BLASTX nr result
ID: Papaver29_contig00047605
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver29_contig00047605
(1337 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABG22121.1| polyprotein [Solanum melongena] 274 e-115
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 230 e-111
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 226 e-111
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 224 e-111
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 231 e-111
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 222 e-110
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 226 e-110
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 218 e-109
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 213 e-107
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 222 e-107
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 213 e-101
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 202 e-100
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 230 e-100
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 224 5e-99
emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera] 209 5e-99
emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group] 225 5e-98
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 197 8e-98
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 196 2e-97
ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712... 202 2e-96
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 201 2e-96
>gb|ABG22121.1| polyprotein [Solanum melongena]
Length = 361
Score = 274 bits (701), Expect(3) = e-115
Identities = 142/208 (68%), Positives = 170/208 (81%), Gaps = 3/208 (1%)
Frame = +3
Query: 171 FVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLT 350
+VY+LLYVDDMLIAAKS+ EID LK QLS EFEMKDLG AKKILGMEI+RDR +GKLCLT
Sbjct: 80 YVYLLLYVDDMLIAAKSQFEIDRLKAQLSKEFEMKDLGEAKKILGMEISRDRQRGKLCLT 139
Query: 351 QKSYLEKVLRRFGMHN-SKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMY 527
QK YL+KVL+RFG+++ SK +S P+ P +KLS QL P T EE+E+M+KVPYAN VGSLMY
Sbjct: 140 QKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSSQLSPKTDEEREYMAKVPYANAVGSLMY 199
Query: 528 VMVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVC--G 701
MVCTR DISQAV VSRYM +PG+ H AVK ILRY++ T+DI LVFE++K+L C G
Sbjct: 200 AMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKWILRYIKNTVDIGLVFEQDKSLGSCVVG 259
Query: 702 FFYSDYAGDRDKCRSTSGYCFTLSGGPI 785
+ SDYAGD DK RST+GY FTL+ GP+
Sbjct: 260 YCDSDYAGDLDKRRSTTGYLFTLAKGPV 287
Score = 108 bits (269), Expect(3) = e-115
Identities = 50/73 (68%), Positives = 64/73 (87%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ V LSTTEAEY+A+TEAVKEA+WL GL+++LG+ Q+ ++V+ DSQSAIHLAK
Sbjct: 288 SWKSTLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLAK 347
Query: 967 NQVYHARTKHIDI 1005
NQV+HARTKHID+
Sbjct: 348 NQVFHARTKHIDV 360
Score = 83.2 bits (204), Expect(3) = e-115
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = +1
Query: 1 EVAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGS 171
+VA KE++VC+L KSLY +KQS RQWYK+FD FM Q+YTRSKYD CVYF K +GS
Sbjct: 24 KVASKENWVCKLNKSLY-MKQSSRQWYKQFDKFMQDQRYTRSKYDHCVYFHKLQNGS 79
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 230 bits (587), Expect(3) = e-111
Identities = 118/201 (58%), Positives = 148/201 (73%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAK KSEI LK QLS EFEMKDLG AKKILGMEI R R KL L+Q
Sbjct: 1215 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQ 1274
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
K Y+EKVLRRF MH++K +S P+ +LS LCP + + E+MS+VPY++ VGSLMY M
Sbjct: 1275 KGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAM 1334
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVCGFFYS 713
VC+RPD+S A+ VSRYMANPG+ H AV+ I RYL+GT L F + ++ + G+ S
Sbjct: 1335 VCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRD-GLVGYVDS 1393
Query: 714 DYAGDRDKCRSTSGYCFTLSG 776
D+AGD D+ RS +GY FT+ G
Sbjct: 1394 DFAGDLDRGRSLAGYVFTIGG 1414
Score = 134 bits (338), Expect(3) = e-111
Identities = 65/118 (55%), Positives = 84/118 (71%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ V LSTTEAEY+A++EA KEA+WLRGL L + + + CDSQSAI L K
Sbjct: 1418 SWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTK 1477
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
+Q++H RTKHID+ YH +R +I G V++ K+ DNPADM+TK VP KFE C SL+
Sbjct: 1478 DQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLV 1535
Score = 89.7 bits (221), Expect(3) = e-111
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+FML QK+ RS YD CVY K ++++
Sbjct: 1159 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYL 1217
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 226 bits (575), Expect(3) = e-111
Identities = 119/200 (59%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAKSK EI LKK LS EF+MKDLG AKKILGMEI+RDR G L L+Q
Sbjct: 1011 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1070
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+Y++KVL+RF M N+KA+S PI P KLS CP+T E E+MS+VPY++ VGSLMY M
Sbjct: 1071 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAM 1130
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEK-EKNLKVCGFFY 710
VC+RPD+S A+ VSRYM+NPG+ H A++ I RYL+GT L F + +K L G+
Sbjct: 1131 VCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKGL--IGYVD 1188
Query: 711 SDYAGDRDKCRSTSGYCFTL 770
SDYA D D+ RS +GY FT+
Sbjct: 1189 SDYAADLDRRRSLTGYVFTI 1208
Score = 144 bits (362), Expect(3) = e-111
Identities = 66/118 (55%), Positives = 90/118 (76%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SWR LQ +V LSTTEAEY+A+ EA KE +WL+GL +L ++ + ++CDSQSAI+L K
Sbjct: 1214 SWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1273
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
+Q++H RTKHIDI YH VR+VI+ G +++ K+ T DNPADM+TK +P KFE C SL+
Sbjct: 1274 DQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLV 1331
Score = 83.6 bits (205), Expect(3) = e-111
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
V GKE YVC+L++SLYGLKQSPRQW KRFD+FML + RSKYD CVY K +++
Sbjct: 955 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYL 1013
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 224 bits (572), Expect(3) = e-111
Identities = 119/200 (59%), Positives = 148/200 (74%), Gaps = 1/200 (0%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAKSK EI LKK LS EF+MKDLG AKKILGMEI+RDR G L L+Q
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+Y++KVL+RF M N+KA+S PI P KLS CP+ E E+MS+VPY++ VGSLMY M
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAM 1128
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEK-EKNLKVCGFFY 710
VC+RPD+S A+ VSRYM+NPG+ H AV+ I RYL+GT L F + +K L G+
Sbjct: 1129 VCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGL--IGYVD 1186
Query: 711 SDYAGDRDKCRSTSGYCFTL 770
SDYA D D+ RS +GY FT+
Sbjct: 1187 SDYAADLDRRRSLTGYVFTI 1206
Score = 145 bits (365), Expect(3) = e-111
Identities = 66/118 (55%), Positives = 90/118 (76%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SWR LQ +V LSTTEAEY+A+ EA KE +WL+GL +L ++ + ++CDSQSAI+L K
Sbjct: 1212 SWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1271
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
+Q++H RTKHIDI YH VR+VI+ G +++ K+ T DNPADM+TK +P KFE C SL+
Sbjct: 1272 DQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329
Score = 83.6 bits (205), Expect(3) = e-111
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
V GKE YVC+L++SLYGLKQSPRQW KRFD+FML + RSKYD CVY K +++
Sbjct: 953 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYL 1011
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 231 bits (589), Expect(3) = e-111
Identities = 120/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAKSK +I LKKQLS EF+MKDLG AKKILGMEI RDR+ G L L+Q
Sbjct: 998 IYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQ 1057
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+SY++KVL+RF MH++K +S PI P KLS C +T E+ E+MS+VPY++ VGSLMY M
Sbjct: 1058 QSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAM 1117
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEK-EKNLKVCGFFY 710
VC+ PD+S A+ VSRYMANPG+ H AV+ I RYL+GT D L F + +K L G+
Sbjct: 1118 VCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRIDKGL--VGYVD 1175
Query: 711 SDYAGDRDKCRSTSGYCFTL 770
SD+A D DK RS +GY FT+
Sbjct: 1176 SDFAADLDKRRSLTGYVFTI 1195
Score = 135 bits (340), Expect(3) = e-111
Identities = 62/118 (52%), Positives = 86/118 (72%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQP+V STTEAEY+A+ EA KE++WL+GL +L + + + CDSQSAI L K
Sbjct: 1201 SWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTK 1260
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
+Q++H RTKHIDI YH VR+++ G +++ K+ DNPADM+TK +P KFE C SL+
Sbjct: 1261 DQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLV 1318
Score = 86.7 bits (213), Expect(3) = e-111
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGS 171
V GKEDYVC+L++SLYGLKQSPRQWYKRFD+FML + RS++D CVY KF +GS
Sbjct: 942 VPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYI-KFVNGS 996
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 222 bits (565), Expect(3) = e-110
Identities = 118/200 (59%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAKSK EI LKK LS EF+MKDLG AKKIL MEI+RDR G L L+Q
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQ 1068
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+Y++KVL+RF M N+KA+S PI P KLS CP+T E E+MS+VPY++ VGSLMY M
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAM 1128
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEK-EKNLKVCGFFY 710
VC+RPD+S A+ VSRYM+NPG+ H V+ I RYL+GT L F + +K L G+
Sbjct: 1129 VCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDKGL--IGYVD 1186
Query: 711 SDYAGDRDKCRSTSGYCFTL 770
SDYA D D+ RS +GY FT+
Sbjct: 1187 SDYAADLDRRRSLTGYVFTI 1206
Score = 145 bits (365), Expect(3) = e-110
Identities = 66/118 (55%), Positives = 90/118 (76%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SWR LQ +V LSTTEAEY+A+ EA KE +WL+GL +L ++ + ++CDSQSAI+L K
Sbjct: 1212 SWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1271
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
+Q++H RTKHIDI YH VR+VI+ G +++ K+ T DNPADM+TK +P KFE C SL+
Sbjct: 1272 DQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329
Score = 83.6 bits (205), Expect(3) = e-110
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
V GKE YVC+L++SLYGLKQSPRQW KRFD+FML + RSKYD CVY K +++
Sbjct: 953 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYL 1011
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 226 bits (575), Expect(3) = e-110
Identities = 116/201 (57%), Positives = 146/201 (72%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAK KSEI LK QLS EFEMKDLG AKKILGMEI R+R GKL L+Q
Sbjct: 917 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 976
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
K Y+EKVL RF MH++K +S + +LS LCP + + E+MS+VPY++ V SLMY M
Sbjct: 977 KCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAM 1036
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVCGFFYS 713
VC+RPD+S A+ VSRYMANPG+ H AV+ I RYL+GT L F + + + G+ S
Sbjct: 1037 VCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSD-GLVGYVDS 1095
Query: 714 DYAGDRDKCRSTSGYCFTLSG 776
D+AGD D+ RS +GY FT+ G
Sbjct: 1096 DFAGDLDRRRSLTGYVFTVGG 1116
Score = 135 bits (339), Expect(3) = e-110
Identities = 65/118 (55%), Positives = 84/118 (71%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ V LSTTEAEY+A++EA KE +WLRGL +L + + + CDSQSAI L K
Sbjct: 1120 SWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTK 1179
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
+Q++H RTKHID+ YH +R VI G V++ K+ T DNP DM+TK VP KFE C SL+
Sbjct: 1180 DQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLV 1237
Score = 89.7 bits (221), Expect(3) = e-110
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+FML QK+ RS YD CVY K ++++
Sbjct: 861 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYL 919
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 218 bits (556), Expect(3) = e-109
Identities = 114/205 (55%), Positives = 147/205 (71%)
Frame = +3
Query: 171 FVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLT 350
F+ +LLYVDDMLI K K I LK LS F+MKDLGPA++ILGM+I R+R+ KL L+
Sbjct: 1002 FIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLS 1061
Query: 351 QKSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYV 530
Q+ Y+E+VL RF M N+K +S P+ +KLSK++CPTT EEK M+KVPY++ VGSLMY
Sbjct: 1062 QEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYA 1121
Query: 531 MVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVCGFFY 710
MVCTRPDI+ AVG VSR++ NPG+ H AVK ILRYL+GT L F + + G+
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTD 1180
Query: 711 SDYAGDRDKCRSTSGYCFTLSGGPI 785
+D AGD D +S++GY FT SGG I
Sbjct: 1181 ADMAGDIDNRKSSTGYLFTFSGGAI 1205
Score = 148 bits (373), Expect(3) = e-109
Identities = 69/118 (58%), Positives = 91/118 (77%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ V LSTTEAEYIA TE KE +WL+ +++LG+ Q+ VV CDSQSAI L+K
Sbjct: 1206 SWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSK 1265
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
N +YHARTKHID+ YH +RE++D+ +++LK+ T +NPADMLTKVVP+ KFE C L+
Sbjct: 1266 NSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELV 1323
Score = 81.6 bits (200), Expect(3) = e-109
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +1
Query: 1 EVAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
EVAGK+ VC+L KSLYGLKQ+PRQWY +FD+FM Q Y ++ D CVYFK+F + + I
Sbjct: 945 EVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFII 1004
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 213 bits (542), Expect(3) = e-107
Identities = 104/207 (50%), Positives = 146/207 (70%), Gaps = 1/207 (0%)
Frame = +3
Query: 168 KFVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCL 347
K + +LLYVDDMLIA + +I LKK+L EF+MKDLG A+KILG+EI RDR+ GK+ L
Sbjct: 973 KVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWL 1032
Query: 348 TQKSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMY 527
+Q+ Y+ K+L RF M +K +S+P+ +LS + P+ +E + M VPYA+ VG LMY
Sbjct: 1033 SQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMY 1092
Query: 528 VMVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEK-NLKVCGF 704
M+CTRPD++QA+ VS+YM+NPG+ H AVK I +YL+ T + ++FE+ + V GF
Sbjct: 1093 AMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAGF 1152
Query: 705 FYSDYAGDRDKCRSTSGYCFTLSGGPI 785
SD+AGD D+ RST+GY FT GGP+
Sbjct: 1153 VDSDFAGDLDRRRSTAGYVFTCGGGPV 1179
Score = 140 bits (353), Expect(3) = e-107
Identities = 67/111 (60%), Positives = 84/111 (75%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ + LSTTEAEY+A+TEA KEA+WL GL LG+ Q VVV CDSQSAIHLAK
Sbjct: 1180 SWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAK 1239
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKF 1119
NQV+HARTKHID YH++R+ ++ G++ + KV T+DN AD LTK V K+
Sbjct: 1240 NQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEKY 1290
Score = 86.7 bits (213), Expect(3) = e-107
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = +1
Query: 10 GKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
GKE+ VCRL+KSLYGLKQSPRQWYK FDT+ML+ YTR +YD CVY+ F DG + +
Sbjct: 920 GKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVIL 976
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 222 bits (565), Expect(3) = e-107
Identities = 115/199 (57%), Positives = 148/199 (74%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAKSK +I LKKQLS EF+MKDL AKKILGMEI RDR+ G L L+Q
Sbjct: 851 IYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLDAAKKILGMEITRDRNSGWLFLSQ 910
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+SY++KVL+RF MH++K +S I P KLS C +T E+ E+MS+VPY++VVGSLMY M
Sbjct: 911 QSYIKKVLQRFNMHDTKPVSTHIAPHFKLSALQCASTDEDVEYMSRVPYSSVVGSLMYAM 970
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVCGFFYS 713
VC+R D+S A+ VSRYMANPG+ H A++ I RYL+ T + L F + N + G+ S
Sbjct: 971 VCSRLDLSHAMSLVSRYMANPGKEHWKAIQWIFRYLRDTANACLKFGR-TNKGLIGYVDS 1029
Query: 714 DYAGDRDKCRSTSGYCFTL 770
D+A D DK RS +GY FT+
Sbjct: 1030 DFAADLDKRRSLTGYVFTI 1048
Score = 131 bits (329), Expect(3) = e-107
Identities = 62/118 (52%), Positives = 85/118 (72%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ L+ +V STTEAEY+A+ EA KE++WL+GL +L + + + CDSQSAI L K
Sbjct: 1054 SWKATLRHVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVYSCINLFCDSQSAICLTK 1113
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
+Q++H RTKHIDI YH VR+V+ G +++ K+ T DNP DM+TK VP KFE C SL+
Sbjct: 1114 DQMFHERTKHIDIKYHYVRDVVAQGKLKVCKISTHDNPVDMMTKHVPVAKFELCSSLV 1171
Score = 85.5 bits (210), Expect(3) = e-107
Identities = 36/50 (72%), Positives = 43/50 (86%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 153
V GKEDYVC+L++SLYGLKQSPRQWYKRFD+FML + RS++D CVY K
Sbjct: 795 VPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIK 844
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 213 bits (542), Expect(3) = e-101
Identities = 111/205 (54%), Positives = 145/205 (70%)
Frame = +3
Query: 171 FVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLT 350
F+ +LLYVDDMLI ++ S I+ LK+QLS F MKDLGPAK+ILGM I RDR KL L+
Sbjct: 1003 FIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLS 1062
Query: 351 QKSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYV 530
Q+ Y+EKVL+RF M +KA+S P+ +LS + P+T +E+ M ++PYA+ VGSLMY
Sbjct: 1063 QEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYA 1122
Query: 531 MVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVCGFFY 710
MVCTRPDI+ AVG VSR+++NPG+ H AVK ILRYL+GT + L F E N + G+
Sbjct: 1123 MVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCF-GEDNPVLVGYTD 1181
Query: 711 SDYAGDRDKCRSTSGYCFTLSGGPI 785
+D AGD D +STSGY SGG +
Sbjct: 1182 ADMAGDVDSRKSTSGYLINFSGGAV 1206
Score = 127 bits (319), Expect(3) = e-101
Identities = 59/114 (51%), Positives = 84/114 (73%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ V LSTTEAE+IA TEA KE +W++ + +LG Q + CDSQSAIHLAK
Sbjct: 1207 SWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSAIHLAK 1266
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERC 1128
N +H+R+KHID+ Y+ +R+V++ +++L K+ T++N +DMLTK +PK KFE C
Sbjct: 1267 NASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLPKGKFEFC 1320
Score = 78.6 bits (192), Expect(3) = e-101
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +1
Query: 10 GKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
GKEDYVCRL KSLYGLKQ+PRQWYK+F++ M Q Y ++ D CV+ +KF D I
Sbjct: 949 GKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFII 1005
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 202 bits (513), Expect(3) = e-100
Identities = 110/201 (54%), Positives = 142/201 (70%), Gaps = 2/201 (0%)
Frame = +3
Query: 177 YILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQK 356
Y+LLYVDDMLIA+K KSEI+ LK L EFEMKDLG AK+ILGM+I RDRS G L L+Q
Sbjct: 1008 YLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQG 1067
Query: 357 SYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVMV 536
Y++KVL RF M + K + P+ P KLS TT+E++ M++ PYA VGSLMY MV
Sbjct: 1068 KYIKKVLERFEMQDCKPVQTPLGPQFKLS---AATTSEDESQMNEFPYAQAVGSLMYAMV 1124
Query: 537 CTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKN--LKVCGFFY 710
CTR DI+ AV VSRY++ PG+ H AVK I+RYL+G+ L++ K K+ ++V GF
Sbjct: 1125 CTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIEVMGFVD 1184
Query: 711 SDYAGDRDKCRSTSGYCFTLS 773
SD+AGD D+ +STS Y F L+
Sbjct: 1185 SDFAGDLDRRKSTSRYMFVLN 1205
Score = 132 bits (332), Expect(3) = e-100
Identities = 65/120 (54%), Positives = 86/120 (71%)
Frame = +1
Query: 781 LFSWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHL 960
L SW+ LQ LS+TEAE+IA TEAVKEA+WLRGL+ +L + Q+ V V CD+Q+AIHL
Sbjct: 1208 LISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHL 1267
Query: 961 AKNQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
KNQ+YH RTKHID+ +R+ + G V + K+ T NPAD LTK +P KFE C++L+
Sbjct: 1268 VKNQMYHERTKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAKFEFCVNLM 1327
Score = 83.2 bits (204), Expect(3) = e-100
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = +1
Query: 1 EVAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYF 150
E KEDYVC L KSLYGLKQSPRQWY+RFD FM+ + Y RS+YD CVYF
Sbjct: 949 ECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYF 998
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 230 bits (586), Expect(3) = e-100
Identities = 120/198 (60%), Positives = 150/198 (75%), Gaps = 1/198 (0%)
Frame = +3
Query: 183 LLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQKSY 362
LLYVDDMLIAAKSK +I LKKQLS EF+MKDLG AKKILGMEI RDR+ G L L+Q+SY
Sbjct: 684 LLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSY 743
Query: 363 LEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVMVCT 542
++ VL+RF MH++K +S+PI P KLS C +T E+ E+MS+VPY++ VGSLMY MVC+
Sbjct: 744 IKNVLQRFNMHDAKLVSIPIAPHFKLSVLQCASTDEDVEYMSRVPYSSAVGSLMYAMVCS 803
Query: 543 RPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEK-EKNLKVCGFFYSDY 719
RPD+S A+ VSRYMANPG+ H AV+ I RYL+GT D L F + +K L G+ SD+
Sbjct: 804 RPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKGL--VGYVDSDF 861
Query: 720 AGDRDKCRSTSGYCFTLS 773
A D DK RS +GY FT+S
Sbjct: 862 AADLDKRRSLTGYVFTIS 879
Score = 102 bits (255), Expect(3) = e-100
Identities = 47/85 (55%), Positives = 64/85 (75%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQP+V STTEAEY+A+ EA KE++WL+GL +L + +++ CDSQSAI L K
Sbjct: 884 SWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCIILFCDSQSAICLTK 943
Query: 967 NQVYHARTKHIDIHYHKVREVIDNG 1041
+Q++H RTKHIDI YH VR+V+ G
Sbjct: 944 DQMFHERTKHIDIKYHYVRDVVVQG 968
Score = 82.8 bits (203), Expect(3) = e-100
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFIF 183
V GKE YVC+L++S YGLKQSPRQWYKRFD FML + RS++D CVY K +++
Sbjct: 626 VPGKEGYVCKLKRSFYGLKQSPRQWYKRFDLFMLSHGFKRSEFDSCVYIKFVNGSPIYLL 685
Query: 184 Y 186
Y
Sbjct: 686 Y 686
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 224 bits (572), Expect(3) = 5e-99
Identities = 119/200 (59%), Positives = 148/200 (74%), Gaps = 1/200 (0%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAKSK EI LKK LS EF+MKDLG AKKILGMEI+RDR G L L+Q
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+Y++KVL+RF M N+KA+S PI P KLS CP+ E E+MS+VPY++ VGSLMY M
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAM 1128
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEK-EKNLKVCGFFY 710
VC+RPD+S A+ VSRYM+NPG+ H AV+ I RYL+GT L F + +K L G+
Sbjct: 1129 VCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGL--IGYVD 1186
Query: 711 SDYAGDRDKCRSTSGYCFTL 770
SDYA D D+ RS +GY FT+
Sbjct: 1187 SDYAADLDRRRSLTGYVFTI 1206
Score = 104 bits (259), Expect(3) = 5e-99
Identities = 47/83 (56%), Positives = 65/83 (78%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SWR LQ +V LSTTEAEY+A+ EA KE +WL+GL +L ++ + ++CDS+SAI+L K
Sbjct: 1212 SWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLTK 1271
Query: 967 NQVYHARTKHIDIHYHKVREVID 1035
+Q++H RTKHIDI YH VR+VI+
Sbjct: 1272 DQMFHERTKHIDIKYHFVRDVIE 1294
Score = 83.6 bits (205), Expect(3) = 5e-99
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
V GKE YVC+L++SLYGLKQSPRQW KRFD+FML + RSKYD CVY K +++
Sbjct: 953 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYL 1011
>emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera]
Length = 809
Score = 209 bits (531), Expect(3) = 5e-99
Identities = 110/205 (53%), Positives = 141/205 (68%)
Frame = +3
Query: 171 FVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLT 350
FV +LLYVDD+LI ++ S ID LKKQLS F MKDLGP KKILG+ I RDR+ KL ++
Sbjct: 481 FVILLLYVDDILIVGRNVSRIDKLKKQLSKSFSMKDLGPVKKILGIRIERDRASKKLYMS 540
Query: 351 QKSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYV 530
Q+ Y+EKVL RF M +K ++ P+ KLS++ P+ +EKE M +VPYA+ VGSLM
Sbjct: 541 QEQYIEKVLERFNMSKAKVVNSPLASHFKLSRRHSPSIDKEKEDMRRVPYASAVGSLMNP 600
Query: 531 MVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVCGFFY 710
MVCTRPDI+ +G VSR+++NPGR H AVK I+RYLQGT + L FE K + V +
Sbjct: 601 MVCTRPDIAYVIGVVSRFLSNPGRLHWEAVKWIMRYLQGTSKLKLTFESGKPVLV-SYTD 659
Query: 711 SDYAGDRDKCRSTSGYCFTLSGGPI 785
S+ AGD D R T GY T SGG +
Sbjct: 660 SNMAGDVDNRRPTLGYLMTFSGGAV 684
Score = 128 bits (322), Expect(3) = 5e-99
Identities = 60/120 (50%), Positives = 83/120 (69%)
Frame = +1
Query: 790 WRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAKN 969
W+ LQ V LSTTEAEYIA EA KE LW++ + +LG Q+ VV CD+QS IHL+KN
Sbjct: 686 WQSRLQKSVALSTTEAEYIAAAEACKELLWMKRFIHELGFKQQRYVVYCDNQSVIHLSKN 745
Query: 970 QVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLINTA 1149
++HAR+KHID+ YH +R+ +++ L +L K+ + N +DMLTK +PK K E C S+ A
Sbjct: 746 SIFHARSKHIDVRYHWMRDALNDNLFELEKIHIDHNGSDMLTKSLPKEKLEVCCSIAEMA 805
Score = 75.1 bits (183), Expect(3) = 5e-99
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGSLFI 180
+ GKEDY C+L+KSLYGLKQ+PRQWYK+F++ M +Q Y ++ + CV+ KF D I
Sbjct: 425 IKGKEDYACKLKKSLYGLKQAPRQWYKKFESVMGEQGYKKTTSNHCVFVHKFSDDDFVI 483
>emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group]
Length = 375
Score = 225 bits (573), Expect(3) = 5e-98
Identities = 118/200 (59%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLYVDDMLIAAKSK +I LKKQLS EF+MK+LG AKKILGMEI RDR+ G L L+Q
Sbjct: 65 IYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKNLGAAKKILGMEITRDRNSGLLFLSQ 124
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+SY++KVL+RF MH++K +S PI KLS C +T E+ E+MS+VPY++ VGSLMY M
Sbjct: 125 QSYIKKVLQRFNMHDAKPVSTPIVSHFKLSALQCASTDEDVEYMSRVPYSSDVGSLMYAM 184
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEK-EKNLKVCGFFY 710
VC+RPD+S A+ VSRYMANPG+ H AV+ I RYL+GT D L F + +K L G+
Sbjct: 185 VCSRPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKGL--VGYVD 242
Query: 711 SDYAGDRDKCRSTSGYCFTL 770
SD+A D DK RS + Y FT+
Sbjct: 243 SDFAADLDKRRSLTDYVFTI 262
Score = 97.8 bits (242), Expect(3) = 5e-98
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQP+V STTEAEY+A+ EA KE++WL+GL +L + + + CDSQSAI L K
Sbjct: 268 SWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTK 327
Query: 967 NQVYHARTKHIDIHYHKVREVIDNG 1041
+Q++H RTKHIDI YH V +V+ G
Sbjct: 328 DQMFHERTKHIDIKYHYVCDVVAQG 352
Score = 86.7 bits (213), Expect(3) = 5e-98
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1
Query: 4 VAGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGS 171
V GKEDYVC+L++SLYGLKQSPRQWYKRFD+FML + RS++D CVY KF +GS
Sbjct: 9 VPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYI-KFVNGS 63
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 197 bits (501), Expect(3) = 8e-98
Identities = 99/205 (48%), Positives = 137/205 (66%)
Frame = +3
Query: 171 FVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLT 350
++Y+LLYVDDMLIA+++K +I LK+ L+ EFEMKDLGPA+KILGMEI R+R +G L L+
Sbjct: 1015 YIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILDLS 1074
Query: 351 QKSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYV 530
Q Y+ VLR FGM SK P+ KL T + E+M VPY N +GS+MY
Sbjct: 1075 QSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPNAIGSIMYS 1134
Query: 531 MVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLKVCGFFY 710
M+ +RPD++ VG VSR+M+ P + H AVK ++RY++GT D L F+K+ ++ G+
Sbjct: 1135 MIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFKKDDKFEIRGYCD 1194
Query: 711 SDYAGDRDKCRSTSGYCFTLSGGPI 785
SDYA D D+ RS +G+ FT G I
Sbjct: 1195 SDYATDLDRRRSITGFVFTAGGNTI 1219
Score = 138 bits (348), Expect(3) = 8e-98
Identities = 67/121 (55%), Positives = 88/121 (72%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ +V LSTTEAEY+A+ EAVKEA+WLRGL ++G Q +V V CDSQSAI L+K
Sbjct: 1220 SWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSK 1279
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLINT 1146
N V+H RTKHID+ YH +RE I +G +Q++K+ T NPAD+ TK VP K + L L+
Sbjct: 1280 NSVHHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLLRV 1339
Query: 1147 A 1149
+
Sbjct: 1340 S 1340
Score = 72.8 bits (177), Expect(3) = 8e-98
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = +1
Query: 25 VCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPDGS 171
VC L+KSLYGLKQSPRQW +RFD+FM+ Y RSKY+ CVY ++ DGS
Sbjct: 966 VCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGS 1014
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 196 bits (497), Expect(3) = 2e-97
Identities = 105/212 (49%), Positives = 142/212 (66%), Gaps = 2/212 (0%)
Frame = +3
Query: 156 VSRWKFVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKG 335
VS F+Y+LLYVDDMLIA SK+EI+ +K+QLS EFEMKD+G A +ILG++I RDR G
Sbjct: 1026 VSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGG 1085
Query: 336 KLCLTQKSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSK--VPYANV 509
L L+Q+ Y+ KVL RF M +K + P+ KL+ EE E + VPY++
Sbjct: 1086 VLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLA-----AVREEDECVDTDVVPYSSA 1140
Query: 510 VGSLMYVMVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNL 689
VGS+MY M+ TRPD++ A+ +SRYM+ PG H AVK ++RYL+G D+ LVF KEK+
Sbjct: 1141 VGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDF 1200
Query: 690 KVCGFFYSDYAGDRDKCRSTSGYCFTLSGGPI 785
V G+ S+YA D D+ RS SGY FT+ G +
Sbjct: 1201 TVTGYCDSNYAADLDRRRSISGYVFTIGGNTV 1232
Score = 139 bits (350), Expect(3) = 2e-97
Identities = 63/118 (53%), Positives = 90/118 (76%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQP+V +STTEAEYIA+ EA KEA+W++GL++D+G+ Q V + CDSQSAI L+K
Sbjct: 1233 SWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSK 1292
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
N VYH RTKHID+ ++ +R+V+++G V +LK+ T NP D LTK +P KF+ L ++
Sbjct: 1293 NSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVL 1350
Score = 72.4 bits (176), Expect(3) = 2e-97
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = +1
Query: 16 EDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 153
E+ VCRL+KSLYGLKQSPRQW KRFD FM Q++ RS++D CVY K
Sbjct: 979 ENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVK 1024
>ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712082 [Phoenix dactylifera]
Length = 2199
Score = 202 bits (515), Expect(3) = 2e-96
Identities = 106/216 (49%), Positives = 144/216 (66%), Gaps = 12/216 (5%)
Frame = +3
Query: 174 VYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSKGKLCLTQ 353
+Y+LLY+DDMLIA++S ++ LK LS EFEMKDLGP++KIL MEI +DR K L L+
Sbjct: 1095 LYLLLYMDDMLIASRSADVVNGLKIALSAEFEMKDLGPSRKILRMEICKDRCKSILHLSL 1154
Query: 354 KSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSKVPYANVVGSLMYVM 533
+ Y++KVL RFGM+ +K + P+ + L K CP EEK +M +VPYA+VVGS+MY M
Sbjct: 1155 RGYIQKVLERFGMNEAKPVGTPLASQMTLFKLQCPQIDEEKGYMERVPYASVVGSVMYAM 1214
Query: 534 VCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKNLK------- 692
VC RPDI+ AV VSRYMANPG+ H A+K I RYLQGT + L+F ++ L+
Sbjct: 1215 VCCRPDIAHAVSQVSRYMANPGKEHWKALKWIFRYLQGTRRLGLIFGQQYGLRRNSNVSS 1274
Query: 693 -----VCGFFYSDYAGDRDKCRSTSGYCFTLSGGPI 785
+ F +++ GD D RST GY F++ GP+
Sbjct: 1275 EFSGPLEEFVDANFVGDLDTKRSTIGYVFSMYSGPV 1310
Score = 134 bits (336), Expect(3) = 2e-96
Identities = 63/118 (53%), Positives = 87/118 (73%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SWR LQ I LSTTEAEYI +TE KEAL L+ L++++G+ Q +VV++ DSQSA+ L +
Sbjct: 1311 SWRSTLQSITALSTTEAEYIGITEVAKEALCLKRLIQEMGVNQSTVVLHSDSQSALQLVQ 1370
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 1140
N VYHART HID+ YHK+RE+++ G V L+KV T+ N +D LTK +P+ F C+ L+
Sbjct: 1371 NPVYHARTNHIDMRYHKIRELVEEGEVMLVKVHTKKNQSDALTKTLPRDSFLSCVGLM 1428
Score = 67.0 bits (162), Expect(3) = 2e-96
Identities = 29/49 (59%), Positives = 37/49 (75%)
Frame = +1
Query: 7 AGKEDYVCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 153
+G E VC L++SLYGL QSPRQWYKRFD F+L ++R ++D CVY K
Sbjct: 1039 SGLEKKVCLLKRSLYGLTQSPRQWYKRFDAFVLSFGFSRCEHDSCVYVK 1087
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 201 bits (510), Expect(3) = 2e-96
Identities = 106/213 (49%), Positives = 145/213 (68%), Gaps = 2/213 (0%)
Frame = +3
Query: 153 EVSRWKFVYILLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEINRDRSK 332
+V+ + +Y+LLYVDDMLIA K+KSEI+ +K+QLS+EFEMKD+GPA +ILG++I RDR
Sbjct: 256 QVTEQEHLYLLLYVDDMLIAGKNKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKN 315
Query: 333 GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPPTVKLSKQLCPTTTEEKEFMSK--VPYAN 506
G L ++Q SY+ V++RF M +K PI KL+ ++ E + VPYA+
Sbjct: 316 GVLRMSQASYIHNVVQRFNMAEAKVTRSPIGAHFKLA-----AVRDDDECIDNNVVPYAS 370
Query: 507 VVGSLMYVMVCTRPDISQAVGSVSRYMANPGRAHRYAVKGILRYLQGTLDIVLVFEKEKN 686
VGS+MY M+ TRPD++ + VSRYMA PG H AVK ILRY++G+ D+ LVF KEK
Sbjct: 371 AVGSIMYAMIGTRPDLAYDICLVSRYMARPGSIHWEAVKWILRYMRGSQDLNLVFTKEKE 430
Query: 687 LKVCGFFYSDYAGDRDKCRSTSGYCFTLSGGPI 785
+V G+ SDYA D D+ RS SGY FT+ G +
Sbjct: 431 FRVTGYCDSDYAADLDRRRSVSGYVFTVGGNTV 463
Score = 137 bits (345), Expect(3) = 2e-96
Identities = 65/122 (53%), Positives = 89/122 (72%)
Frame = +1
Query: 787 SWRFMLQPIVPLSTTEAEYIAVTEAVKEALWLRGLVKDLGIIQRSVVVNCDSQSAIHLAK 966
SW+ LQ + LSTTEAE++A+TEA KEALW++GL+KDLG+ Q V + CDSQSAI L+K
Sbjct: 464 SWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSAICLSK 523
Query: 967 NQVYHARTKHIDIHYHKVREVIDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLINT 1146
N +H RTKHID+ Y+ +R+V++ G V +LK+ T NPAD LTK +P KF+ L L+
Sbjct: 524 NSTHHERTKHIDVRYNFIRDVVEAGDVDVLKIHTSRNPADALTKSIPVNKFQSALELLKL 583
Query: 1147 AR 1152
+
Sbjct: 584 VK 585
Score = 65.5 bits (158), Expect(3) = 2e-96
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +1
Query: 25 VCRLEKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKK 156
VC L+K LYGLKQSPRQW KRF+ FM+ Q + RS++D CVY K+
Sbjct: 213 VCLLKKLLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQ 256