BLASTX nr result
ID: Papaver29_contig00032495
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver29_contig00032495
(512 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|WP_017390434.1| primase [Acinetobacter calcoaceticus] 64 4e-08
ref|WP_019988808.1| hypothetical protein [Rudanella lutea] 60 5e-07
ref|WP_005041447.1| hypothetical protein [Acinetobacter calcoace... 59 1e-06
ref|WP_011524662.1| pseudouridine synthase [Candidatus Koribacte... 59 1e-06
ref|WP_031178368.1| RNA helicase [Streptomyces sp. NRRL B-3253] 57 7e-06
ref|WP_023418181.1| MULTISPECIES: ATP-dependent RNA helicase [St... 57 7e-06
ref|WP_040377400.1| transcription termination factor Rho [Brevib... 56 9e-06
ref|WP_017401534.1| stress-induced protein [Acinetobacter schind... 56 9e-06
>ref|WP_017390434.1| primase [Acinetobacter calcoaceticus]
Length = 475
Score = 63.9 bits (154), Expect = 4e-08
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Frame = -2
Query: 511 RVEGRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVESKFRNDDGNDNRFRS- 335
R GR R+++ D++R R RG + ++ D R+S R + R+DD +D+R R+
Sbjct: 161 RGRGRSRDDDDDDDDRGRSSGRGRGRSRDEDDDDDRGRTSGRGRGRSRDDDDDDDRGRTS 220
Query: 334 -REKPAFKRVAVRGELGGRSYPNRVEGRFRNEEDSDGNNREFRSSRGDVGSENSSFRGKR 158
R + + + GGRS R GR R+++D D R RG ++ RG R
Sbjct: 221 GRGRGRSRDDDDDDDRGGRS-GGRGRGRSRDDDDDDRGGRSGGRGRGRSRDDDDDDRGGR 279
Query: 157 SSGRVESRLRNDDVNDNK 104
S GR R R+DD +D++
Sbjct: 280 SGGRGRGRSRDDDDDDDR 297
Score = 58.2 bits (139), Expect = 2e-06
Identities = 43/136 (31%), Positives = 62/136 (45%)
Frame = -2
Query: 511 RVEGRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVESKFRNDDGNDNRFRSR 332
R GR R+++ D+ R RG + D+ D RSS R + R+DD +D+R
Sbjct: 283 RGRGRSRDDDDDDDRGGRSGGRGRGRSRDDDDDDDRGRSSGRGRGRSRDDDDDDDR---- 338
Query: 331 EKPAFKRVAVRGELGGRSYPNRVEGRFRNEEDSDGNNREFRSSRGDVGSENSSFRGKRSS 152
GGRS R GR R+++D D R RG ++ RSS
Sbjct: 339 --------------GGRS-GGRGHGRSRDDDDDDDRGRSSGRGRGRSRDDDDDDDRGRSS 383
Query: 151 GRVESRLRNDDVNDNK 104
GR SR R+DD +D++
Sbjct: 384 GRGRSRSRDDDDDDDR 399
>ref|WP_019988808.1| hypothetical protein [Rudanella lutea]
Length = 636
Score = 60.5 bits (145), Expect = 5e-07
Identities = 58/171 (33%), Positives = 71/171 (41%), Gaps = 9/171 (5%)
Frame = -2
Query: 511 RVEGRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVESKFRNDD-GNDNRFRS 335
R G F E GSD R R D SD FDG R E F DD G NR
Sbjct: 143 RRSGGFNRESGSDRPRF-----DRNDRRSDGPRFDGPR-----EGGFNRDDKGFGNR--- 189
Query: 334 REKPAFKRVAVRGELGGRSYPNRVEGRFRNEEDSD-------GNNREFRSSRGDVGSENS 176
E+P+F R R + G R EG F D D GN R F +RG E+
Sbjct: 190 GERPSFDRAPRRND-GPR------EGGFNRRNDGDERGPSRFGNERRFNDTRGGDRRESG 242
Query: 175 SFRG-KRSSGRVESRLRNDDVNDNKLWSREKPTFKRVATRAEGGKDGFKNK 26
R +R GR +R +D+ D + R + F R R EGG+ F N+
Sbjct: 243 FDRNNERGEGRSFNRRNDDNRGDGR---RGESRFNRHGDRPEGGRRDFNNR 290
>ref|WP_005041447.1| hypothetical protein [Acinetobacter calcoaceticus]
gi|480054522|gb|ENV93564.1| hypothetical protein
F937_02964 [Acinetobacter calcoaceticus ANC 3680]
Length = 425
Score = 58.9 bits (141), Expect = 1e-06
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Frame = -2
Query: 511 RVEGRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVESKFRNDDGND---NRF 341
R GR R+++ D++R R RG + D+ D R+S R + R+DD +D +R
Sbjct: 109 RGRGRSRDDDDDDDDRGRSSSRGRGRSRDDDDDDDRGRTSGRGRGRSRDDDDDDDRGSRS 168
Query: 340 RSREKPAFKRVAVRGELGGRSYPNRVEGRFRNEEDSDGN-NREFRSSRGDVGSENSSFRG 164
R + + + GGRS R GR R+++D D + R RG ++ RG
Sbjct: 169 GGRGRGRSRDDDDDDDRGGRS-GGRGRGRSRDDDDDDDDRGRTSGRGRGRSRDDDDDDRG 227
Query: 163 KRSSGRVESRLRNDDVNDNK 104
RS GR R R+DD +D++
Sbjct: 228 GRSGGRGRGRSRDDDDDDDR 247
>ref|WP_011524662.1| pseudouridine synthase [Candidatus Koribacter versatilis]
gi|94552939|gb|ABF42863.1| Pseudouridine synthase, Rsu
[Candidatus Koribacter versatilis Ellin345]
Length = 680
Score = 58.9 bits (141), Expect = 1e-06
Identities = 50/153 (32%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Frame = -2
Query: 454 FRSSRGDAGSDNSSFDGKRSSRRVESKFRNDDGNDNRFRSREKPAFKRVAVRGELGGRS- 278
FR R DA + +F GKR R E +D R E+PAF+ A R + G
Sbjct: 349 FRGKRDDARGERPAFRGKRDDARGERPAFRGKRDDAR---SERPAFR--ARRDDQAGDRP 403
Query: 277 -YPNRVEGR---FRNE-EDSDGNNREFRSSRGDVGSENSSFRGKRSSGRVES---RLRND 122
+P R EG FR + +D+ G FR R D E +FRGKR R E R + D
Sbjct: 404 RFPRREEGERPAFRGKRDDARGERPAFRGKRDDARGERPAFRGKRDDARGERPAFRGKRD 463
Query: 121 DVNDNKLWSREKPTFKRVATRAEGGKDGFKNKK 23
D E+P F+ A G + F+ K+
Sbjct: 464 DARG------ERPAFRGKRDDARGERPAFRGKR 490
>ref|WP_031178368.1| RNA helicase [Streptomyces sp. NRRL B-3253]
Length = 761
Score = 56.6 bits (135), Expect = 7e-06
Identities = 49/141 (34%), Positives = 62/141 (43%)
Frame = -2
Query: 511 RVEGRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVESKFRNDDGNDNRFRSR 332
R EG FR ++ + R FR R D G D F R R E FR DD R R
Sbjct: 568 RREGGFRRDDRGGDRREGGFR--RDDRGGDRGGF---RGGDRREGGFRRDD----RGGDR 618
Query: 331 EKPAFKRVAVRGELGGRSYPNRVEGRFRNEEDSDGNNREFRSSRGDVGSENSSFRGKRSS 152
+ F+R G+ GG +R EG FR +D G+ RE R D G + FRG
Sbjct: 619 REGGFRRDDRGGDRGGFRGGDRREGGFR-RDDRGGDRREGGFRRDDRGGDRGGFRG---G 674
Query: 151 GRVESRLRNDDVNDNKLWSRE 89
R E R DD +D + R+
Sbjct: 675 DRREGGFRRDDRDDRGGFRRD 695
>ref|WP_023418181.1| MULTISPECIES: ATP-dependent RNA helicase [Streptomyces]
gi|556916024|gb|ESP98669.1| putative ATP-dependent RNA
helicase [Streptomyces sp. GBA 94-10]
gi|556922561|gb|ESQ05172.1| putative ATP-dependent RNA
helicase [Streptomyces sp. PVA 94-07]
Length = 767
Score = 56.6 bits (135), Expect = 7e-06
Identities = 49/141 (34%), Positives = 62/141 (43%)
Frame = -2
Query: 511 RVEGRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVESKFRNDDGNDNRFRSR 332
R EG FR ++ + R FR R D G D F R R E FR DD R R
Sbjct: 574 RREGGFRRDDRGGDRREGGFR--RDDRGGDRGGF---RGGDRREGGFRRDD----RGGDR 624
Query: 331 EKPAFKRVAVRGELGGRSYPNRVEGRFRNEEDSDGNNREFRSSRGDVGSENSSFRGKRSS 152
+ F+R G+ GG +R EG FR +D G+ RE R D G + FRG
Sbjct: 625 REGGFRRDDRGGDRGGFRGGDRREGGFR-RDDRGGDRREGGFRRDDRGGDRGGFRG---G 680
Query: 151 GRVESRLRNDDVNDNKLWSRE 89
R E R DD +D + R+
Sbjct: 681 DRREGGFRRDDRDDRGGFRRD 701
>ref|WP_040377400.1| transcription termination factor Rho [Brevibacterium massiliense]
Length = 638
Score = 56.2 bits (134), Expect = 9e-06
Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Frame = -2
Query: 511 RVEGRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVES-KFRNDDGNDNRFRS 335
+ +G E+G D+ R R R SRG DNSS D +S K R D+ D++ S
Sbjct: 100 KADGLDSAEQGDDSGRSR--RRSRGGKRGDNSSADASQSGDGQHGDKNRGDNNRDDK--S 155
Query: 334 REKPAFKRVAVRGELGG----RSYPNRVEGRFRNEEDSDGNNR---EFRSSRG------- 197
R+K RG+ G + + N GR R DG+NR + R +RG
Sbjct: 156 RDKNGHNDKGGRGDKNGHDDKQGHKNNKNGRGRKNHGDDGDNRNNGDNRDNRGNDNRDNN 215
Query: 196 --------DVGSENSSFRGKRSSGRVESRLRNDD 119
D G ++++ RG+R GR R R DD
Sbjct: 216 DNRNNRHDDGGRDDNNDRGRRGRGRDRKRRRGDD 249
>ref|WP_017401534.1| stress-induced protein [Acinetobacter schindleri]
Length = 411
Score = 56.2 bits (134), Expect = 9e-06
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Frame = -2
Query: 502 GRFRNEEGSDNNRIREFRSSRGDAGSDNSSFDGKRSSRRVESKFRNDDGNDNRFRSREKP 323
GR R+++ +++R R RG D+ D RSS R + R+DD +D+R RS +
Sbjct: 121 GRSRDDDDDNDDRGRSNGRGRGRNRDDDDDDDRGRSSSRGRGRSRDDDDDDDRGRSSGRG 180
Query: 322 AFK-RVAVRGELGGRSYPNRVEGRFRNEEDSDGNNR---EFRSSRGDVGSENSSFRGKRS 155
+ R + GRS NR GR R+++D D R RS D ++ RG RS
Sbjct: 181 RGRNRDDDDDDDRGRS-SNRGRGRSRDDDDDDDRGRSGGRGRSRSRDDDDDDDDDRG-RS 238
Query: 154 SGRVESRLRNDDVNDNK 104
+GR R R+DD +D++
Sbjct: 239 NGRGRGRNRDDDDDDDR 255