BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00056856
         (679 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008365969.1| PREDICTED: uncharacterized protein LOC103429...    99   1e-31
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    97   3e-31
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    97   3e-31
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    97   3e-31
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    99   3e-31
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  100   3e-31
gb|AAB82754.1| retrofit [Oryza longistaminata]                         99   7e-31
ref|XP_008240661.1| PREDICTED: uncharacterized protein LOC103339...    98   1e-30
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   100   2e-30
gb|AAU90288.2| Polyprotein, putative [Solanum demissum]                94   2e-30
emb|CAN68711.1| hypothetical protein VITISV_015847 [Vitis vinifera]    79   3e-30
ref|XP_008646486.1| PREDICTED: uncharacterized protein LOC103627...   108   4e-30
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...   102   8e-30
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...    99   8e-30
gb|AAL31076.1|AC091749_5 putaive copia-like retrotransposon poly...   102   8e-30
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...    99   1e-29
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...    99   1e-29
ref|XP_009359358.1| PREDICTED: uncharacterized protein LOC103949...    92   1e-29
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                   97   1e-29
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   102   2e-29

>ref|XP_008365969.1| PREDICTED: uncharacterized protein LOC103429605 [Malus domestica]
          Length = 1188

 Score = 99.0 bits (245), Expect(3) = 1e-31
 Identities = 54/120 (45%), Positives = 74/120 (61%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F+Q   VD+TE FS VVK ST+R +L++A+S+   V+QLDV N FLH +L E VYM  PS
Sbjct: 733  FHQKAGVDYTETFSPVVKHSTIRLVLSLAVSKKWXVRQLDVQNAFLHGYLHEHVYMXQPS 792

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSSLNMIIPFSLTNQQMVYV 145
            G+      ++VC L+RSLYG KQAPR  F+  + F   L F          + N++ VY+
Sbjct: 793  GFIDKQFPHHVCKLQRSLYGLKQAPRAWFQRFSDFLFQLGFDESTCXYSLFVFNKRGVYI 852



 Score = 61.2 bits (147), Expect(3) = 1e-31
 Identities = 28/48 (58%), Positives = 32/48 (66%)
 Frame = -1

Query: 634 GAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKGLL*SAG 491
           G W +VPY    N L  KWVFK+K  ADG+I+RHKARLVA G    AG
Sbjct: 691 GTWSLVPYSSQMNVLPNKWVFKIKRRADGTIERHKARLVANGFHQKAG 738



 Score = 24.6 bits (52), Expect(3) = 1e-31
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 50  KNLGNLYYFLGIEV 9
           K+LG L YFLGIEV
Sbjct: 885 KDLGPLSYFLGIEV 898


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 97.4 bits (241), Expect(3) = 3e-31
 Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL++A+S+G  ++QLDV N FLH +L E VYM  P 
Sbjct: 736  FKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPP 795

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF------SSLNMIIPFSLTN 163
            G+E P K ++VC L ++LYG KQAPR  F  L+     L F      +SL  +    +T 
Sbjct: 796  GFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITM 855

Query: 162  QQMVYV 145
              +VYV
Sbjct: 856  FVLVYV 861



 Score = 58.5 bits (140), Expect(3) = 3e-31
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           ++N  W +VP  + RN +G KWV+K+K  ADG++ R+KARLVAKG
Sbjct: 691 VKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKG 735



 Score = 27.3 bits (59), Expect(3) = 3e-31
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 50  KNLGNLYYFLGIEVCR 3
           K+LG L+YFLGIEV +
Sbjct: 888 KDLGELHYFLGIEVSK 903


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score = 97.4 bits (241), Expect(3) = 3e-31
 Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL++A+S+G  ++QLDV N FLH +L E VYM  P 
Sbjct: 1007 FKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPP 1066

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF------SSLNMIIPFSLTN 163
            G+E P K ++VC L ++LYG KQAPR  F  L+     L F      +SL  +    +T 
Sbjct: 1067 GFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITM 1126

Query: 162  QQMVYV 145
              +VYV
Sbjct: 1127 FVLVYV 1132



 Score = 58.5 bits (140), Expect(3) = 3e-31
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            ++N  W +VP  + RN +G KWV+K+K  ADG++ R+KARLVAKG
Sbjct: 962  VKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKG 1006



 Score = 27.3 bits (59), Expect(3) = 3e-31
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 50   KNLGNLYYFLGIEVCR 3
            K+LG L+YFLGIEV +
Sbjct: 1159 KDLGELHYFLGIEVSK 1174


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score = 97.4 bits (241), Expect(3) = 3e-31
 Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL++A+S+G  ++QLDV N FLH +L E VYM  P 
Sbjct: 1014 FKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPP 1073

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF------SSLNMIIPFSLTN 163
            G+E P K ++VC L ++LYG KQAPR  F  L+     L F      +SL  +    +T 
Sbjct: 1074 GFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITM 1133

Query: 162  QQMVYV 145
              +VYV
Sbjct: 1134 FVLVYV 1139



 Score = 58.5 bits (140), Expect(3) = 3e-31
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            ++N  W +VP  + RN +G KWV+K+K  ADG++ R+KARLVAKG
Sbjct: 969  VKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKG 1013



 Score = 27.3 bits (59), Expect(3) = 3e-31
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 50   KNLGNLYYFLGIEVCR 3
            K+LG L+YFLGIEV +
Sbjct: 1166 KDLGELHYFLGIEVSK 1181


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score = 99.4 bits (246), Expect(3) = 3e-31
 Identities = 58/126 (46%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL+IA+SRG  ++QLDV N FLH  L E VYM+ P 
Sbjct: 992  FKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPP 1051

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF------SSLNMIIPFSLTN 163
            GYE P   +YVC L ++LYG KQAPR  +  L+     L F      +SL      SLT 
Sbjct: 1052 GYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTI 1111

Query: 162  QQMVYV 145
              ++YV
Sbjct: 1112 FLLIYV 1117



 Score = 56.2 bits (134), Expect(3) = 3e-31
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            I+N  W +VP  + RN +  KWV+K+K   DGS+ R+KARLVAKG
Sbjct: 947  IKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKG 991



 Score = 27.7 bits (60), Expect(3) = 3e-31
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = -3

Query: 50   KNLGNLYYFLGIEVCR 3
            K+LG+L+YFLGIEV +
Sbjct: 1144 KDLGDLHYFLGIEVTK 1159


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score = 99.8 bits (247), Expect(2) = 3e-31
 Identities = 52/103 (50%), Positives = 67/103 (65%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL+IA+SRG  ++QLDV N FLH  L E VYMQ P 
Sbjct: 997  FKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPP 1056

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSS 196
            G+E   K NYVC L ++LYG KQAPR  +  L+     L F +
Sbjct: 1057 GFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEA 1099



 Score = 63.2 bits (152), Expect(2) = 3e-31
 Identities = 26/45 (57%), Positives = 35/45 (77%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            I+N  W +VPY K +N +G KWV+K+K  ADG++ R+KARLVAKG
Sbjct: 952  IKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKG 996


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score = 99.0 bits (245), Expect(2) = 7e-31
 Identities = 51/103 (49%), Positives = 67/103 (65%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL+IA+SRG  ++QLDV N FLH  L E VYMQ P 
Sbjct: 1006 FKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPP 1065

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSS 196
            G+E   K +YVC L ++LYG KQAPR  +  L+     L F +
Sbjct: 1066 GFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEA 1108



 Score = 62.8 bits (151), Expect(2) = 7e-31
 Identities = 26/45 (57%), Positives = 35/45 (77%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            I+N  W +VPY K +N +G KWV+K+K  ADG++ R+KARLVAKG
Sbjct: 961  IKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKG 1005


>ref|XP_008240661.1| PREDICTED: uncharacterized protein LOC103339149 [Prunus mume]
          Length = 934

 Score = 97.8 bits (242), Expect(3) = 1e-30
 Identities = 51/120 (42%), Positives = 73/120 (60%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F+Q   +D+TE FS VVK ST+R +L++A+S+   ++QLDV N FLH  L E VYM+ P+
Sbjct: 645  FHQKPGIDYTETFSPVVKHSTIRLVLSLAVSKRWPIRQLDVQNAFLHGFLNEDVYMRQPA 704

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSSLNMIIPFSLTNQQMVYV 145
            G+      NYVC L+RS+YG KQAPR  F   + F   L F +        + N + +Y+
Sbjct: 705  GFVDQQYPNYVCKLQRSIYGLKQAPRAWFHRFSEFLLQLGFEASTCDYSLFVYNHRGIYL 764



 Score = 57.8 bits (138), Expect(3) = 1e-30
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = -1

Query: 634 GAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           G W +VPY    N L  KWVFKLK  ADGSI+R+KARLVA G
Sbjct: 603 GTWKLVPYHPQMNLLPNKWVFKLKQRADGSIERYKARLVANG 644



 Score = 25.8 bits (55), Expect(3) = 1e-30
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 50  KNLGNLYYFLGIEV 9
           K+LG L+YFLG+EV
Sbjct: 797 KDLGPLHYFLGVEV 810


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  100 bits (248), Expect(2) = 2e-30
 Identities = 51/103 (49%), Positives = 68/103 (66%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL+IA+SRG  ++QLDV N FLH  L E VYMQ P 
Sbjct: 1009 FKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPP 1068

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSS 196
            G+E   K +YVC L ++LYG KQAPR  +  L+   + L F +
Sbjct: 1069 GFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEA 1111



 Score = 60.5 bits (145), Expect(2) = 2e-30
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            I+N  W +VPY K +N +G KWV+K+K  ADG++ R+K RL+AKG
Sbjct: 964  IKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKG 1008


>gb|AAU90288.2| Polyprotein, putative [Solanum demissum]
          Length = 1017

 Score = 93.6 bits (231), Expect(2) = 2e-30
 Identities = 50/101 (49%), Positives = 66/101 (65%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            ++Q   +DF + FS VVK +T+R +L++A+S    V QLD+SN FLH  L EIVYM  P 
Sbjct: 705  YHQRPGLDFADTFSPVVKPATIRLLLSLAVSHQWHVTQLDISNAFLHGKLDEIVYMSQPP 764

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF 202
            G+  P + ++VC LKRSLYG KQAPR+  K LA     L F
Sbjct: 765  GFVDPTRPDHVCLLKRSLYGLKQAPRMWNKCLADVLLSLGF 805



 Score = 67.0 bits (162), Expect(2) = 2e-30
 Identities = 29/45 (64%), Positives = 36/45 (80%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           IQNG W++VP   S+N +G KWVFK KL +DGS+ R+KARLVAKG
Sbjct: 660 IQNGTWELVPLSPSQNIIGCKWVFKRKLKSDGSLDRYKARLVAKG 704


>emb|CAN68711.1| hypothetical protein VITISV_015847 [Vitis vinifera]
          Length = 1168

 Score = 78.6 bits (192), Expect(3) = 3e-30
 Identities = 42/89 (47%), Positives = 57/89 (64%)
 Frame = -2

Query: 504 FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
           F Q   +D+ E F+ V + S+VR +L +A +R   + Q+DV N FL+  L+E VYMQ P 
Sbjct: 731 FTQEYGIDYEETFAPVARISSVRALLAVAAARQWDLFQMDVKNAFLNGDLSEAVYMQPPP 790

Query: 324 GYEVPGKENYVCHLKRSLYG*KQAPRVGF 238
           G  V  + N VCHL+R+LYG KQAPR  F
Sbjct: 791 GLFV--ESNKVCHLRRALYGLKQAPRAWF 817



 Score = 57.4 bits (137), Expect(3) = 3e-30
 Identities = 22/44 (50%), Positives = 34/44 (77%)
 Frame = -1

Query: 640 QNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           +N  WD+VP    ++ +G KW++K+K  +DGS++R+KARLVAKG
Sbjct: 687 KNHTWDLVPLPPGQSVVGCKWIYKIKTRSDGSVERYKARLVAKG 730



 Score = 43.9 bits (102), Expect(3) = 3e-30
 Identities = 25/85 (29%), Positives = 43/85 (50%)
 Frame = -1

Query: 265  IETSTEGWFQRFSTFLFRFGFQQSKYDHSLFINKSADGICLIWCMEMTLIRTGXXXXXXX 86
            ++ +   WF +FS+ +FR G+  S YD +LF+ ++  G  L+      +I TG       
Sbjct: 809  LKQAPRAWFAKFSSTIFRLGYTASPYDSALFLRRTDKGTILLLLYVDDMIITGNDLRGIQ 868

Query: 85   XLITYLASEFCTKI*GIFTTFLELK 11
             L  +L+ +F  K  G  + FL L+
Sbjct: 869  ELKDFLSQQFEMKDLGHLSYFLGLE 893


>ref|XP_008646486.1| PREDICTED: uncharacterized protein LOC103627967 [Zea mays]
          Length = 890

 Score =  108 bits (270), Expect(2) = 4e-30
 Identities = 53/101 (52%), Positives = 69/101 (68%)
 Frame = -2

Query: 504 FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
           F+Q + VD+ E FS VVK +T+R++L+IA SR   + QLDV NTFLH HL E VY Q P 
Sbjct: 513 FSQREGVDYDETFSPVVKPATIRSVLSIAASRAWPIHQLDVKNTFLHGHLEETVYCQQPP 572

Query: 324 GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF 202
           G+  PG  ++VCHL++SLYG KQAPR  ++  A F   L F
Sbjct: 573 GFVDPGAPDHVCHLQKSLYGLKQAPRAWYQRFATFVRHLGF 613



 Score = 50.4 bits (119), Expect(2) = 4e-30
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           + N  W++VP     N +  KW+F+ K  ADGS+ RHKAR V +G
Sbjct: 468 VDNNTWELVPRPPGANVVTGKWIFRHKFHADGSLARHKARWVVRG 512


>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
            Japonica Group] gi|31431217|gb|AAP53032.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1042

 Score =  102 bits (253), Expect(2) = 8e-30
 Identities = 53/103 (51%), Positives = 69/103 (66%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL+IA+SRG  ++QLDVSN FLH  L E VYM+ P 
Sbjct: 837  FKQRYGIDYEDTFSPVVKAATIRVILSIAVSRGWSLRQLDVSNAFLHGILEEEVYMRQPL 896

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSS 196
            GYEV    N+VC L ++LYG KQAPRV +  L+     L F +
Sbjct: 897  GYEVSSLPNHVCKLDKALYGLKQAPRVWYSRLSTKLQELGFQA 939



 Score = 56.2 bits (134), Expect(2) = 8e-30
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           ++N  W +VP    RN +  KWV+K+K  ADGS+ R+KARLVAKG
Sbjct: 792 MKNKTWHLVPAKSDRNVIDCKWVYKIKRKADGSLDRYKARLVAKG 836


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
           gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
           Japonica Group]
          Length = 821

 Score = 99.4 bits (246), Expect(2) = 8e-30
 Identities = 50/101 (49%), Positives = 66/101 (65%)
 Frame = -2

Query: 504 FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
           F Q   +D+ + FS VVKA+T+R +L++A+SRG  ++QLDV N FLH  L E VYM+ P 
Sbjct: 376 FKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPP 435

Query: 324 GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF 202
           GYE     NYVC L ++LYG KQAPR  +  L+   S L F
Sbjct: 436 GYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGF 476



 Score = 58.9 bits (141), Expect(2) = 8e-30
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           I+N  W +VP  K RN +  KWV+K+K  ADGS+ R+KARLVAKG
Sbjct: 331 IENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKG 375


>gb|AAL31076.1|AC091749_5 putaive copia-like retrotransposon polyprotein, 5'-partial, partial
           [Oryza sativa Japonica Group]
          Length = 491

 Score =  102 bits (253), Expect(2) = 8e-30
 Identities = 53/103 (51%), Positives = 69/103 (66%)
 Frame = -2

Query: 504 FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
           F Q   +D+ + FS VVKA+T+R IL+IA+SRG  ++QLDVSN FLH  L E VYM+ P 
Sbjct: 286 FKQRYGIDYEDTFSPVVKAATIRVILSIAVSRGWSLRQLDVSNAFLHGILEEEVYMRQPL 345

Query: 324 GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSS 196
           GYEV    N+VC L ++LYG KQAPRV +  L+     L F +
Sbjct: 346 GYEVSSLPNHVCKLDKALYGLKQAPRVWYSRLSTKLQELGFQA 388



 Score = 56.2 bits (134), Expect(2) = 8e-30
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           ++N  W +VP    RN +  KWV+K+K  ADGS+ R+KARLVAKG
Sbjct: 241 MKNKTWHLVPAKSDRNVIDCKWVYKIKRKADGSLDRYKARLVAKG 285


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score = 99.0 bits (245), Expect(2) = 1e-29
 Identities = 50/101 (49%), Positives = 66/101 (65%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R +L++A+SRG  ++QLDV N FLH  L E VYM+ P 
Sbjct: 954  FKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPP 1013

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF 202
            GYE     NYVC L ++LYG KQAPR  +  L+   S L F
Sbjct: 1014 GYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGF 1054



 Score = 58.9 bits (141), Expect(2) = 1e-29
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            I+N  W +VP  K RN +  KWV+K+K  ADGS+ R+KARLVAKG
Sbjct: 909  IENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKG 953


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1241

 Score = 99.0 bits (245), Expect(2) = 1e-29
 Identities = 50/101 (49%), Positives = 66/101 (65%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R +L++A+SRG  ++QLDV N FLH  L E VYM+ P 
Sbjct: 900  FKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPP 959

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAF 202
            GYE     NYVC L ++LYG KQAPR  +  L+   S L F
Sbjct: 960  GYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGF 1000



 Score = 58.9 bits (141), Expect(2) = 1e-29
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           I+N  W +VP  K RN +  KWV+K+K  ADGS+ R+KARLVAKG
Sbjct: 855 IENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKG 899


>ref|XP_009359358.1| PREDICTED: uncharacterized protein LOC103949948 [Pyrus x
           bretschneideri]
          Length = 1243

 Score = 92.0 bits (227), Expect(3) = 1e-29
 Identities = 52/120 (43%), Positives = 71/120 (59%)
 Frame = -2

Query: 504 FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
           F+Q   VD+ E FS VVK ST+R +L++A+S    V+QLDV N FLH  L E VYM+ P 
Sbjct: 597 FHQQAGVDYGETFSPVVKHSTIRLVLSLAVSHRWPVRQLDVQNAFLHGFLKEDVYMRQPR 656

Query: 324 GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSSLNMIIPFSLTNQQMVYV 145
           G+      ++VC L+RS+YG KQAPR  F+  + F   L F   +      +  QQ VY+
Sbjct: 657 GFVDQQFPSHVCKLQRSIYGLKQAPRAWFQRFSDFLLELGFQESSCDYSLFVFRQQGVYL 716



 Score = 60.1 bits (144), Expect(3) = 1e-29
 Identities = 28/48 (58%), Positives = 32/48 (66%)
 Frame = -1

Query: 634 GAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKGLL*SAG 491
           G W +VPY    N L  KWVFK+K  ADGS++RHKARLVA G    AG
Sbjct: 555 GTWTLVPYHSKMNLLPNKWVFKVKRRADGSVERHKARLVANGFHQQAG 602



 Score = 25.8 bits (55), Expect(3) = 1e-29
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 50  KNLGNLYYFLGIEV 9
           K+LG L+YFLG+EV
Sbjct: 749 KDLGPLHYFLGVEV 762


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score = 97.1 bits (240), Expect(2) = 1e-29
 Identities = 50/103 (48%), Positives = 67/103 (65%)
 Frame = -2

Query: 504  FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
            F Q   +D+ + FS VVKA+T+R IL+IA+SRG  ++QLDV N FL   L E VYMQ P 
Sbjct: 1009 FKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWNLRQLDVQNDFLRGFLEEEVYMQQPP 1068

Query: 324  GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSS 196
            G+E   K +YVC L ++LYG KQAPR  +  L+   + L F +
Sbjct: 1069 GFESSSKRDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEA 1111



 Score = 60.5 bits (145), Expect(2) = 1e-29
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = -1

Query: 643  IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
            I+N  W +VPY K +N +G KWV+K+K  ADG++ R+K RL+AKG
Sbjct: 964  IKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKG 1008


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 932

 Score =  102 bits (255), Expect(2) = 2e-29
 Identities = 51/103 (49%), Positives = 70/103 (67%)
 Frame = -2

Query: 504 FNQLDDVDFTEAFSLVVKASTVRTILTIALSRGSIVKQLDVSNTFLHAHLAEIVYMQHPS 325
           F Q   +D+ + FSLVVKA+T+R IL+IA+S+G  ++QLDV N FLH +L E VYM+ P 
Sbjct: 495 FKQRYGIDYEDTFSLVVKAATIRLILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQPP 554

Query: 324 GYEVPGKENYVCHLKRSLYG*KQAPRVGFKDLALFCSGLAFSS 196
           G+E  G+ NY+C L ++LYG KQAPR  +  L+     L F S
Sbjct: 555 GFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFIS 597



 Score = 53.9 bits (128), Expect(2) = 2e-29
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = -1

Query: 643 IQNGAWDMVPYGKSRNALGAKWVFKLKLMADGSIKRHKARLVAKG 509
           + N  W +VP  + +N +  KW++K+K  ADGSI R+KARLVAKG
Sbjct: 450 MSNKTWHLVPPTQGKNIIDCKWMYKIKRKADGSIDRYKARLVAKG 494