BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00023810
         (2333 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009385774.1| PREDICTED: probable RNA-dependent RNA polyme...   662   0.0  
ref|XP_009385772.1| PREDICTED: probable RNA-dependent RNA polyme...   662   0.0  
ref|XP_009385771.1| PREDICTED: probable RNA-dependent RNA polyme...   662   0.0  
ref|XP_011008583.1| PREDICTED: probable RNA-dependent RNA polyme...   623   0.0  
ref|XP_010656269.1| PREDICTED: probable RNA-dependent RNA polyme...   649   0.0  
ref|XP_008791530.1| PREDICTED: probable RNA-dependent RNA polyme...   649   0.0  
ref|XP_008791522.1| PREDICTED: probable RNA-dependent RNA polyme...   649   0.0  
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   614   0.0  
ref|XP_009592436.1| PREDICTED: probable RNA-dependent RNA polyme...   602   e-179
ref|XP_010656270.1| PREDICTED: probable RNA-dependent RNA polyme...   635   e-179
ref|XP_009780069.1| PREDICTED: probable RNA-dependent RNA polyme...   595   e-177
ref|XP_009592437.1| PREDICTED: probable RNA-dependent RNA polyme...   597   e-177
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   585   e-177
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   585   e-177
ref|XP_009352548.1| PREDICTED: probable RNA-dependent RNA polyme...   590   e-177
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   627   e-176
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   627   e-176
gb|KDO66531.1| hypothetical protein CISIN_1g001771mg [Citrus sin...   581   e-176
ref|XP_009780070.1| PREDICTED: probable RNA-dependent RNA polyme...   590   e-176
ref|XP_011025605.1| PREDICTED: probable RNA-dependent RNA polyme...   617   e-173

>ref|XP_009385774.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X4 [Musa
            acuminata subsp. malaccensis]
          Length = 802

 Score =  662 bits (1707), Expect = 0.0
 Identities = 362/682 (53%), Positives = 472/682 (69%), Gaps = 7/682 (1%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDC---VDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFS 2162
            TSS VKCYFV M+    VD +        IL  K + EAR++FMH+H +SS +KYMARFS
Sbjct: 102  TSSPVKCYFVRMESNWGVDQEKAY-----ILSDKFIHEARTVFMHIHTVSSLSKYMARFS 156

Query: 2161 LILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCP 1982
            LILSKTIKLDID +S+ VE I+DI C D +G I+  E+G+P IHTDGTGFIS+DLA+KCP
Sbjct: 157  LILSKTIKLDIDLSSIHVEVIDDIPCVDDNGNILCGENGDPMIHTDGTGFISEDLAMKCP 216

Query: 1981 RNIFKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTA 1802
            ++I++GK S  +D +K L    A E  LG  +  RS   + PLLIQFRMF+NG AVKGT 
Sbjct: 217  QHIYRGKCSIPTDIQKCLGGAEALERLLGTAQC-RSLTSEVPLLIQFRMFNNGRAVKGTL 275

Query: 1801 LVNKKLPPKTIQVRPSMIKVRSD--LGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLL 1628
            L+NK LPP+TIQVR SMIKV+SD  + Y+      NS E+VATS +PKRT LS++LIVLL
Sbjct: 276  LLNKLLPPETIQVRRSMIKVKSDPNISYIQS---CNSIEIVATSNQPKRTCLSRHLIVLL 332

Query: 1627 SYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESF 1448
             YGGVP  +FLELL ++L+D +     K+AALR AL YG+MDDFLV++MILCG+PL E +
Sbjct: 333  HYGGVPKEFFLELLMNSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDEPY 392

Query: 1447 LKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVY 1268
            L+ RLS+LMR E KSLK GKLP+ D YYLMGT DPTG+LKP++VCVILE+GQVSGD+LVY
Sbjct: 393  LQFRLSILMREERKSLKTGKLPVMDCYYLMGTVDPTGLLKPNEVCVILENGQVSGDVLVY 452

Query: 1267 KHPGLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCR 1088
            KHPGLHFGD+HVLTATY ++LE +VG +KY IFFP  GPRS+ADE+ANSD DGDMYWV R
Sbjct: 453  KHPGLHFGDVHVLTATYNKDLEKFVGYSKYAIFFPTKGPRSLADEMANSDFDGDMYWVSR 512

Query: 1087 NPQLLNWFRPSTPWT-QKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVA 914
            N QLL +FR S PWT      + + Q KP +FS ++ LE  LF++FL  RF  SN V +A
Sbjct: 513  NSQLLQYFRSSMPWTPTPSNMRGIQQKKPIEFSSKE-LERELFQQFLINRFKPSNTVSMA 571

Query: 913  AICWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKT 734
            + CWLS MD  LTL +  AE+ + +++K+L L +IYYDALD  KSG K+ +P +L+ +K 
Sbjct: 572  SDCWLSYMDRLLTLGDECAEEKECLKEKILQLVNIYYDALDAPKSGVKVEVPIELKAEKY 631

Query: 733  PHFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSF 554
            PH+M+                 + NSY S SILG IFD+V + +   +     + KLP F
Sbjct: 632  PHYME-----------------RSNSYTSMSILGLIFDKVSSVQT-EDPPSNGISKLPCF 673

Query: 553  EQVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYH 374
             +   +  +  W+++++ Y  EM+  +    +K +  D     N+ +  + QKYK +LY 
Sbjct: 674  TEEPSQSCLLLWSQRYSNYLKEMKQVME---MKHETKD---SKNEMADEIIQKYKLLLYG 727

Query: 373  APELDQSPRKEEDIYT*TLLPY 308
            A E D+SPRK EDI+   L  Y
Sbjct: 728  AAEFDESPRKLEDIWDEALAIY 749


>ref|XP_009385772.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 995

 Score =  662 bits (1707), Expect = 0.0
 Identities = 362/682 (53%), Positives = 472/682 (69%), Gaps = 7/682 (1%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDC---VDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFS 2162
            TSS VKCYFV M+    VD +        IL  K + EAR++FMH+H +SS +KYMARFS
Sbjct: 295  TSSPVKCYFVRMESNWGVDQEKAY-----ILSDKFIHEARTVFMHIHTVSSLSKYMARFS 349

Query: 2161 LILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCP 1982
            LILSKTIKLDID +S+ VE I+DI C D +G I+  E+G+P IHTDGTGFIS+DLA+KCP
Sbjct: 350  LILSKTIKLDIDLSSIHVEVIDDIPCVDDNGNILCGENGDPMIHTDGTGFISEDLAMKCP 409

Query: 1981 RNIFKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTA 1802
            ++I++GK S  +D +K L    A E  LG  +  RS   + PLLIQFRMF+NG AVKGT 
Sbjct: 410  QHIYRGKCSIPTDIQKCLGGAEALERLLGTAQC-RSLTSEVPLLIQFRMFNNGRAVKGTL 468

Query: 1801 LVNKKLPPKTIQVRPSMIKVRSD--LGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLL 1628
            L+NK LPP+TIQVR SMIKV+SD  + Y+      NS E+VATS +PKRT LS++LIVLL
Sbjct: 469  LLNKLLPPETIQVRRSMIKVKSDPNISYIQS---CNSIEIVATSNQPKRTCLSRHLIVLL 525

Query: 1627 SYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESF 1448
             YGGVP  +FLELL ++L+D +     K+AALR AL YG+MDDFLV++MILCG+PL E +
Sbjct: 526  HYGGVPKEFFLELLMNSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDEPY 585

Query: 1447 LKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVY 1268
            L+ RLS+LMR E KSLK GKLP+ D YYLMGT DPTG+LKP++VCVILE+GQVSGD+LVY
Sbjct: 586  LQFRLSILMREERKSLKTGKLPVMDCYYLMGTVDPTGLLKPNEVCVILENGQVSGDVLVY 645

Query: 1267 KHPGLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCR 1088
            KHPGLHFGD+HVLTATY ++LE +VG +KY IFFP  GPRS+ADE+ANSD DGDMYWV R
Sbjct: 646  KHPGLHFGDVHVLTATYNKDLEKFVGYSKYAIFFPTKGPRSLADEMANSDFDGDMYWVSR 705

Query: 1087 NPQLLNWFRPSTPWT-QKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVA 914
            N QLL +FR S PWT      + + Q KP +FS ++ LE  LF++FL  RF  SN V +A
Sbjct: 706  NSQLLQYFRSSMPWTPTPSNMRGIQQKKPIEFSSKE-LERELFQQFLINRFKPSNTVSMA 764

Query: 913  AICWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKT 734
            + CWLS MD  LTL +  AE+ + +++K+L L +IYYDALD  KSG K+ +P +L+ +K 
Sbjct: 765  SDCWLSYMDRLLTLGDECAEEKECLKEKILQLVNIYYDALDAPKSGVKVEVPIELKAEKY 824

Query: 733  PHFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSF 554
            PH+M+                 + NSY S SILG IFD+V + +   +     + KLP F
Sbjct: 825  PHYME-----------------RSNSYTSMSILGLIFDKVSSVQT-EDPPSNGISKLPCF 866

Query: 553  EQVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYH 374
             +   +  +  W+++++ Y  EM+  +    +K +  D     N+ +  + QKYK +LY 
Sbjct: 867  TEEPSQSCLLLWSQRYSNYLKEMKQVME---MKHETKD---SKNEMADEIIQKYKLLLYG 920

Query: 373  APELDQSPRKEEDIYT*TLLPY 308
            A E D+SPRK EDI+   L  Y
Sbjct: 921  AAEFDESPRKLEDIWDEALAIY 942


>ref|XP_009385771.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 996

 Score =  662 bits (1707), Expect = 0.0
 Identities = 362/682 (53%), Positives = 472/682 (69%), Gaps = 7/682 (1%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDC---VDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFS 2162
            TSS VKCYFV M+    VD +        IL  K + EAR++FMH+H +SS +KYMARFS
Sbjct: 296  TSSPVKCYFVRMESNWGVDQEKAY-----ILSDKFIHEARTVFMHIHTVSSLSKYMARFS 350

Query: 2161 LILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCP 1982
            LILSKTIKLDID +S+ VE I+DI C D +G I+  E+G+P IHTDGTGFIS+DLA+KCP
Sbjct: 351  LILSKTIKLDIDLSSIHVEVIDDIPCVDDNGNILCGENGDPMIHTDGTGFISEDLAMKCP 410

Query: 1981 RNIFKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTA 1802
            ++I++GK S  +D +K L    A E  LG  +  RS   + PLLIQFRMF+NG AVKGT 
Sbjct: 411  QHIYRGKCSIPTDIQKCLGGAEALERLLGTAQC-RSLTSEVPLLIQFRMFNNGRAVKGTL 469

Query: 1801 LVNKKLPPKTIQVRPSMIKVRSD--LGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLL 1628
            L+NK LPP+TIQVR SMIKV+SD  + Y+      NS E+VATS +PKRT LS++LIVLL
Sbjct: 470  LLNKLLPPETIQVRRSMIKVKSDPNISYIQS---CNSIEIVATSNQPKRTCLSRHLIVLL 526

Query: 1627 SYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESF 1448
             YGGVP  +FLELL ++L+D +     K+AALR AL YG+MDDFLV++MILCG+PL E +
Sbjct: 527  HYGGVPKEFFLELLMNSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDEPY 586

Query: 1447 LKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVY 1268
            L+ RLS+LMR E KSLK GKLP+ D YYLMGT DPTG+LKP++VCVILE+GQVSGD+LVY
Sbjct: 587  LQFRLSILMREERKSLKTGKLPVMDCYYLMGTVDPTGLLKPNEVCVILENGQVSGDVLVY 646

Query: 1267 KHPGLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCR 1088
            KHPGLHFGD+HVLTATY ++LE +VG +KY IFFP  GPRS+ADE+ANSD DGDMYWV R
Sbjct: 647  KHPGLHFGDVHVLTATYNKDLEKFVGYSKYAIFFPTKGPRSLADEMANSDFDGDMYWVSR 706

Query: 1087 NPQLLNWFRPSTPWT-QKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVA 914
            N QLL +FR S PWT      + + Q KP +FS ++ LE  LF++FL  RF  SN V +A
Sbjct: 707  NSQLLQYFRSSMPWTPTPSNMRGIQQKKPIEFSSKE-LERELFQQFLINRFKPSNTVSMA 765

Query: 913  AICWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKT 734
            + CWLS MD  LTL +  AE+ + +++K+L L +IYYDALD  KSG K+ +P +L+ +K 
Sbjct: 766  SDCWLSYMDRLLTLGDECAEEKECLKEKILQLVNIYYDALDAPKSGVKVEVPIELKAEKY 825

Query: 733  PHFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSF 554
            PH+M+                 + NSY S SILG IFD+V + +   +     + KLP F
Sbjct: 826  PHYME-----------------RSNSYTSMSILGLIFDKVSSVQT-EDPPSNGISKLPCF 867

Query: 553  EQVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYH 374
             +   +  +  W+++++ Y  EM+  +    +K +  D     N+ +  + QKYK +LY 
Sbjct: 868  TEEPSQSCLLLWSQRYSNYLKEMKQVME---MKHETKD---SKNEMADEIIQKYKLLLYG 921

Query: 373  APELDQSPRKEEDIYT*TLLPY 308
            A E D+SPRK EDI+   L  Y
Sbjct: 922  AAEFDESPRKLEDIWDEALAIY 943


>ref|XP_011008583.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Populus
            euphratica]
          Length = 877

 Score =  623 bits (1607), Expect(2) = 0.0
 Identities = 342/670 (51%), Positives = 457/670 (68%), Gaps = 2/670 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            T+S VKC+FVCM+ V S D      +IL  K++ +ARS+FMHV NLSS + YMARFSLIL
Sbjct: 186  TTSPVKCFFVCMESVASIDD---QDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLIL 242

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+ L++D + V ++ I D  CRD+DG  VY  DG+P IHTDGTGFIS DLALKCP+  
Sbjct: 243  SKTMNLEVDLSFVDIKTIADEPCRDKDGNDVYGIDGKPLIHTDGTGFISYDLALKCPKKQ 302

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
             KG     S+ E++ +H         +E++     GDPPLLIQFR+F+NG AVKGT LVN
Sbjct: 303  VKGTCLQASNIERLHVHNEV------MEQNPECLYGDPPLLIQFRLFNNGRAVKGTFLVN 356

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKL  +T+ +RPSMIKV +D    N     NS E+V TS +PK+T LSK LI LLSYGGV
Sbjct: 357  KKLTHQTLHIRPSMIKVETDPKLSNTFS-KNSLEIVGTSSRPKKTVLSKNLIALLSYGGV 415

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARL 1433
            P+ +F+ +L +ALED     ++K AALR AL+YG+MDD +VA MI CGIPL E +L+  L
Sbjct: 416  PEEFFMGILNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMICCGIPLEEPYLQHHL 475

Query: 1432 SVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGL 1253
            S+LM+ E KSLK GKLP+ +SYYLMGTADPTG+L+  +VC+IL+ GQVSG++LVY++PGL
Sbjct: 476  SILMKEEKKSLKGGKLPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGL 535

Query: 1252 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQLL 1073
            HFGDIH+L ATYV+ELE+++GNAKY IFFP  GPRS+ADE++  D DGDM++V RNPQLL
Sbjct: 536  HFGDIHILKATYVRELEDFIGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLL 595

Query: 1072 NWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVAAICWLS 896
              F+ + PWT      NVP  KP++FSDE+ LE  LF+ FL  RF  S+ VGVAA  WL+
Sbjct: 596  KNFKQTEPWTPSTSTPNVPNRKPSEFSDEE-LEVELFKLFLRNRFQPSSTVGVAADSWLA 654

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV-AKSGKKIVIPPKLRQQKTPHFMQ 719
            +MD  LTL     E+I  V++ +  L DIYYDALD   K G++I +P  L+ +  PHFM+
Sbjct: 655  MMDRVLTLGNDCTEEIACVKENINLLIDIYYDALDAPKKGGRRIEVPEALKAELFPHFME 714

Query: 718  NKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVP 539
                             ++ +Y+STSILG+I+D+V+A+E+  +    +V K P F+  V 
Sbjct: 715  K---------------NENKTYRSTSILGKIYDKVKAYEDM-DLSSNDVWKHPCFDDEVQ 758

Query: 538  EDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELD 359
            E  +  W   ++ YRTEM  AL    + DQ      + N+A+  V +KYK+ILY A E +
Sbjct: 759  ERCLVKWRGLYDQYRTEMYSAL----LADQ------EKNEAANEVIRKYKRILYDAAEFN 808

Query: 358  QSPRKEEDIY 329
             S R++E+I+
Sbjct: 809  LSKRRDEEIF 818



 Score = 51.2 bits (121), Expect(2) = 0.0
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
 Frame = -1

Query: 353  SKEGRRYIYMNALAIYHVSYDEAKRHG-VGKCYFAWKVAGQALCK-YYLTRQNDAAFMCS 180
            SK     I+  A A+Y V+ ++AKR G V  C FAW+VAG ALC  Y L  Q +   +CS
Sbjct: 810  SKRRDEEIFEEARALYQVTCNDAKRQGAVRNCGFAWRVAGLALCTLYVLKNQGERPLICS 869

Query: 179  KSVLR 165
             S L+
Sbjct: 870  PSALK 874


>ref|XP_010656269.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Vitis
            vinifera]
          Length = 954

 Score =  649 bits (1675), Expect = 0.0
 Identities = 347/676 (51%), Positives = 458/676 (67%), Gaps = 2/676 (0%)
 Frame = -2

Query: 2329 SSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILS 2150
            +SSVKCYFV M+            S L  K+V EAR +FMH H +SS  KYMARFSLILS
Sbjct: 268  TSSVKCYFVFMES-----------SALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILS 316

Query: 2149 KTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIF 1970
            KT+KLD+D ++V ++ I+D   RD+DG +VY+ED +P I TDGTGFIS+DLAL+CP N+ 
Sbjct: 317  KTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLC 376

Query: 1969 KGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNK 1790
            +GK+ +  + ++ L+  +  E      + + ++  +PPLLIQ R+F+NG AVKGT L+N+
Sbjct: 377  RGKYMNNGNSDR-LVGNVELEGKFSELRCLETHTWEPPLLIQCRLFNNGCAVKGTLLLNR 435

Query: 1789 KLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVP 1610
            KLPP+TIQ+RPSMIKV +D   ++D    NS E+  TS +P+R+ LSKYLI LLSYGGVP
Sbjct: 436  KLPPRTIQIRPSMIKVETD-PKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVP 494

Query: 1609 DGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLS 1430
            + YF+ LL DALED     + KRAALR +L +GEMDD +V +MIL GIP+ E FL   LS
Sbjct: 495  NEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLS 554

Query: 1429 VLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLH 1250
             ++  E K L+ GKLP+ND +YLMGTADPTG LK  +VC+IL+ GQV G +LVYKHPGLH
Sbjct: 555  FMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLH 614

Query: 1249 FGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQLLN 1070
            FGDIHVL ATYV+ LE +VGNAKY IFFPI GPRS+ADE+ANSD DGDMYWV RN QLL 
Sbjct: 615  FGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQ 674

Query: 1069 WFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARF-SSNNVGVAAICWLSL 893
            +FR S PW +K   ++VP  +P DFS  D LEH LF+ FL  RF +S+ +G+AA  WL  
Sbjct: 675  YFRASEPWMRKRSTRHVPSKRPTDFS-PDELEHELFQLFLTTRFQTSSAIGMAADNWLVF 733

Query: 892  MDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKTPHFMQNK 713
            MD  LTL +  +++ + ++ K+L LTDIYYDALD  KSG K+ +  +L+ +K PHFM   
Sbjct: 734  MDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFM--- 790

Query: 712  SPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFE-QVVPE 536
                           +++SY STSILGQI+D VE+F+   NQ   E+ +LP F    VP+
Sbjct: 791  --------------GRESSYHSTSILGQIYDAVESFQP-ENQSTKEIWRLPLFNIDAVPQ 835

Query: 535  DRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELDQ 356
              +  W ++++ YR+EM  AL +          G   ++ +A V  KYKQILY A E ++
Sbjct: 836  ACLRSWKDRYDQYRSEMAAALQHG---------GETKDEYAAEVINKYKQILYGAAEFEE 886

Query: 355  SPRKEEDIYT*TLLPY 308
            SPR  EDI+   L  Y
Sbjct: 887  SPRNLEDIFDEALAIY 902


>ref|XP_008791530.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
            [Phoenix dactylifera]
          Length = 981

 Score =  649 bits (1674), Expect = 0.0
 Identities = 355/692 (51%), Positives = 463/692 (66%), Gaps = 7/692 (1%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMD---CVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFS 2162
            TSS VKCYFV M+    +D D+P      IL  K + EAR++FMH H +SS  KYMARFS
Sbjct: 277  TSSPVKCYFVRMESSWAMDKDEPY-----ILSDKLIHEARTIFMHAHTVSSLAKYMARFS 331

Query: 2161 LILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCP 1982
            LILSKTIKLDID ASV V++IEDI C D+DG IVY+EDG+PRIHTDGTGFIS+DLA+KCP
Sbjct: 332  LILSKTIKLDIDLASVHVKQIEDIPCMDEDGNIVYDEDGKPRIHTDGTGFISEDLAMKCP 391

Query: 1981 RNIFKGKWSSQSDFEKILLHQ-IAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGT 1805
             NIFKG      D +KIL    I E  S    +  RS   +PPLLIQFR+F +GSAVKGT
Sbjct: 392  GNIFKGHCLIPGDIQKILDGSGILERDSSS--RQCRSCSAEPPLLIQFRLFKDGSAVKGT 449

Query: 1804 ALVNKKLPPKTIQVRPSMIKVRSD--LGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVL 1631
             L++K+LPP TI +RPSM+KV +D  + Y+      NS EVV +S +PKRT LS+ +I L
Sbjct: 450  LLIDKRLPPNTILIRPSMLKVEADPSISYIQS---CNSLEVVGSSNRPKRTFLSRNIIAL 506

Query: 1630 LSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGES 1451
            L YGGVP  YFLELL +AL+D +    +K+AALR AL YG+MDDFLVA+MILCGIPLGE 
Sbjct: 507  LHYGGVPKEYFLELLMNALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLGEP 566

Query: 1450 FLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILV 1271
            +L++RL VL R E+K+LKEGKLP+++ YYLMG+ DPTG LKP++VC+ILE+G VSGD+LV
Sbjct: 567  YLQSRLLVLRREEMKALKEGKLPVSECYYLMGSVDPTGTLKPNEVCIILENGHVSGDVLV 626

Query: 1270 YKHPGLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVC 1091
            Y+ PGLHFGD+H+LTATYV++L+  VGN+KY I F   GPRS+ADE+A  D DGDMYWV 
Sbjct: 627  YRQPGLHFGDMHILTATYVKDLDKIVGNSKYAILFSTKGPRSLADEMAGGDFDGDMYWVS 686

Query: 1090 RNPQLLNWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVA 914
            RNPQLL +F+ S PW +      V Q KP  FS+ + LE  LFE+FL  RF  S  +G A
Sbjct: 687  RNPQLLKYFKASKPWVRTAPRIKVTQLKPTQFSNTE-LERELFEQFLINRFKPSYTIGTA 745

Query: 913  AICWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKT 734
            + CWL  MD  LTL +  A++ + + +K+L L DIYYDALD +KSG KI +P +L+  + 
Sbjct: 746  SDCWLMYMDRLLTLGDECAKQKQLLREKMLELVDIYYDALDASKSGLKIEVPSELKPDQF 805

Query: 733  PHFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSF 554
            P+FM+ K               KD  Y+S SI G I+++V+   +  +    E+ +LP F
Sbjct: 806  PNFMEKK------------YLDKDKEYESKSIFGLIYEKVK-LSQTKDLSSNEIWQLPCF 852

Query: 553  EQVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYH 374
               +P   +  W E +  Y  EM   ++ E    +  D  +        V QKYK +LY 
Sbjct: 853  NLEIPPSCLKSWKEHYTEYLAEMSQVMSMEHESKESKDWMANK------VIQKYKLMLYG 906

Query: 373  APELDQSPRKEEDIYT*TLLPYIMSPTMKRSV 278
            A E ++S R+ +DI+   L  Y ++    +SV
Sbjct: 907  ASEFEESNRELDDIFNEALAIYHVTYEYAKSV 938


>ref|XP_008791522.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
            [Phoenix dactylifera]
          Length = 1006

 Score =  649 bits (1674), Expect = 0.0
 Identities = 355/692 (51%), Positives = 463/692 (66%), Gaps = 7/692 (1%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMD---CVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFS 2162
            TSS VKCYFV M+    +D D+P      IL  K + EAR++FMH H +SS  KYMARFS
Sbjct: 302  TSSPVKCYFVRMESSWAMDKDEPY-----ILSDKLIHEARTIFMHAHTVSSLAKYMARFS 356

Query: 2161 LILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCP 1982
            LILSKTIKLDID ASV V++IEDI C D+DG IVY+EDG+PRIHTDGTGFIS+DLA+KCP
Sbjct: 357  LILSKTIKLDIDLASVHVKQIEDIPCMDEDGNIVYDEDGKPRIHTDGTGFISEDLAMKCP 416

Query: 1981 RNIFKGKWSSQSDFEKILLHQ-IAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGT 1805
             NIFKG      D +KIL    I E  S    +  RS   +PPLLIQFR+F +GSAVKGT
Sbjct: 417  GNIFKGHCLIPGDIQKILDGSGILERDSSS--RQCRSCSAEPPLLIQFRLFKDGSAVKGT 474

Query: 1804 ALVNKKLPPKTIQVRPSMIKVRSD--LGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVL 1631
             L++K+LPP TI +RPSM+KV +D  + Y+      NS EVV +S +PKRT LS+ +I L
Sbjct: 475  LLIDKRLPPNTILIRPSMLKVEADPSISYIQS---CNSLEVVGSSNRPKRTFLSRNIIAL 531

Query: 1630 LSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGES 1451
            L YGGVP  YFLELL +AL+D +    +K+AALR AL YG+MDDFLVA+MILCGIPLGE 
Sbjct: 532  LHYGGVPKEYFLELLMNALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLGEP 591

Query: 1450 FLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILV 1271
            +L++RL VL R E+K+LKEGKLP+++ YYLMG+ DPTG LKP++VC+ILE+G VSGD+LV
Sbjct: 592  YLQSRLLVLRREEMKALKEGKLPVSECYYLMGSVDPTGTLKPNEVCIILENGHVSGDVLV 651

Query: 1270 YKHPGLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVC 1091
            Y+ PGLHFGD+H+LTATYV++L+  VGN+KY I F   GPRS+ADE+A  D DGDMYWV 
Sbjct: 652  YRQPGLHFGDMHILTATYVKDLDKIVGNSKYAILFSTKGPRSLADEMAGGDFDGDMYWVS 711

Query: 1090 RNPQLLNWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVA 914
            RNPQLL +F+ S PW +      V Q KP  FS+ + LE  LFE+FL  RF  S  +G A
Sbjct: 712  RNPQLLKYFKASKPWVRTAPRIKVTQLKPTQFSNTE-LERELFEQFLINRFKPSYTIGTA 770

Query: 913  AICWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKT 734
            + CWL  MD  LTL +  A++ + + +K+L L DIYYDALD +KSG KI +P +L+  + 
Sbjct: 771  SDCWLMYMDRLLTLGDECAKQKQLLREKMLELVDIYYDALDASKSGLKIEVPSELKPDQF 830

Query: 733  PHFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSF 554
            P+FM+ K               KD  Y+S SI G I+++V+   +  +    E+ +LP F
Sbjct: 831  PNFMEKK------------YLDKDKEYESKSIFGLIYEKVK-LSQTKDLSSNEIWQLPCF 877

Query: 553  EQVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYH 374
               +P   +  W E +  Y  EM   ++ E    +  D  +        V QKYK +LY 
Sbjct: 878  NLEIPPSCLKSWKEHYTEYLAEMSQVMSMEHESKESKDWMANK------VIQKYKLMLYG 931

Query: 373  APELDQSPRKEEDIYT*TLLPYIMSPTMKRSV 278
            A E ++S R+ +DI+   L  Y ++    +SV
Sbjct: 932  ASEFEESNRELDDIFNEALAIYHVTYEYAKSV 963


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  614 bits (1584), Expect(2) = 0.0
 Identities = 338/670 (50%), Positives = 445/670 (66%), Gaps = 2/670 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            T+S VKC+FVCM+ V S D      +IL  K++ +ARS+FMHV NLSS + YMARFSLIL
Sbjct: 186  TTSPVKCFFVCMESVASVDN---QDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLIL 242

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+ L++D + V ++ I D  CRD+DG  VY  DG+P IHTDGTGFIS DLALKCP+N 
Sbjct: 243  SKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQ 302

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
             KG     S+ E++ +H         +E++     GDPPLLIQFR+F+NG AVKGT LVN
Sbjct: 303  VKGTCLQASNIERLRVHNEV------MEQNPECLHGDPPLLIQFRLFNNGRAVKGTFLVN 356

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKL  +T+ VRPSMIKV +D    N     NS E+V TS +PK+T LSK LI LLSYGGV
Sbjct: 357  KKLNHRTLHVRPSMIKVETDPKLSNTFS-KNSLEIVGTSCRPKKTFLSKNLIALLSYGGV 415

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARL 1433
            P+ +F+ +L +ALED     ++K+AALR AL+YG+MDD +VA MI CGIPL E +L+  L
Sbjct: 416  PEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHHL 475

Query: 1432 SVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGL 1253
            S+L + E KSLK GK+P+ +SYYLMGTADPTG+L+  +VC+IL+ GQVSG++LVY++PGL
Sbjct: 476  SILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGL 535

Query: 1252 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQLL 1073
            HFGDIH+L ATYV+ELE++VGNAKY IFFP  GPRS+ADE++  D DGDM++V RNP+LL
Sbjct: 536  HFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRLL 595

Query: 1072 NWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVAAICWLS 896
              F+ + PWT      NVP  KP++FSDE+ LE  LF+ FL  RF  S  VGVAA  WL+
Sbjct: 596  ENFKQTEPWTPSTSTPNVPNRKPSEFSDEE-LEVELFKLFLRNRFQPSFTVGVAADSWLA 654

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV-AKSGKKIVIPPKLRQQKTPHFMQ 719
            +MD  LTL     E+I  V+  +  L DIYYDALD   K G+KI +P  L+ +  PHFM+
Sbjct: 655  MMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFME 714

Query: 718  NKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVP 539
                             +  +Y+STSILG+I+D+V+A+E+                  V 
Sbjct: 715  K---------------HEKKTYRSTSILGKIYDKVKAYEDM------------DLSSNVH 747

Query: 538  EDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELD 359
            E  +  W   +  YRTEMR+AL            G + N  +  V +KYK+ILY A E +
Sbjct: 748  ESCLVKWKGLYGQYRTEMRNAL----------QAGKEKNNEANEVIKKYKEILYEAAEFN 797

Query: 358  QSPRKEEDIY 329
             S R++E+I+
Sbjct: 798  LSRRRDEEIF 807



 Score = 57.8 bits (138), Expect(2) = 0.0
 Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
 Frame = -1

Query: 332 IYMNALAIYHVSYDEAKRHG-VGKCYFAWKVAGQALCK-YYLTRQNDAAFMCSKSVLR 165
           I+  A A+Y V+Y+ AKR G VGKC FAW+VAG ALC  Y L  Q +   +CS S L+
Sbjct: 806 IFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTLYVLKNQEERPLICSPSALK 863


>ref|XP_009592436.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1020

 Score =  602 bits (1553), Expect(2) = e-179
 Identities = 322/676 (47%), Positives = 449/676 (66%), Gaps = 2/676 (0%)
 Frame = -2

Query: 2329 SSSVKCYFVCMDCVDSDDPLTIAPSILFC-KSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            ++S+KCYFV  + +++ +      S +F  K  SEAR  FMHVH +S+  KY AR SLIL
Sbjct: 325  TASLKCYFVRFESIETYNH---GGSYVFAAKRTSEARCHFMHVHMVSNMAKYAARLSLIL 381

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKTIKL ++ ASV +E +EDI CRD+ GCI+ +EDGEPRIHTDGTGFIS+DLA++CP++ 
Sbjct: 382  SKTIKLQVNLASVTIERVEDILCRDESGCIICDEDGEPRIHTDGTGFISEDLAMRCPKDF 441

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
             K ++    ++E  +   +  E  +   +   S   +PPLL+Q R+F NG AVKGT LVN
Sbjct: 442  SKAEYIKDENYENFV-DIVDLEDMIAERRGNGSLNKEPPLLMQCRLFKNGCAVKGTFLVN 500

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            +K+  + IQ+RPSM+KV +D   ++  P  NS EVVA S +P++T LSK+LI LLSYGGV
Sbjct: 501  RKIGSRKIQIRPSMVKVETD-PTISALPTFNSLEVVAISHRPRKTYLSKHLISLLSYGGV 559

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDD-FLVAKMILCGIPLGESFLKAR 1436
             + +F+E+L  ALE+TK+ +  KRAAL+ A++Y EMDD  L A++I  G+PL E  L AR
Sbjct: 560  GNEFFMEILGSALEETKQVYLKKRAALKVAINYREMDDDCLAARLISSGVPLNEPHLHAR 619

Query: 1435 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPG 1256
            LS L + E   L+ GKLP++DS+YLMGTADPTG+L+ ++VCVIL+SGQVSG +LVY++PG
Sbjct: 620  LSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLENNEVCVILDSGQVSGRVLVYRNPG 679

Query: 1255 LHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQL 1076
            LHFGD+HV+ A YV+EL + VG+AKYGIFF   GPRS A EIAN D DGDMYWV  N +L
Sbjct: 680  LHFGDVHVMKARYVEELVDIVGDAKYGIFFSTKGPRSAASEIANGDFDGDMYWVSINRKL 739

Query: 1075 LNWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFSSNNVGVAAICWLS 896
            ++ +R S PWT+ H        KP +FS  D LE+ LF +FL A+    ++ VAA  WL+
Sbjct: 740  VDSYRASKPWTRMHSTPKAVSKKPTEFS-ADELEYELFRQFLGAKSKGASMSVAADSWLA 798

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKTPHFMQN 716
             MD  L L + + + +  ++ K+LHL DIYYDALD  KSGKK+ IP  L+  + PH+M+ 
Sbjct: 799  FMDLLLMLRDDDVDGMHSLKGKILHLIDIYYDALDAPKSGKKVSIPHDLKANRFPHYMER 858

Query: 715  KSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVPE 536
             +P                SY STSILGQI+D V+++ +  +  + E+ KLP F+  +P+
Sbjct: 859  GNP---------------FSYHSTSILGQIYDYVDSYPD-EDLCITEISKLPCFDVEIPD 902

Query: 535  DRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELDQ 356
            + +A W E++  Y+ +M  A+N+              N A   V +KYK++LY APE +Q
Sbjct: 903  ECMALWGERYEEYKKDMTMAMNSGC---------EVKNSACNEVIKKYKKLLYGAPEFEQ 953

Query: 355  SPRKEEDIYT*TLLPY 308
            S RK +DI+   L  Y
Sbjct: 954  SVRKTKDIFNEALALY 969



 Score = 56.6 bits (135), Expect(2) = e-179
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYDEAK-RHGVGKCYFAWKVAGQALCKYYLTRQNDAAFMCSKSVLREL 159
            I+  ALA+YHV+YD A+  + + KC FAWKVAG ALC+ +     + AF    S+L+++
Sbjct: 961  IFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYHKENAFPILPSILQDI 1019


>ref|XP_010656270.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Vitis
            vinifera] gi|297738765|emb|CBI28010.3| unnamed protein
            product [Vitis vinifera]
          Length = 929

 Score =  635 bits (1637), Expect = e-179
 Identities = 344/676 (50%), Positives = 447/676 (66%), Gaps = 2/676 (0%)
 Frame = -2

Query: 2329 SSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILS 2150
            +SSVKCYFV M+            S L  K+V EAR +FMH H +SS  KYMARFSLILS
Sbjct: 268  TSSVKCYFVFMES-----------SALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILS 316

Query: 2149 KTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIF 1970
            KT+KLD+D ++V ++ I+D   RD+DG +VY+ED +P I TDGTGFIS+DLAL+CP N+ 
Sbjct: 317  KTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLC 376

Query: 1969 KGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNK 1790
            +GK+ +  + +                          PLLIQ R+F+NG AVKGT L+N+
Sbjct: 377  RGKYMNNGNSD--------------------------PLLIQCRLFNNGCAVKGTLLLNR 410

Query: 1789 KLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVP 1610
            KLPP+TIQ+RPSMIKV +D   ++D    NS E+  TS +P+R+ LSKYLI LLSYGGVP
Sbjct: 411  KLPPRTIQIRPSMIKVETD-PKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVP 469

Query: 1609 DGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLS 1430
            + YF+ LL DALED     + KRAALR +L +GEMDD +V +MIL GIP+ E FL   LS
Sbjct: 470  NEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLS 529

Query: 1429 VLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLH 1250
             ++  E K L+ GKLP+ND +YLMGTADPTG LK  +VC+IL+ GQV G +LVYKHPGLH
Sbjct: 530  FMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLH 589

Query: 1249 FGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQLLN 1070
            FGDIHVL ATYV+ LE +VGNAKY IFFPI GPRS+ADE+ANSD DGDMYWV RN QLL 
Sbjct: 590  FGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQ 649

Query: 1069 WFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARF-SSNNVGVAAICWLSL 893
            +FR S PW +K   ++VP  +P DFS  D LEH LF+ FL  RF +S+ +G+AA  WL  
Sbjct: 650  YFRASEPWMRKRSTRHVPSKRPTDFS-PDELEHELFQLFLTTRFQTSSAIGMAADNWLVF 708

Query: 892  MDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKTPHFMQNK 713
            MD  LTL +  +++ + ++ K+L LTDIYYDALD  KSG K+ +  +L+ +K PHFM   
Sbjct: 709  MDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFM--- 765

Query: 712  SPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFE-QVVPE 536
                           +++SY STSILGQI+D VE+F+   NQ   E+ +LP F    VP+
Sbjct: 766  --------------GRESSYHSTSILGQIYDAVESFQP-ENQSTKEIWRLPLFNIDAVPQ 810

Query: 535  DRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELDQ 356
              +  W ++++ YR+EM  AL +          G   ++ +A V  KYKQILY A E ++
Sbjct: 811  ACLRSWKDRYDQYRSEMAAALQHG---------GETKDEYAAEVINKYKQILYGAAEFEE 861

Query: 355  SPRKEEDIYT*TLLPY 308
            SPR  EDI+   L  Y
Sbjct: 862  SPRNLEDIFDEALAIY 877


>ref|XP_009780069.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X1
            [Nicotiana sylvestris]
          Length = 1023

 Score =  595 bits (1535), Expect(2) = e-177
 Identities = 319/676 (47%), Positives = 445/676 (65%), Gaps = 2/676 (0%)
 Frame = -2

Query: 2329 SSSVKCYFVCMDCVDSDDPLTIAPSILFC-KSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            ++S+KCYFV  + +++ +      S +F  +  SEAR  FMHVH +S+  KY AR SLIL
Sbjct: 328  TASLKCYFVRFESIETYNH---GGSYVFAGRRTSEARCHFMHVHMVSNMAKYAARLSLIL 384

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKTIKL ++ ASV +E +EDI CRD+ GCI+ +EDGEP IHTDGTGFIS+DLA++CP++ 
Sbjct: 385  SKTIKLQVNLASVTIERVEDILCRDESGCIICDEDGEPCIHTDGTGFISEDLAMRCPKDF 444

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
             K ++    ++E  +   +  E  +   +   S   +PPLL+Q R++ NG AVKGT L+N
Sbjct: 445  SKAEYIKDENYENFV-DIVDLEDMIAERRGNGSLNKEPPLLMQCRLYKNGCAVKGTFLIN 503

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            +K+  + IQ+RPSM+KV +D   ++  P  NS EVVA S +P++T LSK+LI LLSYGGV
Sbjct: 504  RKIGSRKIQIRPSMVKVETD-PTISSLPTFNSLEVVAISNRPRKTYLSKHLISLLSYGGV 562

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDD-FLVAKMILCGIPLGESFLKAR 1436
               +F+E+L  ALE+TK+ +  KRAAL+ A++Y EMDD  L A+MI  G+PL E  L AR
Sbjct: 563  GREFFMEILGSALEETKQVYLKKRAALKVAINYREMDDDCLAARMISSGVPLNEPHLHAR 622

Query: 1435 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPG 1256
            LS L + E   L+ GKLP++DS+YLMGTADPTG+L+ ++VCVIL+SGQVSG +LVY++PG
Sbjct: 623  LSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLENNEVCVILDSGQVSGRVLVYRNPG 682

Query: 1255 LHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQL 1076
            LHFGD+HV+ A YV+EL + VG+AKYGI F   GPRS A EIAN D DGDMYWV  N +L
Sbjct: 683  LHFGDVHVMKARYVEELVDIVGDAKYGIVFSTKGPRSAASEIANGDFDGDMYWVSINRKL 742

Query: 1075 LNWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFSSNNVGVAAICWLS 896
            ++ +R S PWT+ H        KP +FS  D LE+ LF +FL A+    ++ VAA  WL+
Sbjct: 743  VDSYRASKPWTRTHSTPKAVSKKPTEFS-ADELEYELFRQFLRAKSKGASMSVAADSWLA 801

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKTPHFMQN 716
             MD  L L + +A+ +  ++ K+LHL DIYYDALD  KSGKK+ IP  L+  + PH+M+ 
Sbjct: 802  FMDRLLMLRDDDADGMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHDLKANRFPHYMER 861

Query: 715  KSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVPE 536
             +P                SY STSILGQI+D V+++ +  +  + E+ KLP F+  +P+
Sbjct: 862  GNP---------------FSYHSTSILGQIYDYVDSYPD-EDLCITEISKLPCFDVEIPD 905

Query: 535  DRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELDQ 356
            +    W E++  Y+ +M  A+N+              N A   V +KYK++LY APE +Q
Sbjct: 906  ECTTLWRERYEEYKKDMTMAMNSGC---------EVKNSACNEVIKKYKKLLYGAPEFEQ 956

Query: 355  SPRKEEDIYT*TLLPY 308
            S RK EDI+   L  Y
Sbjct: 957  SVRKTEDIFNEALALY 972



 Score = 58.5 bits (140), Expect(2) = e-177
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYDEAK-RHGVGKCYFAWKVAGQALCKYYLTRQNDAAFMCSKSVLREL 159
            I+  ALA+YHV+YD A+  + + KC FAWKVAG ALC+ +   Q + AF    S+L+++
Sbjct: 964  IFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYQKENAFPILPSILQDI 1022


>ref|XP_009592437.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X2
            [Nicotiana tomentosiformis]
          Length = 1018

 Score =  597 bits (1540), Expect(2) = e-177
 Identities = 321/676 (47%), Positives = 449/676 (66%), Gaps = 2/676 (0%)
 Frame = -2

Query: 2329 SSSVKCYFVCMDCVDSDDPLTIAPSILFC-KSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            ++S+KCYFV  + +++ +      S +F  K  SEAR  FMHVH +S+  KY AR SLIL
Sbjct: 325  TASLKCYFVRFESIETYNH---GGSYVFAAKRTSEARCHFMHVHMVSNMAKYAARLSLIL 381

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKTIKL ++ ASV +E +EDI CRD+ GCI+ +EDGEPRIHTDGTGFIS+DLA++CP++ 
Sbjct: 382  SKTIKLQVNLASVTIERVEDILCRDESGCIICDEDGEPRIHTDGTGFISEDLAMRCPKDF 441

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
             K ++    ++E  +   +  E  +   +   S   +PPLL+Q R+F NG AVKGT LVN
Sbjct: 442  SKAEYIKDENYENFV-DIVDLEDMIAERRGNGSLNKEPPLLMQCRLFKNGCAVKGTFLVN 500

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            +K+  + IQ+RPSM+KV +D   ++  P  NS EVVA  ++P++T LSK+LI LLSYGGV
Sbjct: 501  RKIGSRKIQIRPSMVKVETD-PTISALPTFNSLEVVA--IRPRKTYLSKHLISLLSYGGV 557

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDD-FLVAKMILCGIPLGESFLKAR 1436
             + +F+E+L  ALE+TK+ +  KRAAL+ A++Y EMDD  L A++I  G+PL E  L AR
Sbjct: 558  GNEFFMEILGSALEETKQVYLKKRAALKVAINYREMDDDCLAARLISSGVPLNEPHLHAR 617

Query: 1435 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPG 1256
            LS L + E   L+ GKLP++DS+YLMGTADPTG+L+ ++VCVIL+SGQVSG +LVY++PG
Sbjct: 618  LSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLENNEVCVILDSGQVSGRVLVYRNPG 677

Query: 1255 LHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQL 1076
            LHFGD+HV+ A YV+EL + VG+AKYGIFF   GPRS A EIAN D DGDMYWV  N +L
Sbjct: 678  LHFGDVHVMKARYVEELVDIVGDAKYGIFFSTKGPRSAASEIANGDFDGDMYWVSINRKL 737

Query: 1075 LNWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFSSNNVGVAAICWLS 896
            ++ +R S PWT+ H        KP +FS  D LE+ LF +FL A+    ++ VAA  WL+
Sbjct: 738  VDSYRASKPWTRMHSTPKAVSKKPTEFS-ADELEYELFRQFLGAKSKGASMSVAADSWLA 796

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKTPHFMQN 716
             MD  L L + + + +  ++ K+LHL DIYYDALD  KSGKK+ IP  L+  + PH+M+ 
Sbjct: 797  FMDLLLMLRDDDVDGMHSLKGKILHLIDIYYDALDAPKSGKKVSIPHDLKANRFPHYMER 856

Query: 715  KSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVPE 536
             +P                SY STSILGQI+D V+++ +  +  + E+ KLP F+  +P+
Sbjct: 857  GNP---------------FSYHSTSILGQIYDYVDSYPD-EDLCITEISKLPCFDVEIPD 900

Query: 535  DRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELDQ 356
            + +A W E++  Y+ +M  A+N+              N A   V +KYK++LY APE +Q
Sbjct: 901  ECMALWGERYEEYKKDMTMAMNSGC---------EVKNSACNEVIKKYKKLLYGAPEFEQ 951

Query: 355  SPRKEEDIYT*TLLPY 308
            S RK +DI+   L  Y
Sbjct: 952  SVRKTKDIFNEALALY 967



 Score = 56.6 bits (135), Expect(2) = e-177
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYDEAK-RHGVGKCYFAWKVAGQALCKYYLTRQNDAAFMCSKSVLREL 159
            I+  ALA+YHV+YD A+  + + KC FAWKVAG ALC+ +     + AF    S+L+++
Sbjct: 959  IFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYHKENAFPILPSILQDI 1017


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  585 bits (1508), Expect(2) = e-177
 Identities = 331/681 (48%), Positives = 458/681 (67%), Gaps = 6/681 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            ++S VKCYFV M+     D       IL  K+V EAR +FMHV  +SS   YM+R SLIL
Sbjct: 317  STSPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLIL 374

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+KL++DF+ + +E IED  CRD+DG +VY +DGE  IHTDGTGFIS+DLALKCP  +
Sbjct: 375  SKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYV 433

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
            +K K ++    E+ +  +  E     + ++  S+ G+PPLL+Q R+F+NG+AVKGT L+N
Sbjct: 434  YKEKCTNDDSTERSIDRKELEANFSDVART-ESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKLPP+TIQ+RPSMIKV++D   ++D    NS EVV TS +P++T LS+ LI LLSYGGV
Sbjct: 493  KKLPPQTIQIRPSMIKVKADRD-LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 551

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD-DFLVAKMILCGIPLGESFLKAR 1436
            P+ +FL++L +AL+D +   ++KR AL+ + +YG MD DF  A+MIL GI L E +L+ R
Sbjct: 552  PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHR 611

Query: 1435 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD-ILVYKHP 1259
            LS+LM+ E KSL+ GKLP+ +SYYLMGT DPTGILK ++VC+IL+ GQVS + +LVY++P
Sbjct: 612  LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNP 671

Query: 1258 GLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQ 1079
            GLHFGDIHVL ATYV+ELE++VG +KY IFFP  GPRS+ADEIA  D DGDMY+V RNP+
Sbjct: 672  GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731

Query: 1078 LLNWFRPSTPW--TQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARF-SSNNVGVAAI 908
            LL  F+ S  W  T K+ + N    +P DFS E+ LE  LF+ FL  RF  SN   +AA 
Sbjct: 732  LLKHFKESERWMSTSKNLSAN---KRPIDFSLEE-LESELFKLFLNTRFCPSNAKSLAAD 787

Query: 907  CWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV-AKSGKKIVIPPKLRQQKTP 731
            CW ++MD  LTL + +AE+   +++ +L L +IYYDALD   KSG K+ +P  L+ +K P
Sbjct: 788  CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847

Query: 730  HFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFE 551
             +M+                 +  S++STS+LG I++ V+++E   ++ V E+ KLP F+
Sbjct: 848  CYMRRD---------------ESVSFESTSVLGTIYNTVKSYEAV-DRSVTEIWKLPCFD 891

Query: 550  QVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHA 371
              VPE  +  W   ++ YR EM+ A++   V         +  +A+  V +KYKQILY A
Sbjct: 892  DGVPEACMTKWKGYYDQYRWEMKEAIDKCTV---------EREEAAELVIEKYKQILYGA 942

Query: 370  PELDQSPRKEEDIYT*TLLPY 308
             E +QS R  E+IY   L  Y
Sbjct: 943  AEFEQSTRTLEEIYNEALAIY 963



 Score = 68.2 bits (165), Expect(2) = e-177
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYD-EAKRHGVGKCYFAWKVAGQALCKYYLTRQNDAAFMCSKSVLRELQ 156
            IY  ALAIY+++YD  A R  V  C FAW+VAG AL K+Y  RQ D + +CS SVLRE+ 
Sbjct: 955  IYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREIC 1014

Query: 155  G 153
            G
Sbjct: 1015 G 1015


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  585 bits (1508), Expect(2) = e-177
 Identities = 331/681 (48%), Positives = 458/681 (67%), Gaps = 6/681 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            ++S VKCYFV M+     D       IL  K+V EAR +FMHV  +SS   YM+R SLIL
Sbjct: 315  STSPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLIL 372

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+KL++DF+ + +E IED  CRD+DG +VY +DGE  IHTDGTGFIS+DLALKCP  +
Sbjct: 373  SKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYV 431

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
            +K K ++    E+ +  +  E     + ++  S+ G+PPLL+Q R+F+NG+AVKGT L+N
Sbjct: 432  YKEKCTNDDSTERSIDRKELEANFSDVART-ESHYGEPPLLMQVRLFYNGTAVKGTLLLN 490

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKLPP+TIQ+RPSMIKV++D   ++D    NS EVV TS +P++T LS+ LI LLSYGGV
Sbjct: 491  KKLPPQTIQIRPSMIKVKADRD-LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 549

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD-DFLVAKMILCGIPLGESFLKAR 1436
            P+ +FL++L +AL+D +   ++KR AL+ + +YG MD DF  A+MIL GI L E +L+ R
Sbjct: 550  PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHR 609

Query: 1435 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD-ILVYKHP 1259
            LS+LM+ E KSL+ GKLP+ +SYYLMGT DPTGILK ++VC+IL+ GQVS + +LVY++P
Sbjct: 610  LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNP 669

Query: 1258 GLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQ 1079
            GLHFGDIHVL ATYV+ELE++VG +KY IFFP  GPRS+ADEIA  D DGDMY+V RNP+
Sbjct: 670  GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 729

Query: 1078 LLNWFRPSTPW--TQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARF-SSNNVGVAAI 908
            LL  F+ S  W  T K+ + N    +P DFS E+ LE  LF+ FL  RF  SN   +AA 
Sbjct: 730  LLKHFKESERWMSTSKNLSAN---KRPIDFSLEE-LESELFKLFLNTRFCPSNAKSLAAD 785

Query: 907  CWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV-AKSGKKIVIPPKLRQQKTP 731
            CW ++MD  LTL + +AE+   +++ +L L +IYYDALD   KSG K+ +P  L+ +K P
Sbjct: 786  CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 845

Query: 730  HFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFE 551
             +M+                 +  S++STS+LG I++ V+++E   ++ V E+ KLP F+
Sbjct: 846  CYMRRD---------------ESVSFESTSVLGTIYNTVKSYEAV-DRSVTEIWKLPCFD 889

Query: 550  QVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHA 371
              VPE  +  W   ++ YR EM+ A++   V         +  +A+  V +KYKQILY A
Sbjct: 890  DGVPEACMTKWKGYYDQYRWEMKEAIDKCTV---------EREEAAELVIEKYKQILYGA 940

Query: 370  PELDQSPRKEEDIYT*TLLPY 308
             E +QS R  E+IY   L  Y
Sbjct: 941  AEFEQSTRTLEEIYNEALAIY 961



 Score = 68.2 bits (165), Expect(2) = e-177
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYD-EAKRHGVGKCYFAWKVAGQALCKYYLTRQNDAAFMCSKSVLRELQ 156
            IY  ALAIY+++YD  A R  V  C FAW+VAG AL K+Y  RQ D + +CS SVLRE+ 
Sbjct: 953  IYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREIC 1012

Query: 155  G 153
            G
Sbjct: 1013 G 1013


>ref|XP_009352548.1| PREDICTED: probable RNA-dependent RNA polymerase 3 [Pyrus x
            bretschneideri]
          Length = 1088

 Score =  590 bits (1520), Expect(2) = e-177
 Identities = 334/671 (49%), Positives = 433/671 (64%), Gaps = 3/671 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            TSS VKCYFV MD   S D       +L  +++ EARSLFMH H +SS   YMARFSLIL
Sbjct: 394  TSSPVKCYFVRMDSDASID--RDVWHMLANRTIYEARSLFMHAHTVSSVATYMARFSLIL 451

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKTI+  +D + V VE I++  CRD+ G ++Y +D +P IHTDGTGFIS+DLAL CP NI
Sbjct: 452  SKTIRFPVDLSVVNVEFIDEEYCRDESGNLIYRDD-KPLIHTDGTGFISEDLALLCPNNI 510

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIR-SYIGDPPLLIQFRMFHNGSAVKGTALV 1796
             KGK  S    E++  H   E    G+EK    S IG+PPLLIQFR+F+ G AVKGT LV
Sbjct: 511  SKGKRISNQKIERLPNHN--ELDGKGMEKKQPGSRIGEPPLLIQFRLFYKGYAVKGTFLV 568

Query: 1795 NKKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGG 1616
            NK LPPKT+Q+RPSM+KV+ D   ++D+   N+ E+V TS+ P+++ LS+ LI LL +GG
Sbjct: 569  NKMLPPKTVQIRPSMVKVQID-PELSDNETVNALEIVGTSIPPRKSYLSRNLIALLFHGG 627

Query: 1615 VPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFL-VAKMILCGIPLGESFLKA 1439
            VP  YF+E+L  ALED      +   AL+ A++ GE+DD    A+MILCGIPL ES+L+ 
Sbjct: 628  VPKEYFMEILERALEDADSVFCNAHTALKVAVNNGEIDDNSNTARMILCGIPLDESYLQY 687

Query: 1438 RLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHP 1259
            RLS+L++ E+K L+ GKL + D YYLMGTADPTGIL+  +VC+IL+SGQVSG +LVY++P
Sbjct: 688  RLSILIKEEMKGLRRGKLYVPDCYYLMGTADPTGILEKDEVCIILDSGQVSGKVLVYRNP 747

Query: 1258 GLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQ 1079
            GLHFGDIHVL ATYV+ELE  VGNAKY IFF   GPRS+ADEI+  D DGD+YWV +NPQ
Sbjct: 748  GLHFGDIHVLKATYVKELEYVVGNAKYAIFFSRKGPRSVADEISGGDFDGDLYWVSKNPQ 807

Query: 1078 LLNWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVAAICW 902
            LL +F+PS PW     A      KPA  S ED LE  L   FL  RF  S  +  AA  W
Sbjct: 808  LLGYFKPSEPWVPASSAPKAASVKPAKLSKED-LEEQLINLFLTTRFKPSYAMSEAADSW 866

Query: 901  LSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKTPHFM 722
            L++MD  LT  +S+ ++   V+  +L L DIYYDALD  K G K+ +P  L+  K PH+M
Sbjct: 867  LAMMDRYLTRGDSSIDE-NLVKANILRLVDIYYDALDAPKKGGKVEVPKDLKVSKFPHYM 925

Query: 721  QNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVV 542
            + K                 NSY STSILG I+D V  ++   +    EV KLP F+  V
Sbjct: 926  EKK-----------------NSYPSTSILGSIYDTVNEYQP-DDLSTREVKKLPIFDVEV 967

Query: 541  PEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPEL 362
            PE+ +  W EQ+  YR +M  AL +    DQ        NQA+  +  KY++ILY   + 
Sbjct: 968  PEECLIKWREQYKQYRCDMTSALRD---GDQ-----EGKNQAAGELITKYREILYGGDDF 1019

Query: 361  DQSPRKEEDIY 329
            D+S R   +I+
Sbjct: 1020 DKSTRPMGEIF 1030



 Score = 62.8 bits (151), Expect(2) = e-177
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYDEAKRHGVGKCYFAWKVAGQALCKYYLTRQNDAA-FMCSKSVLREL 159
            I+  A+AIY+V YD A+  GV KC FAWKVAG AL K +  +Q DA  F+ S SVL+E+
Sbjct: 1029 IFDEAIAIYNVCYDYARSAGVSKCGFAWKVAGSALFKLHFIKQGDACPFLVSPSVLKEI 1087


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  627 bits (1616), Expect = e-176
 Identities = 343/680 (50%), Positives = 463/680 (68%), Gaps = 2/680 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            T+S VKC+FV M+ V S D      +IL  K++ +ARS+FMHV NLSS + YMARFSLIL
Sbjct: 186  TTSPVKCFFVRMESVASIDN---QDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLIL 242

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+ L++D + V ++ I D  CRD+DG +VY  DG+P IHTDGTGFIS DLALKCP+N 
Sbjct: 243  SKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQ 302

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
            FKG     S+ E++ +H         +E+      GDPPLLIQFR+F+NG AVKGT LVN
Sbjct: 303  FKGTCLRASNIERLNVHNEV------MEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVN 356

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKL  +T+ +RPSMIKV +D   ++     NS E+V TS +PK+T LSK LI LLSYGGV
Sbjct: 357  KKLTHQTLHIRPSMIKVETD-PKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGV 415

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARL 1433
            P+ +F+ ++ +ALED     ++K AALR AL+YG+MDD +VA MI CGIPL E +L+ RL
Sbjct: 416  PEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRL 475

Query: 1432 SVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGL 1253
            S+LM+ E KSLK GK+P+ +SYYLMGTADPTG+L+  +VC+IL+ GQ+SG++L+Y++PGL
Sbjct: 476  SILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGL 535

Query: 1252 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQLL 1073
            HFGDIH+L ATYV+ELE++VGNAKY IFFP  GPRS+ADE++  D DGDM++V RNPQLL
Sbjct: 536  HFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLL 595

Query: 1072 NWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVAAICWLS 896
              F+ + PWT      NVP  KP++FSDE+ LE  LF+ FL  RF  S+ VGVAA  WL+
Sbjct: 596  ETFKQTEPWTPSTSTPNVPNRKPSEFSDEE-LEVELFKLFLRNRFQPSSTVGVAADSWLA 654

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV-AKSGKKIVIPPKLRQQKTPHFMQ 719
            +MD  LTL    AE+I  +++ +  L DIYYDALD   K G++I +P  L+ +  PHFM 
Sbjct: 655  MMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFM- 713

Query: 718  NKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVP 539
                   G N       +  +Y+STSILG+I+D+V+A+E+  +    +V KLP F+  V 
Sbjct: 714  -------GKN-------EKKTYRSTSILGKIYDKVKAYEDM-DLSSNDVWKLPCFDDEVH 758

Query: 538  EDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELD 359
            E  +  W E +  YR EMR+AL            G ++N  +  V +KYK+ LY A E +
Sbjct: 759  ELYLVKWKELYGQYRKEMRNALK----------AGEESNDKANEVIRKYKEFLYEAAEFN 808

Query: 358  QSPRKEEDIYT*TLLPYIMS 299
             S R++E+I+   +  Y +S
Sbjct: 809  LSKRRDEEIFEEAMALYQVS 828


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  627 bits (1616), Expect = e-176
 Identities = 343/680 (50%), Positives = 463/680 (68%), Gaps = 2/680 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            T+S VKC+FV M+ V S D      +IL  K++ +ARS+FMHV NLSS + YMARFSLIL
Sbjct: 208  TTSPVKCFFVRMESVASIDN---QDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLIL 264

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+ L++D + V ++ I D  CRD+DG +VY  DG+P IHTDGTGFIS DLALKCP+N 
Sbjct: 265  SKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQ 324

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
            FKG     S+ E++ +H         +E+      GDPPLLIQFR+F+NG AVKGT LVN
Sbjct: 325  FKGTCLRASNIERLNVHNEV------MEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVN 378

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKL  +T+ +RPSMIKV +D   ++     NS E+V TS +PK+T LSK LI LLSYGGV
Sbjct: 379  KKLTHQTLHIRPSMIKVETD-PKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGV 437

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARL 1433
            P+ +F+ ++ +ALED     ++K AALR AL+YG+MDD +VA MI CGIPL E +L+ RL
Sbjct: 438  PEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRL 497

Query: 1432 SVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGL 1253
            S+LM+ E KSLK GK+P+ +SYYLMGTADPTG+L+  +VC+IL+ GQ+SG++L+Y++PGL
Sbjct: 498  SILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGL 557

Query: 1252 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQLL 1073
            HFGDIH+L ATYV+ELE++VGNAKY IFFP  GPRS+ADE++  D DGDM++V RNPQLL
Sbjct: 558  HFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLL 617

Query: 1072 NWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVAAICWLS 896
              F+ + PWT      NVP  KP++FSDE+ LE  LF+ FL  RF  S+ VGVAA  WL+
Sbjct: 618  ETFKQTEPWTPSTSTPNVPNRKPSEFSDEE-LEVELFKLFLRNRFQPSSTVGVAADSWLA 676

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV-AKSGKKIVIPPKLRQQKTPHFMQ 719
            +MD  LTL    AE+I  +++ +  L DIYYDALD   K G++I +P  L+ +  PHFM 
Sbjct: 677  MMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFM- 735

Query: 718  NKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVP 539
                   G N       +  +Y+STSILG+I+D+V+A+E+  +    +V KLP F+  V 
Sbjct: 736  -------GKN-------EKKTYRSTSILGKIYDKVKAYEDM-DLSSNDVWKLPCFDDEVH 780

Query: 538  EDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELD 359
            E  +  W E +  YR EMR+AL            G ++N  +  V +KYK+ LY A E +
Sbjct: 781  ELYLVKWKELYGQYRKEMRNALK----------AGEESNDKANEVIRKYKEFLYEAAEFN 830

Query: 358  QSPRKEEDIYT*TLLPYIMS 299
             S R++E+I+   +  Y +S
Sbjct: 831  LSKRRDEEIFEEAMALYQVS 850


>gb|KDO66531.1| hypothetical protein CISIN_1g001771mg [Citrus sinensis]
          Length = 1015

 Score =  581 bits (1498), Expect(2) = e-176
 Identities = 330/681 (48%), Positives = 457/681 (67%), Gaps = 6/681 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            ++S VKCYFV M+     D       IL  K+V EAR +FMHV  +SS   YM+R SLIL
Sbjct: 317  STSPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLIL 374

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+KL++DF+ + +E IED  CRD+DG +VY +DGE  IHTDGTGFIS+DLALKCP  +
Sbjct: 375  SKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYV 433

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
            +K K ++    E+ +  +  E     + ++  S+ G+PPLL+Q R+F+NG+AVKGT L+N
Sbjct: 434  YKEKCTNDDSTERSIDRKELEANFSDVART-ESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKLPP+TIQ+RPSMIKV++D   ++D    NS EVV TS +P++T LS+ LI LLSYGGV
Sbjct: 493  KKLPPQTIQIRPSMIKVKADRD-LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 551

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD-DFLVAKMILCGIPLGESFLKAR 1436
            P+ +FL++L +AL+D +   ++KR AL+ + +YG MD DF  A+MIL GI L E +L+ R
Sbjct: 552  PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHR 611

Query: 1435 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD-ILVYKHP 1259
            LS+LM+ E KSL+ GKLP+ +SYYLMGT DPTGILK ++VC+IL+ GQVS + +LVY++P
Sbjct: 612  LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNP 671

Query: 1258 GLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQ 1079
            GLHFGDIHVL ATYV+ELE++VG +KY IFFP  GPRS+ADEIA  D DGDMY+V RNP+
Sbjct: 672  GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731

Query: 1078 LLNWFRPSTPW--TQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARF-SSNNVGVAAI 908
            LL  F+ S  W  T K+ + N    +  DFS E+ LE  LF+ FL  RF  SN   +AA 
Sbjct: 732  LLKHFKESERWMSTSKNLSAN---KRLIDFSLEE-LESELFKLFLNTRFCPSNAKSLAAD 787

Query: 907  CWLSLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV-AKSGKKIVIPPKLRQQKTP 731
            CW ++MD  LTL + +AE+   +++ +L L +IYYDALD   KSG K+ +P  L+ +K P
Sbjct: 788  CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847

Query: 730  HFMQNKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFE 551
             +M+                 +  S++STS+LG I++ V+++E   ++ V E+ KLP F+
Sbjct: 848  CYMRRD---------------ESVSFESTSVLGTIYNTVKSYEAV-DRSVTEIWKLPCFD 891

Query: 550  QVVPEDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHA 371
              VPE  +  W   ++ YR EM+ A++   V         +  +A+  V +KYKQILY A
Sbjct: 892  DGVPEACMTKWKGYYDQYRWEMKEAIDKCTV---------EREEAAELVIEKYKQILYGA 942

Query: 370  PELDQSPRKEEDIYT*TLLPY 308
             E +QS R  E+IY   L  Y
Sbjct: 943  AEFEQSTRTLEEIYNEALAIY 963



 Score = 68.2 bits (165), Expect(2) = e-176
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYD-EAKRHGVGKCYFAWKVAGQALCKYYLTRQNDAAFMCSKSVLRELQ 156
            IY  ALAIY+++YD  A R  V  C FAW+VAG AL K+Y  RQ D + +CS SVLRE+ 
Sbjct: 955  IYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREIC 1014

Query: 155  G 153
            G
Sbjct: 1015 G 1015


>ref|XP_009780070.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X2
            [Nicotiana sylvestris]
          Length = 1021

 Score =  590 bits (1522), Expect(2) = e-176
 Identities = 318/676 (47%), Positives = 445/676 (65%), Gaps = 2/676 (0%)
 Frame = -2

Query: 2329 SSSVKCYFVCMDCVDSDDPLTIAPSILFC-KSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            ++S+KCYFV  + +++ +      S +F  +  SEAR  FMHVH +S+  KY AR SLIL
Sbjct: 328  TASLKCYFVRFESIETYNH---GGSYVFAGRRTSEARCHFMHVHMVSNMAKYAARLSLIL 384

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKTIKL ++ ASV +E +EDI CRD+ GCI+ +EDGEP IHTDGTGFIS+DLA++CP++ 
Sbjct: 385  SKTIKLQVNLASVTIERVEDILCRDESGCIICDEDGEPCIHTDGTGFISEDLAMRCPKDF 444

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
             K ++    ++E  +   +  E  +   +   S   +PPLL+Q R++ NG AVKGT L+N
Sbjct: 445  SKAEYIKDENYENFV-DIVDLEDMIAERRGNGSLNKEPPLLMQCRLYKNGCAVKGTFLIN 503

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            +K+  + IQ+RPSM+KV +D   ++  P  NS EVVA  ++P++T LSK+LI LLSYGGV
Sbjct: 504  RKIGSRKIQIRPSMVKVETD-PTISSLPTFNSLEVVA--IRPRKTYLSKHLISLLSYGGV 560

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDD-FLVAKMILCGIPLGESFLKAR 1436
               +F+E+L  ALE+TK+ +  KRAAL+ A++Y EMDD  L A+MI  G+PL E  L AR
Sbjct: 561  GREFFMEILGSALEETKQVYLKKRAALKVAINYREMDDDCLAARMISSGVPLNEPHLHAR 620

Query: 1435 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPG 1256
            LS L + E   L+ GKLP++DS+YLMGTADPTG+L+ ++VCVIL+SGQVSG +LVY++PG
Sbjct: 621  LSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLENNEVCVILDSGQVSGRVLVYRNPG 680

Query: 1255 LHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQL 1076
            LHFGD+HV+ A YV+EL + VG+AKYGI F   GPRS A EIAN D DGDMYWV  N +L
Sbjct: 681  LHFGDVHVMKARYVEELVDIVGDAKYGIVFSTKGPRSAASEIANGDFDGDMYWVSINRKL 740

Query: 1075 LNWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFSSNNVGVAAICWLS 896
            ++ +R S PWT+ H        KP +FS  D LE+ LF +FL A+    ++ VAA  WL+
Sbjct: 741  VDSYRASKPWTRTHSTPKAVSKKPTEFS-ADELEYELFRQFLRAKSKGASMSVAADSWLA 799

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKKIVIPPKLRQQKTPHFMQN 716
             MD  L L + +A+ +  ++ K+LHL DIYYDALD  KSGKK+ IP  L+  + PH+M+ 
Sbjct: 800  FMDRLLMLRDDDADGMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHDLKANRFPHYMER 859

Query: 715  KSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVPE 536
             +P                SY STSILGQI+D V+++ +  +  + E+ KLP F+  +P+
Sbjct: 860  GNP---------------FSYHSTSILGQIYDYVDSYPD-EDLCITEISKLPCFDVEIPD 903

Query: 535  DRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELDQ 356
            +    W E++  Y+ +M  A+N+              N A   V +KYK++LY APE +Q
Sbjct: 904  ECTTLWRERYEEYKKDMTMAMNSGC---------EVKNSACNEVIKKYKKLLYGAPEFEQ 954

Query: 355  SPRKEEDIYT*TLLPY 308
            S RK EDI+   L  Y
Sbjct: 955  SVRKTEDIFNEALALY 970



 Score = 58.5 bits (140), Expect(2) = e-176
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = -1

Query: 332  IYMNALAIYHVSYDEAK-RHGVGKCYFAWKVAGQALCKYYLTRQNDAAFMCSKSVLREL 159
            I+  ALA+YHV+YD A+  + + KC FAWKVAG ALC+ +   Q + AF    S+L+++
Sbjct: 962  IFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYQKENAFPILPSILQDI 1020


>ref|XP_011025605.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Populus
            euphratica] gi|743837972|ref|XP_011025606.1| PREDICTED:
            probable RNA-dependent RNA polymerase 5 [Populus
            euphratica]
          Length = 1010

 Score =  617 bits (1590), Expect = e-173
 Identities = 341/680 (50%), Positives = 459/680 (67%), Gaps = 2/680 (0%)
 Frame = -2

Query: 2332 TSSSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLIL 2153
            T+S VKC+FV M+ V S D       IL  K++ +ARS+FMHV NLSS + YMARFSLIL
Sbjct: 319  TTSPVKCFFVRMESVASIDNQDY---ILSGKTIRQARSIFMHVDNLSSLSNYMARFSLIL 375

Query: 2152 SKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNI 1973
            SKT+ L++D + V ++ I D  CRD+DG +VY  DG+P I+TDGTGFIS DLALKCP+N 
Sbjct: 376  SKTMNLEVDLSFVDIKTIADEPCRDKDGNVVYGTDGKPLIYTDGTGFISHDLALKCPKNQ 435

Query: 1972 FKGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVN 1793
            FKG     S+ E++ +H         +E+      GDPPLLIQFR+F+NG AVKGT LVN
Sbjct: 436  FKGTCLRASNIERVNVHNEV------MEQYPECCNGDPPLLIQFRLFNNGRAVKGTFLVN 489

Query: 1792 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 1613
            KKL  +T+ +RPSMIKV +D   ++     NS E+V TS +PK+T LSK LI LLSYGGV
Sbjct: 490  KKLTHQTLHIRPSMIKVETD-PKLSSTFSKNSLEIVGTSSRPKKTVLSKNLIALLSYGGV 548

Query: 1612 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARL 1433
            P+ +F+ +L +ALED     ++K AALR AL+YG+MDD +VA MI CGIPL E +L+ RL
Sbjct: 549  PEEFFMGILNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHRL 608

Query: 1432 SVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGL 1253
            S+LM+ E KSLK GK+P+ +SYYLMGTADPTG+L+  +VC+IL+ GQ+SG++LVY++PGL
Sbjct: 609  SILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLVYRNPGL 668

Query: 1252 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSIADEIANSDLDGDMYWVCRNPQLL 1073
            H GDIH+L A YV+ELE++VGNAKY IFFP  GPRS+ADE++  D DGDM++V RNPQLL
Sbjct: 669  HVGDIHILKAKYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLL 728

Query: 1072 NWFRPSTPWTQKHFAKNVPQSKPADFSDEDRLEHYLFEKFLAARFS-SNNVGVAAICWLS 896
             +F+ + PWT      NVP  KP++FSDE+ LE  LF+ FL  RF  S+ VGVAA  WL+
Sbjct: 729  GYFKQTEPWTPSTSTPNVPNRKPSEFSDEE-LEVELFKLFLRNRFQPSSTVGVAADSWLA 787

Query: 895  LMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAK-SGKKIVIPPKLRQQKTPHFMQ 719
            +MD  LTL     E+I  V++ +  L DIYYDALD  K  G++I +P  L+ +  PHFM 
Sbjct: 788  MMDRVLTLGNDCTEEIACVKENINLLIDIYYDALDAPKRGGRRIEVPEGLKAELFPHFM- 846

Query: 718  NKSPGSSGLNNSAQSWRKDNSYQSTSILGQIFDEVEAFEEFGNQQVIEVDKLPSFEQVVP 539
                   G N       +  +Y+STSILG+I+D+V+A+E+  +    +V KLP F+  V 
Sbjct: 847  -------GKN-------EKQTYRSTSILGKIYDKVKAYEDM-DLSSNDVWKLPCFDDEVQ 891

Query: 538  EDRIAFWTEQHNMYRTEMRHALNNEAVKDQFADLGSQNNQASAAVYQKYKQILYHAPELD 359
            E  +  W E +  YR EM  AL            G ++N  +  V +KYK++LY A E +
Sbjct: 892  ELYLVKWKELYGQYRKEMCIALK----------AGEESNDKANEVIKKYKELLYEAAEFN 941

Query: 358  QSPRKEEDIYT*TLLPYIMS 299
             S R++E+I+   +  Y +S
Sbjct: 942  LSKRRDEEIFEEAVALYQVS 961