BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00037694
         (4281 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012701527.1| PREDICTED: uncharacterized protein LOC105914...   308   1e-92
ref|XP_012701436.1| PREDICTED: uncharacterized protein LOC105914...   305   1e-92
gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-...   292   2e-92
ref|XP_012703734.1| PREDICTED: uncharacterized protein LOC101755...   292   2e-89
gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]                293   1e-88
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   316   1e-82
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   309   2e-80
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   307   5e-80
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   307   6e-80
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   306   1e-79
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   305   2e-79
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   304   5e-79
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...   303   9e-79
ref|XP_012084305.1| PREDICTED: uncharacterized protein LOC105643...   301   3e-78
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   300   6e-78
gb|AAB82754.1| retrofit [Oryza longistaminata]                        299   1e-77
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   299   2e-77
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  298   4e-77
ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513, p...   295   3e-76
gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Ho...   292   2e-75

>ref|XP_012701527.1| PREDICTED: uncharacterized protein LOC105914440 [Setaria italica]
          Length = 961

 Score =  308 bits (789), Expect(2) = 1e-92
 Identities = 162/290 (55%), Positives = 204/290 (70%), Gaps = 2/290 (0%)
 Frame = -2

Query: 1046 FLELKRFCTSSGLFLSQQRYDHDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DAS 873
            FL ++      G+ L+Q++Y  DLL R  +   KP+  PLSTS  +     +LL   D S
Sbjct: 675  FLGIEVAKVRDGIVLTQRKYASDLLKRVGMSDCKPVNTPLSTSEKLSLHEGSLLGPDDTS 734

Query: 872  EYRSIVGALQYLTFTRPDLAYAVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRP 693
             YRSIVGALQYLT TRPD+A++VNKVCQF+HAPT  HW  VK ILRYLK     G+ ++ 
Sbjct: 735  RYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWAAVKRILRYLKQCTELGLKIQK 794

Query: 692  SSSLQLSFNAYVDSDWAGSLDDRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGL 513
            S S  +S  A+ D+DWAGS+DDRRST G+ V LG N++S SARKQ TVSRSSTE+EY+ +
Sbjct: 795  SPSTLVS--AFSDADWAGSVDDRRSTGGFAVFLGSNLVSWSARKQATVSRSSTESEYKAI 852

Query: 512  AIAIAEIMWIQSLLSELRVSTQSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQ 333
            A A AE+MWIQ+LL EL + +     LWCDN+GA YL+ NP+FHARTKHIE+DYHFVR++
Sbjct: 853  ANATAEVMWIQTLLRELGIPSPKAARLWCDNIGAKYLSANPVFHARTKHIEVDYHFVRER 912

Query: 332  VAFKLLDVRFISSKDQIADIFTKPLSKDRFSLLRFKLTVQDNPLRLREGV 183
            VA KLL++ F+SS DQIAD FTK LS     L  FK+ +    LRLRE V
Sbjct: 913  VARKLLEIEFVSSGDQIADGFTKALSVR--LLENFKVNLNLERLRLREAV 960



 Score = 63.9 bits (154), Expect(2) = 1e-92
 Identities = 34/62 (54%), Positives = 40/62 (64%)
 Frame = -1

Query: 1218 SKCDSSLFIYNGPYDTIYLLVYVDDIIVTGSNSMGITSILTRLQQEFAIKDLGALSYFLG 1039
            S  D+SLF Y     ++YLLVYVDDII+  S     T +L  LQ EFA+ DLG L YFLG
Sbjct: 618  SPADTSLFFYRKNDVSMYLLVYVDDIIIASSTPHATTVLLQDLQGEFALTDLGDLHYFLG 677

Query: 1038 IE 1033
            IE
Sbjct: 678  IE 679


>ref|XP_012701436.1| PREDICTED: uncharacterized protein LOC105914402 [Setaria italica]
          Length = 993

 Score =  305 bits (780), Expect(2) = 1e-92
 Identities = 150/270 (55%), Positives = 198/270 (73%), Gaps = 2/270 (0%)
 Frame = -2

Query: 1016 SGLFLSQQRYDHDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQ 843
            +G+ L+Q++Y  D+L R  +   KP+  P+STS  + +   T L   DA+ YRS+VGALQ
Sbjct: 723  NGILLTQEKYARDVLHRVGMKDCKPVSTPMSTSEKLSAQEGTPLGPKDATAYRSVVGALQ 782

Query: 842  YLTFTRPDLAYAVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNA 663
            YLT TRPD+++AVNKVCQ++HAPT  HW  VK ILRYLK+T   G+ +  +SSL +S  A
Sbjct: 783  YLTLTRPDISFAVNKVCQYLHAPTTLHWAAVKRILRYLKHTMKIGLRISKTSSLLVS--A 840

Query: 662  YVDSDWAGSLDDRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWI 483
            + D+DWAG +DDRRST G+ V LG N+I+ SARKQ TVSRSSTEAEY+ +A A AEIMWI
Sbjct: 841  FSDADWAGDVDDRRSTGGFAVFLGSNLIAWSARKQATVSRSSTEAEYKAVANATAEIMWI 900

Query: 482  QSLLSELRVSTQSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRF 303
            Q LL EL +       LWCDN+GA YL+ NP+FHARTKHIE+DYHFVR++VA +LLD+ F
Sbjct: 901  QILLYELGIQAPRAAKLWCDNIGAKYLSANPVFHARTKHIEVDYHFVRERVARRLLDIEF 960

Query: 302  ISSKDQIADIFTKPLSKDRFSLLRFKLTVQ 213
            IS++DQ+AD FTKPL   +  + +  L ++
Sbjct: 961  ISTRDQVADGFTKPLPVRQLEMFKNNLNLR 990



 Score = 67.0 bits (162), Expect(2) = 1e-92
 Identities = 35/62 (56%), Positives = 42/62 (67%)
 Frame = -1

Query: 1218 SKCDSSLFIYNGPYDTIYLLVYVDDIIVTGSNSMGITSILTRLQQEFAIKDLGALSYFLG 1039
            S  D+SLF Y     TI++LVYVDDIIV  S     T +L  L++EFA+KDLG L YFLG
Sbjct: 656  SPADTSLFFYQKGPVTIFILVYVDDIIVASSAQEATTCLLQDLRKEFALKDLGELHYFLG 715

Query: 1038 IE 1033
            IE
Sbjct: 716  IE 717


>gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-class, partial
            [Oryza sativa Japonica Group]
          Length = 352

 Score =  292 bits (747), Expect(2) = 2e-92
 Identities = 147/279 (52%), Positives = 197/279 (70%), Gaps = 2/279 (0%)
 Frame = -2

Query: 1046 FLELKRFCTSSGLFLSQQRYDHDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDAS 873
            FL ++      G+ +SQ++Y  DLL R  +   K +  PLS S  + + + T+L  +DA+
Sbjct: 67   FLGIEVTKIPGGILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDAT 126

Query: 872  EYRSIVGALQYLTFTRPDLAYAVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRP 693
            +YRSIVGALQYLT TR D+A++VNKVCQF+H PT  HW  VK ILRY+K     G+ +  
Sbjct: 127  QYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICK 186

Query: 692  SSSLQLSFNAYVDSDWAGSLDDRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGL 513
            SSS+ +S   Y D+DWAG LDDRRST G+ V LG N++S +A+KQ TVSRSSTEAEY+ L
Sbjct: 187  SSSMIVS--GYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYKAL 244

Query: 512  AIAIAEIMWIQSLLSELRVSTQSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQ 333
            A A AEIMW+Q+LL EL + + +   LWCDN+GA YL+ NP+FHARTKHIE+DYHFVR++
Sbjct: 245  ANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVFHARTKHIEVDYHFVRER 304

Query: 332  VAFKLLDVRFISSKDQIADIFTKPLSKDRFSLLRFKLTV 216
            VA KLL V ++S+ DQ+AD FTK L   +    ++ L +
Sbjct: 305  VARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNL 343



 Score = 79.0 bits (193), Expect(2) = 2e-92
 Identities = 40/70 (57%), Positives = 50/70 (71%)
 Frame = -1

Query: 1242 LLQIGFVTSKCDSSLFIYNGPYDTIYLLVYVDDIIVTGSNSMGITSILTRLQQEFAIKDL 1063
            L  +GF  SK D+SLF YN    TI+LL+YVDDIIV  S    ++++L  LQ+EFA+KDL
Sbjct: 2    LHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDL 61

Query: 1062 GALSYFLGIE 1033
            G L YFLGIE
Sbjct: 62   GDLHYFLGIE 71


>ref|XP_012703734.1| PREDICTED: uncharacterized protein LOC101755795 [Setaria italica]
          Length = 778

 Score =  292 bits (747), Expect(2) = 2e-89
 Identities = 145/268 (54%), Positives = 191/268 (71%), Gaps = 2/268 (0%)
 Frame = -2

Query: 1013 GLFLSQQRYDHDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQY 840
            G+ L+Q++Y  DLL R  +   KP+  P+++S  +     T L   DA+ YRS+VGALQY
Sbjct: 510  GIILTQEKYATDLLKRVNMAECKPVTTPMASSEKLSLYEGTPLGPRDATNYRSVVGALQY 569

Query: 839  LTFTRPDLAYAVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAY 660
            LT TRPD+A+AVNKVCQF+H+PT  HW  VK ILRY+K     G+ +  S S  +S  A+
Sbjct: 570  LTLTRPDIAFAVNKVCQFLHSPTTVHWEAVKRILRYIKYCTRLGLRIHRSQSTLVS--AF 627

Query: 659  VDSDWAGSLDDRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQ 480
             D+DWAG++DD RST G+ V LG N++S S+RKQ TVSRSSTE+EY+ +A A AE+MWIQ
Sbjct: 628  SDADWAGNIDDTRSTGGFAVFLGSNLVSWSSRKQPTVSRSSTESEYKAIANATAEVMWIQ 687

Query: 479  SLLSELRVSTQSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFI 300
             LL EL+++      LWCDN+GA YL+ NP+FHARTKHIE+DYHFVR++V  +LLD+ FI
Sbjct: 688  ILLYELKINCPRAAKLWCDNIGAKYLSANPVFHARTKHIEVDYHFVRERVTRRLLDIDFI 747

Query: 299  SSKDQIADIFTKPLSKDRFSLLRFKLTV 216
            SS DQ+AD FTKPLS       +F L +
Sbjct: 748  SSGDQVADGFTKPLSVRSLEQFKFNLNL 775



 Score = 68.9 bits (167), Expect(2) = 2e-89
 Identities = 35/62 (56%), Positives = 43/62 (69%)
 Frame = -1

Query: 1218 SKCDSSLFIYNGPYDTIYLLVYVDDIIVTGSNSMGITSILTRLQQEFAIKDLGALSYFLG 1039
            S  D+SLF YN    T+++LVYVDDIIV  S     T++L  L+ EFA+KDLG L YFLG
Sbjct: 442  SPADTSLFFYNKGDVTMFVLVYVDDIIVASSTEKATTALLQDLKAEFALKDLGELHYFLG 501

Query: 1038 IE 1033
            IE
Sbjct: 502  IE 503


>gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]
          Length = 1012

 Score =  293 bits (749), Expect(2) = 1e-88
 Identities = 154/279 (55%), Positives = 199/279 (71%), Gaps = 2/279 (0%)
 Frame = -2

Query: 1043 LELKRFCTSSGLFLSQQRYDHDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASE 870
            +E+KR  TS  + L+Q+RY  ++L R+ +D   P+  PL +S  +  +    L   DA++
Sbjct: 736  IEVKRGNTS--MLLTQERYATEVLKRSGMDKCHPVDTPLCSSEKLSIEDGNKLGSEDATK 793

Query: 869  YRSIVGALQYLTFTRPDLAYAVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPS 690
            Y S+VGALQYLT TRPD+++AVNKVCQF+H+PT  HW  VK ILRY+K T   GI    S
Sbjct: 794  YCSVVGALQYLTLTRPDISFAVNKVCQFLHSPTTIHWSAVKRILRYIKGTTKLGIKFSKS 853

Query: 689  SSLQLSFNAYVDSDWAGSLDDRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLA 510
             S+ +S  A+ D+DWAG +DDRRST G+ V LG N+IS +A+KQ TVSRSSTEAEY+ LA
Sbjct: 854  ESMLVS--AFADADWAGCVDDRRSTGGFAVFLGNNLISWTAKKQPTVSRSSTEAEYKALA 911

Query: 509  IAIAEIMWIQSLLSELRVSTQSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQV 330
             A AE++W+Q LL+EL V       LWCDNLGATYL+ NPIFHARTKHIEID+HFVR++V
Sbjct: 912  NATAEMIWVQKLLNELGVRHPPRARLWCDNLGATYLSANPIFHARTKHIEIDFHFVRERV 971

Query: 329  AFKLLDVRFISSKDQIADIFTKPLSKDRFSLLRFKLTVQ 213
            A KLL+VRFIS+ DQ+AD FTK L   +    R  L +Q
Sbjct: 972  AQKLLEVRFISTGDQLADGFTKALPVIKLKKFRDNLNLQ 1010



 Score = 65.5 bits (158), Expect(2) = 1e-88
 Identities = 33/62 (53%), Positives = 43/62 (69%)
 Frame = -1

Query: 1218 SKCDSSLFIYNGPYDTIYLLVYVDDIIVTGSNSMGITSILTRLQQEFAIKDLGALSYFLG 1039
            S  D+SLF +N    T+++LVYVDDIIV  S+     ++L  LQ +FA+KDLG L YFLG
Sbjct: 676  SPADASLFYFNKGRYTLFVLVYVDDIIVASSSPDATKALLVDLQHDFALKDLGDLHYFLG 735

Query: 1038 IE 1033
            IE
Sbjct: 736  IE 737


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  316 bits (809), Expect = 1e-82
 Identities = 183/374 (48%), Positives = 239/374 (63%), Gaps = 9/374 (2%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKL-DLLLQSV---THLYLSTMAHMTLFICWCMWMI 1143
            CKL ++LYGLKQAPR   S +    KL D+  Q     T L+      + +F+   +  I
Sbjct: 879  CKLDKALYGLKQAPRAWYSRLSK--KLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDI 936

Query: 1142 L---SLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLL 972
            +   S Q  +P               LK L     FL ++    S G+ L+Q +Y +DLL
Sbjct: 937  IVTSSRQEAVP----ALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLL 992

Query: 971  IRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAYAVNK 798
             R  +   KP+  PLSTS  +  +    L  +DA+ YRS+VGALQYLT TRPD+A+ VNK
Sbjct: 993  RRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNK 1052

Query: 797  VCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRS 618
            VCQF+HAPT  HW  VK ILRYLK     G+ L  S S+ +S  AY D+DWAGSLDDRRS
Sbjct: 1053 VCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVS--AYSDADWAGSLDDRRS 1110

Query: 617  TSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPP 438
            T G+ V LG N++S SARKQ TVSRSSTE+EY+ LA A AEIMW+Q+LL+EL+V + S  
Sbjct: 1111 TGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMA 1170

Query: 437  VLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPL 258
             LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ + DQ+AD FTK L
Sbjct: 1171 KLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKAL 1230

Query: 257  SKDRFSLLRFKLTV 216
            S  +    ++ L +
Sbjct: 1231 SVRQLENFKYNLNL 1244


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  309 bits (791), Expect = 2e-80
 Identities = 183/371 (49%), Positives = 228/371 (61%), Gaps = 6/371 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 1143
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+       T+FI   +  I
Sbjct: 566  CKLDKALYGLKQAPRAWYSRLS--TKLQELGFISSKADTSLFFYNKGGCTIFILVYVDDI 623

Query: 1142 LSLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 963
            +                      LK L     FL ++    S GL LSQ  Y  D+L RA
Sbjct: 624  IVASSSAE-VVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRA 682

Query: 962  KLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 789
             +   KP   PLST+  +  +    L  +DAS YRSIVGALQYLT TR DL++ VNKVCQ
Sbjct: 683  GMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQ 742

Query: 788  FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 609
            F+H+PT  HW  VK ILRY+K T  FG+    S S+ +S  A+ D+DWAG  DDRRST G
Sbjct: 743  FLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLIS--AFSDADWAGCSDDRRSTGG 800

Query: 608  YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 429
            + V LG N+IS SARKQ TVSRSSTEAEY+ LA A  E+ W++ +L ELR++  S   LW
Sbjct: 801  FAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLW 860

Query: 428  CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLSKD 249
            CDNLGATYL+ NP+FHARTKHIEIDYHFVR+QVA KLLD++FIS+ DQ+AD FTK L   
Sbjct: 861  CDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAP 920

Query: 248  RFSLLRFKLTV 216
              +  R  L +
Sbjct: 921  SLAQYRHNLNL 931


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  307 bits (787), Expect = 5e-80
 Identities = 181/380 (47%), Positives = 236/380 (62%), Gaps = 15/380 (3%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 1155
            CKL ++LYGLKQAPR       +  KL   LQ +        T L+      + +F+   
Sbjct: 888  CKLDKALYGLKQAPRA------WYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVY 941

Query: 1154 MWMIL---SLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYD 984
            +  I+   S Q  +P               LK L     FL ++    SSG+ L+Q++Y 
Sbjct: 942  VDDIIVASSRQDAVP----ALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYV 997

Query: 983  HDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAY 810
             DLL R  +   KP+  PLSTS  +      LL  +DAS YRS+VGALQYLT TRPD+ +
Sbjct: 998  TDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYF 1057

Query: 809  AVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLD 630
             VNKVCQF+HAPT+ HW  +K ILRYLK     G+ +  S S+ +S   Y D+DWAG++D
Sbjct: 1058 PVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKISKSKSMLVS--GYSDADWAGNID 1115

Query: 629  DRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVST 450
            DRRST G+ V LG N++S +A+KQ TV RSSTE+EY+ LA A AEIMWIQ+LL EL  S 
Sbjct: 1116 DRRSTGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEEL--SV 1173

Query: 449  QSPPV--LWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIAD 276
             SPP+  LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR+++  KLL+V FI + DQ+AD
Sbjct: 1174 PSPPMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVAD 1233

Query: 275  IFTKPLSKDRFSLLRFKLTV 216
             FTK LS  +    ++ L V
Sbjct: 1234 GFTKALSARQLENFKYNLNV 1253


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  307 bits (786), Expect = 6e-80
 Identities = 178/382 (46%), Positives = 237/382 (62%), Gaps = 5/382 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV---THLYLSTMAHMTLFICWCMWMIL 1140
            CKL ++LYGLKQAPR   S +     +DL  +     T L+      +T+F+   +  I+
Sbjct: 1085 CKLDKALYGLKQAPRAWFSRLSKKL-MDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDII 1143

Query: 1139 SLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRAK 960
             +                    LK L     FL ++     +G+ L+Q +Y +DLL +  
Sbjct: 1144 -VASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVG 1202

Query: 959  LDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQF 786
            +   KP   PLS S  +     +LL   DAS YRS+VGALQYLT TRPD+A++VNKVCQF
Sbjct: 1203 MIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQF 1262

Query: 785  MHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSGY 606
            +HAPT  HW  VK ILRYLK     G+ +  S S  +S   + D+DWAG LDDRRST G+
Sbjct: 1263 LHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVS--GFSDADWAGCLDDRRSTGGF 1320

Query: 605  CV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLWC 426
             + LG N++S +ARKQ TVSRSSTE+EY+ +A A AEIMW+Q+LL+EL + +     +WC
Sbjct: 1321 AIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWC 1380

Query: 425  DNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLSKDR 246
            DNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+S+ DQ+AD FTKPLS   
Sbjct: 1381 DNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVR- 1439

Query: 245  FSLLRFKLTVQDNPLRLREGVS 180
              L  FK  +      LREGVS
Sbjct: 1440 -LLENFKSNLNLVRSGLREGVS 1460


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  306 bits (784), Expect = 1e-79
 Identities = 172/357 (48%), Positives = 226/357 (63%), Gaps = 5/357 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV---THLYLSTMAHMTLFICWCMWMIL 1140
            CKL ++LYGLKQAPR   S +     L L  Q+    T L+      +T+F+   +  I+
Sbjct: 945  CKLDKALYGLKQAPRAWYSRLSNKL-LSLGFQASKADTSLFFYNKGSVTIFVLVYVDDII 1003

Query: 1139 SLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRAK 960
             +                    LK L     FL ++      G+ L+Q +Y  DLL +  
Sbjct: 1004 -VASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVG 1062

Query: 959  LDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQF 786
            +   KPI  PLSTS  +     + L   D ++YRSIVGALQYLT TRPD+A++VNKVCQF
Sbjct: 1063 MSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQF 1122

Query: 785  MHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSGY 606
            +HAPT  HW  VK ILRY+K     G+ +  S S  +S  A+ D+DWAGS+DDR+ST G+
Sbjct: 1123 LHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVS--AFSDADWAGSVDDRKSTGGF 1180

Query: 605  CV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLWC 426
             V LG N++S SARKQ TVSRSSTE+EY+ LA A AE++W+Q LL+E+ + +     LWC
Sbjct: 1181 AVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWC 1240

Query: 425  DNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLS 255
            DNLGA YL+ NPIFHARTKHIE+DYHFVRD+VA KLLD+ ++ + DQ+AD FTKPLS
Sbjct: 1241 DNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLS 1297


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  305 bits (781), Expect = 2e-79
 Identities = 174/371 (46%), Positives = 234/371 (63%), Gaps = 11/371 (2%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSVTHLYLSTMAHMTLFICWCMWMILSLQ 1131
            C L +SLYGLKQ PR   S      +L   LQS+   ++ + A ++LFI       + + 
Sbjct: 1065 CHLQKSLYGLKQRPRAWYS------RLSEKLQSLG--FVPSKADVSLFIYNAHSTAIYIL 1116

Query: 1130 VPI---------PWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHD 978
            V +         P               +K L     FL ++      GL L Q++Y  D
Sbjct: 1117 VYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARD 1176

Query: 977  LLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAV 804
            LL R  ++  KP+  P++TS  + +   TLLS  + ++YRS+VGALQYLT TRPDL+YA+
Sbjct: 1177 LLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAI 1236

Query: 803  NKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDR 624
            N+VCQF+HAPT  HW  VK ILR +++T   G+ +RPS SL LS  A+ D+DWAG  DDR
Sbjct: 1237 NRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLS--AFSDADWAGCPDDR 1294

Query: 623  RSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQS 444
            +ST GY + LG N+IS +++KQ TVSRSSTEAEY+ +A A AE++W+QSLL EL +    
Sbjct: 1295 KSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTG 1354

Query: 443  PPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTK 264
             P LWCDNLGATYL+  PIF+ARTKHIE+D+HFVRD+V  K LD+R IS+ DQ+AD FTK
Sbjct: 1355 IPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTK 1414

Query: 263  PLSKDRFSLLR 231
             L+  R +  R
Sbjct: 1415 ALTIGRLNEFR 1425


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  304 bits (778), Expect = 5e-79
 Identities = 182/362 (50%), Positives = 232/362 (64%), Gaps = 11/362 (3%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKL-DLLLQSV---THLYLSTMAHMTLFICWCMWMI 1143
            CKL ++LYGLKQAPR   S +    KL DL  Q     T L+      + +F+   +  I
Sbjct: 1079 CKLDKALYGLKQAPRAWYSRLSK--KLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDI 1136

Query: 1142 L---SLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLL 972
            +   S Q  +                LK L     FL ++    +  + L+Q +Y  DLL
Sbjct: 1137 IVTSSRQEAVS----ALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLL 1192

Query: 971  IRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNK 798
             R  +   KP+  PLSTS  + +    LL   DA+ YRS+VGALQYLT TRPD+A+ VNK
Sbjct: 1193 RRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNK 1252

Query: 797  VCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRS 618
            VCQF+HAPT  HW  VK ILRYLK     G+ L  S S+ +S  AY D+DWAGSLDDRRS
Sbjct: 1253 VCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVS--AYSDADWAGSLDDRRS 1310

Query: 617  TSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPP 438
            T G+ V LG N++S  ARKQ TVSRSSTE+EY+ LA A AEIMW+Q+LL+EL+V  QSPP
Sbjct: 1311 TGGFAVFLGDNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQV--QSPP 1368

Query: 437  V--LWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTK 264
            +  LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ + DQ+AD FTK
Sbjct: 1369 MAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTK 1428

Query: 263  PL 258
             L
Sbjct: 1429 AL 1430


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  303 bits (776), Expect = 9e-79
 Identities = 177/366 (48%), Positives = 232/366 (63%), Gaps = 13/366 (3%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 1155
            CKL ++LYGLKQAPR       +  +L   LQ +        T L+      +T+F+   
Sbjct: 706  CKLDKALYGLKQAPRA------WYARLSQKLQQLGFQGSKADTSLFFYNKQGLTIFVLIY 759

Query: 1154 MWMIL---SLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYD 984
            +  I+   S Q  +                LK L     FL ++    S+G+ L+Q++Y 
Sbjct: 760  VDDIIVASSRQDAV----LTLLQDLQKEFALKDLGDLHYFLGIEVNKISNGIILTQEKYA 815

Query: 983  HDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAY 810
            +DLL R  +   KP+   LSTS  +      LL  +DAS YRS+VGALQYLT TRPD+A+
Sbjct: 816  NDLLKRVGMIDCKPVSASLSTSEKLTLHEGDLLGLNDASNYRSVVGALQYLTLTRPDIAF 875

Query: 809  AVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLD 630
             VNKVCQF+HAPT  HW  VK ILRYLK     G+ +  S S+ +S   Y D+DWAG++D
Sbjct: 876  PVNKVCQFLHAPTTIHWATVKRILRYLKQCTKLGLKISKSKSMLVS--GYSDTDWAGNVD 933

Query: 629  DRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVST 450
            DRRST G+ V LG N++S +ARKQ TVSRSSTE+EY+ LA A AEIMWIQ+LL+EL VS+
Sbjct: 934  DRRSTRGFAVFLGDNLVSWNARKQATVSRSSTESEYKVLANATAEIMWIQTLLAELGVSS 993

Query: 449  QSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIF 270
                 LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR++V  +LL+V F+ + DQ+AD F
Sbjct: 994  PLMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERVQRRLLEVDFVPTGDQVADGF 1053

Query: 269  TKPLSK 252
            TK LS+
Sbjct: 1054 TKALSE 1059


>ref|XP_012084305.1| PREDICTED: uncharacterized protein LOC105643719 [Jatropha curcas]
          Length = 1003

 Score =  301 bits (772), Expect = 3e-78
 Identities = 173/378 (45%), Positives = 229/378 (60%), Gaps = 2/378 (0%)
 Frame = -2

Query: 1331 SIESSMDCKLHRSLYGLKQAPRGTTSSVP-FCCKLDLLLQSV-THLYLSTMAHMTLFICW 1158
            S+     CKL +SLYGL+QAPR     +  F  +L        T L++    ++  FI  
Sbjct: 627  SVHPDYVCKLQKSLYGLRQAPRAWFQRLSNFLLQLGFKASKADTSLFIYQDGNIQCFILV 686

Query: 1157 CMWMILSLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHD 978
             +  IL L                    ++ L     FL ++   TS G+ LSQQ+Y  D
Sbjct: 687  YVDDIL-LTCSDFSKLEFFLHALKSAFPVRDLGRLTYFLGIEVIPTSHGILLSQQKYVRD 745

Query: 977  LLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLSDASEYRSIVGALQYLTFTRPDLAYAVNK 798
            LL++  ++  KP   P++T+  +      +L+ A ++R +VG LQY+T TRPD+++AVNK
Sbjct: 746  LLLQFNMNDSKPTLTPMATTPPLSKHGDEILATADQFRKLVGTLQYVTLTRPDVSFAVNK 805

Query: 797  VCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRS 618
            + QFMH PT  HW   K +LRYL  T + G+FL  S    +S   + DSDWAG  DDR+S
Sbjct: 806  LAQFMHHPTAAHWIAAKRLLRYLHGTASMGLFL--SIDSPISLQCFSDSDWAGCPDDRKS 863

Query: 617  TSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPP 438
            TSGY + LG N+IS S++KQ TV+RSSTE+EYR +A A +EIMWI SLLSEL VS   P 
Sbjct: 864  TSGYAIYLGNNLISWSSKKQSTVARSSTESEYRSIAHATSEIMWILSLLSELGVSV-LPA 922

Query: 437  VLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPL 258
             LWCDN+GA YLT NP+FHARTKHIE+D HFVRDQV  K + ++FIS +DQIADI TKPL
Sbjct: 923  TLWCDNIGAIYLTSNPVFHARTKHIELDVHFVRDQVQHKKIQIKFISGQDQIADIMTKPL 982

Query: 257  SKDRFSLLRFKLTVQDNP 204
                F   R KL +Q  P
Sbjct: 983  GSRLFLRHRDKLRLQAPP 1000


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  300 bits (769), Expect = 6e-78
 Identities = 171/371 (46%), Positives = 233/371 (62%), Gaps = 6/371 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 1143
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+      +T+F+   +  I
Sbjct: 1063 CKLDKALYGLKQAPRAWYSRLSG--KLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDI 1120

Query: 1142 LSLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 963
            + +                    LK L     FL ++      G+ +SQ++Y  DLL R 
Sbjct: 1121 IVVSSRKE-AVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRV 1179

Query: 962  KLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 789
             +   K +  PLS S  + + + T+L  +DA++YRSIVGALQYLT TR D+A++VNKVCQ
Sbjct: 1180 NMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQ 1239

Query: 788  FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 609
            F+H PT  HW  VK ILRY+K     G+ +  SSS+ +S   Y D+DWAG LDDRRST G
Sbjct: 1240 FLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVS--GYSDADWAGCLDDRRSTGG 1297

Query: 608  YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 429
            + V LG N++S +A+KQ TVSRSSTEAEY+ LA A AEIMW+Q+LL EL + + +   LW
Sbjct: 1298 FAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLW 1357

Query: 428  CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLSKD 249
            CDN+GA YL+ NP+FHARTKHIE+DYHFVR++VA KLL V ++S+ DQ+AD FTK L   
Sbjct: 1358 CDNMGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVK 1417

Query: 248  RFSLLRFKLTV 216
            +    ++ L +
Sbjct: 1418 QLENFKYNLNL 1428


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  299 bits (766), Expect = 1e-77
 Identities = 168/358 (46%), Positives = 227/358 (63%), Gaps = 6/358 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 1143
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+      + +F+   +  I
Sbjct: 1077 CKLDKALYGLKQAPRAWYSRLSK--KLVELGFEASKADTSLFFLNKGGILMFVLVYVDDI 1134

Query: 1142 LSLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 963
            + +                    LK L     FL ++    S+G+ L+Q++Y +DLL R 
Sbjct: 1135 I-VASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRV 1193

Query: 962  KLDGVKPIQIPLSTSGDI--YSDRSTLLSDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 789
             +   KP+  PLS S  +  Y       +DA +YRSIVGALQYLT TRPD+AY+VNKVCQ
Sbjct: 1194 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1253

Query: 788  FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 609
            F+HAPT  HW  VK ILRYL    + G+ +  S+S  +  + Y D+DWAGS+DDR+ST G
Sbjct: 1254 FLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLV--HGYSDADWAGSIDDRKSTGG 1311

Query: 608  YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 429
            + V LG N++S SARKQ TVSRSSTEAEY+ +A   AE++W+Q+LL EL + +     +W
Sbjct: 1312 FAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIW 1371

Query: 428  CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLS 255
            CDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ S DQ+AD FTK LS
Sbjct: 1372 CDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS 1429


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  299 bits (765), Expect = 2e-77
 Identities = 171/371 (46%), Positives = 230/371 (61%), Gaps = 6/371 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 1143
            CKL ++LYGLKQAPR   S +    KL  L     +S T L+  +   + +F+   +  I
Sbjct: 1062 CKLDKALYGLKQAPRAWYSRLS--TKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDI 1119

Query: 1142 LSLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 963
            +     I                LK L     FL ++    ++G+ L+Q++Y  D+L R 
Sbjct: 1120 IVASSSID-ATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRV 1178

Query: 962  KLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 789
             +   K +  PLS S  + +         D++ YRS+VGALQYLT TRPDL+++VNKVCQ
Sbjct: 1179 NMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQ 1238

Query: 788  FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 609
            ++HAPT  HW   K ILRYLK+T   G+ +  S+SL +S  A+ D+DWAG LDDR ST G
Sbjct: 1239 YLHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVS--AFSDADWAGCLDDRHSTGG 1296

Query: 608  YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 429
            + V +G N++S SARKQ TVSRSSTEAEY+ LA   AEIMWIQ+LL EL +       +W
Sbjct: 1297 FAVFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVW 1356

Query: 428  CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLSKD 249
            CDN+GA Y+T NP+FHARTKHIE+DYHFVR++VA K L V +IS+KDQ+AD FTK LS  
Sbjct: 1357 CDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVR 1416

Query: 248  RFSLLRFKLTV 216
            +  + R  L +
Sbjct: 1417 QLEMFRNNLNL 1427


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  298 bits (762), Expect = 4e-77
 Identities = 167/358 (46%), Positives = 227/358 (63%), Gaps = 6/358 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 1143
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+      + +F+   +  I
Sbjct: 1068 CKLDKALYGLKQAPRAWYSRLSK--KLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDI 1125

Query: 1142 LSLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 963
            + +                    LK L     FL ++     +G+ L+Q++Y +DLL R 
Sbjct: 1126 I-IASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRV 1184

Query: 962  KLDGVKPIQIPLSTSGDI--YSDRSTLLSDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 789
             +   KP+  PLS S  +  Y       +DA++YRSIVGALQYLT TRPD+AY+VNKVCQ
Sbjct: 1185 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1244

Query: 788  FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 609
            F+HAPT  HW  VK ILRYL    + G+ +  S+S  +  + Y D+DWAGS+DDR+ST G
Sbjct: 1245 FLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSASTLV--HGYSDADWAGSVDDRKSTGG 1302

Query: 608  YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 429
            + V LG N++S SARKQ TVSRSSTEAEY+ +A   AE++W+Q+LL EL + +     +W
Sbjct: 1303 FAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIW 1362

Query: 428  CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLS 255
            CDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ S DQ+AD FTK LS
Sbjct: 1363 CDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS 1420


>ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513, partial [Sorghum bicolor]
            gi|241942867|gb|EES16012.1| hypothetical protein
            SORBIDRAFT_08g015513, partial [Sorghum bicolor]
          Length = 757

 Score =  295 bits (755), Expect = 3e-76
 Identities = 173/365 (47%), Positives = 226/365 (61%), Gaps = 5/365 (1%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRG---TTSSVPFCCKLDLLLQSVTHLYLSTMAHMTLFICWCMWMIL 1140
            CKL ++LY LKQAPR      SS     +        +  Y +   H T+F+   +  I+
Sbjct: 397  CKLEKALYELKQAPRAWYARLSSKLISLRFKSSRADTSLFYYNKGGH-TIFVLVYVDDII 455

Query: 1139 SLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRAK 960
                 +                LK L     FL ++    S+GL LSQ +Y +D+L+R+ 
Sbjct: 456  VASSSLE-ATKVLLSDLQKDFALKDLGDLHYFLGIEVKRDSNGLVLSQGKYANDILVRSG 514

Query: 959  LDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQF 786
            +   KP+  PL ++  I       L   D + YRS+VGALQYLT TRPD+++AVNKVCQF
Sbjct: 515  MSKSKPVHTPLPSTQKISITDGDKLGEEDCTRYRSLVGALQYLTLTRPDISFAVNKVCQF 574

Query: 785  MHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSGY 606
            +HAPT  H   VK ILRY++ T  FG+ +R S    +S  +Y  +DWAG +DDRRST G+
Sbjct: 575  LHAPTTTHLSAVKRILRYIQGTSKFGLRIRKSKCRIVSAFSY--ADWAGDVDDRRSTGGF 632

Query: 605  CV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLWC 426
             V LG N+IS +A+KQ TVSRSSTEAEY+ LA A AE+MW+Q LL+EL V       LWC
Sbjct: 633  AVFLGENLISWTAQKQATVSRSSTEAEYKALANATAEVMWVQKLLAELCVPHARVARLWC 692

Query: 425  DNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQIADIFTKPLSKDR 246
            DNLGA YL+ NP+FHARTKHIEID+HFVR++VA KLLD+RFISS+DQ+AD FTK L   +
Sbjct: 693  DNLGAKYLSANPVFHARTKHIEIDFHFVRERVAQKLLDIRFISSEDQLADGFTKSLPVTK 752

Query: 245  FSLLR 231
            F   R
Sbjct: 753  FHKFR 757


>gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
            sativa Japonica Group]
          Length = 1150

 Score =  292 bits (747), Expect = 2e-75
 Identities = 165/352 (46%), Positives = 218/352 (61%), Gaps = 10/352 (2%)
 Frame = -2

Query: 1310 CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 1155
            CKL ++LYGLKQAPR   S      +L + LQ +        T L+      +T+F+   
Sbjct: 695  CKLDKALYGLKQAPRAWYS------RLSMKLQQLGFSPSKADTSLFFYRKGSVTIFVLVY 748

Query: 1154 MWMILSLQVPIPWXXXXXXXXXXXXXXLKILAPCLIFLELKRFCTSSGLFLSQQRYDHDL 975
            +  I                         +      FL ++    S GL LSQ +Y HD+
Sbjct: 749  VDDITVASSSQDAVSSLLHNLKMDFALKDLGDLNYYFLGIEVKKISDGLVLSQDKYTHDI 808

Query: 974  LIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVN 801
            L R  +   KP   PLSTS  +     +LL   DA+ YRSIVGALQYLT TRPD+A+++N
Sbjct: 809  LKRIGMSTCKPAPTPLSTSEKLSVQEGSLLGPGDATNYRSIVGALQYLTLTRPDIAFSIN 868

Query: 800  KVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRR 621
            KVCQF+H+PT+ HW  VK I+RYL+ T   G+ ++ S S+ +  NA+ D+DWAG +DDRR
Sbjct: 869  KVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSMLV--NAFSDADWAGCVDDRR 926

Query: 620  STSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSP 441
            STSG+ V LG N+IS S RKQ TVSRSSTEAEY+ LA A AE++W+Q+LL EL +   S 
Sbjct: 927  STSGFAVFLGSNLISWSVRKQATVSRSSTEAEYKALANATAEVIWVQTLLKELGIQCPSM 986

Query: 440  PVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVAFKLLDVRFISSKDQ 285
              LWCDNLGATYL+ NPIFHARTKHIE+ +HFVR++VA KLL++   S+ D+
Sbjct: 987  ARLWCDNLGATYLSANPIFHARTKHIEVYFHFVRERVAQKLLEIEGASAVDE 1038