BLASTX nr result

ID: Papaver29_contig00023060 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00023060
         (532 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010663333.1| PREDICTED: zinc finger RNA-binding protein i...    54   2e-09
ref|XP_002284718.1| PREDICTED: zinc finger RNA-binding protein [...    47   5e-07
ref|XP_003634307.1| PREDICTED: zinc finger protein 385A isoform ...    43   5e-06

>ref|XP_010663333.1| PREDICTED: zinc finger RNA-binding protein isoform X1 [Vitis
           vinifera]
          Length = 322

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
 Frame = -1

Query: 523 PIFFRGEVQCERSQQQITRREMSNERNRSTTMPAELAIQRKLEVQRKMWNLQS---GFKF 353
           P+    + Q ER  +++T ++  ++  R   MP ELA++R+   ++K+  + S   G + 
Sbjct: 63  PLLSPSDPQVERISEEVTEKKRMDDGRRGDVMPLELAMKRESAYRKKVEMMLSQLYGGES 122

Query: 352 QERPVLLQ--GSTPNQ--NIAKVKEMAPFINLGYPLPRKAKQQYY-------QKNPLFCK 206
           +E P   Q   S+P+   +++  K   P       LP +  Q  Y       +K+ LFCK
Sbjct: 123 REDPFSSQVPSSSPSSGPSLSGPKRKTP-TRTSQCLPPQQLQLLYSSHTLGNRKDDLFCK 181

Query: 205 DCGVLCSSAKTLKMHYGGKRHATVVNVKA 119
            C V C S+  LK H  G++H   +++K+
Sbjct: 182 VCQVACPSSFHLKQHLIGQKHKDTLDLKS 210



 Score = 34.3 bits (77), Expect(2) = 2e-09
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 84  CEVCLVPCTDEDSLQRHLSGKKHAANVE 1
           C++C + C ++ SL++H  GKKH  NV+
Sbjct: 225 CDLCKIWCINKYSLEQHFKGKKHQDNVQ 252


>ref|XP_002284718.1| PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
           gi|731425631|ref|XP_010663328.1| PREDICTED: zinc finger
           RNA-binding protein [Vitis vinifera]
           gi|731425634|ref|XP_010663330.1| PREDICTED: zinc finger
           RNA-binding protein [Vitis vinifera]
           gi|731425636|ref|XP_010663331.1| PREDICTED: zinc finger
           RNA-binding protein [Vitis vinifera]
           gi|731425638|ref|XP_010663332.1| PREDICTED: zinc finger
           RNA-binding protein [Vitis vinifera]
          Length = 223

 Score = 47.0 bits (110), Expect(2) = 5e-07
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
 Frame = -1

Query: 442 RSTTMPAELAIQRKL----EVQRKMWNLQSGFKFQERPVLLQGSTPNQN--IAKVKEMAP 281
           R   MP ELA++R+L    +V R +  L  G   +E PV      P+     + +K  AP
Sbjct: 5   RGEVMPLELAMKRELAYRKKVDRLLLQLHGGVS-RENPVPSSSPRPSSGSKFSGIKRKAP 63

Query: 280 FINLGYPLPRKAKQQY-------YQKNPLFCKDCGVLCSSAKTLKMHYGGKRH 143
             +     PR+  Q          Q++ LFCK C V CS A +LK H  G++H
Sbjct: 64  TSSFNCQ-PRQMLQPVDHSNTLKTQRDDLFCKVCQVPCSGANSLKQHLLGQKH 115



 Score = 33.5 bits (75), Expect(2) = 5e-07
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 96  RELVCEVCLVPCTDEDSLQRHLSGKKHAANVE 1
           + L CE+C + C +++S + HL GKKH +  +
Sbjct: 135 QRLWCELCKIWCMNKNSFKDHLKGKKHQSRAQ 166


>ref|XP_003634307.1| PREDICTED: zinc finger protein 385A isoform X2 [Vitis vinifera]
           gi|297733926|emb|CBI15173.3| unnamed protein product
           [Vitis vinifera]
          Length = 238

 Score = 42.7 bits (99), Expect(2) = 5e-06
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
 Frame = -1

Query: 454 NERNRSTTMPAELAIQRKLEVQRKMWNLQS---GFKFQERPVLLQ--GSTPNQ--NIAKV 296
           ++  R   MP ELA++R+   ++K+  + S   G + +E P   Q   S+P+   +++  
Sbjct: 2   DDGRRGDVMPLELAMKRESAYRKKVEMMLSQLYGGESREDPFSSQVPSSSPSSGPSLSGP 61

Query: 295 KEMAPFINLGYPLPRKAKQQYY-------QKNPLFCKDCGVLCSSAKTLKMHYGGKRHAT 137
           K   P       LP +  Q  Y       +K+ LFCK C V C S+  LK H  G++H  
Sbjct: 62  KRKTP-TRTSQCLPPQQLQLLYSSHTLGNRKDDLFCKVCQVACPSSFHLKQHLIGQKHKD 120

Query: 136 VVNVKA 119
            +++K+
Sbjct: 121 TLDLKS 126



 Score = 34.3 bits (77), Expect(2) = 5e-06
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 84  CEVCLVPCTDEDSLQRHLSGKKHAANVE 1
           C++C + C ++ SL++H  GKKH  NV+
Sbjct: 141 CDLCKIWCINKYSLEQHFKGKKHQDNVQ 168


Top