BLASTX nr result
ID: Papaver29_contig00027006
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver29_contig00027006
(1490 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008344782.1| PREDICTED: tubulin beta-2 chain-like [Malus ... 72 4e-12
gb|ABC61498.1| beta tubulin, partial [Thraustochytriidae sp. HU1] 70 6e-12
gb|ABC61499.1| beta tubulin, partial [Thraustochytriidae sp. PW19] 70 6e-12
gb|ABX55840.1| beta-tubulin, partial [Spumella-like flagellate J... 68 9e-12
gb|ABJ81004.1| beta tubulin, partial [Synura sphagnicola] gi|116... 69 1e-11
gb|ABJ81006.1| beta tubulin, partial [Synura sphagnicola] 69 1e-11
gb|ACR46916.1| beta-tubulin [Pinguiococcus pyrenoidosus] 69 1e-11
gb|ABO61447.1| beta tubulin, partial [Paraphysomonas imperforata] 69 2e-11
gb|ABO61446.1| beta tubulin, partial [Paraphysomonas imperforata] 69 2e-11
gb|ABO61448.1| beta tubulin, partial [Paraphysomonas imperforata] 69 2e-11
gb|ABO61470.1| beta tubulin, partial [Chrysophyceae sp. I8] 69 2e-11
gb|ABO61469.1| beta tubulin, partial [Chrysophyceae sp. I8] 69 2e-11
dbj|BAE20248.1| beta-tubulin [Lactuca sativa] 72 2e-11
ref|XP_002292479.1| tubulin beta [Thalassiosira pseudonana CCMP1... 68 2e-11
sp|Q9LKI8.1|TBB_THAWE RecName: Full=Tubulin beta chain; AltName:... 68 2e-11
gb|AAW58087.1| beta-tubulin, partial [Spumella uniguttata] 68 2e-11
gb|AHC92559.1| beta tubulin subunit, partial [Spumella sp. OF-40] 68 2e-11
gb|AHC92558.1| beta tubulin subunit, partial [Spumella sp. OF-40] 68 2e-11
gb|ABO61501.1| beta tubulin, partial [Thalassiosira sp. CCMP1987] 68 2e-11
gb|ABX55843.1| beta-tubulin, partial [Spumella-like flagellate J... 68 2e-11
>ref|XP_008344782.1| PREDICTED: tubulin beta-2 chain-like [Malus domestica]
Length = 228
Score = 71.6 bits (174), Expect(2) = 4e-12
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLNSDL KL VNL+PFPRL++FMV FAPLTS GSQQ R TVP
Sbjct: 25 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 69
Score = 28.9 bits (63), Expect(2) = 4e-12
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 4/23 (17%)
Frame = -1
Query: 227 YSVGGLNHLIC----GVTCCLRY 171
++VG LNH I GVTCCLR+
Sbjct: 2 FTVGDLNHXISATMSGVTCCLRF 24
>gb|ABC61498.1| beta tubulin, partial [Thraustochytriidae sp. HU1]
Length = 352
Score = 70.5 bits (171), Expect(2) = 6e-12
Identities = 33/45 (73%), Positives = 37/45 (82%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLNSDL KL VNLVPFPRL++FM+ F+PLTS GSQQ R TVP
Sbjct: 205 PGQLNSDLRKLAVNLVPFPRLHFFMIGFSPLTSRGSQQYRALTVP 249
Score = 29.6 bits (65), Expect(2) = 6e-12
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHLIC----GVTCCLRY 171
G LNHL+C G TCCLR+
Sbjct: 185 GDLNHLVCAAMSGTTCCLRF 204
>gb|ABC61499.1| beta tubulin, partial [Thraustochytriidae sp. PW19]
Length = 347
Score = 70.5 bits (171), Expect(2) = 6e-12
Identities = 33/45 (73%), Positives = 37/45 (82%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLNSDL KL VNLVPFPRL++FM+ F+PLTS GSQQ R TVP
Sbjct: 206 PGQLNSDLRKLAVNLVPFPRLHFFMIGFSPLTSRGSQQYRALTVP 250
Score = 29.6 bits (65), Expect(2) = 6e-12
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHLIC----GVTCCLRY 171
G LNHL+C G TCCLR+
Sbjct: 186 GDLNHLVCAAMSGTTCCLRF 205
>gb|ABX55840.1| beta-tubulin, partial [Spumella-like flagellate JBM08]
gi|161015569|gb|ABX55841.1| beta-tubulin, partial
[Spumella-like flagellate JBM18]
Length = 297
Score = 68.2 bits (165), Expect(2) = 9e-12
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 175 PGQLNCDLRKLAVNMVPFPRLHFFMMGFAPLTSRGSQQYRALTVP 219
Score = 31.2 bits (69), Expect(2) = 9e-12
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG+TCCLR+
Sbjct: 155 GDLNHLVSAAICGITCCLRF 174
>gb|ABJ81004.1| beta tubulin, partial [Synura sphagnicola]
gi|116222283|gb|ABJ81005.1| beta tubulin, partial
[Synura sphagnicola]
Length = 387
Score = 68.9 bits (167), Expect(2) = 1e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 228 PGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVP 272
Score = 30.0 bits (66), Expect(2) = 1e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 208 GDLNHLVSAAICGTTCCLRF 227
>gb|ABJ81006.1| beta tubulin, partial [Synura sphagnicola]
Length = 387
Score = 68.9 bits (167), Expect(2) = 1e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 228 PGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVP 272
Score = 30.0 bits (66), Expect(2) = 1e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 208 GDLNHLVSAAICGTTCCLRF 227
>gb|ACR46916.1| beta-tubulin [Pinguiococcus pyrenoidosus]
Length = 323
Score = 68.9 bits (167), Expect(2) = 1e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 148 PGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVP 192
Score = 30.0 bits (66), Expect(2) = 1e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 128 GDLNHLVSAAICGTTCCLRF 147
>gb|ABO61447.1| beta tubulin, partial [Paraphysomonas imperforata]
Length = 388
Score = 68.6 bits (166), Expect(2) = 2e-11
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN++PFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 235 PGQLNCDLRKLAVNMIPFPRLHFFMIGFAPLTSRGSQQYRALTVP 279
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 215 GDLNHLVSAAICGTTCCLRF 234
>gb|ABO61446.1| beta tubulin, partial [Paraphysomonas imperforata]
Length = 388
Score = 68.6 bits (166), Expect(2) = 2e-11
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN++PFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 235 PGQLNCDLRKLAVNMIPFPRLHFFMIGFAPLTSRGSQQYRALTVP 279
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 215 GDLNHLVSAAICGTTCCLRF 234
>gb|ABO61448.1| beta tubulin, partial [Paraphysomonas imperforata]
Length = 388
Score = 68.6 bits (166), Expect(2) = 2e-11
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN++PFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 235 PGQLNCDLRKLAVNMIPFPRLHFFMIGFAPLTSRGSQQYRALTVP 279
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 215 GDLNHLVSAAICGTTCCLRF 234
>gb|ABO61470.1| beta tubulin, partial [Chrysophyceae sp. I8]
Length = 366
Score = 68.6 bits (166), Expect(2) = 2e-11
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN++PFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 200 PGQLNCDLRKLAVNMIPFPRLHFFMIGFAPLTSRGSQQYRALTVP 244
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 180 GDLNHLVSAAICGTTCCLRF 199
>gb|ABO61469.1| beta tubulin, partial [Chrysophyceae sp. I8]
Length = 366
Score = 68.6 bits (166), Expect(2) = 2e-11
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN++PFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 200 PGQLNCDLRKLAVNMIPFPRLHFFMIGFAPLTSRGSQQYRALTVP 244
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 180 GDLNHLVSAAICGTTCCLRF 199
>dbj|BAE20248.1| beta-tubulin [Lactuca sativa]
Length = 282
Score = 71.6 bits (174), Expect(2) = 2e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLNSDL KL VNL+PFPRL++FMV FAPLTS GSQQ R TVP
Sbjct: 122 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 166
Score = 26.9 bits (58), Expect(2) = 2e-11
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 224 SVGGLNHLIC----GVTCCLRY 171
S G LNH I GVTCCLR+
Sbjct: 100 SFGDLNHXISATMSGVTCCLRF 121
>ref|XP_002292479.1| tubulin beta [Thalassiosira pseudonana CCMP1335]
gi|220972121|gb|EED90454.1| tubulin beta [Thalassiosira
pseudonana CCMP1335]
Length = 443
Score = 68.2 bits (165), Expect(2) = 2e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FMV +APLTS GSQQ R TVP
Sbjct: 243 PGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVP 287
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHLI----CGVTCCLRY 171
G LNHLI CG TCCLR+
Sbjct: 223 GDLNHLIAAAVCGTTCCLRF 242
>sp|Q9LKI8.1|TBB_THAWE RecName: Full=Tubulin beta chain; AltName: Full=Beta-tubulin
gi|8926601|gb|AAF81906.1|AF276908_1 beta-tubulin
[Thalassiosira weissflogii]
Length = 443
Score = 68.2 bits (165), Expect(2) = 2e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FMV +APLTS GSQQ R TVP
Sbjct: 243 PGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVP 287
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHLI----CGVTCCLRY 171
G LNHLI CG TCCLR+
Sbjct: 223 GDLNHLIAAAVCGTTCCLRF 242
>gb|AAW58087.1| beta-tubulin, partial [Spumella uniguttata]
Length = 404
Score = 68.2 bits (165), Expect(2) = 2e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 236 PGQLNCDLRKLAVNMVPFPRLHFFMMGFAPLTSRGSQQYRALTVP 280
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 216 GDLNHLVSAAICGTTCCLRF 235
>gb|AHC92559.1| beta tubulin subunit, partial [Spumella sp. OF-40]
Length = 403
Score = 68.2 bits (165), Expect(2) = 2e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 226 PGQLNCDLRKLAVNMVPFPRLHFFMMGFAPLTSRGSQQYRALTVP 270
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 206 GDLNHLVSAAICGTTCCLRF 225
>gb|AHC92558.1| beta tubulin subunit, partial [Spumella sp. OF-40]
Length = 403
Score = 68.2 bits (165), Expect(2) = 2e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 226 PGQLNCDLRKLAVNMVPFPRLHFFMMGFAPLTSRGSQQYRALTVP 270
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 206 GDLNHLVSAAICGTTCCLRF 225
>gb|ABO61501.1| beta tubulin, partial [Thalassiosira sp. CCMP1987]
Length = 386
Score = 68.2 bits (165), Expect(2) = 2e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FMV +APLTS GSQQ R TVP
Sbjct: 220 PGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVP 264
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHLI----CGVTCCLRY 171
G LNHLI CG TCCLR+
Sbjct: 200 GDLNHLIAAAVCGTTCCLRF 219
>gb|ABX55843.1| beta-tubulin, partial [Spumella-like flagellate JBNA45]
Length = 355
Score = 68.2 bits (165), Expect(2) = 2e-11
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -3
Query: 171 PDQLNSDLHKLTVNLVPFPRLYYFMVAFAPLTSLGSQQCRTPTVP 37
P QLN DL KL VN+VPFPRL++FM+ FAPLTS GSQQ R TVP
Sbjct: 225 PGQLNCDLRKLAVNMVPFPRLHFFMMGFAPLTSRGSQQYRALTVP 269
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Frame = -1
Query: 218 GGLNHL----ICGVTCCLRY 171
G LNHL ICG TCCLR+
Sbjct: 205 GDLNHLVSAAICGTTCCLRF 224