BLASTX nr result
ID: Papaver29_contig00054733
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver29_contig00054733
(851 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD89878.1| RNA polymerase II, second largest subunit [Doron... 52 2e-10
emb|CAD89597.1| RNA polymerase II, second largest subunit [Senec... 52 3e-10
gb|AFV74904.1| RNA polymerase II second largest subunit, partial... 51 3e-10
gb|AJS14110.1| RNA polymerase II second largest subunit, partial... 51 3e-10
gb|AJS14112.1| RNA polymerase II second largest subunit, partial... 50 5e-10
gb|AAS86820.1| RNA polymerase II second largest subunit, partial... 50 5e-10
gb|AJS14127.1| RNA polymerase II second largest subunit, partial... 49 7e-10
gb|AFV74912.1| RNA polymerase II second largest subunit, partial... 49 7e-10
emb|CAD92460.1| RNA polymerase II [Escallonia sp. Oxelman 2340] 50 7e-10
emb|CAD89691.1| RNA polymerase II, second largest subunit [Escal... 50 7e-10
ref|NP_001234825.1| RNA polymerase II second largest subunit [So... 48 9e-10
gb|AJS14126.1| RNA polymerase II second largest subunit, partial... 49 9e-10
gb|AFV74909.1| RNA polymerase II second largest subunit, partial... 49 9e-10
gb|AAW22921.1| RNA polymerase II second largest subunit, partial... 49 9e-10
gb|AAW22920.1| RNA polymerase II second largest subunit, partial... 49 9e-10
gb|AJS14099.1| RNA polymerase II second largest subunit, partial... 49 9e-10
emb|CAD92664.1| RNA polymerase II [Solanum lycopersicum] 48 9e-10
gb|AAT69132.1| RNA polymerase II, partial [Cuscuta europaea] 49 1e-09
dbj|BAG72391.1| RNA polymerase II second largest subunit [Machil... 50 1e-09
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 49 1e-09
>emb|CAD89878.1| RNA polymerase II, second largest subunit [Doronicum orientale]
Length = 326
Score = 51.6 bits (122), Expect(2) = 2e-10
Identities = 43/110 (39%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Frame = -3
Query: 786 DDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLGLR 607
DDA QG A D+S +RH+E G + + + R +RV
Sbjct: 151 DDAAQGQASRYTRRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV----------- 197
Query: 606 VGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 198 ---RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 244
Score = 42.0 bits (97), Expect(2) = 2e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 246 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNG 304
>emb|CAD89597.1| RNA polymerase II, second largest subunit [Senecio vulgaris]
Length = 325
Score = 51.6 bits (122), Expect(2) = 3e-10
Identities = 43/110 (39%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Frame = -3
Query: 786 DDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLGLR 607
DDA QG A D+S +RH+E G + + + R +RV
Sbjct: 149 DDAAQGQASRYTRRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV----------- 195
Query: 606 VGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 196 ---RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 242
Score = 41.6 bits (96), Expect(2) = 3e-10
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS 371
IP R+TI Q+IE GK A H+GKEG A+PF+
Sbjct: 244 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 275
>gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
alniformosanae]
Length = 569
Score = 50.8 bits (120), Expect(2) = 3e-10
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG +F D+S +RH+E G + + + R +RV
Sbjct: 359 IAQDESQGQSFRYTKRDHSTSLRHSETGIVDQVLLTTN--ADGLRFVKVRV--------- 407
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 408 -----RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 454
Score = 42.0 bits (97), Expect(2) = 3e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 456 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 514
>gb|AJS14110.1| RNA polymerase II second largest subunit, partial [Korthalsella
japonica]
Length = 505
Score = 50.8 bits (120), Expect(2) = 3e-10
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG + HD+S +RH+E G + + + R +RV
Sbjct: 295 IAQDESQGQSSRYTKHDHSTSLRHSETGIVDQVLLTTN--ADGLRFVKVRV--------- 343
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 344 -----RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 390
Score = 42.0 bits (97), Expect(2) = 3e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 392 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 450
>gb|AJS14112.1| RNA polymerase II second largest subunit, partial [Lophophytum
leandrii]
Length = 570
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Frame = -3
Query: 786 DDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLGLR 607
+DA QG A D+S+ +RH+E G + + + R +RV
Sbjct: 362 EDAGQGQAARYTRRDHSSSLRHSETGIIDQVLLTTN--ADGLRFVKVRV----------- 408
Query: 606 VGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 409 ---RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 455
Score = 42.0 bits (97), Expect(2) = 5e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 457 IPSRMTIGQLIECLMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 515
>gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
aralioides]
Length = 547
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A D+S +RH+E G + +VL G
Sbjct: 363 IAQDESQGQASRYTRRDHSTSLRHSESGMVD------------------QVLLTTNAD-G 403
Query: 612 LR---VGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
LR V RSVRI +GDKF RHGQK TV MT ++ + +E IT DIIVNPH
Sbjct: 404 LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPH 458
Score = 42.0 bits (97), Expect(2) = 5e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 460 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 518
>gb|AJS14127.1| RNA polymerase II second largest subunit, partial [Quinchamalium
chilense]
Length = 569
Score = 48.5 bits (114), Expect(2) = 7e-10
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A D+S +RH+E G + + + R +RV
Sbjct: 359 IAQDESQGQATRYTKRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV--------- 407
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK T+ MT ++ + E IT DIIVNPH
Sbjct: 408 -----RSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPH 454
Score = 43.1 bits (100), Expect(2) = 7e-10
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A HVGKEG A+PF+ L+ G+ G +YNG
Sbjct: 456 IPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 514
>gb|AFV74912.1| RNA polymerase II second largest subunit, partial [Schoepfia
jasminodora]
Length = 569
Score = 48.5 bits (114), Expect(2) = 7e-10
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A D+S +RH+E G + + + R +RV
Sbjct: 359 IAQDESQGQATRYTKRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV--------- 407
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK T+ MT ++ + E IT DIIVNPH
Sbjct: 408 -----RSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPH 454
Score = 43.1 bits (100), Expect(2) = 7e-10
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A HVGKEG A+PF+ L+ G+ G +YNG
Sbjct: 456 IPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 514
>emb|CAD92460.1| RNA polymerase II [Escallonia sp. Oxelman 2340]
Length = 543
Score = 49.7 bits (117), Expect(2) = 7e-10
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A + D+S +RH+E G + + + R +RV
Sbjct: 359 IAQDDAQGQASRYSKRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV--------- 407
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + +E IT DIIVNPH
Sbjct: 408 -----RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPH 454
Score = 42.0 bits (97), Expect(2) = 7e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 456 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 514
>emb|CAD89691.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
2340]
Length = 508
Score = 49.7 bits (117), Expect(2) = 7e-10
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A + D+S +RH+E G + + + R +RV
Sbjct: 302 IAQDDAQGQASRYSKRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV--------- 350
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + +E IT DIIVNPH
Sbjct: 351 -----RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPH 397
Score = 42.0 bits (97), Expect(2) = 7e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 399 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 457
>ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second
largest subunit [Solanum lycopersicum]
Length = 1205
Score = 47.8 bits (112), Expect(2) = 9e-10
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Frame = -3
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
+++ RSVRI +GDKF RHGQK T+ MT ++ + +E IT DIIVNPH
Sbjct: 943 VKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPH 994
Score = 43.5 bits (101), Expect(2) = 9e-10
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG* 323
IP R+TI Q++E GK A H+GKEG A+PF+ L++ G+ G +YNG
Sbjct: 996 IPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDSISRTLHNCGYQMRGFERMYNGH 1055
Query: 322 VSEII 308
++
Sbjct: 1056 TGRVL 1060
>gb|AJS14126.1| RNA polymerase II second largest subunit, partial [Ptychopetalum
petiolatum]
Length = 569
Score = 49.3 bits (116), Expect(2) = 9e-10
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A + D+S +RH+E G + + + R +RV
Sbjct: 359 IAQDESQGQATRYSRRDHSTSLRHSETGIVDQVLLTTN--ADGLRFVKVRV--------- 407
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 408 -----RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 454
Score = 42.0 bits (97), Expect(2) = 9e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 456 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 514
>gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
laxiflora]
Length = 569
Score = 49.3 bits (116), Expect(2) = 9e-10
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D +QG A D+S +RH+E G + + + R +RV
Sbjct: 359 ITQDDNQGQASRYTRQDHSTSLRHSETGIVDQVLLTTN--ADGLRFVKVRV--------- 407
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 408 -----RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 454
Score = 42.0 bits (97), Expect(2) = 9e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 456 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 514
>gb|AAW22921.1| RNA polymerase II second largest subunit, partial [Pseudotsuga
menziesii]
Length = 554
Score = 49.3 bits (116), Expect(2) = 9e-10
Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Frame = -3
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
++V RSVRI +GDKF RHGQK TV MT ++ + SE IT DIIVNPH
Sbjct: 396 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTSEGITPDIIVNPH 447
Score = 42.0 bits (97), Expect(2) = 9e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 449 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETMYNG 507
>gb|AAW22920.1| RNA polymerase II second largest subunit, partial [Larix
occidentalis]
Length = 534
Score = 49.3 bits (116), Expect(2) = 9e-10
Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Frame = -3
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
++V RSVRI +GDKF RHGQK TV MT ++ + SE IT DIIVNPH
Sbjct: 394 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTSEGITPDIIVNPH 445
Score = 42.0 bits (97), Expect(2) = 9e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 447 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETMYNG 505
>gb|AJS14099.1| RNA polymerase II second largest subunit, partial [Arjona tuberosa]
Length = 490
Score = 48.5 bits (114), Expect(2) = 9e-10
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A D+S +RH+E G + + + R +RV
Sbjct: 359 IAQDESQGQATRYTKRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV--------- 407
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK T+ MT ++ + E IT DIIVNPH
Sbjct: 408 -----RSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPH 454
Score = 42.7 bits (99), Expect(2) = 9e-10
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS 371
IP R+TI Q+IE GK A HVGKEG A+PF+
Sbjct: 456 IPSRMTIGQLIECIMGKVAAHVGKEGDATPFT 487
>emb|CAD92664.1| RNA polymerase II [Solanum lycopersicum]
Length = 342
Score = 47.8 bits (112), Expect(2) = 9e-10
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Frame = -3
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
+++ RSVRI +GDKF RHGQK T+ MT ++ + +E IT DIIVNPH
Sbjct: 180 VKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPH 231
Score = 43.5 bits (101), Expect(2) = 9e-10
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG* 323
IP R+TI Q++E GK A H+GKEG A+PF+ L++ G+ G +YNG
Sbjct: 233 IPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDSISRTLHNCGYQMRGFERMYNGH 292
Query: 322 VSEII 308
++
Sbjct: 293 TGRVL 297
>gb|AAT69132.1| RNA polymerase II, partial [Cuscuta europaea]
Length = 191
Score = 48.5 bits (114), Expect(2) = 1e-09
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Frame = -3
Query: 786 DDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLGLR 607
DDA QG A D+S I+ H+E G + + + R +RV
Sbjct: 61 DDA-QGQAARYTKRDHSTILPHSETGMVDQVLLTTN--ADGLRFVKVRV----------- 106
Query: 606 VGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + +E IT DIIVNPH
Sbjct: 107 ---RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPH 153
Score = 42.7 bits (99), Expect(2) = 1e-09
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS 371
IP R+TI QVIE GK A H+GKEG A+PF+
Sbjct: 155 IPSRMTIGQVIECIMGKVAAHMGKEGDATPFT 186
>dbj|BAG72391.1| RNA polymerase II second largest subunit [Machilus rimosa]
Length = 167
Score = 49.7 bits (117), Expect(2) = 1e-09
Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Frame = -3
Query: 786 DDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLGLR 607
D+ QG D+S +RH+E G N +VL GLR
Sbjct: 38 DETQQGQTSRYTRRDHSTSLRHSESGMVN------------------QVLLTTNAD-GLR 78
Query: 606 ---VGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
V RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 79 FVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPH 131
Score = 41.6 bits (96), Expect(2) = 1e-09
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS 371
IP R+TI Q+IE GK A H+GKEG A+PF+
Sbjct: 133 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 164
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 48.9 bits (115), Expect(2) = 1e-09
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = -3
Query: 792 IMDDAHQG*AFGQN*HDNSNIMRHNERGAGNPCIKSIKY*IYACR*ANIRVLFVGQCSLG 613
I D QG A D+S +RH+E G + + + R +RV
Sbjct: 880 IAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTN--ADGLRFVKVRV--------- 928
Query: 612 LRVGRRSVRIYHVGDKF--RHGQKRTVVMT*HEKR--FHSESITQDIIVNPH 469
RSVRI +GDKF RHGQK TV MT ++ + E IT DIIVNPH
Sbjct: 929 -----RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPH 975
Score = 42.0 bits (97), Expect(2) = 1e-09
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Frame = -2
Query: 466 IPFRLTIVQVIESTTGKAADHVGKEGGASPFS---------WLYSFGFSFGG---LYNG 326
IP R+TI Q+IE GK A H+GKEG A+PF+ L+ G+ G +YNG
Sbjct: 977 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1035