BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00022547
         (1789 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     194   9e-61
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   235   1e-58
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   233   6e-58
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   232   9e-58
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        218   1e-53
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               218   1e-53
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                218   1e-53
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     218   1e-53
emb|CDP17738.1| unnamed protein product [Coffea canephora]            217   3e-53
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     211   2e-51
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   211   2e-51
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   211   2e-51
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   209   9e-51
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   209   9e-51
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        205   9e-50
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         202   8e-49
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   202   8e-49
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           202   8e-49
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   200   3e-48
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   199   5e-48

>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  194 bits (493), Expect(2) = 9e-61
 Identities = 109/271 (40%), Positives = 156/271 (57%), Gaps = 4/271 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C Y ++  H  ++C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 236  CKYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAG 292

Query: 239  -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
             +  +D W+LD+  +YHMC ++D F TY  V GGT +MG+   C+   V TVQ++   G 
Sbjct: 293  CAQTSDQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGC 352

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
            I TLS+VRH+P+L++SLISL  L+   YKY    G LKV     + M  + +  NLY ++
Sbjct: 353  IRTLSDVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVR 412

Query: 590  GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            G  + G    VS S+       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEH
Sbjct: 413  GTTILGNIAAVSDSLYNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEH 470

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWG 859
            CIFGK  R  F T  H T  +LDY+HSD+WG
Sbjct: 471  CIFGKHKRVKFNTSTHTTESILDYVHSDLWG 501



 Score = 69.7 bits (169), Expect(2) = 9e-61
 Identities = 36/75 (48%), Positives = 45/75 (60%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  RA K IFLGYP GVK Y+LWCP+  K +IS +V
Sbjct: 536  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCPKTKKVVISRNV 589

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  ML  K  T+
Sbjct: 590  VFHESVMLHDKPSTN 604



 Score =  140 bits (352), Expect(2) = 1e-33
 Identities = 75/132 (56%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
 Frame = +1

Query: 1399 DEVSSQEC--TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQR 1572
            DE+ S E   TWELVKLPK++  I CKW++  K G+  S       RYK RLVAKGY+Q 
Sbjct: 716  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPS----DEARYKARLVAKGYSQI 771

Query: 1573 EGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EV 1752
             G+D+N+VFS V+KH+SIR LL+ V   D ELEQ+DVKT FLHG L+EDIYM QP    V
Sbjct: 772  PGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVV 831

Query: 1753 AGKEDYVCRLEK 1788
             GKE+ V RL+K
Sbjct: 832  PGKENLVYRLKK 843



 Score = 33.5 bits (75), Expect(2) = 1e-33
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 1301 SYAFSVFED-----ESFTFEEAMSNTHAVEWKTAMDEEMKSLHKN 1420
            +YA SV E+     E  T+ EA+ +     W TAM +EM+SL KN
Sbjct: 680  AYALSVAEEIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKN 724


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  235 bits (599), Expect = 1e-58
 Identities = 119/277 (42%), Positives = 174/277 (62%), Gaps = 1/277 (0%)
 Frame = +2

Query: 50   DIECYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTV 229
            D  C YC++  H + DC K      K+++S+ ++V A+VAE     E+ +       L  
Sbjct: 222  DDVCNYCKEKGHWKFDCPK------KKKQSEKQSVSAAVAEEDTNSEEDIA------LVA 269

Query: 230  TSKSYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH- 406
               ++ +D W+LDSG SYH+CP ++ F TY +V+GG+  M NS+ CK V  G++++R+H 
Sbjct: 270  DEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHD 329

Query: 407  GVITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFL 586
            G   TL+EVRHVP + K+LISL +L+S G+ +  + G L+V+   +L + G   G LYFL
Sbjct: 330  GSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFL 389

Query: 587  QGDIVCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            QG  V G   V+ S +  Q + T+LWH+RLGHM  +GM +LS + L+ G K   L+FCEH
Sbjct: 390  QGSTVTGSAHVASS-EFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEH 448

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            C+FGK  R+ F   +H+T G LDYIHSD WGP R+ S
Sbjct: 449  CVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVES 485



 Score =  151 bits (381), Expect = 2e-33
 Identities = 78/133 (58%), Positives = 100/133 (75%), Gaps = 2/133 (1%)
 Frame = +1

Query: 1396 GDEVSS--QECTWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQ 1569
            GDE+ S  +  TW+LV  P  R  I CKWV+  K+GI  ++GV    +YK R+VA+G+ Q
Sbjct: 811  GDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGV----KYKARVVARGFNQ 866

Query: 1570 REGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*E 1749
            REGVDYNE+FS VV+HTSIRVLLA V   +LELEQLDVKT FLHG L+E+IYM+QP   +
Sbjct: 867  REGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQ 926

Query: 1750 VAGKEDYVCRLEK 1788
            V GKE++VC+L+K
Sbjct: 927  VPGKENHVCKLKK 939



 Score = 60.5 bits (145), Expect = 5e-06
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAML 1040
            AY+HV E KL  RAKK +F+GY  GVKG+R+W P   + I+S +V F+E  +L
Sbjct: 644  AYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLL 696


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  233 bits (593), Expect = 6e-58
 Identities = 120/275 (43%), Positives = 164/275 (59%), Gaps = 1/275 (0%)
 Frame = +2

Query: 56  ECYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTS 235
           EC +C +  H + DC KL    +K+EK       A+VAE    +E      D  ++   S
Sbjct: 169 ECAFCHEKGHWKKDCPKL----QKKEKVPQD---ANVAECKSDVES-----DISLIVSLS 216

Query: 236 KSYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
            S   D W+LDSG +YHMCP +D F  ++E++GG   MGN N CKTV +G++++R+H G 
Sbjct: 217 ASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGS 276

Query: 413 ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQG 592
              L +VR+VP L+K+LISLG LES G       G LK      + + G    NLY+ QG
Sbjct: 277 TRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYYQG 336

Query: 593 DIVCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCI 772
             V G    + S  +K  E  +LWHMRLGH   K + +L+ +GL+ G K CKL+FCEHC+
Sbjct: 337 STVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCV 396

Query: 773 FGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            GKQ R  FGT +H T G+LDY+HSDVWGP++  S
Sbjct: 397 LGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPS 431



 Score = 73.2 bits (178), Expect = 7e-10
 Identities = 35/53 (66%), Positives = 40/53 (75%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAML 1040
            AY+HV E KL  RAKKA+F+G+  GVKGYRLWC E  K IIS DVTF+E  ML
Sbjct: 591  AYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVML 643


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  232 bits (591), Expect = 9e-58
 Identities = 117/275 (42%), Positives = 164/275 (59%), Gaps = 1/275 (0%)
 Frame = +2

Query: 56  ECYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTS 235
           EC +C +  H + DC KL+ +++  +        A+VAE    +E      D  ++   S
Sbjct: 170 ECAFCHEKGHWKKDCPKLQKKEKVLQD-------ANVAECKSDVES-----DISLIVSLS 217

Query: 236 KSYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
            S   D W+LDSG +YHMCP +D F  ++E++GG   MGN N CKTV +G++++R+H G 
Sbjct: 218 ASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGS 277

Query: 413 ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQG 592
              L +VR+VP L+K+LISLG LES G       G LK      + + G    NLY+ QG
Sbjct: 278 TRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQG 337

Query: 593 DIVCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCI 772
             V G    + S  +K  E T+LWHMRLGH   K + + + +GL+ G K CKL+FCEHC+
Sbjct: 338 STVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCV 397

Query: 773 FGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            GKQ R  FGT +H T G+LDY+HSDVWGP++  S
Sbjct: 398 LGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPS 432



 Score = 75.1 bits (183), Expect = 2e-10
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAML 1040
            AY+HV E KL  RAKKA+F+G+  GVKGYRLWC E  K IIS DVTF+E AML
Sbjct: 645  AYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEAKKTIISRDVTFDESAML 697



 Score = 40.8 bits (94), Expect(2) = 3e-06
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +2

Query: 1217 QQQVENIPSLTSQRERRAPVLYGFDEFASYAFSVFEDESFTFEEAMSNTHAVEWKTAMDE 1396
            + Q ++ P    ++ R       F +  +YA  V +D   T+ EA+ ++ +  W  AM+E
Sbjct: 752  ESQQQSAPIAVRRQRRDIQKPSRFMDMVAYALPVVDDIPSTYPEAIMSSESGNWAGAMEE 811

Query: 1397 EMKSLHKN 1420
            EM+SL KN
Sbjct: 812  EMQSLKKN 819



 Score = 40.0 bits (92), Expect(2) = 3e-06
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +1

Query: 1423 TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKER 1545
            TW+L +LPK +  IGCKWV+  K+   + +     VRYK R
Sbjct: 821  TWKLAQLPKGKKAIGCKWVFAKKEEFSNKE----DVRYKAR 857


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  218 bits (556), Expect = 1e-53
 Identities = 118/277 (42%), Positives = 163/277 (58%), Gaps = 4/277 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C YC++  H  + C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 236  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKS---DAELLVAYAG 292

Query: 239  -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
             +  +D W+LD+  +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G 
Sbjct: 293  CAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 352

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
            I TLS+VRH+P+L++SLISL  L+  GYKY    G LKV     + M    +  NLY LQ
Sbjct: 353  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQ 412

Query: 590  GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            G  + G    VS S+       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEH
Sbjct: 413  GTTILGNVATVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEH 470

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            CIFGK  R  F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 471  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTS 507



 Score = 82.8 bits (203), Expect = 9e-13
 Identities = 50/122 (40%), Positives = 60/122 (49%)
 Frame = +1

Query: 1423 TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQREGVDYNEVFS 1602
            TWELVKLPK++  I CKW++  K+G+  S       RYK  +VA                
Sbjct: 793  TWELVKLPKEKKHIRCKWIFKRKEGMSPS----DEARYKASIVAM--------------- 833

Query: 1603 LVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EVAGKEDYVCRL 1782
                              D ELEQ+DVKT FLHG L+EDIYM QP    V GKE+ VCR 
Sbjct: 834  -----------------HDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRD 876

Query: 1783 EK 1788
             K
Sbjct: 877  SK 878



 Score = 70.5 bits (171), Expect = 5e-09
 Identities = 34/60 (56%), Positives = 39/60 (65%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAMLDSKKFTD 1061
            AY HV   KL  RA K IFLGYP  VKGY+LWCPE  K +IS +V F+E  ML  K  T+
Sbjct: 665  AYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTN 724


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  218 bits (555), Expect = 1e-53
 Identities = 118/277 (42%), Positives = 164/277 (59%), Gaps = 4/277 (1%)
 Frame = +2

Query: 59  CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
           C YC++  H  + C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 53  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKS---DAELLVAYAG 109

Query: 239 -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
            +  +D W+LD+  +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G 
Sbjct: 110 CAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 169

Query: 413 ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
           I TLS+VRH+P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY LQ
Sbjct: 170 IRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQ 229

Query: 590 GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
           G  + G    VS S+       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEH
Sbjct: 230 GTTILGNVATVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEH 287

Query: 767 CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
           CIFGK  R  F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 288 CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTS 324



 Score =  145 bits (365), Expect = 2e-31
 Identities = 72/122 (59%), Positives = 88/122 (72%)
 Frame = +1

Query: 1423 TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQREGVDYNEVFS 1602
            TWELVKLPK+   I CKW++  K+G+  S       RYK RLVAKGY+Q  G+D+N++FS
Sbjct: 605  TWELVKLPKENKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDIFS 660

Query: 1603 LVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EVAGKEDYVCRL 1782
             VVKH+SIR LL+ V   D ELEQ+DVKT FLHG L+EDIYM QP    V GKE+ VCRL
Sbjct: 661  PVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRL 720

Query: 1783 EK 1788
            +K
Sbjct: 721  KK 722



 Score = 70.1 bits (170), Expect = 6e-09
 Identities = 34/60 (56%), Positives = 38/60 (63%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAMLDSKKFTD 1061
            AY HV   KL  R  K IFLGYP GVKGY+LWCPE  K +IS  V F+E  ML  K  T+
Sbjct: 483  AYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTN 542


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  218 bits (555), Expect = 1e-53
 Identities = 118/277 (42%), Positives = 164/277 (59%), Gaps = 4/277 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C YC++  H  + C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 221  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKS---DAELLVAYAG 277

Query: 239  -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
             +  +D W+LD+  +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G 
Sbjct: 278  CAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 337

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
            I TLS+VRH+P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY LQ
Sbjct: 338  IRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQ 397

Query: 590  GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            G  + G    VS S+       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEH
Sbjct: 398  GTTILGNVATVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEH 455

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            CIFGK  R  F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 456  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTS 492



 Score =  145 bits (365), Expect = 2e-31
 Identities = 72/122 (59%), Positives = 88/122 (72%)
 Frame = +1

Query: 1423 TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQREGVDYNEVFS 1602
            TWELVKLPK+   I CKW++  K+G+  S       RYK RLVAKGY+Q  G+D+N++FS
Sbjct: 773  TWELVKLPKENKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDIFS 828

Query: 1603 LVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EVAGKEDYVCRL 1782
             VVKH+SIR LL+ V   D ELEQ+DVKT FLHG L+EDIYM QP    V GKE+ VCRL
Sbjct: 829  PVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRL 888

Query: 1783 EK 1788
            +K
Sbjct: 889  KK 890



 Score = 70.1 bits (170), Expect = 6e-09
 Identities = 34/60 (56%), Positives = 38/60 (63%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAMLDSKKFTD 1061
            AY HV   KL  R  K IFLGYP GVKGY+LWCPE  K +IS  V F+E  ML  K  T+
Sbjct: 651  AYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTN 710


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  218 bits (555), Expect = 1e-53
 Identities = 116/277 (41%), Positives = 165/277 (59%), Gaps = 4/277 (1%)
 Frame = +2

Query: 59  CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
           C YC++  H  ++C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 145 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKS---DAELLVAYAG 201

Query: 239 -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
            +  +D W+LD+  +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G 
Sbjct: 202 CAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 261

Query: 413 ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
           I TL +VRH+P+L++SLISL  L+  GYKY    G LKV     + M  + ++ NLY L+
Sbjct: 262 IRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLR 321

Query: 590 GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
           G  + G    VS S+       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEH
Sbjct: 322 GTTILGNVAAVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEH 379

Query: 767 CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
           CIFGK  R  F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 380 CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTS 416



 Score =  143 bits (361), Expect(2) = 2e-34
 Identities = 75/132 (56%), Positives = 93/132 (70%), Gaps = 2/132 (1%)
 Frame = +1

Query: 1399 DEVSSQEC--TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQR 1572
            DE+ S E   +WEL KLPK++  I CKW++  K+G+  S       RYK RLVAKGY+Q 
Sbjct: 746  DEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQI 801

Query: 1573 EGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EV 1752
             G+D+N+VFS VVKH+SIR LL+ V   D ELEQ+DVKT FLHG L+EDIYM QP    V
Sbjct: 802  PGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVV 861

Query: 1753 AGKEDYVCRLEK 1788
             GKE+ VCRL+K
Sbjct: 862  PGKENLVCRLKK 873



 Score = 32.7 bits (73), Expect(2) = 2e-34
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 1301 SYAFSVFED-----ESFTFEEAMSNTHAVEWKTAMDEEMKSLHKN 1420
            +YA SV E+     E  T+ +A+ +     W TAM +EM+SL KN
Sbjct: 710  AYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKN 754



 Score = 68.2 bits (165), Expect = 2e-08
 Identities = 36/75 (48%), Positives = 44/75 (58%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  R  K IFLGY  GVKGY+LWCPE  K +IS +V
Sbjct: 566  SDLRVFGCT------AYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNV 619

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  ML  K  T+
Sbjct: 620  VFHESIMLHDKPSTN 634


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  217 bits (552), Expect = 3e-53
 Identities = 119/276 (43%), Positives = 163/276 (59%), Gaps = 2/276 (0%)
 Frame = +2

Query: 56   ECYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTS 235
            EC +CR+  H + DC KLK   +K +     NV       +E   D    F   V  +TS
Sbjct: 255  ECAFCREKGHWKKDCPKLK---KKGKAPQDVNV-------AECKSDAESDFSLAVSRLTS 304

Query: 236  KSYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
                 D W+LDS  +YHM P ++ F  + E++GG   MGN N CKTV +G++++R+H G 
Sbjct: 305  HP---DEWILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGS 361

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQG 592
               L +VR+VP+L++SLISLG+LES G +     G LKV     L + G R  NLY+ QG
Sbjct: 362  TRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQG 421

Query: 593  DIVCGGDMVS-QSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHC 769
              V G   V+  S  +K  E T+LWHMRLG    K +  L+ +GL+ G K CKL+FCEHC
Sbjct: 422  STVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHC 481

Query: 770  IFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            +  KQ +  FGT +H T G+LDY+HSDVWGP++  S
Sbjct: 482  VLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPS 517



 Score = 71.6 bits (174), Expect = 2e-09
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAMLD 1043
            AY+HV E KL  RAKKA+F+G+  GVKGYRLW  E  K IIS DVTF+E  ML+
Sbjct: 677  AYYHVNESKLDPRAKKALFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVMLN 730


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  211 bits (537), Expect = 2e-51
 Identities = 113/273 (41%), Positives = 162/273 (59%), Gaps = 4/273 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C YC++  H  ++C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 271  CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKS---DTELLVAYAG 327

Query: 239  -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
             +  +D W+LD+  +YHMCP++D F TY  + GGT +MG+   C+   +GTVQ++   G 
Sbjct: 328  CAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGY 387

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
            I TLS+VRH+P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY L+
Sbjct: 388  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 447

Query: 590  GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            G  + G    VS S+       T LWHMRLGHMS  G++ LS + L+ G+   KL FCEH
Sbjct: 448  GTTILGNVAAVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEH 505

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPS 865
            CIFGK  R  F T  H T G+LDY+HSD+WGP+
Sbjct: 506  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 538



 Score =  143 bits (360), Expect(2) = 1e-34
 Identities = 73/132 (55%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
 Frame = +1

Query: 1399 DEVSS--QECTWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQR 1572
            DE+ S  +  TWE VKLPK++  I CKW++  K+G+  S       RYK RLVAKGY+Q 
Sbjct: 872  DEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQI 927

Query: 1573 EGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EV 1752
             G+D+N+VFS ++KH+SIR LL  V   D ELEQ+DVKT FLHG L+EDIYM QP    V
Sbjct: 928  PGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVV 987

Query: 1753 AGKEDYVCRLEK 1788
             GKE+ VCRL+K
Sbjct: 988  LGKENLVCRLKK 999



 Score = 33.5 bits (75), Expect(2) = 1e-34
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 1301 SYAFSVFED-----ESFTFEEAMSNTHAVEWKTAMDEEMKSLHKN 1420
            +YA SV E+     E  T+ EA+ +     W TAM +EM+SL KN
Sbjct: 836  AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKN 880



 Score = 72.4 bits (176), Expect = 1e-09
 Identities = 37/75 (49%), Positives = 46/75 (61%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 692  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 745

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  +L  K  T+
Sbjct: 746  VFHESVILHDKPSTN 760


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  211 bits (537), Expect = 2e-51
 Identities = 111/273 (40%), Positives = 160/273 (58%), Gaps = 3/273 (1%)
 Frame = +2

Query: 59  CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
           C YC++  H  +DC KL+  ++++ K + K       +G   +        E ++     
Sbjct: 178 CKYCKRGGHDISDCWKLQ--NKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGC 235

Query: 239 SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVI 415
              +D W+LD+G +YHMCP++D F TY  V GG  +MG++  CK   VGT+Q++   G I
Sbjct: 236 VQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCI 295

Query: 416 TTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQG 592
            TLS+VRH+P L+++LISL  L+  GY+Y    G LKV     + M  + ++ +LY LQG
Sbjct: 296 RTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQG 355

Query: 593 DIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHC 769
             + G    V+ S+         LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHC
Sbjct: 356 TTIVGNVAAVTDSLSNSD-----LWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHC 410

Query: 770 IFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSR 868
           IFGK  R  F T  H T G+LDY+HSD+WGP+R
Sbjct: 411 IFGKHKRVKFTTSTHTTEGILDYVHSDLWGPAR 443



 Score = 80.9 bits (198), Expect = 4e-12
 Identities = 41/61 (67%), Positives = 45/61 (73%)
 Frame = +1

Query: 1606 VVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EVAGKEDYVCRLE 1785
            VVKH+SIR LL  V   D ELEQLDVKT FLHG L+EDIYM QP    V GKE+ VCRL+
Sbjct: 751  VVKHSSIRTLLGIVAIHDYELEQLDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLD 810

Query: 1786 K 1788
            K
Sbjct: 811  K 811



 Score = 73.2 bits (178), Expect = 7e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%)
 Frame = +3

Query: 882  AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFNEKAMLDSKKFTD 1061
            AY HV   KL  RA K IFLGYP GVK Y+LWCPE  K +IS +V FNE  ML+ K  T+
Sbjct: 605  AYAHVDNGKLEPRAIKCIFLGYPSGVKAYKLWCPETQKVVISRNVIFNETVMLNDKSSTN 664


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  211 bits (537), Expect = 2e-51
 Identities = 113/273 (41%), Positives = 162/273 (59%), Gaps = 4/273 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C YC++  H  ++C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 271  CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKS---DTELLVAYAG 327

Query: 239  -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
             +  +D W+LD+  +YHMCP++D F TY  + GGT +MG+   C+   +GTVQ++   G 
Sbjct: 328  CAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGY 387

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
            I TLS+VRH+P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY L+
Sbjct: 388  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 447

Query: 590  GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            G  + G    VS S+       T LWHMRLGHMS  G++ LS + L+ G+   KL FCEH
Sbjct: 448  GTTILGNVAAVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEH 505

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPS 865
            CIFGK  R  F T  H T G+LDY+HSD+WGP+
Sbjct: 506  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 538



 Score =  143 bits (360), Expect(2) = 1e-34
 Identities = 73/132 (55%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
 Frame = +1

Query: 1399 DEVSS--QECTWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQR 1572
            DE+ S  +  TWE VKLPK++  I CKW++  K+G+  S       RYK RLVAKGY+Q 
Sbjct: 872  DEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQI 927

Query: 1573 EGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EV 1752
             G+D+N+VFS ++KH+SIR LL  V   D ELEQ+DVKT FLHG L+EDIYM QP    V
Sbjct: 928  PGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVV 987

Query: 1753 AGKEDYVCRLEK 1788
             GKE+ VCRL+K
Sbjct: 988  LGKENLVCRLKK 999



 Score = 33.5 bits (75), Expect(2) = 1e-34
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 1301 SYAFSVFED-----ESFTFEEAMSNTHAVEWKTAMDEEMKSLHKN 1420
            +YA SV E+     E  T+ EA+ +     W TAM +EM+SL KN
Sbjct: 836  AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKN 880



 Score = 72.4 bits (176), Expect = 1e-09
 Identities = 37/75 (49%), Positives = 46/75 (61%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 692  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 745

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  +L  K  T+
Sbjct: 746  VFHESVILHDKPSTN 760


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  209 bits (531), Expect = 9e-51
 Identities = 114/277 (41%), Positives = 161/277 (58%), Gaps = 4/277 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C YC++  H   +C KL  +D++  K   K       + + V ++     D E+L   + 
Sbjct: 443  CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAG 499

Query: 239  -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
             +  +D W+L++   YHMCP++D F TY  V  GT +MG+   C+   +GTVQ++   G 
Sbjct: 500  CAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGC 559

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
            I TLS+VRH+P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY L+
Sbjct: 560  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 619

Query: 590  GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            G  + G    VS S+       T LWHMRLGHM+  G++ LS +GL+ G+   KL FCEH
Sbjct: 620  GTTILGNVAAVSDSLSNSDA--TNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEH 677

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            CIFGK  R  F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 678  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTS 714



 Score =  148 bits (374), Expect(2) = 2e-36
 Identities = 77/132 (58%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
 Frame = +1

Query: 1399 DEVSSQEC--TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQR 1572
            DE+ S E   TWELVKLPK++  I CKW++  K+GI  S       RYK RL+AKGY+Q 
Sbjct: 1044 DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSS----DEARYKARLIAKGYSQI 1099

Query: 1573 EGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EV 1752
             G+D+N+VFS VVKH+SIR LL+ V   D ELEQ+DVKT FLHG L+EDIYM QP    V
Sbjct: 1100 PGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVV 1159

Query: 1753 AGKEDYVCRLEK 1788
             GKE+ VCRL+K
Sbjct: 1160 PGKENLVCRLKK 1171



 Score = 33.9 bits (76), Expect(2) = 2e-36
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 1301 SYAFSVFED-----ESFTFEEAMSNTHAVEWKTAMDEEMKSLHKN 1420
            +YA SV E+     E  T+ EA+ +     W TAM +EM+SL KN
Sbjct: 1008 AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKN 1052



 Score = 73.9 bits (180), Expect = 4e-10
 Identities = 38/75 (50%), Positives = 46/75 (61%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 864  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 917

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  ML  K  T+
Sbjct: 918  VFHESVMLHDKPSTN 932


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  209 bits (531), Expect = 9e-51
 Identities = 114/277 (41%), Positives = 161/277 (58%), Gaps = 4/277 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C YC++  H   +C KL  +D++  K   K       + + V ++     D E+L   + 
Sbjct: 236  CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAG 292

Query: 239  -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
             +  +D W+L++   YHMCP++D F TY  V  GT +MG+   C+   +GTVQ++   G 
Sbjct: 293  CAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGC 352

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQ 589
            I TLS+VRH+P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY L+
Sbjct: 353  IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 412

Query: 590  GDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            G  + G    VS S+       T LWHMRLGHM+  G++ LS +GL+ G+   KL FCEH
Sbjct: 413  GTTILGNVAAVSDSLSNSDA--TNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEH 470

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            CIFGK  R  F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 471  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTS 507



 Score = 73.9 bits (180), Expect = 4e-10
 Identities = 38/75 (50%), Positives = 46/75 (61%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 657  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 710

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  ML  K  T+
Sbjct: 711  VFHESVMLHDKPSTN 725


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  205 bits (522), Expect = 9e-50
 Identities = 114/279 (40%), Positives = 164/279 (58%), Gaps = 3/279 (1%)
 Frame = +2

Query: 56   ECYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTS 235
            +C+YCRK  H   DC      ++K+++S  K+  A+VA      +D   G+    L V S
Sbjct: 235  KCFYCRKEGHYIRDCF-----EKKKKESQEKSGDAAVAS-----DDGSDGYQSADLLVAS 284

Query: 236  KSYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH--- 406
             S     W++DSG S+H+CP K  F  Y  V+GG  +MGN+N C  V +   + RS    
Sbjct: 285  NSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCK-RSRCLM 343

Query: 407  GVITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFL 586
             ++ +L EVRH P L+++LISLG+L+SLGY + +  G L+V     + M G     LY L
Sbjct: 344  ELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVL 403

Query: 587  QGDIVCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEH 766
            QG  V   + VS   +E +   T+LWH+RLGHMS KG+  LS +GL+GG++  +L+FCE+
Sbjct: 404  QGSSVPVQEGVSAVSEEDR---TKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCEN 460

Query: 767  CIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVSKS 883
            CIFGK  RS F    H +  +LDY H D WGP+++ S S
Sbjct: 461  CIFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLS 499



 Score =  144 bits (363), Expect = 3e-31
 Identities = 74/132 (56%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
 Frame = +1

Query: 1399 DEVSS--QECTWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQR 1572
            DE+ S  +  TW L+  P ++  I CKW++   +GIPD    V   +YK RLVA+G+ QR
Sbjct: 835  DEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPD----VEPPKYKARLVARGFTQR 890

Query: 1573 EGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EV 1752
            EGVD+NE+FS VVKH+SIR+LLA V   DLELEQ+DVKT FLHGNL+E I M+QP   E 
Sbjct: 891  EGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFEC 950

Query: 1753 AGKEDYVCRLEK 1788
              KEDYVC L K
Sbjct: 951  KDKEDYVCLLHK 962



 Score = 69.7 bits (169), Expect = 8e-09
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = +3

Query: 840  SIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVT 1019
            ++R+FG P      AY H+ + KL  RA K +F+GYP GVKGY++WC +  K I+S DV 
Sbjct: 648  NLRVFGCP------AYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVV 701

Query: 1020 FNEKAML 1040
            F+E  +L
Sbjct: 702  FHESVLL 708


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  202 bits (514), Expect = 8e-49
 Identities = 112/268 (41%), Positives = 158/268 (58%), Gaps = 4/268 (1%)
 Frame = +2

Query: 86  IRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK-SYLNDGWM 262
           I AD   ++ +D++  K   K       + + V ++     D E+L   +  +  +D W+
Sbjct: 77  IVADLESMEDKDKRTGKYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWI 133

Query: 263 LDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRH 439
           LD+  +YHMCP++D F TY  V GGT +MG+   C+   +G VQ++   G I+TLS+VRH
Sbjct: 134 LDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRH 193

Query: 440 VPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-D 613
           +P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G   
Sbjct: 194 IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 253

Query: 614 MVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRS 793
            VS S+       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R 
Sbjct: 254 AVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRV 311

Query: 794 SFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 312 KFNTSTHTTEGILDYVHSDLWGPARKTS 339



 Score = 70.9 bits (172), Expect = 4e-09
 Identities = 37/75 (49%), Positives = 45/75 (60%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  RA K IFLGY  GVKGY+LWCPE  K +IS +V
Sbjct: 485  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVISRNV 538

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  ML  K  T+
Sbjct: 539  VFHESVMLHDKPSTN 553


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  202 bits (514), Expect = 8e-49
 Identities = 113/285 (39%), Positives = 162/285 (56%), Gaps = 19/285 (6%)
 Frame = +2

Query: 80   SHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEE-------------- 217
            S+ +A+ L +   + +R ++ ++ + A VA   +  + P  G  EE              
Sbjct: 193  SNSQAESLVVGVGNRRRTQTTNQEIKAQVATVGD--QSPEAGKKEEEGKAAVVTDEKSDA 250

Query: 218  --VLTVTSKSYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTV 391
              ++     +  +D W+LD+  +YHMCP++D F TY  V GGT +MG+   C+   +GTV
Sbjct: 251  ELLVAYVGCAQTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTV 310

Query: 392  QVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-R 565
            Q++   G I TLS+VRH+P+L++SLIS   L+  GYKY    G LKV     + M  + +
Sbjct: 311  QIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIK 370

Query: 566  HGNLYFLQGDIVCGG-DMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKT 742
              NLY L+G  + G    VS S+       T LWHMRLGHMS  G++ LS +GL+ G+  
Sbjct: 371  SANLYHLRGTTILGNVAAVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLYGQSI 428

Query: 743  CKLDFCEHCIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
             KL FCEHCIFGK  R  F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 429  GKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTS 473


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  202 bits (514), Expect = 8e-49
 Identities = 112/268 (41%), Positives = 158/268 (58%), Gaps = 4/268 (1%)
 Frame = +2

Query: 86  IRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK-SYLNDGWM 262
           I AD   ++ +D++  K   K       + + V ++     D E+L   +  +  +D W+
Sbjct: 77  IVADLESMEDKDKRTGKYVPKGKKEEEGKAAVVTDEKS---DAELLVAYAGCAQTSDQWI 133

Query: 263 LDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRH 439
           LD+  +YHMCP++D F TY  V GGT +MG+   C+   +G VQ++   G I+TLS+VRH
Sbjct: 134 LDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRH 193

Query: 440 VPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-D 613
           +P+L++SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G   
Sbjct: 194 IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 253

Query: 614 MVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRS 793
            VS S+       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R 
Sbjct: 254 AVSDSLSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRV 311

Query: 794 SFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
            F T  H T G+LDY+HSD+WGP+R  S
Sbjct: 312 KFNTSTHTTEGILDYVHSDLWGPARKTS 339



 Score = 70.9 bits (172), Expect = 4e-09
 Identities = 37/75 (49%), Positives = 45/75 (60%)
 Frame = +3

Query: 837  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 1016
            + +R+FG        AY HV   KL  RA K IFLGY  GVKGY+LWCPE  K +IS +V
Sbjct: 485  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVISRNV 538

Query: 1017 TFNEKAMLDSKKFTD 1061
             F+E  ML  K  T+
Sbjct: 539  VFHESVMLHDKPSTN 553


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  200 bits (509), Expect = 3e-48
 Identities = 109/273 (39%), Positives = 169/273 (61%), Gaps = 3/273 (1%)
 Frame = +2

Query: 59   CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
            C YC+K +H   +C KL+ ++++  KSD K  V + AE S+   D +  F   V +    
Sbjct: 236  CKYCKKKNHFIEECWKLQNKEKR--KSDGKASVVTSAENSDS-GDCLVVFAGCVAS---- 288

Query: 239  SYLNDGWMLDSGVSYHMCPSKDCFNTYREV-NGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
               +D W+LD+  S+H+C ++D F++Y+ V NG    MG+ N  + V +G+VQ+++H G+
Sbjct: 289  ---HDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGM 345

Query: 413  ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHG-NLYFLQ 589
              TL +VRH+P + ++LISL  L++ GYKY +  G +KV     + M G+ +  NLY L+
Sbjct: 346  TRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLR 405

Query: 590  GDIVCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHC 769
            G  +  G + + ++ + +   T LWHMRLGHMS  GM+ L  + L+ G    K+ FCEHC
Sbjct: 406  GSTL-HGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHC 464

Query: 770  IFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSR 868
            +FGK  R  F T VH+T G+LDY+H+D+WGPSR
Sbjct: 465  VFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSR 497



 Score = 82.8 bits (203), Expect = 9e-13
 Identities = 48/122 (39%), Positives = 63/122 (51%)
 Frame = +1

Query: 1423 TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQREGVDYNEVFS 1602
            TWELV LPK +  + CKW++  K+G+  S+      R+K  +VA                
Sbjct: 805  TWELVHLPKQKKPVRCKWIFKRKEGLSSSEPP----RFKASIVAM--------------- 845

Query: 1603 LVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EVAGKEDYVCRL 1782
                              DLELEQLDVKT FL+G L+E+IYM QP    V GKEDYVC+L
Sbjct: 846  -----------------HDLELEQLDVKTAFLYGELEEEIYMDQPEGFIVPGKEDYVCKL 888

Query: 1783 EK 1788
            ++
Sbjct: 889  KR 890


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  199 bits (507), Expect = 5e-48
 Identities = 109/275 (39%), Positives = 155/275 (56%), Gaps = 2/275 (0%)
 Frame = +2

Query: 59  CYYCRKTSHIRADCLKLKARDEKREKSDSKNVVASVAEGSEVLEDPMCGFDEEVLTVTSK 238
           C YC++  H  ++C KL+ +D++  K   K       + + V ++     D E+L   + 
Sbjct: 178 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDEKS---DAELLVAYAG 234

Query: 239 -SYLNDGWMLDSGVSYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GV 412
            +  +D W+LD+  +YHMCP++D F TY  V GGT +MG+   C+   +G VQ++   G 
Sbjct: 235 CAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGC 294

Query: 413 ITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQG 592
           I TLS+VRH P+L++SLISL  L+  GYKY    G LK+                  + G
Sbjct: 295 IRTLSDVRHFPNLKRSLISLRTLDRKGYKYSGGDGILKL------------------ILG 336

Query: 593 DIVCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCI 772
           ++    D +S S      + T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCI
Sbjct: 337 NVAVVSDSLSNS------DATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCI 390

Query: 773 FGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVS 877
           FGK  R  F T  H T G LDY+HSD+WGP+R  S
Sbjct: 391 FGKHKRVKFNTSTHTTEGTLDYVHSDLWGPARKTS 425



 Score =  130 bits (326), Expect(2) = 7e-31
 Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1399 DEVSSQEC--TWELVKLPKDRMKIGCKWVYTVKDGIPDSKGVVSGVRYKERLVAKGYAQR 1572
            DE+ S E   TW+LVKLPK++  I CKW++  K+G+  +       RYK  LVAKGY+Q 
Sbjct: 672  DEMDSLEKNHTWKLVKLPKEKKLIHCKWIFKRKEGMSPT----DEARYKAMLVAKGYSQI 727

Query: 1573 EGVDYNEVFSLVVKHTSIRVLLAFVTRFDLELEQLDVKTTFLHGNLDEDIYMSQPID*EV 1752
             G+D+N+VFS VVKH+SIR LL+ V   D EL+Q+DVKT FLHG L+EDIYM QP    +
Sbjct: 728  PGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELDQMDVKTAFLHGELEEDIYMEQPEGFVI 787

Query: 1753 AGKED 1767
             GKE+
Sbjct: 788  PGKEN 792



 Score = 33.9 bits (76), Expect(2) = 7e-31
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +2

Query: 1253 QRERRAPVLYGFD-EFASYAFSVFED-----ESFTFEEAMSNTHAVEWKTAMDEEMKSLH 1414
            +R  R P  Y  +    +YA SV E+     E  T+ EA+ +     W TAM +EM SL 
Sbjct: 619  KRNTRPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMDSLE 678

Query: 1415 KN 1420
            KN
Sbjct: 679  KN 680



 Score = 70.5 bits (171), Expect = 5e-09
 Identities = 37/73 (50%), Positives = 44/73 (60%)
 Frame = +3

Query: 843  IRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTF 1022
            +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWC E  K +IS +V F
Sbjct: 528  LRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCSETKKVVISRNVVF 581

Query: 1023 NEKAMLDSKKFTD 1061
            +E  ML  K  T+
Sbjct: 582  HESVMLHDKPSTN 594