



 Score = 66.6 bits (161), Expect(3) = 1e-32
 Identities = 36/88 (40%), Positives = 49/88 (55%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY L  KS+  + F  F+   E   +  ++S Q D   E  K H   F +  GI+ 
Sbjct: 532 KFVWIYFLKHKSEVFQKFHEFQKLVERQFDRKILSMQTDWGGEYLKLH--TFFNEIGISH 589

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
            +SCPHT  QNG  ERKHRHI E+G +L
Sbjct: 590 HVSCPHTHQQNGAVERKHRHIVEVGLSL 617



 Score = 30.8 bits (68), Expect(3) = 1e-32
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPS 611
           VS +PL+L+H D+WGP+
Sbjct: 497 VSNNPLELIHSDVWGPA 513


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 93.2 bits (230), Expect(3) = 2e-32
 Identities = 44/84 (52%), Positives = 58/84 (69%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  AS+P   W ++F+  T+LINRTPSK++ Y +P E LF   P Y+ LRVFGCAC+
Sbjct: 619 LSLLAHASMPLKFWDEAFIAATYLINRTPSKVIQYETPLEHLFHQKPSYTSLRVFGCACW 678

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYS 56
           PNL    + KL  +S +CVFLGYS
Sbjct: 679 PNLRPYNARKLQFRSKQCVFLGYS 702



 Score = 66.6 bits (161), Expect(3) = 2e-32
 Identities = 36/88 (40%), Positives = 48/88 (54%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY L  KS+    F  F+   E +    +++ Q D   E  K H   F    GI+ 
Sbjct: 536 KFTWIYLLKQKSEVFHKFHEFQQLVERIFYRKIIAMQTDWGGEYEKLHD--FFTKIGISH 593

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
            +SCPHT  QNG AERKHRHI E+G +L
Sbjct: 594 HVSCPHTHQQNGSAERKHRHIVEVGLSL 621



 Score = 27.7 bits (60), Expect(3) = 2e-32
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 658 STSPLQLVHCDLWGPSP 608
           S  PL+LV  D+WGP+P
Sbjct: 502 SNFPLELVFSDVWGPAP 518


>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
           Group] gi|108710062|gb|ABF97857.1| retrotransposon
           protein, putative, Ty1-copia subclass, expressed [Oryza
           sativa Japonica Group]
          Length = 1021

 Score = 94.4 bits (233), Expect(3) = 2e-32
 Identities = 45/86 (52%), Positives = 59/86 (68%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  AS+P   W ++FL  T+LINRTPSK++ Y +P E L +  P+YS LR FGCAC+
Sbjct: 543 LSLLAHASMPLKFWDEAFLTATYLINRTPSKVIQYSTPLERLLNQKPNYSSLRTFGCACW 602

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYSPI 50
           PNL    + KL  +S +CVFLGYS I
Sbjct: 603 PNLRPYNNRKLQFRSKQCVFLGYSNI 628



 Score = 65.5 bits (158), Expect(3) = 2e-32
 Identities = 35/88 (39%), Positives = 47/88 (53%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY L  KS+  + F  F+   E L N  +++ Q D   E  K          GIT 
Sbjct: 460 KFTWIYLLKKKSEVLQKFSEFQQLVERLFNRKIIAMQSDWGGEYEK--LNAIFTKIGITH 517

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
            +SCP+   QNG AERKHRHI E+G +L
Sbjct: 518 HVSCPYAHQQNGSAERKHRHIVEVGLSL 545



 Score = 27.7 bits (60), Expect(3) = 2e-32
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPSP 608
           V + PL+LV  D+WGP+P
Sbjct: 425 VFSHPLELVFSDVWGPAP 442


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1256

 Score = 90.9 bits (224), Expect(3) = 2e-32
 Identities = 43/86 (50%), Positives = 55/86 (63%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  ASLP   W +++    +LINR P+K+L Y SP E LF   PDY  LR FGCAC+
Sbjct: 457 LSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACW 516

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYSPI 50
           P+L    S K+  +S RC FLGYSP+
Sbjct: 517 PDLRPYNSHKMHFRSKRCTFLGYSPL 542



 Score = 75.1 bits (183), Expect(3) = 2e-32
 Identities = 40/88 (45%), Positives = 51/88 (57%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           R+ WIY L  KS+  + FQ F+   E + N  ++S Q D   E  K     F +  GIT 
Sbjct: 374 RFTWIYFLKYKSEVFQKFQEFQCLVERMFNRKIISMQTDWGGEYQK--LNTFFNKIGITH 431

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
            +SCPHT  QNG AERKHRHI E+G +L
Sbjct: 432 HVSCPHTHQQNGSAERKHRHIVEVGLSL 459



 Score = 21.2 bits (43), Expect(3) = 2e-32
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 628 DLWGPSPV 605
           D+WGP+PV
Sbjct: 350 DVWGPAPV 357


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 1417

 Score = 75.5 bits (184), Expect(3) = 1e-31
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
 Frame = -3

Query: 322 LLRWAIPLLFQASLPKHMWFDSFLITTFLINRTPSKLLH-YCSPFEVLFDTLPDYSLLRV 146
           ++   + LL  A LP   W  SF    +LINR PS  +  + SP+  L  + PDYS ++V
Sbjct: 664 IVEMGLTLLSHADLPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKV 723

Query: 145 FGCACYPNLSA*RSDKLSPKSIRCVFLGYSP 53
           FGC C+P+L    + KL  KS  CV+LG SP
Sbjct: 724 FGCLCFPHLRPYNNHKLQYKSSPCVYLGVSP 754



 Score = 74.3 bits (181), Expect(3) = 1e-31
 Identities = 39/88 (44%), Positives = 50/88 (56%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY L +KSD+ K F  FK   +N   + + + Q D   E     F   L+  GI  
Sbjct: 586 KFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAIQSDWGGEFRA--FTALLNELGIQH 643

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
           R++CPHT  QNG  ERKHRHI EMG TL
Sbjct: 644 RLTCPHTSHQNGTVERKHRHIVEMGLTL 671



 Score = 35.0 bits (79), Expect(3) = 1e-31
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPSP 608
           V T P +++HCDLWGP+P
Sbjct: 550 VYTKPFEVIHCDLWGPAP 567


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 89.7 bits (221), Expect(3) = 1e-31
 Identities = 43/84 (51%), Positives = 54/84 (64%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL Q+S+P   W  +FL   +LINRTPSK + + +P   L    PDYS LR+FGCAC+
Sbjct: 628 LALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACW 687

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYS 56
           PNL      KL  +S RCVFLGYS
Sbjct: 688 PNLRPYNQHKLQFRSTRCVFLGYS 711



 Score = 73.2 bits (178), Expect(3) = 1e-31
 Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYD--GALELTKGHFKLFLDSCGI 390
           ++ WIY L  KSD  K F  F+   E +    +++FQ D  G  E    HFK    + GI
Sbjct: 545 KFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFK----TIGI 600

Query: 389 TLRISCPHTQDQNGLAERKHRHITEMGNTLAFSS 288
             ++SCPHT  QNG AERKHRHI E+G  L   S
Sbjct: 601 HHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQS 634



 Score = 21.6 bits (44), Expect(3) = 1e-31
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 658 STSPLQLVHCDLWGPS 611
           S++PL L+  D++GP+
Sbjct: 511 SSAPLMLIFSDVFGPA 526


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 1417

 Score = 74.7 bits (182), Expect(3) = 2e-31
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = -3

Query: 322 LLRWAIPLLFQASLPKHMWFDSFLITTFLINRTPSKLLH-YCSPFEVLFDTLPDYSLLRV 146
           ++   + LL  A+LP   W  SF    +LINR PS  +  + SP+  L  + PDYS ++V
Sbjct: 664 IVEMGLTLLSHAALPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKV 723

Query: 145 FGCACYPNLSA*RSDKLSPKSIRCVFLGYSP 53
           FGC C+P+L    + KL  +S  CV+LG SP
Sbjct: 724 FGCLCFPHLRPYNNHKLQYRSSPCVYLGVSP 754



 Score = 74.3 bits (181), Expect(3) = 2e-31
 Identities = 39/88 (44%), Positives = 50/88 (56%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           ++ WIY L +KSD+ K F  FK   +N   + + + Q D   E     F   L+  GI  
Sbjct: 586 KFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAIQSDWGGEFRA--FTALLNELGIQH 643

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
           R++CPHT  QNG  ERKHRHI EMG TL
Sbjct: 644 RLTCPHTSHQNGTVERKHRHIVEMGLTL 671



 Score = 35.0 bits (79), Expect(3) = 2e-31
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 661 VSTSPLQLVHCDLWGPSP 608
           V T P +++HCDLWGP+P
Sbjct: 550 VYTKPFEVIHCDLWGPAP 567


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score = 88.6 bits (218), Expect(3) = 2e-31
 Identities = 43/84 (51%), Positives = 53/84 (63%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  ASLP   W  +F   TFLINR PSK+L Y SP+  LF   PDY   RVFGC CY
Sbjct: 660 LALLSHASLPMKYWHYAFQTXTFLINRMPSKVLEYDSPYFTLFRRHPDYKSFRVFGCLCY 719

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYS 56
           P +    + KL  +S++C+FLGYS
Sbjct: 720 PFIRPYNTHKLQYRSVQCLFLGYS 743



 Score = 66.2 bits (160), Expect(3) = 2e-31
 Identities = 35/88 (39%), Positives = 44/88 (50%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           RY W Y L +K  +   F+ FK   EN  ++ +   Q D   E     F  FL + GI  
Sbjct: 577 RYTWFYSLQTKDQALPIFKXFKLQMENQFDTKIKCLQSDNGGEFRS--FTSFLQAVGIAH 634

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
           R SCP+   QNG  ERKHRH+ E G  L
Sbjct: 635 RFSCPYNSXQNGRVERKHRHVVETGLAL 662



 Score = 28.9 bits (63), Expect(3) = 2e-31
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 658 STSPLQLVHCDLWGPSPVQCLDITSFPLLTIAD 560
           ++ PL+LV+ D+WGP+ ++      + +L + D
Sbjct: 542 ASKPLELVYTDIWGPASIKSTSGARYFILFVDD 574


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score = 88.2 bits (217), Expect(3) = 2e-31
 Identities = 43/84 (51%), Positives = 52/84 (61%)
 Frame = -3

Query: 307 IPLLFQASLPKHMWFDSFLITTFLINRTPSKLLHYCSPFEVLFDTLPDYSLLRVFGCACY 128
           + LL  A LP   W  +F   TFLINR PSK+L   SP+  LF   PDY  LRVFGC CY
Sbjct: 655 LALLAHAGLPLKFWSYAFQTATFLINRMPSKVLXNASPYFALFKRNPDYKFLRVFGCLCY 714

Query: 127 PNLSA*RSDKLSPKSIRCVFLGYS 56
           P +    + KL  +S++CVFLGYS
Sbjct: 715 PFIRPYNNHKLQYRSLKCVFLGYS 738



 Score = 66.6 bits (161), Expect(3) = 2e-31
 Identities = 36/88 (40%), Positives = 43/88 (48%)
 Frame = -2

Query: 563 RYHWIYPLTSKSDS*KCFQHFKTSNENLLNSIVVSFQYDGALELTKGHFKLFLDSCGITL 384
           RY W+Y L SK  +   F+ FK   EN   + +   Q D   E     F  FL   GI  
Sbjct: 572 RYTWLYLLQSKDQALPIFKXFKLQVENQFEAKIKCLQXDNGGEFRS--FMSFLQESGILH 629

Query: 383 RISCPHTQDQNGLAERKHRHITEMGNTL 300
           R SCP+   QNG  ERKHRH+ E G  L
Sbjct: 630 RFSCPYNSSQNGRVERKHRHVVETGLAL 657



 Score = 28.9 bits (63), Expect(3) = 2e-31
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 658 STSPLQLVHCDLWGPSPVQCLDITSFPLLTIAD 560
           ++ PL+LV+ D+WGP+ V       + +L + D
Sbjct: 537 ASKPLELVYTDIWGPASVTSTSGAKYFILFVDD 569