BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00037021
         (2706 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010242622.1| PREDICTED: DNA-directed RNA polymerase III s...  1092   0.0  
ref|XP_010242621.1| PREDICTED: DNA-directed RNA polymerase III s...  1087   0.0  
ref|XP_010659064.1| PREDICTED: DNA-directed RNA polymerase III s...  1052   0.0  
ref|XP_004141655.2| PREDICTED: DNA-directed RNA polymerase III s...  1046   0.0  
ref|XP_012068721.1| PREDICTED: DNA-directed RNA polymerase III s...  1043   0.0  
ref|XP_008462447.1| PREDICTED: DNA-directed RNA polymerase III s...  1043   0.0  
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par...  1042   0.0  
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par...  1042   0.0  
ref|XP_011003286.1| PREDICTED: DNA-directed RNA polymerase III s...  1038   0.0  
ref|XP_011003287.1| PREDICTED: DNA-directed RNA polymerase III s...  1038   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1037   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1037   0.0  
ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theob...  1037   0.0  
ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theob...  1037   0.0  
ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theob...  1037   0.0  
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob...  1037   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1036   0.0  
ref|XP_011085923.1| PREDICTED: DNA-directed RNA polymerase III s...  1031   0.0  
ref|XP_010043725.1| PREDICTED: DNA-directed RNA polymerase III s...  1031   0.0  
ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theob...  1023   0.0  

>ref|XP_010242622.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X2
            [Nelumbo nucifera]
          Length = 1140

 Score = 1092 bits (2825), Expect = 0.0
 Identities = 541/685 (78%), Positives = 612/685 (89%), Gaps = 3/685 (0%)
 Frame = -2

Query: 2513 MEVPNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRAN 2334
            M V  +  +DKQF+ASP+K +VDKFQLLPEFLKVRGLVKQHLDS+NYFVN  IKKI+ AN
Sbjct: 1    MVVREDFPVDKQFIASPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVEAN 60

Query: 2333 SLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGL 2154
            + I +S DP  Y++YT+VKIG PSI  D+  D LTPH CRLSD TYAAPI+V+I Y K  
Sbjct: 61   NRITASSDPNFYLKYTDVKIGTPSITADNVTDTLTPHICRLSDMTYAAPIMVNIEYVKKF 120

Query: 2153 KERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVIL 1974
             ++  I++K NV+IGRMP+MLRS  CVL GKDEAELARLGECPLDPGGYF+VKGTEKVIL
Sbjct: 121  CDQITIEKKENVVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVVKGTEKVIL 180

Query: 1973 IQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVV 1794
            IQEQLSKNRIII+TDKKG L ASVTSSTEATKSKT+ILMDK KI+L+LNAF K +PIMVV
Sbjct: 181  IQEQLSKNRIIIDTDKKGCLNASVTSSTEATKSKTIILMDKGKIYLRLNAFVKDIPIMVV 240

Query: 1793 MKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSN- 1617
            MKAMG+ESDQEVVQMVGRDP+Y ALLLPSIQECA   I+ QQQALE+L+ KVKKF+FSN 
Sbjct: 241  MKAMGMESDQEVVQMVGRDPKYGALLLPSIQECAGHGIYTQQQALEFLEKKVKKFSFSNP 300

Query: 1616 -VNQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNK 1440
             + +EGRA+  LR+VF+ANVPVR+ +FRPKCIY AVM+RRMM+A LNKDA+DDKDYVGNK
Sbjct: 301  ALEKEGRAMDTLRNVFIANVPVRQNNFRPKCIYVAVMMRRMMEAFLNKDAMDDKDYVGNK 360

Query: 1439 RLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLTRDSITQGLERAL 1263
            RLELSGQLISLLFEDLFKTMN E +K +DL L K N +   D + Y+ +DSIT GLERA+
Sbjct: 361  RLELSGQLISLLFEDLFKTMNSEARKSVDLQLAKVNRSVPVDIARYIVKDSITYGLERAI 420

Query: 1262 STGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGML 1083
            STGNWDLKRF+MHRKGMTQVLARLSFIA++GHMTK+SPQFEKSRKVSGPRALQPSQWGML
Sbjct: 421  STGNWDLKRFRMHRKGMTQVLARLSFIATLGHMTKISPQFEKSRKVSGPRALQPSQWGML 480

Query: 1082 CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLV 903
            CPCDTPEGEACGLVKNLALMTHVTTD+EEGPLISLCHSLGVE LELLSAEE+HTPNS+LV
Sbjct: 481  CPCDTPEGEACGLVKNLALMTHVTTDDEEGPLISLCHSLGVEDLELLSAEEIHTPNSYLV 540

Query: 902  IFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIA 723
            IFNGLILGKHRQP++FA+ +RKLRR+GKIGEFVSVYVN++QRCVYIASDGGRVCRPLVIA
Sbjct: 541  IFNGLILGKHRQPKQFANALRKLRRSGKIGEFVSVYVNERQRCVYIASDGGRVCRPLVIA 600

Query: 722  DKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEI 543
            DKG+SRIKEHHM+E+ DGVR+FNDFLREGLIEYLDVNE+NNALIALYEGE +   THIEI
Sbjct: 601  DKGVSRIKEHHMKELMDGVRSFNDFLREGLIEYLDVNEENNALIALYEGEAEPETTHIEI 660

Query: 542  EPFTILGVCAGLIPFPHHNQSPRNT 468
            EPFTILGVCAGLIP+PHHNQSPRNT
Sbjct: 661  EPFTILGVCAGLIPYPHHNQSPRNT 685



 Score =  202 bits (513), Expect = 2e-48
 Identities = 102/127 (80%), Positives = 112/127 (88%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 710  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 769

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+KK  AI Q+Y N+T DRI RP +  V  +  K+LD DGIAAPGEIIRP+DIY+NKE
Sbjct: 770  CIVMKKLSAINQRYPNDTSDRIIRPQK--VRSNAEKILDADGIAAPGEIIRPHDIYINKE 827

Query: 58   VPMNTKD 38
             P+NT+D
Sbjct: 828  TPVNTRD 834


>ref|XP_010242621.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X1
            [Nelumbo nucifera]
          Length = 1142

 Score = 1087 bits (2812), Expect = 0.0
 Identities = 541/687 (78%), Positives = 612/687 (89%), Gaps = 5/687 (0%)
 Frame = -2

Query: 2513 MEVPNNLQIDKQFLASPIKKSVDKFQLLPEFLK--VRGLVKQHLDSYNYFVNTEIKKIIR 2340
            M V  +  +DKQF+ASP+K +VDKFQLLPEFLK  VRGLVKQHLDS+NYFVN  IKKI+ 
Sbjct: 1    MVVREDFPVDKQFIASPVKSAVDKFQLLPEFLKLQVRGLVKQHLDSFNYFVNIGIKKIVE 60

Query: 2339 ANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTK 2160
            AN+ I +S DP  Y++YT+VKIG PSI  D+  D LTPH CRLSD TYAAPI+V+I Y K
Sbjct: 61   ANNRITASSDPNFYLKYTDVKIGTPSITADNVTDTLTPHICRLSDMTYAAPIMVNIEYVK 120

Query: 2159 GLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKV 1980
               ++  I++K NV+IGRMP+MLRS  CVL GKDEAELARLGECPLDPGGYF+VKGTEKV
Sbjct: 121  KFCDQITIEKKENVVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVVKGTEKV 180

Query: 1979 ILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIM 1800
            ILIQEQLSKNRIII+TDKKG L ASVTSSTEATKSKT+ILMDK KI+L+LNAF K +PIM
Sbjct: 181  ILIQEQLSKNRIIIDTDKKGCLNASVTSSTEATKSKTIILMDKGKIYLRLNAFVKDIPIM 240

Query: 1799 VVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFS 1620
            VVMKAMG+ESDQEVVQMVGRDP+Y ALLLPSIQECA   I+ QQQALE+L+ KVKKF+FS
Sbjct: 241  VVMKAMGMESDQEVVQMVGRDPKYGALLLPSIQECAGHGIYTQQQALEFLEKKVKKFSFS 300

Query: 1619 N--VNQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVG 1446
            N  + +EGRA+  LR+VF+ANVPVR+ +FRPKCIY AVM+RRMM+A LNKDA+DDKDYVG
Sbjct: 301  NPALEKEGRAMDTLRNVFIANVPVRQNNFRPKCIYVAVMMRRMMEAFLNKDAMDDKDYVG 360

Query: 1445 NKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLTRDSITQGLER 1269
            NKRLELSGQLISLLFEDLFKTMN E +K +DL L K N +   D + Y+ +DSIT GLER
Sbjct: 361  NKRLELSGQLISLLFEDLFKTMNSEARKSVDLQLAKVNRSVPVDIARYIVKDSITYGLER 420

Query: 1268 ALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWG 1089
            A+STGNWDLKRF+MHRKGMTQVLARLSFIA++GHMTK+SPQFEKSRKVSGPRALQPSQWG
Sbjct: 421  AISTGNWDLKRFRMHRKGMTQVLARLSFIATLGHMTKISPQFEKSRKVSGPRALQPSQWG 480

Query: 1088 MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSF 909
            MLCPCDTPEGEACGLVKNLALMTHVTTD+EEGPLISLCHSLGVE LELLSAEE+HTPNS+
Sbjct: 481  MLCPCDTPEGEACGLVKNLALMTHVTTDDEEGPLISLCHSLGVEDLELLSAEEIHTPNSY 540

Query: 908  LVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLV 729
            LVIFNGLILGKHRQP++FA+ +RKLRR+GKIGEFVSVYVN++QRCVYIASDGGRVCRPLV
Sbjct: 541  LVIFNGLILGKHRQPKQFANALRKLRRSGKIGEFVSVYVNERQRCVYIASDGGRVCRPLV 600

Query: 728  IADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHI 549
            IADKG+SRIKEHHM+E+ DGVR+FNDFLREGLIEYLDVNE+NNALIALYEGE +   THI
Sbjct: 601  IADKGVSRIKEHHMKELMDGVRSFNDFLREGLIEYLDVNEENNALIALYEGEAEPETTHI 660

Query: 548  EIEPFTILGVCAGLIPFPHHNQSPRNT 468
            EIEPFTILGVCAGLIP+PHHNQSPRNT
Sbjct: 661  EIEPFTILGVCAGLIPYPHHNQSPRNT 687



 Score =  202 bits (513), Expect = 2e-48
 Identities = 102/127 (80%), Positives = 112/127 (88%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 712  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 771

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+KK  AI Q+Y N+T DRI RP +  V  +  K+LD DGIAAPGEIIRP+DIY+NKE
Sbjct: 772  CIVMKKLSAINQRYPNDTSDRIIRPQK--VRSNAEKILDADGIAAPGEIIRPHDIYINKE 829

Query: 58   VPMNTKD 38
             P+NT+D
Sbjct: 830  TPVNTRD 836


>ref|XP_010659064.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera] gi|731414225|ref|XP_010659065.1| PREDICTED:
            DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1157

 Score = 1052 bits (2720), Expect(2) = 0.0
 Identities = 522/679 (76%), Positives = 596/679 (87%), Gaps = 3/679 (0%)
 Frame = -2

Query: 2495 LQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLIQSS 2316
            + I K F A P+K++VDKF LLPEFLKVRGLVKQHLDS+NYFV T+IKKI+RAN  I SS
Sbjct: 22   MSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSS 81

Query: 2315 IDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKERREI 2136
            +DP  Y+R+ +V+IG+PSI +D   + L PH CRLSD TYAAPILV+I Y  G   ++  
Sbjct: 82   VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 141

Query: 2135 KQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQEQLS 1956
             +K +V+IGRMP+MLRS  CVL  KDEAELARLGECPLDPGGYF+VKGTEKVILIQEQLS
Sbjct: 142  VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLS 201

Query: 1955 KNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVVMKAMGI 1776
            KNRIII+TDKKG++ ASVTSSTE+TKSKTVI+M+KEKI+LQLN F   +PIM+VMKAMG+
Sbjct: 202  KNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGM 261

Query: 1775 ESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSN--VNQEG 1602
            ESDQEVVQMVGR+PRY+ALLLPS++ECA+  I+ QQQALE+L+ KVKK  F N  + +EG
Sbjct: 262  ESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEG 321

Query: 1601 RALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRLELSG 1422
            R ++ILRD F+ANVPVR+ +FRPKC+Y AVMLRRMMDAILNKDA+DDKDYVGNKRLELSG
Sbjct: 322  RGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSG 381

Query: 1421 QLISLLFEDLFKTMNGEVKKQMDLALTKNLARS-FDNSNYLTRDSITQGLERALSTGNWD 1245
            QLISLLFEDLFKTM  EVKK +D  L K    S FD S ++ RDSIT GLER LSTGNWD
Sbjct: 382  QLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQFIVRDSITVGLERTLSTGNWD 441

Query: 1244 LKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 1065
            +KRF+MHRKGM+QV+ARLS+I S+GHMTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTP
Sbjct: 442  VKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTP 501

Query: 1064 EGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIFNGLI 885
            EGEACGLVKNLALMTHVTTDEEE PLISLC+SLGVE LELLS EELHTPNSFL+IFNGLI
Sbjct: 502  EGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFNGLI 561

Query: 884  LGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADKGISR 705
            LGKHR+PQRFA+ +RKLRRAGKIGEFVSV+VN+KQ CVYIASDGGRVCRP+VIADKG SR
Sbjct: 562  LGKHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSR 621

Query: 704  IKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEPFTIL 525
            IKEHHM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYE + K   THIEIEPFTIL
Sbjct: 622  IKEHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTIL 681

Query: 524  GVCAGLIPFPHHNQSPRNT 468
            GVCAGLIPFPHHNQSPRNT
Sbjct: 682  GVCAGLIPFPHHNQSPRNT 700



 Score =  201 bits (510), Expect(2) = 0.0
 Identities = 99/126 (78%), Positives = 111/126 (88%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 725  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 784

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+KK  A+ Q+Y NN  DRI RP + G D  +M++LD+DG+AAPGEII+P DIY+NKE
Sbjct: 785  CIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQILDDDGLAAPGEIIKPNDIYINKE 844

Query: 58   VPMNTK 41
             P+ TK
Sbjct: 845  SPIITK 850


>ref|XP_004141655.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis
            sativus]
          Length = 1158

 Score = 1046 bits (2705), Expect(2) = 0.0
 Identities = 524/683 (76%), Positives = 598/683 (87%), Gaps = 4/683 (0%)
 Frame = -2

Query: 2504 PNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLI 2325
            P +  IDKQF+  PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVNTEIKKI++AN  I
Sbjct: 21   PIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRI 80

Query: 2324 QSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKER 2145
            +SS DP  Y+R+ +V+IG+PS+ ++   + + PH CRLSD TYAAPILVDI Y +    +
Sbjct: 81   ESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEESHAQ 140

Query: 2144 REIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQE 1965
            +  ++K +V+IGRMP+MLRSR CVL GKDEAELARLGECPLDPGGYFI+KGTEKV+LIQE
Sbjct: 141  KAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVLIQE 200

Query: 1964 QLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKP-VPIMVVMK 1788
            QLSKNRIII+TDKKG++ ASVTSSTEATKSKTVI M+ EKI+LQLN F  P +PIMVV+K
Sbjct: 201  QLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMVVLK 260

Query: 1787 AMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSNV-- 1614
            AMG+ES QEVVQMVGRDPRY ALLLPSI+ECA E I+ Q+QALEYL+ KVKKF F++   
Sbjct: 261  AMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFASAPP 320

Query: 1613 NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRL 1434
             +EGRAL ILRDVFLANVPV + +F PKCIY AVM+RRMMDAIL+KDA+DDKDYVGNKRL
Sbjct: 321  EKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNKRL 380

Query: 1433 ELSGQLISLLFEDLFKTMNGEVKKQMDLALTKNLARS-FDNSNYLTRDSITQGLERALST 1257
            ELSGQLISLLFEDLFKTM  EVKK +D  L K+   S FD S +L  + I+ GLER LST
Sbjct: 381  ELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLST 440

Query: 1256 GNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCP 1077
            GNWD+KRF+MHRKGM+QVLARLSFI+++GH+T+VSPQFEKSRKVSGPRALQPSQWGMLCP
Sbjct: 441  GNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCP 500

Query: 1076 CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIF 897
            CDTPEGEACGLVKNLALMTHVTTD+EEGPLISLC+ LGVE LELLSAEELHTPNSFLVIF
Sbjct: 501  CDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIF 560

Query: 896  NGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADK 717
            NG ILGKHR+PQ FA+ MR LRRAGKIGEFVSV+VN+KQ CVYIASDGGRVCRPLVIADK
Sbjct: 561  NGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADK 620

Query: 716  GISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEP 537
            G+SRIKE+HM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYEGE     THIEIEP
Sbjct: 621  GVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEP 680

Query: 536  FTILGVCAGLIPFPHHNQSPRNT 468
            FTILGV AGLIP+PHHNQSPRNT
Sbjct: 681  FTILGVVAGLIPYPHHNQSPRNT 703



 Score =  196 bits (499), Expect(2) = 0.0
 Identities = 99/126 (78%), Positives = 109/126 (86%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 728  LYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 787

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV KK  ++ QKY NNT DRI RP+R       M++LD+DG+AAPGEIIRP DIYVNK+
Sbjct: 788  CIVFKKYSSVNQKYENNTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQ 847

Query: 58   VPMNTK 41
             P+ TK
Sbjct: 848  SPIITK 853


>ref|XP_012068721.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha
            curcas] gi|643733723|gb|KDP40566.1| hypothetical protein
            JCGZ_24565 [Jatropha curcas]
          Length = 1152

 Score = 1043 bits (2698), Expect(2) = 0.0
 Identities = 523/677 (77%), Positives = 596/677 (88%), Gaps = 3/677 (0%)
 Frame = -2

Query: 2489 IDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLIQSSID 2310
            IDKQ L +PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVN  IKKI+RAN  I SS+D
Sbjct: 22   IDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSSLD 81

Query: 2309 PETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKERREIKQ 2130
            P  Y+R+ +V+IG PS+ +D   + L+PH CRL+D TYAAPI+V++ Y +G  +++   +
Sbjct: 82   PGIYLRFKDVRIGTPSVIVDGVSEQLSPHMCRLADMTYAAPIMVNVEYIQGSHDQKTRVE 141

Query: 2129 KVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQEQLSKN 1950
            K +V+IGRMP+MLRSR CVL GKDEAELARLGECPLDPGGYFI+KGTEKVILIQEQLSKN
Sbjct: 142  KNDVVIGRMPIMLRSRGCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVILIQEQLSKN 201

Query: 1949 RIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVVMKAMGIES 1770
            RIII+ DKKG++ ASVTSSTEATKSKT+I M+KEK++L LN F K +PIMVVMKAMG+ES
Sbjct: 202  RIIIDNDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFAKKIPIMVVMKAMGMES 261

Query: 1769 DQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAF--SNVNQEGRA 1596
            DQEVVQM+GRDPRY+ALLLPSI+ECA+ NI+ QQ+ALEYL+ KVK   +  S+  +E RA
Sbjct: 262  DQEVVQMLGRDPRYSALLLPSIEECASLNIYTQQKALEYLEGKVKMPTYFSSSYVKENRA 321

Query: 1595 LSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRLELSGQL 1416
            L ILRDVFLANVPV + +FRPKC+Y AVMLRRMM+A+LNKDA+DDKDYVGNKRLELSGQL
Sbjct: 322  LGILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQL 381

Query: 1415 ISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLTRDSITQGLERALSTGNWDLK 1239
            ISLLFEDLFKTM  EV++ +D  L+K N +  FD + YL RDSIT GLER LSTGN+D+K
Sbjct: 382  ISLLFEDLFKTMITEVQRTIDAVLSKPNRSSRFDLAQYLVRDSITNGLERTLSTGNFDVK 441

Query: 1238 RFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 1059
            RF+MHRKGMTQVL RLSFIAS+G MT+VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 442  RFRMHRKGMTQVLVRLSFIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 501

Query: 1058 EACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIFNGLILG 879
            EACGLVKNLALMTHVTTDEEEGPLISLC+ LGVE LELLS EELHTPNSFLVI NGLILG
Sbjct: 502  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVICNGLILG 561

Query: 878  KHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADKGISRIK 699
            KHR+PQ FA+ +RKLRRAGKIGEFVSV+VN+KQ  VYIASDGGRVCRPLVIADKG+SRIK
Sbjct: 562  KHRRPQHFANALRKLRRAGKIGEFVSVFVNEKQHAVYIASDGGRVCRPLVIADKGVSRIK 621

Query: 698  EHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEPFTILGV 519
            EHHM+E+ DGVRTF+DFLREGLIEYLDVNE+NNALIALYEGE     THIEIEPFTILGV
Sbjct: 622  EHHMKELLDGVRTFDDFLREGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGV 681

Query: 518  CAGLIPFPHHNQSPRNT 468
            CAGLIPFPHHNQSPRNT
Sbjct: 682  CAGLIPFPHHNQSPRNT 698



 Score =  191 bits (484), Expect(2) = 0.0
 Identities = 99/144 (68%), Positives = 115/144 (79%), Gaps = 6/144 (4%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGR
Sbjct: 723  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGR 782

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CI+LKK  A +QKY N  +DRI RP +      K ++LD DG+AAPGEIIR  DIY+NKE
Sbjct: 783  CILLKKYTATIQKYENGAEDRIVRPRK---TEEKERLLDYDGMAAPGEIIRANDIYINKE 839

Query: 58   VPMNTKDNSQ------NIQFKPSY 5
             P+ T+   +      ++++KPSY
Sbjct: 840  CPVETRGPLKSAAALADMKYKPSY 863


>ref|XP_008462447.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis
            melo]
          Length = 1158

 Score = 1043 bits (2696), Expect(2) = 0.0
 Identities = 522/683 (76%), Positives = 597/683 (87%), Gaps = 4/683 (0%)
 Frame = -2

Query: 2504 PNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLI 2325
            P +  IDKQF+  PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVNTEIKKI++AN  I
Sbjct: 21   PIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRI 80

Query: 2324 QSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKER 2145
            +SS DP  Y+R+ +V+IG+PS+ ++   + + PH CRLSD TYAAPILVDI Y +    +
Sbjct: 81   ESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEESHAQ 140

Query: 2144 REIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQE 1965
            +  ++K +V+IGRMP+MLRSR CVL GKDEAELARLGECPLDPGGYFI+KGTEKV+LIQE
Sbjct: 141  KAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVLIQE 200

Query: 1964 QLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKP-VPIMVVMK 1788
            QLSKNRIII+TDKKG++ ASVTSSTEATKSKTVI M+ EKI+LQLN F  P +PIMVV+K
Sbjct: 201  QLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMVVLK 260

Query: 1787 AMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSNV-- 1614
            AMG+ES QEVVQMVGRDPRY ALLLPSI+ECA E I+ Q+QALEYL+ KVKKF F++   
Sbjct: 261  AMGMESVQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFASAPP 320

Query: 1613 NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRL 1434
             +EGRAL ILRDVFLANVPV + +F PKCIY AVM+RRMMDAIL+KDA+DDKDYVGNKRL
Sbjct: 321  EKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNKRL 380

Query: 1433 ELSGQLISLLFEDLFKTMNGEVKKQMDLALTKNLARS-FDNSNYLTRDSITQGLERALST 1257
            ELSGQLISLLFEDLFKTM  EVKK +D  L K+   S FD S +L  + I+ GLER LST
Sbjct: 381  ELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLST 440

Query: 1256 GNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCP 1077
            GNWD+KRF+MHRKGM+QVLARLSFI+++GH+T+VSPQFEKSRKVSGPRALQPSQWGMLCP
Sbjct: 441  GNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCP 500

Query: 1076 CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIF 897
            CDTPEGEACGLVKNLALMTHVTTD+EEGPLISLC+ LGVE LELLSAEELHTPNSFLVIF
Sbjct: 501  CDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIF 560

Query: 896  NGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADK 717
            NG ILGKHR+PQ FA+ MR LRRAGKIGEFVSV+VN+KQ CVYIASDGGRVCRPLVIADK
Sbjct: 561  NGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADK 620

Query: 716  GISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEP 537
            G+SRI+E+HM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYEGE     THIEIEP
Sbjct: 621  GVSRIREYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEP 680

Query: 536  FTILGVCAGLIPFPHHNQSPRNT 468
             TILGV AGLIP+PHHNQSPRNT
Sbjct: 681  LTILGVVAGLIPYPHHNQSPRNT 703



 Score =  196 bits (498), Expect(2) = 0.0
 Identities = 98/126 (77%), Positives = 109/126 (86%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 728  LYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 787

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV KK  ++ QKY NNT DRI RP+R       M++LD+DG+AAPGEIIRP D+YVNK+
Sbjct: 788  CIVFKKYSSVNQKYENNTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDVYVNKQ 847

Query: 58   VPMNTK 41
             P+ TK
Sbjct: 848  SPIITK 853


>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1035

 Score = 1042 bits (2695), Expect(2) = 0.0
 Identities = 528/697 (75%), Positives = 603/697 (86%), Gaps = 5/697 (0%)
 Frame = -2

Query: 2543 VIINTE*SSTMEVPNNLQIDKQ-FLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFV 2367
            V++  +  S   V ++L IDKQ   A+P+K +VDKFQLLPEFLK RGLVKQHLDS+NYF+
Sbjct: 2    VVVQADSLSEENVVDHL-IDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFI 60

Query: 2366 NTEIKKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAP 2187
            N  IKKI+RAN  I S++DP  Y+R+T+VKIG PS+ +D   + +TPH CRLSDTTYAAP
Sbjct: 61   NIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAP 120

Query: 2186 ILVDITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGY 2007
            ILV+I Y  G   R+E   K +V+IGRMP+MLRS  CVL GK+EAELARLGECPLDPGGY
Sbjct: 121  ILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGY 180

Query: 2006 FIVKGTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLN 1827
            F+VKGTEKVILIQEQLSKNRIII+ DKKG++ ASVTSSTEATKSKTVILM+KEK++L LN
Sbjct: 181  FVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLN 240

Query: 1826 AFPKPVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLD 1647
             F K +PIMVVMKAMG+ESDQEVVQMVGRDPRY+ALLLPSI+ECA+  ++ QQQALEYL+
Sbjct: 241  QFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLE 300

Query: 1646 NKVKKFAFSNVN---QEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNK 1476
              VK+  +S+ +   QE RAL+ILRDVF+ANVPVR+ +FRPKCIY AVMLRRMM+A+LNK
Sbjct: 301  AMVKRSTYSSSSTEKQENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNK 360

Query: 1475 DAIDDKDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLT 1299
            DA+DDKDYVGNKRLELSGQLISLLFEDLFKTM  EV+K  D  L K N +  FD S Y+ 
Sbjct: 361  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIV 420

Query: 1298 RDSITQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSG 1119
            RDSIT GLERALSTGNWD+KRF+M+RKG+TQVL RLS++AS+GHMT++SPQFEKSRKVSG
Sbjct: 421  RDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSG 480

Query: 1118 PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLS 939
            PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE PLISLC  LGVE LELLS
Sbjct: 481  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLS 540

Query: 938  AEELHTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIAS 759
             EELHTPNSFLVIFNGLILGKHR+PQ+FA+ MRKLRRAGKIGEFVSV+VN+KQR VYIAS
Sbjct: 541  GEELHTPNSFLVIFNGLILGKHRRPQQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIAS 600

Query: 758  DGGRVCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYE 579
            DGGRVCRPLVIADKG+SRIKEHHM+E+ DG RTF+DFL EGLIEYLDVNE+NNALIALYE
Sbjct: 601  DGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYE 660

Query: 578  GEPKEHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
             E     THIEIEPFTILGV AGLIP+PHHNQSPRNT
Sbjct: 661  WEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNT 697



 Score =  186 bits (473), Expect(2) = 0.0
 Identities = 95/126 (75%), Positives = 105/126 (83%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGR
Sbjct: 722  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGR 781

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIVLKK     QKY N   DRI RP +   +  + +VLD+DG+AAPGEIIR  DIY+NKE
Sbjct: 782  CIVLKKYTCTNQKYENGASDRILRPRK---NEERERVLDDDGLAAPGEIIRHGDIYINKE 838

Query: 58   VPMNTK 41
             P+ T+
Sbjct: 839  SPIETR 844


>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1034

 Score = 1042 bits (2694), Expect(2) = 0.0
 Identities = 527/696 (75%), Positives = 603/696 (86%), Gaps = 4/696 (0%)
 Frame = -2

Query: 2543 VIINTE*SSTMEVPNNLQIDKQ-FLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFV 2367
            V++  +  S   V ++L IDKQ   A+P+K +VDKFQLLPEFLK RGLVKQHLDS+NYF+
Sbjct: 2    VVVQADSLSEENVVDHL-IDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFI 60

Query: 2366 NTEIKKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAP 2187
            N  IKKI+RAN  I S++DP  Y+R+T+VKIG PS+ +D   + +TPH CRLSDTTYAAP
Sbjct: 61   NIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAP 120

Query: 2186 ILVDITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGY 2007
            ILV+I Y  G   R+E   K +V+IGRMP+MLRS  CVL GK+EAELARLGECPLDPGGY
Sbjct: 121  ILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGY 180

Query: 2006 FIVKGTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLN 1827
            F+VKGTEKVILIQEQLSKNRIII+ DKKG++ ASVTSSTEATKSKTVILM+KEK++L LN
Sbjct: 181  FVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLN 240

Query: 1826 AFPKPVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLD 1647
             F K +PIMVVMKAMG+ESDQEVVQMVGRDPRY+ALLLPSI+ECA+  ++ QQQALEYL+
Sbjct: 241  QFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLE 300

Query: 1646 NKVKK--FAFSNVNQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKD 1473
              VK+  ++ S+  +E RAL+ILRDVF+ANVPVR+ +FRPKCIY AVMLRRMM+A+LNKD
Sbjct: 301  AMVKRSTYSSSSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKD 360

Query: 1472 AIDDKDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLTR 1296
            A+DDKDYVGNKRLELSGQLISLLFEDLFKTM  EV+K  D  L K N +  FD S Y+ R
Sbjct: 361  AMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVR 420

Query: 1295 DSITQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGP 1116
            DSIT GLERALSTGNWD+KRF+M+RKG+TQVL RLS++AS+GHMT++SPQFEKSRKVSGP
Sbjct: 421  DSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGP 480

Query: 1115 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSA 936
            RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE PLISLC  LGVE LELLS 
Sbjct: 481  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSG 540

Query: 935  EELHTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASD 756
            EELHTPNSFLVIFNGLILGKHR+PQ+FA+ MRKLRRAGKIGEFVSV+VN+KQR VYIASD
Sbjct: 541  EELHTPNSFLVIFNGLILGKHRRPQQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIASD 600

Query: 755  GGRVCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEG 576
            GGRVCRPLVIADKG+SRIKEHHM+E+ DG RTF+DFL EGLIEYLDVNE+NNALIALYE 
Sbjct: 601  GGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYEW 660

Query: 575  EPKEHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
            E     THIEIEPFTILGV AGLIP+PHHNQSPRNT
Sbjct: 661  EATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNT 696



 Score =  186 bits (473), Expect(2) = 0.0
 Identities = 95/126 (75%), Positives = 105/126 (83%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGR
Sbjct: 721  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGR 780

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIVLKK     QKY N   DRI RP +   +  + +VLD+DG+AAPGEIIR  DIY+NKE
Sbjct: 781  CIVLKKYTCTNQKYENGASDRILRPRK---NEERERVLDDDGLAAPGEIIRHGDIYINKE 837

Query: 58   VPMNTK 41
             P+ T+
Sbjct: 838  SPIETR 843


>ref|XP_011003286.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X1
            [Populus euphratica]
          Length = 1151

 Score = 1038 bits (2685), Expect(2) = 0.0
 Identities = 525/697 (75%), Positives = 603/697 (86%), Gaps = 5/697 (0%)
 Frame = -2

Query: 2543 VIINTE*SSTMEVPNNLQIDKQ-FLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFV 2367
            V++  +  S   V ++L IDKQ   A+P+K +VDKFQLLPEFLKVRGLVKQHLDS+NYF+
Sbjct: 2    VVVQADSLSEENVVDHL-IDKQKHAAAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFI 60

Query: 2366 NTEIKKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAP 2187
            N  IKKI+RAN  I S++DP  Y+R+T+VKIG PS+ +D   + +TPH CRLSDTTYAAP
Sbjct: 61   NIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAP 120

Query: 2186 ILVDITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGY 2007
            I V+I Y  G   R+E   K +V+IGRMP+MLRS  CVL+GK+EAELARLGECPLDPGGY
Sbjct: 121  IWVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLSGKNEAELARLGECPLDPGGY 180

Query: 2006 FIVKGTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLN 1827
            F+VKGTEKVILIQEQLSKNRIII+ DKKG++ ASVTSSTEATKSKTVILM+KEK++L LN
Sbjct: 181  FVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLN 240

Query: 1826 AFPKPVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLD 1647
             F K +PIMVVMKAMG+ESDQEVVQMVGRDPRY+ALLLPSI+ECA+  ++ ++QALEYL+
Sbjct: 241  QFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTREQALEYLE 300

Query: 1646 NKVKKFAFSNVN---QEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNK 1476
              VK+  +S+ +   QE RAL+ILRDVF+ANVPVR+ +FRPKCIY AVMLRRMM+A+LNK
Sbjct: 301  AMVKRSTYSSSSTEKQENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNK 360

Query: 1475 DAIDDKDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLT 1299
            DA+DDKDYVGNKRLELSGQLISLLFEDLFKTM  EV+K  D  L K N +  FD S Y+ 
Sbjct: 361  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKIADALLVKQNRSSRFDFSQYIV 420

Query: 1298 RDSITQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSG 1119
            RDSIT GLERALSTGNWD+KRF+M+RKG+TQVL RLS++AS+GHMT++SPQFEKSRKVSG
Sbjct: 421  RDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSG 480

Query: 1118 PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLS 939
            PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE PLISLC  LGVE LELLS
Sbjct: 481  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLS 540

Query: 938  AEELHTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIAS 759
             EELHTPNSFLVIFNGLILGKHR+P +FA+ MRKLRRAGKIGEFVSV+VN+KQR VYIAS
Sbjct: 541  GEELHTPNSFLVIFNGLILGKHRRPHQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIAS 600

Query: 758  DGGRVCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYE 579
            DGGRVCRPLVIADKG+SRIKEHHM+E+ DG RTF+DFL EGLIEYLDVNE+NNALIALYE
Sbjct: 601  DGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYE 660

Query: 578  GEPKEHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
             E     THIEIEPFTILGV AGLIP+PHHNQSPRNT
Sbjct: 661  WEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNT 697



 Score =  186 bits (473), Expect(2) = 0.0
 Identities = 95/126 (75%), Positives = 105/126 (83%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGR
Sbjct: 722  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGR 781

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIVLKK     QKY N   DRI RP +   +  + +VLD+DG+AAPGEIIR  DIY+NKE
Sbjct: 782  CIVLKKYTCTNQKYENGASDRILRPRK---NEERERVLDDDGLAAPGEIIRHGDIYINKE 838

Query: 58   VPMNTK 41
             P+ T+
Sbjct: 839  SPIETR 844


>ref|XP_011003287.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X2
            [Populus euphratica]
          Length = 1150

 Score = 1038 bits (2684), Expect(2) = 0.0
 Identities = 524/696 (75%), Positives = 603/696 (86%), Gaps = 4/696 (0%)
 Frame = -2

Query: 2543 VIINTE*SSTMEVPNNLQIDKQ-FLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFV 2367
            V++  +  S   V ++L IDKQ   A+P+K +VDKFQLLPEFLKVRGLVKQHLDS+NYF+
Sbjct: 2    VVVQADSLSEENVVDHL-IDKQKHAAAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFI 60

Query: 2366 NTEIKKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAP 2187
            N  IKKI+RAN  I S++DP  Y+R+T+VKIG PS+ +D   + +TPH CRLSDTTYAAP
Sbjct: 61   NIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAP 120

Query: 2186 ILVDITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGY 2007
            I V+I Y  G   R+E   K +V+IGRMP+MLRS  CVL+GK+EAELARLGECPLDPGGY
Sbjct: 121  IWVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLSGKNEAELARLGECPLDPGGY 180

Query: 2006 FIVKGTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLN 1827
            F+VKGTEKVILIQEQLSKNRIII+ DKKG++ ASVTSSTEATKSKTVILM+KEK++L LN
Sbjct: 181  FVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLN 240

Query: 1826 AFPKPVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLD 1647
             F K +PIMVVMKAMG+ESDQEVVQMVGRDPRY+ALLLPSI+ECA+  ++ ++QALEYL+
Sbjct: 241  QFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTREQALEYLE 300

Query: 1646 NKVKK--FAFSNVNQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKD 1473
              VK+  ++ S+  +E RAL+ILRDVF+ANVPVR+ +FRPKCIY AVMLRRMM+A+LNKD
Sbjct: 301  AMVKRSTYSSSSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKD 360

Query: 1472 AIDDKDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLTR 1296
            A+DDKDYVGNKRLELSGQLISLLFEDLFKTM  EV+K  D  L K N +  FD S Y+ R
Sbjct: 361  AMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKIADALLVKQNRSSRFDFSQYIVR 420

Query: 1295 DSITQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGP 1116
            DSIT GLERALSTGNWD+KRF+M+RKG+TQVL RLS++AS+GHMT++SPQFEKSRKVSGP
Sbjct: 421  DSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGP 480

Query: 1115 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSA 936
            RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE PLISLC  LGVE LELLS 
Sbjct: 481  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSG 540

Query: 935  EELHTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASD 756
            EELHTPNSFLVIFNGLILGKHR+P +FA+ MRKLRRAGKIGEFVSV+VN+KQR VYIASD
Sbjct: 541  EELHTPNSFLVIFNGLILGKHRRPHQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIASD 600

Query: 755  GGRVCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEG 576
            GGRVCRPLVIADKG+SRIKEHHM+E+ DG RTF+DFL EGLIEYLDVNE+NNALIALYE 
Sbjct: 601  GGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYEW 660

Query: 575  EPKEHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
            E     THIEIEPFTILGV AGLIP+PHHNQSPRNT
Sbjct: 661  EATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNT 696



 Score =  186 bits (473), Expect(2) = 0.0
 Identities = 95/126 (75%), Positives = 105/126 (83%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGR
Sbjct: 721  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGR 780

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIVLKK     QKY N   DRI RP +   +  + +VLD+DG+AAPGEIIR  DIY+NKE
Sbjct: 781  CIVLKKYTCTNQKYENGASDRILRPRK---NEERERVLDDDGLAAPGEIIRHGDIYINKE 837

Query: 58   VPMNTK 41
             P+ T+
Sbjct: 838  SPIETR 843


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1037 bits (2682), Expect(2) = 0.0
 Identities = 521/685 (76%), Positives = 595/685 (86%), Gaps = 4/685 (0%)
 Frame = -2

Query: 2510 EVPNNLQI-DKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRAN 2334
            E P + Q+ DKQ LA+P+K  VDKFQLLPEFLKVRGLVKQHLDS+NYFVNT I+KI+RAN
Sbjct: 8    ESPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN 67

Query: 2333 SLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGL 2154
              I S IDP  ++R+ +V+IG PS+ +D   + L PH CRLSD TYAAPILV+I Y +G 
Sbjct: 68   DRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS 127

Query: 2153 KERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVIL 1974
               +   +K +V+IGR+P+MLRS RCVL GKDEAELARLGECPLDPGGYFI+KGTEKV+L
Sbjct: 128  HTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187

Query: 1973 IQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVV 1794
            IQEQLSKNR+II+TDKKG++ ASVTSSTE  KSKTVI M+K K++L LN F K +PIMVV
Sbjct: 188  IQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247

Query: 1793 MKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSNV 1614
            MKAMG+ESDQEVVQMVGRDPRY+ALLLPSI+ECA  +I+ Q++ALEYL+ KVK+  F + 
Sbjct: 248  MKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307

Query: 1613 --NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNK 1440
              ++EGRA SILRDVFLANVPV   +FRPKC Y AVMLRRM++A+LNKDA+DDKDYVGNK
Sbjct: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367

Query: 1439 RLELSGQLISLLFEDLFKTMNGEVKKQMDLALTKNLARS-FDNSNYLTRDSITQGLERAL 1263
            RLELSGQL+SLLFEDLFKTM  EV+K +D+ L+K    S FD S ++ RDSIT GLER L
Sbjct: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTL 427

Query: 1262 STGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGML 1083
            STGN+D+KRFKMHRKGMTQVLARLSFI ++GHMT+VSPQFEKSRKVSGPRALQPSQWGML
Sbjct: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487

Query: 1082 CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLV 903
            CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC+ LGVE LELLS EELH PNSFLV
Sbjct: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547

Query: 902  IFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIA 723
            IFNGLILGKHR+P+ FA  MRKLRRAGKIGEFVSV+VN+KQRCVYIASDGGRVCRPLVIA
Sbjct: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607

Query: 722  DKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEI 543
            DKGISRIKEHHM+E+ DGVR+F+DFLREGLIEYLDVNE+NNALIALYEG+     THIEI
Sbjct: 608  DKGISRIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667

Query: 542  EPFTILGVCAGLIPFPHHNQSPRNT 468
            EPFTILGV AGLIP+PHHNQSPRNT
Sbjct: 668  EPFTILGVIAGLIPYPHHNQSPRNT 692



 Score =  207 bits (527), Expect(2) = 0.0
 Identities = 100/126 (79%), Positives = 112/126 (88%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+KK  AI QKY N+T DRI RPDR G    +M++LD+DG+AAPGEII+P D+Y+NKE
Sbjct: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGSERMQILDDDGLAAPGEIIKPNDVYINKE 836

Query: 58   VPMNTK 41
             P+ T+
Sbjct: 837  SPLETR 842


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1037 bits (2681), Expect(2) = 0.0
 Identities = 519/676 (76%), Positives = 590/676 (87%), Gaps = 3/676 (0%)
 Frame = -2

Query: 2486 DKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLIQSSIDP 2307
            DKQ LA+P+K  VDKFQLLPEFLKVRGLVKQHLDS+NYFVNT I+KI+RAN  I S IDP
Sbjct: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76

Query: 2306 ETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKERREIKQK 2127
              ++R+ +V+IG PS+ +D   + L PH CRLSD TYAAPILV+I Y +G    +   +K
Sbjct: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 2126 VNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQEQLSKNR 1947
             +V+IGR+P+MLRS RCVL GKDEAELARLGECPLDPGGYFI+KGTEKV+LIQEQLSKNR
Sbjct: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196

Query: 1946 IIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVVMKAMGIESD 1767
            +II+TDKKG++ ASVTSSTE  KSKTVI M+K K++L LN F K +PIMVVMKAMGIESD
Sbjct: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESD 256

Query: 1766 QEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSNV--NQEGRAL 1593
            QEVVQMVGRDPRY+ALLLPSI+ECA  +I+ Q++ALEYL+ KVK+  F +   ++EGRA 
Sbjct: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316

Query: 1592 SILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRLELSGQLI 1413
            SILRDVFLANVPV   +FRPKC Y AVMLRRM++A+LNKDA+DDKDYVGNKRLELSGQL+
Sbjct: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376

Query: 1412 SLLFEDLFKTMNGEVKKQMDLALTKNLARS-FDNSNYLTRDSITQGLERALSTGNWDLKR 1236
            SLLFEDLFKTM  EV+K +D+ L+K    S FD S ++ RDSIT GLER LSTGN+D+KR
Sbjct: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436

Query: 1235 FKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 1056
            FKMHRKGMTQVLARLSFI ++GHMT+VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496

Query: 1055 ACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIFNGLILGK 876
            ACGLVKNLALMTHVTTDEEEGPLISLC+ LGVE LELLS EELH PNSFLVIFNGLILGK
Sbjct: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556

Query: 875  HRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADKGISRIKE 696
            HR+P+ FA  MRKLRRAGKIGEFVSV+VN+KQRCVYIASDGGRVCRPLVIADKGISRIKE
Sbjct: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616

Query: 695  HHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEPFTILGVC 516
            HHM+E+ DGVR+F+DFLREGLIEYLDVNE+NNALIALYEG+     THIEIEPFTILGV 
Sbjct: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676

Query: 515  AGLIPFPHHNQSPRNT 468
            AGLIP+PHHNQSPRNT
Sbjct: 677  AGLIPYPHHNQSPRNT 692



 Score =  207 bits (526), Expect(2) = 0.0
 Identities = 100/126 (79%), Positives = 112/126 (88%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+KK  AI QKY N+T DRI RPDR G    +M++LD+DG+AAPGEII+P D+Y+NKE
Sbjct: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKE 836

Query: 58   VPMNTK 41
             P+ T+
Sbjct: 837  SPLETR 842


>ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
            gi|508727717|gb|EOY19614.1| DNA-directed RNA polymerase
            isoform 6 [Theobroma cacao]
          Length = 1034

 Score = 1037 bits (2681), Expect(2) = 0.0
 Identities = 523/693 (75%), Positives = 601/693 (86%), Gaps = 4/693 (0%)
 Frame = -2

Query: 2534 NTE*SSTMEVPNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEI 2355
            NT  S+  E+P    +DKQ LA+PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVNT I
Sbjct: 13   NTNNSNVSEMP----VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 68

Query: 2354 KKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVD 2175
            KKI+RAN  I S +DP  Y+R+ +V+IG+PS+ I+   + + PH CRLSD TYAAPI V+
Sbjct: 69   KKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVN 128

Query: 2174 ITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVK 1995
            I Y +G   ++   +K +++IGRMP+MLRS  CVL GKDEAELARLGECPLDPGGYF++K
Sbjct: 129  IEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIK 188

Query: 1994 GTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPK 1815
            G EKVILIQEQLSKNRIII+ DKKG++ ASVTSS+EATKSKTVI M+KEKI+L LN F K
Sbjct: 189  GAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVK 248

Query: 1814 PVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVK 1635
             +PIMVVMKAMG+ESDQEVVQMVGRDP Y A+LLPSI+ECA   I+ Q+QALEYL+ KVK
Sbjct: 249  KIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVK 308

Query: 1634 KFAFSNV--NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDD 1461
            +  ++     +EGRALSILRDVFLANVPVR  +FRPKC+Y AVMLRRM++AILNKDA+DD
Sbjct: 309  RVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDD 368

Query: 1460 KDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYL-TRDSI 1287
            KDYVGNKRLELSGQLISLLFEDLFKT   EV+K +DL L+K + + + D S +L +R++I
Sbjct: 369  KDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETI 428

Query: 1286 TQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRAL 1107
            T GLER LSTGN+D+KRFKMHRKGMTQVLARLSFI ++G+MTKVSPQFEKSRKVSGPRAL
Sbjct: 429  TFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRAL 488

Query: 1106 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEEL 927
            QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGPLISLC+ LGVE LELLS EEL
Sbjct: 489  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEEL 548

Query: 926  HTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGR 747
            HTPNSFLVI NGLILGKHR+PQ FA  MRKLRRAGK+GEFVSV+VN+KQRCVYIASDGGR
Sbjct: 549  HTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGR 608

Query: 746  VCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPK 567
            VCRPLVIADKG+SRIKEHHM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYEGE  
Sbjct: 609  VCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEAT 668

Query: 566  EHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
               THIEIEPFTILGVCAGLIP+PHHNQSPRNT
Sbjct: 669  PETTHIEIEPFTILGVCAGLIPYPHHNQSPRNT 701



 Score =  182 bits (463), Expect(2) = 0.0
 Identities = 97/159 (61%), Positives = 111/159 (69%), Gaps = 23/159 (14%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELV-----------------------GYDKLGAGQNATVAVMS 308
            LYLLVYPQRPLLTTRTIELV                       GYDKLGAGQNATVAVMS
Sbjct: 726  LYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVNCLLCFQVGYDKLGAGQNATVAVMS 785

Query: 307  YSGYDIEDAIVMNKSSLDRGFGRCIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKV 128
            YSGYDIEDAIVMNKSSLDRGFGRCIV+K+  A+ QKY     DRI RP R G    +M++
Sbjct: 786  YSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQI 845

Query: 127  LDEDGIAAPGEIIRPYDIYVNKEVPMNTKDNSQNIQFKP 11
            LD+DGIA PGEIIRP DIY+NKE  ++T+ +  + +  P
Sbjct: 846  LDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLP 884


>ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
            gi|508727715|gb|EOY19612.1| DNA-directed RNA polymerase
            isoform 4 [Theobroma cacao]
          Length = 1034

 Score = 1037 bits (2681), Expect(2) = 0.0
 Identities = 523/693 (75%), Positives = 601/693 (86%), Gaps = 4/693 (0%)
 Frame = -2

Query: 2534 NTE*SSTMEVPNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEI 2355
            NT  S+  E+P    +DKQ LA+PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVNT I
Sbjct: 13   NTNNSNVSEMP----VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 68

Query: 2354 KKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVD 2175
            KKI+RAN  I S +DP  Y+R+ +V+IG+PS+ I+   + + PH CRLSD TYAAPI V+
Sbjct: 69   KKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVN 128

Query: 2174 ITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVK 1995
            I Y +G   ++   +K +++IGRMP+MLRS  CVL GKDEAELARLGECPLDPGGYF++K
Sbjct: 129  IEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIK 188

Query: 1994 GTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPK 1815
            G EKVILIQEQLSKNRIII+ DKKG++ ASVTSS+EATKSKTVI M+KEKI+L LN F K
Sbjct: 189  GAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVK 248

Query: 1814 PVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVK 1635
             +PIMVVMKAMG+ESDQEVVQMVGRDP Y A+LLPSI+ECA   I+ Q+QALEYL+ KVK
Sbjct: 249  KIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVK 308

Query: 1634 KFAFSNV--NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDD 1461
            +  ++     +EGRALSILRDVFLANVPVR  +FRPKC+Y AVMLRRM++AILNKDA+DD
Sbjct: 309  RVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDD 368

Query: 1460 KDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYL-TRDSI 1287
            KDYVGNKRLELSGQLISLLFEDLFKT   EV+K +DL L+K + + + D S +L +R++I
Sbjct: 369  KDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETI 428

Query: 1286 TQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRAL 1107
            T GLER LSTGN+D+KRFKMHRKGMTQVLARLSFI ++G+MTKVSPQFEKSRKVSGPRAL
Sbjct: 429  TFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRAL 488

Query: 1106 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEEL 927
            QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGPLISLC+ LGVE LELLS EEL
Sbjct: 489  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEEL 548

Query: 926  HTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGR 747
            HTPNSFLVI NGLILGKHR+PQ FA  MRKLRRAGK+GEFVSV+VN+KQRCVYIASDGGR
Sbjct: 549  HTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGR 608

Query: 746  VCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPK 567
            VCRPLVIADKG+SRIKEHHM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYEGE  
Sbjct: 609  VCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEAT 668

Query: 566  EHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
               THIEIEPFTILGVCAGLIP+PHHNQSPRNT
Sbjct: 669  PETTHIEIEPFTILGVCAGLIPYPHHNQSPRNT 701



 Score =  196 bits (497), Expect(2) = 0.0
 Identities = 97/136 (71%), Positives = 111/136 (81%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 726  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 785

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+K+  A+ QKY     DRI RP R G    +M++LD+DGIA PGEIIRP DIY+NKE
Sbjct: 786  CIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKE 845

Query: 58   VPMNTKDNSQNIQFKP 11
              ++T+ +  + +  P
Sbjct: 846  SSIHTRGSRVSSESLP 861


>ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
            gi|508727713|gb|EOY19610.1| DNA-directed RNA polymerase
            isoform 2 [Theobroma cacao]
          Length = 1011

 Score = 1037 bits (2681), Expect(2) = 0.0
 Identities = 523/693 (75%), Positives = 601/693 (86%), Gaps = 4/693 (0%)
 Frame = -2

Query: 2534 NTE*SSTMEVPNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEI 2355
            NT  S+  E+P    +DKQ LA+PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVNT I
Sbjct: 13   NTNNSNVSEMP----VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 68

Query: 2354 KKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVD 2175
            KKI+RAN  I S +DP  Y+R+ +V+IG+PS+ I+   + + PH CRLSD TYAAPI V+
Sbjct: 69   KKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVN 128

Query: 2174 ITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVK 1995
            I Y +G   ++   +K +++IGRMP+MLRS  CVL GKDEAELARLGECPLDPGGYF++K
Sbjct: 129  IEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIK 188

Query: 1994 GTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPK 1815
            G EKVILIQEQLSKNRIII+ DKKG++ ASVTSS+EATKSKTVI M+KEKI+L LN F K
Sbjct: 189  GAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVK 248

Query: 1814 PVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVK 1635
             +PIMVVMKAMG+ESDQEVVQMVGRDP Y A+LLPSI+ECA   I+ Q+QALEYL+ KVK
Sbjct: 249  KIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVK 308

Query: 1634 KFAFSNV--NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDD 1461
            +  ++     +EGRALSILRDVFLANVPVR  +FRPKC+Y AVMLRRM++AILNKDA+DD
Sbjct: 309  RVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDD 368

Query: 1460 KDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYL-TRDSI 1287
            KDYVGNKRLELSGQLISLLFEDLFKT   EV+K +DL L+K + + + D S +L +R++I
Sbjct: 369  KDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETI 428

Query: 1286 TQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRAL 1107
            T GLER LSTGN+D+KRFKMHRKGMTQVLARLSFI ++G+MTKVSPQFEKSRKVSGPRAL
Sbjct: 429  TFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRAL 488

Query: 1106 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEEL 927
            QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGPLISLC+ LGVE LELLS EEL
Sbjct: 489  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEEL 548

Query: 926  HTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGR 747
            HTPNSFLVI NGLILGKHR+PQ FA  MRKLRRAGK+GEFVSV+VN+KQRCVYIASDGGR
Sbjct: 549  HTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGR 608

Query: 746  VCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPK 567
            VCRPLVIADKG+SRIKEHHM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYEGE  
Sbjct: 609  VCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEAT 668

Query: 566  EHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
               THIEIEPFTILGVCAGLIP+PHHNQSPRNT
Sbjct: 669  PETTHIEIEPFTILGVCAGLIPYPHHNQSPRNT 701



 Score =  196 bits (497), Expect(2) = 0.0
 Identities = 97/136 (71%), Positives = 111/136 (81%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 726  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 785

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+K+  A+ QKY     DRI RP R G    +M++LD+DGIA PGEIIRP DIY+NKE
Sbjct: 786  CIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKE 845

Query: 58   VPMNTKDNSQNIQFKP 11
              ++T+ +  + +  P
Sbjct: 846  SSIHTRGSRVSSESLP 861


>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1037 bits (2681), Expect(2) = 0.0
 Identities = 523/693 (75%), Positives = 601/693 (86%), Gaps = 4/693 (0%)
 Frame = -2

Query: 2534 NTE*SSTMEVPNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEI 2355
            NT  S+  E+P    +DKQ LA+PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVNT I
Sbjct: 13   NTNNSNVSEMP----VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 68

Query: 2354 KKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVD 2175
            KKI+RAN  I S +DP  Y+R+ +V+IG+PS+ I+   + + PH CRLSD TYAAPI V+
Sbjct: 69   KKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVN 128

Query: 2174 ITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVK 1995
            I Y +G   ++   +K +++IGRMP+MLRS  CVL GKDEAELARLGECPLDPGGYF++K
Sbjct: 129  IEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIK 188

Query: 1994 GTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPK 1815
            G EKVILIQEQLSKNRIII+ DKKG++ ASVTSS+EATKSKTVI M+KEKI+L LN F K
Sbjct: 189  GAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVK 248

Query: 1814 PVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVK 1635
             +PIMVVMKAMG+ESDQEVVQMVGRDP Y A+LLPSI+ECA   I+ Q+QALEYL+ KVK
Sbjct: 249  KIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVK 308

Query: 1634 KFAFSNV--NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDD 1461
            +  ++     +EGRALSILRDVFLANVPVR  +FRPKC+Y AVMLRRM++AILNKDA+DD
Sbjct: 309  RVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDD 368

Query: 1460 KDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYL-TRDSI 1287
            KDYVGNKRLELSGQLISLLFEDLFKT   EV+K +DL L+K + + + D S +L +R++I
Sbjct: 369  KDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETI 428

Query: 1286 TQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRAL 1107
            T GLER LSTGN+D+KRFKMHRKGMTQVLARLSFI ++G+MTKVSPQFEKSRKVSGPRAL
Sbjct: 429  TFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRAL 488

Query: 1106 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEEL 927
            QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGPLISLC+ LGVE LELLS EEL
Sbjct: 489  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEEL 548

Query: 926  HTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGR 747
            HTPNSFLVI NGLILGKHR+PQ FA  MRKLRRAGK+GEFVSV+VN+KQRCVYIASDGGR
Sbjct: 549  HTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGR 608

Query: 746  VCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPK 567
            VCRPLVIADKG+SRIKEHHM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYEGE  
Sbjct: 609  VCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEAT 668

Query: 566  EHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
               THIEIEPFTILGVCAGLIP+PHHNQSPRNT
Sbjct: 669  PETTHIEIEPFTILGVCAGLIPYPHHNQSPRNT 701



 Score =  196 bits (497), Expect(2) = 0.0
 Identities = 97/136 (71%), Positives = 111/136 (81%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 726  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 785

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+K+  A+ QKY     DRI RP R G    +M++LD+DGIA PGEIIRP DIY+NKE
Sbjct: 786  CIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKE 845

Query: 58   VPMNTKDNSQNIQFKP 11
              ++T+ +  + +  P
Sbjct: 846  SSIHTRGSRVSSESLP 861


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1036 bits (2679), Expect(2) = 0.0
 Identities = 518/675 (76%), Positives = 592/675 (87%), Gaps = 1/675 (0%)
 Frame = -2

Query: 2489 IDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLIQSSID 2310
            IDKQ L +PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVN  IKKI+RAN  I S++D
Sbjct: 22   IDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVD 81

Query: 2309 PETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKERREIKQ 2130
            P  Y+R+ +V+IG PS  +D   + L+PH CRLSD TYAAPILV++ Y  G  +++   +
Sbjct: 82   PGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVE 141

Query: 2129 KVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQEQLSKN 1950
            K +V+IGRMP+MLRSR CVL GKDEAELARLGECPLDPGGYF++KGTEKVILIQEQLSKN
Sbjct: 142  KNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 201

Query: 1949 RIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVVMKAMGIES 1770
            RIII+TDKKG++ ASVTSSTEATKSKT+I M+KEK++L LN F K +PIMVV+KAMG+ES
Sbjct: 202  RIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGMES 261

Query: 1769 DQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSNVNQEGRALS 1590
            DQEVVQMVGRDPRY+ALLLPSI+ECA  +I+ QQ+ALEYLD K           E RAL+
Sbjct: 262  DQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLDGK-----------ENRALT 310

Query: 1589 ILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRLELSGQLIS 1410
            ILRDVFLANVPV + +FRPKC+Y AVMLRRMM+A+LNKDA+DDKDYVGNKRLELSGQLIS
Sbjct: 311  ILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLIS 370

Query: 1409 LLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYLTRDSITQGLERALSTGNWDLKRF 1233
            LLFEDLFKTM  EV++ +D  LTK N +  FD + Y+ RD+IT GLER LSTGN+D+KRF
Sbjct: 371  LLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRF 430

Query: 1232 KMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 1053
            KMHRKGMTQVL RLS+IAS+G MT+VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA
Sbjct: 431  KMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 490

Query: 1052 CGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIFNGLILGKH 873
            CGLVKNLALMTHVTTD+EEGPLISLC+ LGVE LELLS EELHTPNSFLVIFNGLILGKH
Sbjct: 491  CGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKH 550

Query: 872  RQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADKGISRIKEH 693
            R+PQ F ++MRKLRRAGKIGEFVSV+VN+KQR VY+ASDGGRVCRPLVIAD+G+SRIKEH
Sbjct: 551  RRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRIKEH 610

Query: 692  HMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEPFTILGVCA 513
            HM+E+RDGVRTF+DFLR+GLIEYLDVNE+NNAL+ALYEGE     THIEIEPFTILGVCA
Sbjct: 611  HMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILGVCA 670

Query: 512  GLIPFPHHNQSPRNT 468
            GLIPFPHHNQSPRNT
Sbjct: 671  GLIPFPHHNQSPRNT 685



 Score =  193 bits (491), Expect(2) = 0.0
 Identities = 103/143 (72%), Positives = 117/143 (81%), Gaps = 6/143 (4%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGR
Sbjct: 710  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGR 769

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+KK  AI QKY N   DRI RPDR      + +VLD DG+AAPGEII+P DIYV KE
Sbjct: 770  CIVMKKYPAIRQKYENGASDRILRPDR---TVERERVLDYDGLAAPGEIIKPSDIYVKKE 826

Query: 58   VPMNT----KDNS--QNIQFKPS 8
             P++T    K ++  +NI+++PS
Sbjct: 827  CPIDTMGPVKSSAALENIKYRPS 849


>ref|XP_011085923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2 [Sesamum
            indicum]
          Length = 1152

 Score = 1031 bits (2666), Expect(2) = 0.0
 Identities = 507/679 (74%), Positives = 587/679 (86%), Gaps = 2/679 (0%)
 Frame = -2

Query: 2498 NLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLIQS 2319
            +L IDKQ LA+P+K +VDKFQLLPEFLKVRGLVKQHLDS+NYFV T+IKKI++AN LI S
Sbjct: 17   SLGIDKQALAAPVKNAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITS 76

Query: 2318 SIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKERRE 2139
             IDP  Y+RY +V+IG+PS+ ID   + LTPH+CRLSD TYAAPI V+I Y  G    + 
Sbjct: 77   KIDPSIYLRYKDVRIGEPSVIIDGVTEKLTPHKCRLSDITYAAPIYVNIEYITGSHGSKT 136

Query: 2138 IKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQEQL 1959
             + K +VIIGRMP+MLRS  C+L GKDE ELAR GECPLDPGGYF++KGTEKVILIQEQL
Sbjct: 137  TQMKRDVIIGRMPIMLRSCCCILYGKDEEELARYGECPLDPGGYFVIKGTEKVILIQEQL 196

Query: 1958 SKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVVMKAMG 1779
            SKNRIII+TDKKG + ASVTSSTE TKSKTVI M+KEKI+L LN F   VPIMVV+KAMG
Sbjct: 197  SKNRIIIDTDKKGCVQASVTSSTEMTKSKTVIRMEKEKIYLYLNQFTSKVPIMVVLKAMG 256

Query: 1778 IESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSN-VNQEG 1602
            +ESDQEVVQM+GRDPRY+ LLLPSI++C  E +  Q QALE+L+ KVKK  +S   ++EG
Sbjct: 257  MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQHQALEFLEQKVKKLPYSTPADKEG 316

Query: 1601 RALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRLELSG 1422
            RAL ILRD+FLAN+PVR+ +FRPKCIY AVM+RR+++AILNKDA+DDKDYVGNKRLELSG
Sbjct: 317  RALGILRDIFLANIPVRQNNFRPKCIYVAVMVRRILEAILNKDAMDDKDYVGNKRLELSG 376

Query: 1421 QLISLLFEDLFKTMNGEVKKQMDLALTKNLARS-FDNSNYLTRDSITQGLERALSTGNWD 1245
            QL+SLLFEDLFKTMN E +K +D  L K    S FD S ++ +DSIT GLER LSTGNWD
Sbjct: 377  QLLSLLFEDLFKTMNDEARKTIDTILAKPSRSSRFDISQFIVKDSITVGLERTLSTGNWD 436

Query: 1244 LKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 1065
            +KRF+MHRKGMTQV+ARLS+I ++GHMTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTP
Sbjct: 437  VKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTP 496

Query: 1064 EGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIFNGLI 885
            EGEACGLVKNLALMTHVTTD++EGPLISLC+SLGVE LELLS EELH PNS+L+I NGLI
Sbjct: 497  EGEACGLVKNLALMTHVTTDDDEGPLISLCYSLGVEDLELLSGEELHMPNSYLIILNGLI 556

Query: 884  LGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADKGISR 705
            LGKHR+PQRFA  MRKLRR+GKIGEFVS++VN+KQ  VYIASDGGRVCRPLVIADKG+SR
Sbjct: 557  LGKHRRPQRFAKAMRKLRRSGKIGEFVSIFVNEKQHSVYIASDGGRVCRPLVIADKGVSR 616

Query: 704  IKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEPFTIL 525
            IKEHHM+E++DGVR F+ FL+EGLIEYLDVNE+NNALIALYE    E  THIEIEPFTIL
Sbjct: 617  IKEHHMKELKDGVRNFDSFLKEGLIEYLDVNEENNALIALYEENANERTTHIEIEPFTIL 676

Query: 524  GVCAGLIPFPHHNQSPRNT 468
            G+ AGLIP+PHHNQSPRNT
Sbjct: 677  GIIAGLIPYPHHNQSPRNT 695



 Score =  202 bits (514), Expect(2) = 0.0
 Identities = 97/126 (76%), Positives = 112/126 (88%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            +YLLVYPQRPLLTTRTIELV +DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 720  IYLLVYPQRPLLTTRTIELVRFDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 779

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+KK  A+ QKY N T DRI RP R+G +  +M++LD+DG+AAPGEIIRP+DIY+NKE
Sbjct: 780  CIVIKKMTAVSQKYENGTSDRILRPPREGYEAERMQILDDDGLAAPGEIIRPHDIYINKE 839

Query: 58   VPMNTK 41
             P+ T+
Sbjct: 840  SPIVTR 845


>ref|XP_010043725.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2 [Eucalyptus
            grandis]
          Length = 1152

 Score = 1031 bits (2666), Expect(2) = 0.0
 Identities = 512/681 (75%), Positives = 597/681 (87%), Gaps = 3/681 (0%)
 Frame = -2

Query: 2501 NNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEIKKIIRANSLIQ 2322
            ++  +D + LA+PIK +VDKFQL+PEFLKVRGLVKQHLDS+NYF NTEIKKI+RAN  I 
Sbjct: 8    SHADVDYRKLAAPIKSAVDKFQLVPEFLKVRGLVKQHLDSFNYFANTEIKKIVRANDKIV 67

Query: 2321 SSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVDITYTKGLKERR 2142
            SS+DP  Y+R+ +V+IG+P+  ++  V++L+P +CRL+D TYAAP+LVD+ YTKG     
Sbjct: 68   SSVDPNLYVRFKDVRIGNPTEALEGIVEDLSPQKCRLTDKTYAAPVLVDVEYTKGSHGGY 127

Query: 2141 EIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVKGTEKVILIQEQ 1962
             + +K +V I RMP+MLRS  CVL  KDE ELARLGECPLDPGGYF++KGTEKVILIQEQ
Sbjct: 128  SLLEKNDVTIARMPIMLRSCCCVLFRKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQ 187

Query: 1961 LSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPKPVPIMVVMKAM 1782
            LSKNRIII+TDKKG++ ASVTSSTEATKSKTV++M+K K++LQLN F K +PIM+VMKAM
Sbjct: 188  LSKNRIIIDTDKKGNINASVTSSTEATKSKTVVVMEKGKMYLQLNQFAKNIPIMIVMKAM 247

Query: 1781 GIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVKKFAFSNVN--Q 1608
             +ESDQEVVQM+GRDPRY+ALLL SI+ECA+ +IF QQQALE+L+ K+KK  ++N++  +
Sbjct: 248  RMESDQEVVQMIGRDPRYSALLLQSIEECASLSIFTQQQALEFLEGKLKKLPYANMSTGK 307

Query: 1607 EGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDDKDYVGNKRLEL 1428
            EGRA+SILRDVFLANV V + +FRPKCIY AVMLRRMM+AILNKDA+DDKDYVGNKRLEL
Sbjct: 308  EGRAMSILRDVFLANVRVIKNNFRPKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLEL 367

Query: 1427 SGQLISLLFEDLFKTMNGEVKKQMDLALTKNLARS-FDNSNYLTRDSITQGLERALSTGN 1251
            SGQLISLLFEDLFKTM  EV+KQ D  L+K    S  D S  L +D ITQGLERALSTGN
Sbjct: 368  SGQLISLLFEDLFKTMISEVQKQADNVLSKRSRSSQLDLSMLLVKDIITQGLERALSTGN 427

Query: 1250 WDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCD 1071
            WD+KRF+MHRKGMTQVLARLSFI ++GH+T++SPQFEKSRKVSGPRALQPSQWGMLCPCD
Sbjct: 428  WDVKRFRMHRKGMTQVLARLSFIGTLGHVTRISPQFEKSRKVSGPRALQPSQWGMLCPCD 487

Query: 1070 TPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEELHTPNSFLVIFNG 891
            TPEGEACGLVKNLALMTHVTTD+EEGPLI+LC+ LGVE LELLS EELHTPNSFL+IFNG
Sbjct: 488  TPEGEACGLVKNLALMTHVTTDQEEGPLIALCYCLGVEDLELLSGEELHTPNSFLIIFNG 547

Query: 890  LILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGRVCRPLVIADKGI 711
            LILGKHR+PQRFA+ MRKLRR G+IGEFVSV+VN+KQ CVYIASDGGRVCRPLVIADKGI
Sbjct: 548  LILGKHRRPQRFANTMRKLRRIGRIGEFVSVFVNEKQCCVYIASDGGRVCRPLVIADKGI 607

Query: 710  SRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPKEHITHIEIEPFT 531
            SRIKEHHM+ + DG RTF+DFLREGL+EYLDVNE+NNALIALYE +     THIEIEPFT
Sbjct: 608  SRIKEHHMKGLLDGARTFDDFLREGLVEYLDVNEENNALIALYEQDATPETTHIEIEPFT 667

Query: 530  ILGVCAGLIPFPHHNQSPRNT 468
            ILGVCAGLIPFPHHNQSPRNT
Sbjct: 668  ILGVCAGLIPFPHHNQSPRNT 688



 Score =  201 bits (510), Expect(2) = 0.0
 Identities = 106/152 (69%), Positives = 117/152 (76%), Gaps = 13/152 (8%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIEL GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 713  LYLLVYPQRPLLTTRTIELTGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 772

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRK--------GVDHHKMKVLDEDGIAAPGEIIRP 83
            CIV+KK  A+ QKY N T DRI RP RK          D  +M++LD DGIAAPGEIIRP
Sbjct: 773  CIVMKKYSAVNQKYENGTSDRILRPPRKDDRNKKGENPDWERMQILDNDGIAAPGEIIRP 832

Query: 82   YDIYVNKEVPMNTKDNS-----QNIQFKPSYQ 2
             D+Y+NKE P+ TK N      ++  +KPS Q
Sbjct: 833  NDVYINKESPIITKGNPKLGGLKDSDYKPSRQ 864


>ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
            gi|508727716|gb|EOY19613.1| DNA-directed RNA polymerase
            isoform 5 [Theobroma cacao]
          Length = 1006

 Score = 1023 bits (2644), Expect(2) = 0.0
 Identities = 518/693 (74%), Positives = 596/693 (86%), Gaps = 4/693 (0%)
 Frame = -2

Query: 2534 NTE*SSTMEVPNNLQIDKQFLASPIKKSVDKFQLLPEFLKVRGLVKQHLDSYNYFVNTEI 2355
            NT  S+  E+P    +DKQ LA+PIK +VDKFQLLPEFLKVRGLVKQHLDS+NYFVNT I
Sbjct: 13   NTNNSNVSEMP----VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 68

Query: 2354 KKIIRANSLIQSSIDPETYIRYTNVKIGDPSIEIDHSVDNLTPHRCRLSDTTYAAPILVD 2175
            KKI+RAN  I S +DP  Y+R+ +V+IG+PS+ I+   + + PH CRLSD TYAAPI V+
Sbjct: 69   KKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVN 128

Query: 2174 ITYTKGLKERREIKQKVNVIIGRMPVMLRSRRCVLTGKDEAELARLGECPLDPGGYFIVK 1995
            I Y +G   ++   +K +++IGRMP+MLRS  CVL GKDEAELARLGECPLDPGGYF++K
Sbjct: 129  IEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIK 188

Query: 1994 GTEKVILIQEQLSKNRIIIETDKKGHLVASVTSSTEATKSKTVILMDKEKIFLQLNAFPK 1815
            G EK     EQLSKNRIII+ DKKG++ ASVTSS+EATKSKTVI M+KEKI+L LN F K
Sbjct: 189  GAEK-----EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVK 243

Query: 1814 PVPIMVVMKAMGIESDQEVVQMVGRDPRYAALLLPSIQECATENIFNQQQALEYLDNKVK 1635
             +PIMVVMKAMG+ESDQEVVQMVGRDP Y A+LLPSI+ECA   I+ Q+QALEYL+ KVK
Sbjct: 244  KIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVK 303

Query: 1634 KFAFSNV--NQEGRALSILRDVFLANVPVREQSFRPKCIYAAVMLRRMMDAILNKDAIDD 1461
            +  ++     +EGRALSILRDVFLANVPVR  +FRPKC+Y AVMLRRM++AILNKDA+DD
Sbjct: 304  RVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDD 363

Query: 1460 KDYVGNKRLELSGQLISLLFEDLFKTMNGEVKKQMDLALTK-NLARSFDNSNYL-TRDSI 1287
            KDYVGNKRLELSGQLISLLFEDLFKT   EV+K +DL L+K + + + D S +L +R++I
Sbjct: 364  KDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETI 423

Query: 1286 TQGLERALSTGNWDLKRFKMHRKGMTQVLARLSFIASVGHMTKVSPQFEKSRKVSGPRAL 1107
            T GLER LSTGN+D+KRFKMHRKGMTQVLARLSFI ++G+MTKVSPQFEKSRKVSGPRAL
Sbjct: 424  TFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRAL 483

Query: 1106 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCHSLGVEGLELLSAEEL 927
            QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGPLISLC+ LGVE LELLS EEL
Sbjct: 484  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEEL 543

Query: 926  HTPNSFLVIFNGLILGKHRQPQRFASNMRKLRRAGKIGEFVSVYVNDKQRCVYIASDGGR 747
            HTPNSFLVI NGLILGKHR+PQ FA  MRKLRRAGK+GEFVSV+VN+KQRCVYIASDGGR
Sbjct: 544  HTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGR 603

Query: 746  VCRPLVIADKGISRIKEHHMQEMRDGVRTFNDFLREGLIEYLDVNEQNNALIALYEGEPK 567
            VCRPLVIADKG+SRIKEHHM+E+ DGVRTF+DFLR+GLIEYLDVNE+NNALIALYEGE  
Sbjct: 604  VCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEAT 663

Query: 566  EHITHIEIEPFTILGVCAGLIPFPHHNQSPRNT 468
               THIEIEPFTILGVCAGLIP+PHHNQSPRNT
Sbjct: 664  PETTHIEIEPFTILGVCAGLIPYPHHNQSPRNT 696



 Score =  196 bits (497), Expect(2) = 0.0
 Identities = 97/136 (71%), Positives = 111/136 (81%)
 Frame = -3

Query: 418  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 239
            LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR
Sbjct: 721  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 780

Query: 238  CIVLKKSVAILQKYGNNTQDRIRRPDRKGVDHHKMKVLDEDGIAAPGEIIRPYDIYVNKE 59
            CIV+K+  A+ QKY     DRI RP R G    +M++LD+DGIA PGEIIRP DIY+NKE
Sbjct: 781  CIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKE 840

Query: 58   VPMNTKDNSQNIQFKP 11
              ++T+ +  + +  P
Sbjct: 841  SSIHTRGSRVSSESLP 856