BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00008009
         (3839 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polyme...  1520   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1480   0.0  
ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polyme...  1462   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1453   0.0  
ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1452   0.0  
ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1451   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...  1444   0.0  
ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1439   0.0  
ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1439   0.0  
ref|XP_002281315.1| PREDICTED: probable RNA-dependent RNA polyme...  1427   0.0  
ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabi...  1414   0.0  
ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polyme...  1414   0.0  
emb|CDP05596.1| unnamed protein product [Coffea canephora]           1414   0.0  
ref|XP_012847562.1| PREDICTED: probable RNA-dependent RNA polyme...  1413   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1407   0.0  
ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1404   0.0  
ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1404   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1396   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...  1394   0.0  
ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [G...  1391   0.0  

>ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962527|ref|XP_010275424.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962530|ref|XP_010275500.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962533|ref|XP_010275583.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962536|ref|XP_010275643.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962539|ref|XP_010275710.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
          Length = 1136

 Score = 1520 bits (3936), Expect = 0.0
 Identities = 769/1148 (66%), Positives = 908/1148 (79%), Gaps = 8/1148 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTIH+ GFP+ VTAE +K+ LE YTG GTVYAL+V   KNKG    AF  +QFT+S +
Sbjct: 1    MGKTIHLSGFPANVTAEAVKELLERYTGDGTVYALKVRHHKNKGHARFAFVIVQFTTSGS 60

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            A+ ++ LVNR  RLY+G  YLKV   +RDI+ KPR+S+ +L+  TLHFGCQVS + F  L
Sbjct: 61   ADVITSLVNR--RLYYGTHYLKVRDVERDIVAKPRMSLLSLEHTTLHFGCQVSPEKFSVL 118

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +K  DV+V F FG R+L F LS         + YKL LSYE+IW+IQLR P+  N +FL+
Sbjct: 119  WKGADVAVRFEFGLRRLHFFLSQFP------IDYKLGLSYENIWQIQLRHPRGQNKKFLL 172

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRD--LQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQM   P+++ +   SL N   D  L YF    DDQW RTTDFT    IGQSSA+CL++P
Sbjct: 173  IQMFGVPRIFKKVKISLENMFEDPILNYFREP-DDQWDRTTDFTPLCCIGQSSALCLELP 231

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLV 2763
            Y   LPN RE F YY ED+G F ++ G+T SRS  LVP+VGP  G  + Y+ILFKV SLV
Sbjct: 232  YSYVLPNIREYFAYYKEDEGPFVLESGATFSRSLSLVPIVGPSQGSDIPYEILFKVCSLV 291

Query: 2762 QNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSA 2583
            QNGCLSG TLDA FFR+VDP    +++I  ALEKL+HLK+CCYEPV WLT+QY  Y    
Sbjct: 292  QNGCLSGPTLDAAFFRLVDPNFISIDYIENALEKLYHLKECCYEPVNWLTKQYRAYCTLK 351

Query: 2582 NPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDED 2403
             PP+  SISL DGLVYVRR+QITP KVYF GPE+ VSNRVLR Y  +IDNFIRISFVDED
Sbjct: 352  RPPKLPSISLDDGLVYVRRIQITPCKVYFCGPEVIVSNRVLREYSRYIDNFIRISFVDED 411

Query: 2402 SEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWM 2223
             +KI STD+S R +  +EK  T +YDRILSTL NG+VIGDKKF+FLAFS+SQLRDNSAWM
Sbjct: 412  LDKIHSTDISPRTSFANEKGHTEIYDRILSTLKNGIVIGDKKFDFLAFSSSQLRDNSAWM 471

Query: 2222 FASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIES 2043
            FAS    TAASIR WMGDF +IRNVAKYAARLGQSF SS ETL+VY +E E I D+++E 
Sbjct: 472  FASSNGYTAASIRQWMGDFSKIRNVAKYAARLGQSFSSSRETLNVYEHETEIIDDIKVEW 531

Query: 2042 NGTIYTFSDGIGKISSEFAHKVANKCGLKCT-PSAFQIRYGGYKGVVAVDPKAVKKLYLR 1866
             G  Y FSDGIGKIS++FA +VA KCG K + PSAFQIRYGGYKGVVAVDP + KKL LR
Sbjct: 532  RGIEYIFSDGIGKISADFAKQVAKKCGFKGSFPSAFQIRYGGYKGVVAVDPTSTKKLSLR 591

Query: 1865 KSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILT 1686
            +SM K+ S+NTKLDVLSWSK+QPCFLNRQ+I+LLSTLGV D IFEKKQKEA+DQLD+ILT
Sbjct: 592  RSMSKYESRNTKLDVLSWSKYQPCFLNRQIITLLSTLGVRDSIFEKKQKEAMDQLDAILT 651

Query: 1685 DPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFI 1506
            D L+A EALEIMSP E TNILKEMLLCGY+P+ EPFLSMMLQTFRA+KLLELRT+TRIF+
Sbjct: 652  DSLKAQEALEIMSPGENTNILKEMLLCGYEPNAEPFLSMMLQTFRASKLLELRTKTRIFV 711

Query: 1505 PKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVL-GKVVVA 1329
            P GRS++GCLDET TL+YG+VFVQVS +G  Q    S  + + N P     ++ GK++VA
Sbjct: 712  PNGRSLLGCLDETRTLKYGEVFVQVSSIGRRQFHESSLFVFSGNEPEQQKFIVEGKIIVA 771

Query: 1328 KNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQEL 1149
            KNPCLHPGD+R+L+AV+VPALHHMVDCVVFPQ+GKRPHPNECSGSDLDGDVYFVCWD +L
Sbjct: 772  KNPCLHPGDVRLLQAVNVPALHHMVDCVVFPQEGKRPHPNECSGSDLDGDVYFVCWDPDL 831

Query: 1148 IPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAE 969
            IPPRQ+QPM+Y   P++ LDHDV IEE+EEYF NY++N+SLG+IAN HTAFADKE  KAE
Sbjct: 832  IPPRQIQPMEYLPEPSVNLDHDVTIEEIEEYFTNYIVNESLGIIANAHTAFADKEPKKAE 891

Query: 968  SEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQV 789
            S+ C++LAKLFSIAVDFPKTGVPAEIP HL VKEYPDFMEKLD+PTY S+RVIGKLFR V
Sbjct: 892  SDACLQLAKLFSIAVDFPKTGVPAEIPQHLYVKEYPDFMEKLDKPTYVSERVIGKLFRAV 951

Query: 788  KDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKT 609
            KDIAP T  I+SFT EVA++ YD DMEVDGFEDYL DAY++KGE+D KL NLMDYYGIKT
Sbjct: 952  KDIAPQTWSIRSFTQEVARRSYDPDMEVDGFEDYLSDAYYYKGEYDSKLGNLMDYYGIKT 1011

Query: 608  EAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKA 429
            EAEIL G++MKLSKSF  +RDAE+ISLAVR+L+KEAR WF++KS       E DDVYAKA
Sbjct: 1012 EAEILSGNIMKLSKSFTKKRDAEAISLAVRSLRKEARAWFNEKS---GPGPEADDVYAKA 1068

Query: 428  SAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRK----HNWSLEDQ 261
            SAWYHVTYHP Y+GCY++ + RDHFLSFPWCVYDKLIHIK+  +  R+       SL  Q
Sbjct: 1069 SAWYHVTYHPDYWGCYNEGLKRDHFLSFPWCVYDKLIHIKREKASIRRIRIIDESSLGLQ 1128

Query: 260  FMSSLRLS 237
            F  SLRL+
Sbjct: 1129 FRRSLRLN 1136


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1480 bits (3832), Expect = 0.0
 Identities = 740/1145 (64%), Positives = 906/1145 (79%), Gaps = 6/1145 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI ++GFP+ VTAE +KDFLE+ TG GTVYAL++  PK KG   R +A +QFT+ + 
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK-KGVG-RLYAIVQFTTKEA 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            A+ +  L  R ++L++G SYL     ++D +P+PR  M  ++   LHFGC++SN+ F  L
Sbjct: 59   ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            ++  +V+V+FGFG RK+ F+LS+         +Y+LEL YE+IWEI+L  P+   +++L+
Sbjct: 119  WRGVNVTVNFGFGMRKINFLLSHLGE------EYRLELDYENIWEIELHCPRWQMTKYLL 172

Query: 3116 IQMLAAPKVYVEPLSS--LGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQ+L AP+++ + + S  L        +F    DDQWVRTTDFT S  IGQS+ +C+++P
Sbjct: 173  IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 232

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLV 2763
            Y  +LP+F+ENF YY E +  F ++ GS  SRS DLVP+VGPP G  L Y+ILFK+N LV
Sbjct: 233  YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 292

Query: 2762 QNGCLSGQTLDANFFRMVDPCSHPVNHIMC---ALEKLFHLKDCCYEPVKWLTEQYLEYS 2592
            QNGC++G  LD+NF+R+VDP   PV+ I C   AL+KL+HLK+CCYEP +WLT+QY +Y 
Sbjct: 293  QNGCVAGPLLDSNFYRLVDPYRAPVS-ISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 351

Query: 2591 LSANPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFV 2412
             S + P S +ISL DGLVYV RVQ+TP +VYF GPEINVSNRVLRH+   IDNF+RISF+
Sbjct: 352  TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 411

Query: 2411 DEDSEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNS 2232
            DED +KI STDLS R +   +  +T +Y RILSTL NG++IGD+KFEFLAFS+SQLR++S
Sbjct: 412  DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 471

Query: 2231 AWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVE 2052
            AWMFAS+  LTAA IR+WMG+FREIRNVAKYAARLGQSF SS ETLSV+ +EIE I DV+
Sbjct: 472  AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 531

Query: 2051 IESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTP-SAFQIRYGGYKGVVAVDPKAVKKL 1875
            IE   T Y FSDGIGK+S+EFA KVA+KCGLK  P SAFQIRYGGYKGVVA DP + KKL
Sbjct: 532  IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 591

Query: 1874 YLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDS 1695
             LR SM K+ S+ TKLDVL+WSK+QPCFLNRQ+ISLLSTLG+ D IFEKKQ+EAV QLD+
Sbjct: 592  SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 651

Query: 1694 ILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTR 1515
            ILTDPL+A EALE+MSP E TNILKE+L+CGYKPD EPFLSMMLQTFRA+KLLELRT+TR
Sbjct: 652  ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 711

Query: 1514 IFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVV 1335
            IFIP GRSMMGCLDET TL YGQVFVQ+S  G+ QL G+S S+ +++      +V G VV
Sbjct: 712  IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES-SLFSSSRSRQRFIVQGLVV 770

Query: 1334 VAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQ 1155
            VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD 
Sbjct: 771  VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 830

Query: 1154 ELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLK 975
            ELIPP+Q  PMDY  + +M LDHDVQIE+VEEYF NY++NDSLG+IAN HT FAD+E  K
Sbjct: 831  ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHK 890

Query: 974  AESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFR 795
            A SE C++LA+ FSIAVDFPKTGVPAEIPPHL VKEYPDFMEK D+PTYES+ VIGKLFR
Sbjct: 891  ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFR 950

Query: 794  QVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGI 615
             VKDIAPHTS I+ FT EVA++ YD DMEVDGFED++DDA +HKG +DYKL NLMDYYGI
Sbjct: 951  AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 1010

Query: 614  KTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYA 435
            KTEAEIL GS+MK+SKSF  RRDAE+I +AVRAL+KEAR WF +K    SGS  +DD YA
Sbjct: 1011 KTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK----SGSDTEDDAYA 1066

Query: 434  KASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQFM 255
            KASAWYHVTYHP Y+GCY+  M+RDHFLSFPWCVYD+L+ IKK+ +       +LE QF 
Sbjct: 1067 KASAWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFR 1126

Query: 254  SSLRL 240
              LR+
Sbjct: 1127 QGLRM 1131


>ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1462 bits (3786), Expect = 0.0
 Identities = 733/1141 (64%), Positives = 886/1141 (77%), Gaps = 2/1141 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            M KTI +YGFPS V+A+ IK+FLE YTG+GT+ AL++  P++        A +QFTS + 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE++  L  +  ++++G +YLK    D DIIPKPR  + ++   TLHFGCQ+S++ F  L
Sbjct: 59   AEFIITLCKK--KVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVL 116

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +K  +VSV FG G RK  F LS+         +YKLELSYE+IW+IQL+ P+   ++FL+
Sbjct: 117  WKAINVSVKFGSGLRKFYFFLSHGSE------EYKLELSYENIWQIQLQHPRGQITKFLL 170

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIPYG 2937
            IQ+L AP++Y + +  L        YF    DDQWVR  DFT S  IGQS A+CL++PYG
Sbjct: 171  IQLLGAPQIYEKDVPVLS------YYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYG 224

Query: 2936 CKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLVQN 2757
             +LPNFRENF YY E+ G F ++ GS+ S +  LVP++GPP G  L + ILFK+N+LVQN
Sbjct: 225  SQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQN 284

Query: 2756 GCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSANP 2577
            GCLSG TLD +FFR+VDP   P++ I  ALEKL+HLK+CCYEPV+WL+EQY  Y +    
Sbjct: 285  GCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPV 343

Query: 2576 PRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDEDSE 2397
              S +ISL  GLVYVRRVQITP KVYF GPE+NVSNRVLR+Y + IDNF+R+SF+DE+ E
Sbjct: 344  AGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLE 403

Query: 2396 KIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWMFA 2217
            KI ST +S R  ++ E ++T +Y RILS L NG+VIGDKKF+FLAFS+SQLRDNSAWMFA
Sbjct: 404  KIHSTVISPR--MSKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFA 461

Query: 2216 SKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIESNG 2037
            S+  LTAA IR WMGDF +IRNVAKYAARLGQSF SS ETL V  +EIE I D+EI    
Sbjct: 462  SRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGR 521

Query: 2036 TIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKKLYLRKS 1860
            T Y FSDGIGKIS + AH+VA KCG K  TPSAFQIRYGGYKGVVAVDP + +KL LRKS
Sbjct: 522  TTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKS 581

Query: 1859 MCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILTDP 1680
            M K+ S NT LDVL+WSK+QP FLNRQ+I+LLSTLGV D++FEKKQ+ AVDQLD+IL DP
Sbjct: 582  MFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDP 641

Query: 1679 LRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFIPK 1500
            + A EALE+MSP E TN+LKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+TRIF+P 
Sbjct: 642  VAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 701

Query: 1499 GRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAKNP 1320
            GRSMMGCLDET TLEYG+VFVQ+S  G  Q  G S     +    D  ++ GK+VVAKNP
Sbjct: 702  GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNP 761

Query: 1319 CLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELIPP 1140
            CLHPGD+RVL AV+VP LHHMVDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD++LIPP
Sbjct: 762  CLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPP 821

Query: 1139 RQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAESEE 960
            +Q+ PMDY  +P  +LDHDV IEEVEEYF NY++NDSLG+IAN HT FADKE  KA  + 
Sbjct: 822  QQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDP 881

Query: 959  CIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVKDI 780
            C ELAKLFSIAVDFPKTGVPAEIP +LRVKEYPDFMEK D+PTYES+ VIGKLFR+VKDI
Sbjct: 882  CTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDI 941

Query: 779  APHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTEAE 600
            APH  +I+SFT +VA++ YD DMEV GFEDY+ DA+++K E+DYKL NLMDYYGIKTE+E
Sbjct: 942  APHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESE 1001

Query: 599  ILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKASAW 420
            IL GS+M++SKSF+ R+DAE+I LAV++L+KEARTWF+K  S      E DDVYAKASAW
Sbjct: 1002 ILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGS--ETDSEADDVYAKASAW 1059

Query: 419  YHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIK-KNNSMRRKHNWSLEDQFMSSLR 243
            YHVTYHP Y+GCY++ M RDHFLSFPWCVYDKLIH K K  S R  H  SLE +    LR
Sbjct: 1060 YHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLR 1119

Query: 242  L 240
            L
Sbjct: 1120 L 1120


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 733/1146 (63%), Positives = 885/1146 (77%), Gaps = 6/1146 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            M KT+ + GFPS  TA  ++ FLE++TG GTV AL++   +  G   R +A +QFT+++ 
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L N   RL++G+SYL   P DRDIIP+PR  +  ++  TLHFG Q S + F  +
Sbjct: 59   AEQIISLAN--PRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAV 116

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +   +VSV+FG G RKL F LS+         +YKL L +E+IW+I+L RP+    ++L+
Sbjct: 117  WSGNNVSVNFGLGMRKLHFFLSHNL------AEYKLNLLFENIWQIELHRPRGQTVKYLL 170

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRD--LQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQ+  AP++Y   + S  N   D  L YF    D+QWVRTTDFT S  IG SS++CL++P
Sbjct: 171  IQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELP 230

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLV 2763
               +LPNF ENF YY E++G F ++ G T SR+ DLVP+VGP  G  L Y+ILF+VN LV
Sbjct: 231  NHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLV 290

Query: 2762 QNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSA 2583
            QNGCL+G  LD  F+R+VDP   PV  I  ALEKL+HLK+CCYEP KW  EQY +Y  S 
Sbjct: 291  QNGCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSG 350

Query: 2582 NPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDED 2403
            NPPRS  +SL  GLVYV +VQITP KV+F GPE+NVSNRVLR Y + IDNF+R+SFVDE+
Sbjct: 351  NPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEE 410

Query: 2402 SEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWM 2223
             EKI STD+S R +  +E ++T +Y+RILSTL NG+VIGDKKFEFLAFS+SQLR+NS WM
Sbjct: 411  LEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWM 470

Query: 2222 FASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIES 2043
            FAS+  LTAA IR WMG F +IRNVA+YAARLGQSFGSSTETLSV S+EIE I D+E+  
Sbjct: 471  FASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSR 530

Query: 2042 NGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLR 1866
             GT Y FSDGIGKIS+EFA KVA KCG K  TPSAFQIRY GYKGVVAVDP + KKL LR
Sbjct: 531  GGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLR 590

Query: 1865 KSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILT 1686
            +SM K+ S+NTKLDVL+ SK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+EAVDQLD++LT
Sbjct: 591  RSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLT 650

Query: 1685 DPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFI 1506
            DPLRA EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLELRT+TRIFI
Sbjct: 651  DPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFI 710

Query: 1505 PKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAK 1326
            P GRSMMGCLDET TLE+GQVFV+ S      L   S  M +  G     L+ G VVVAK
Sbjct: 711  PNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSS-DMFSERGRGQCYLIKGSVVVAK 769

Query: 1325 NPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELI 1146
            NPCLHPGD+R+L+AVDVPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELI
Sbjct: 770  NPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELI 829

Query: 1145 PPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAES 966
            P +Q+ PMDY   P + LDHDV IEEVEEYF NY++NDSLGVIAN HTA ADKE LKA S
Sbjct: 830  PSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMS 889

Query: 965  EECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVK 786
            E C+ELA+ FSIAVDFPKTGVPAEIP +LR +EYPDFMEK D+P+YES+ VIGKLFR+VK
Sbjct: 890  EPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVK 949

Query: 785  DIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTE 606
            DIAP TS I+SFT +VA++ YD DMEVDGFEDY+DDA+++K  +DYKL NLM+YYGIKTE
Sbjct: 950  DIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTE 1009

Query: 605  AEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKAS 426
            AE+L GS MK+SKSF  +RDAE+I +AVR+LKKEAR+WF++K S      + DDV AKAS
Sbjct: 1010 AELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGS--GLDSQADDVDAKAS 1067

Query: 425  AWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNW---SLEDQFM 255
            AWYHVTYH  Y+GCY++ M+RDHFLSFPWCVYDKLI IK+ NS R + +    S+E QF 
Sbjct: 1068 AWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFS 1127

Query: 254  SSLRLS 237
              L LS
Sbjct: 1128 RGLHLS 1133


>ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus
            euphratica]
          Length = 1132

 Score = 1452 bits (3760), Expect = 0.0
 Identities = 731/1145 (63%), Positives = 885/1145 (77%), Gaps = 5/1145 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            M KT+ + GFPS  TA  ++ FLE+YTG GTV AL++   + +G   R +A +QFT+++ 
Sbjct: 1    MSKTVQVSGFPSSATAGAVQVFLESYTGGGTVEALKIRETRTRGA--RKYAIVQFTTTRA 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
             E +  L N  QRL++G SYL   P DRDIIP+PR S+  ++  TLHFG Q S + F  +
Sbjct: 59   TEQIISLAN--QRLWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAV 116

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +   +VSV+FG G RKL F LS+         +YKL L +E+IW+I+L RP+    ++L+
Sbjct: 117  WSGNNVSVNFGLGMRKLHFFLSHNL------AEYKLNLLFENIWQIELHRPRGQTVKYLL 170

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRD--LQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQ+  AP++Y   + S  N   D  L YF    D+QWVRTTDFT S SIG SS++CL++P
Sbjct: 171  IQLYGAPRIYEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELP 230

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLV 2763
               +LPNF ENF YY E++G F ++ GST SR+ DLVP+VGP  G  L Y+ILF+VN LV
Sbjct: 231  SHLQLPNFNENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLV 290

Query: 2762 QNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSA 2583
            QNGCL+G  LD  F+R+VDP   PV  I  ALEKL+HLK+CCYEP KW  EQY +Y  S 
Sbjct: 291  QNGCLAGSMLDDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSG 350

Query: 2582 NPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDED 2403
            NPPRS  +SL  GLVYV +VQITP KV+F GPE+N+SNRVLR Y + IDNF+R+SFVDE+
Sbjct: 351  NPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEE 410

Query: 2402 SEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWM 2223
             EKI STD+S R +  +E ++T +Y+RILSTL NG+VIGDKKFEFLAFS+SQLR+NS WM
Sbjct: 411  LEKIHSTDVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWM 470

Query: 2222 FASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIES 2043
            FAS+  LTAA IR WMG F +IRNVA+YAARLGQSF SSTETLSV  +EIE I D+E+  
Sbjct: 471  FASRLGLTAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSR 530

Query: 2042 NGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLR 1866
             GT Y FSDGIGKIS+EFA KVA KCG K  TPSAFQIRY GYKGVVAVDP + KKL LR
Sbjct: 531  GGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLR 590

Query: 1865 KSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILT 1686
             SM K+ S+NTKLDVL+ SK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+EAVDQLD+ILT
Sbjct: 591  MSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILT 650

Query: 1685 DPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFI 1506
            DPLRA EAL +MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLELRT+TRIFI
Sbjct: 651  DPLRAQEALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFI 710

Query: 1505 PKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAK 1326
            P GR MMGCLDET TLE+GQVFVQ S      L   S  + +  G     L+ G VVVAK
Sbjct: 711  PNGRLMMGCLDETRTLEHGQVFVQFSGSRFRNLYDSS-DVFSERGRGQCYLIEGSVVVAK 769

Query: 1325 NPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELI 1146
            NPCLHPGD+R+L+AVDVPALHHMVDCVVFPQKG RPHPN+CSGSDLDGD+YFVCWD ELI
Sbjct: 770  NPCLHPGDVRILKAVDVPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELI 829

Query: 1145 PPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAES 966
            P +Q+ PMDY   P + LDHDV IEEVEEYF NY++NDSLG+IAN HTAFADKE LKA S
Sbjct: 830  PSQQISPMDYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMS 889

Query: 965  EECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVK 786
            E C+ELA+ FSIAVDFPKTGVPAEIP +LRV+EYPDFMEK D+P+YES+ VIGKLFR+VK
Sbjct: 890  EPCLELARKFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVK 949

Query: 785  DIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTE 606
            DIAP TS I+SFT +VA++ YD DMEVDGFEDY+DDA+++K  +DYKL NLM+YYGIKTE
Sbjct: 950  DIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTE 1009

Query: 605  AEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKAS 426
            AE+L GS MK+SKSF  +RDAE+I +AVR+L+KEAR+WF++K S      + DDV AKAS
Sbjct: 1010 AELLSGSFMKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGS--GLDSQADDVDAKAS 1067

Query: 425  AWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHN--WSLEDQFMS 252
            AWYHVTYH  Y+GCY++ M+RDHFLSFPWC+YDKLI IKKN++  R+     S+E QF  
Sbjct: 1068 AWYHVTYHHNYWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRSRILHSVERQFSR 1127

Query: 251  SLRLS 237
             L LS
Sbjct: 1128 GLHLS 1132


>ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Populus
            euphratica]
          Length = 1132

 Score = 1451 bits (3757), Expect = 0.0
 Identities = 731/1145 (63%), Positives = 884/1145 (77%), Gaps = 5/1145 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            M KT+ + GFPS  TA  ++ FLE+YTG GTV AL++   + +G   R +A +QFT+++ 
Sbjct: 1    MSKTVQVSGFPSSATAGAVQVFLESYTGGGTVEALKIRETRTRGA--RKYAIVQFTTTRA 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
             E +  L N  QRL++G SYL   P DRDIIP+PR S+  ++  TLHFG Q S + F  +
Sbjct: 59   TEQIISLAN--QRLWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAV 116

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +   +VSV+FG G RKL F LS+         +YKL L +E+IW+I+L RP+    ++L+
Sbjct: 117  WSGNNVSVNFGLGMRKLHFFLSHNL------AEYKLNLLFENIWQIELHRPRGQTVKYLL 170

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRD--LQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQ+  AP++Y   + S  N   D  L YF    D+QWVRTTDFT S SIG SS++CL++P
Sbjct: 171  IQLYGAPRIYEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELP 230

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLV 2763
               +LPNF ENF YY E++G F ++ GST SR+ DLVP+VGP  G  L Y+ILF+VN LV
Sbjct: 231  SHLQLPNFNENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLV 290

Query: 2762 QNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSA 2583
            QNGCL+G  LD  F+R+VDP   PV  I  ALEKL+HLK+CCYEP KW  EQY +Y  S 
Sbjct: 291  QNGCLAGSMLDDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSG 350

Query: 2582 NPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDED 2403
            NPPRS  +SL  GLVYV +VQITP KV+F GPE+N+SNRVLR Y + IDNF+R+SFVDE+
Sbjct: 351  NPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEE 410

Query: 2402 SEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWM 2223
             EKI STD+S R +  +E ++T +Y+RILSTL NG+VIGDKKFEFLAFS+SQLR+NS WM
Sbjct: 411  LEKIHSTDVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWM 470

Query: 2222 FASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIES 2043
            FAS+  LTAA IR WMG F +IRNVA+YAARLGQSF SSTETLSV  +EIE I D+E+  
Sbjct: 471  FASRLGLTAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSR 530

Query: 2042 NGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLR 1866
             GT Y FSDGIGKIS+EFA KVA KCG K  TPSAFQIRY GYKGVVAVDP + KKL LR
Sbjct: 531  GGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLR 590

Query: 1865 KSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILT 1686
             SM K+ S+NTKLDVL+ SK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+EAVDQLD+ILT
Sbjct: 591  MSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILT 650

Query: 1685 DPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFI 1506
            DPLRA EAL +MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLELRT+TRIFI
Sbjct: 651  DPLRAQEALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFI 710

Query: 1505 PKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAK 1326
            P GR MMGCLDET TLE+GQVFVQ S      L   S  + +  G     L+ G VVVAK
Sbjct: 711  PNGRLMMGCLDETRTLEHGQVFVQFSGSRFRNLYDSS-DVFSERGRGQCYLIEGSVVVAK 769

Query: 1325 NPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELI 1146
            NPCLHPGD+R+L+AVDVPALHHMVDCVVFPQKG RPHP ECSGSDLDGD+YFVCWD ELI
Sbjct: 770  NPCLHPGDVRILKAVDVPALHHMVDCVVFPQKGPRPHPKECSGSDLDGDIYFVCWDPELI 829

Query: 1145 PPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAES 966
            P +Q+ PMDY   P + LDHDV IEEVEEYF NY++NDSLG+IAN HTAFADKE LKA S
Sbjct: 830  PSQQISPMDYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMS 889

Query: 965  EECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVK 786
            E C+ELA+ FSIAVDFPKTGVPAEIP +LRV+EYPDFMEK D+P+YES+ VIGKLFR+VK
Sbjct: 890  EPCLELARKFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVK 949

Query: 785  DIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTE 606
            DIAP TS I+SFT +VA++ YD DMEVDGFEDY+DDA+++K  +DYKL NLM+YYGIKTE
Sbjct: 950  DIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTE 1009

Query: 605  AEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKAS 426
            AE+L GS MK+SKSF  +RDAE+I +AVR+L+KEAR+WF++K S      + DDV AKAS
Sbjct: 1010 AELLSGSFMKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGS--GLDSQADDVDAKAS 1067

Query: 425  AWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHN--WSLEDQFMS 252
            AWYHVTYH  Y+GCY++ M+RDHFLSFPWC+YDKLI IKKN++  R+     S+E QF  
Sbjct: 1068 AWYHVTYHHNYWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRSRILHSVERQFSR 1127

Query: 251  SLRLS 237
             L LS
Sbjct: 1128 GLHLS 1132


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 1444 bits (3737), Expect = 0.0
 Identities = 738/1145 (64%), Positives = 884/1145 (77%), Gaps = 6/1145 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +  FPS V AE +K FLE YTGK TVYAL++   KN G   RA+A +QFT S +
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG---RAYAIVQFTKSTD 57

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L N  QRLY+G+SYLK    + DI+PKPR  +  ++  TLHFGCQVSN+ FY L
Sbjct: 58   AELIIRLTN--QRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            ++  DV+V+FG G RKL F+LS+        V+Y+L+L YE+IW+I+L RP+N  S++L+
Sbjct: 116  WEEVDVTVNFGMGMRKLQFLLSHH------CVEYRLDLFYENIWQIELHRPRNQTSKYLL 169

Query: 3116 IQMLAAPKVYVEPLSSLG----NPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLK 2949
            IQ+  AP++Y + + S G    NP   L YFM   DDQWVRTTDFT+S  IGQSS +CL+
Sbjct: 170  IQLFGAPRIYEKDVRSSGLVFENPL--LNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLE 227

Query: 2948 IPYGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNS 2769
            +PY  +LPNFRENF YY E +G F ++ GS+ SR+ +LVP+VGP  G  L Y+ILFK+N 
Sbjct: 228  LPYYLQLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINL 287

Query: 2768 LVQNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSL 2589
            LVQNGC+ G  LDANF+R+V+PC     +I  ALEKL++LK+CC+EP KWL EQY  Y  
Sbjct: 288  LVQNGCIPGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIA 347

Query: 2588 SANPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVD 2409
            S   P S  ISL DGLV VRRVQITP +VYF GPEINVSNRVLRH+HD IDNF+RI+FVD
Sbjct: 348  SKKNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVD 407

Query: 2408 EDSEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSA 2229
            E+ EKI STDL TR  + +      +Y RILSTL NG+VIGDK+FEFLAFS+SQLR+NSA
Sbjct: 408  EELEKIHSTDLLTRNRITE------IYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSA 461

Query: 2228 WMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEI 2049
            WMFAS+  LTAA IR WMG+F +IRNVAKYAARLGQSF SSTETLSV  +EIE I DVEI
Sbjct: 462  WMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEI 521

Query: 2048 ESNGTIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKKLY 1872
            + +G  Y FSDGIGKIS++FA KVA KC L   TPSAFQIR GG+KGVVAVDP + KKL 
Sbjct: 522  KRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLS 581

Query: 1871 LRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSI 1692
            LR SM K+ S+NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+E VDQL++I
Sbjct: 582  LRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAI 641

Query: 1691 LTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRI 1512
            LTDPL+A EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLELRT++RI
Sbjct: 642  LTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRI 701

Query: 1511 FIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVV 1332
            F+  GRSMMGCLDET TL+YGQVFVQVS     Q                  +V GKVVV
Sbjct: 702  FVANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQ----------------RFIVQGKVVV 745

Query: 1331 AKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQE 1152
            AKNPCLHPGD+RVL AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD E
Sbjct: 746  AKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPE 805

Query: 1151 LIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKA 972
            LIP +Q+ PMDY  +P   L+H+V IEEVEEYF NY++NDSLG+IAN HT FAD+E  KA
Sbjct: 806  LIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 865

Query: 971  ESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQ 792
             S EC  LAKLFSIAVDFPKTGVPAEIP  LRVKEYPDFMEK D+PTY+S  VIGKLFR+
Sbjct: 866  MSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFRE 925

Query: 791  VKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIK 612
            VKD+AP+   I+S T E  ++ YD DMEVDG+EDY+DDA++HK  +DYKL NLM+YYGIK
Sbjct: 926  VKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIK 985

Query: 611  TEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAK 432
            TEAEIL G +MK+S+SF  +RDAE+I +AVR+L+KEAR+WF++K   N    E DD+YAK
Sbjct: 986  TEAEILSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKG--NGLDSEADDLYAK 1043

Query: 431  ASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNW-SLEDQFM 255
            ASAWYHVTYHP Y+G Y++ M+R+HFLSFPWCVYDKLI IKK  + RR     SLE  F 
Sbjct: 1044 ASAWYHVTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFA 1103

Query: 254  SSLRL 240
              LRL
Sbjct: 1104 RGLRL 1108


>ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas] gi|802596568|ref|XP_012072322.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas] gi|802596570|ref|XP_012072324.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas]
          Length = 1127

 Score = 1439 bits (3725), Expect = 0.0
 Identities = 719/1146 (62%), Positives = 898/1146 (78%), Gaps = 8/1146 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +YGFPS+VT + +K FLE+++G+GTV+A+++   KN+G   R +A +QF ++++
Sbjct: 1    MGKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGR--RKYAIVQFQTARD 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L N+  RL +G SYLK  P D DI+PKPR  + ++   TLHFGCQ+S + F  L
Sbjct: 59   AELIISLTNK--RLRYGTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVL 116

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +   +VSV+FGFG RKL F LS+ +      + YKLELSYE++W+++L  P+  + ++L+
Sbjct: 117  WTGTNVSVNFGFGMRKLQFFLSHGQ------MGYKLELSYENVWQMELHCPRGRSVKYLL 170

Query: 3116 IQMLAAPKVYVEPLSS-------LGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAM 2958
            IQ+  AP+++ + +++       L N  +D      T D+QWVRT DFT    IG SS +
Sbjct: 171  IQLYGAPRIFEKEIATFNVFEIPLFNDLKD------TPDEQWVRTIDFTPFCLIGHSSGL 224

Query: 2957 CLKIPYGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFK 2778
            CL+ P    +P F+ENF YY E +G F ++ G+  SR+ DLVP+VGPP G  L ++ILF+
Sbjct: 225  CLEFPSSINVPKFQENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFR 284

Query: 2777 VNSLVQNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLE 2598
            VN LVQNGCL G  LD++F+ +VDP +  ++ I  AL+KLFHLK+CCY+P +WL EQY +
Sbjct: 285  VNLLVQNGCLPGSALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRK 344

Query: 2597 YSLSANPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRIS 2418
            Y  S   PRS SISL  GLVY+RRVQITP KVYF GPE+NVSNRV+RHY   I+NF+R+S
Sbjct: 345  YLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVS 404

Query: 2417 FVDEDSEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRD 2238
            FVDE+ EKI STDL  RA+  +  ++T +Y RILSTL NG+VIG+K+FEFLAFS+SQLR+
Sbjct: 405  FVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRE 464

Query: 2237 NSAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRD 2058
            NS WMFAS+  LTAA IR+WMG+FR+IRNVAKYAARLGQSFGSSTETLSV  NEIE + D
Sbjct: 465  NSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPD 524

Query: 2057 VEIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVK 1881
            VE+E   T Y FSDGIGKIS+EFA +VA KCG +   PSAFQIRYGGYKGVVAVDP + K
Sbjct: 525  VEVERGRTKYLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSK 584

Query: 1880 KLYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQL 1701
            KL LR+SMCK+ S+NTKLDVL +SK+QPCFLNRQ+I+LLSTLGV+D+IFEKKQ+EAVDQL
Sbjct: 585  KLSLRESMCKYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQL 644

Query: 1700 DSILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTR 1521
            D+ILT+ LRA EAL++MSP ETTNIL EMLLCGY+PD EPFLSMMLQ FRA+KLL+LRT+
Sbjct: 645  DAILTNSLRAQEALDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTK 704

Query: 1520 TRIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGK 1341
            +RIF+P GRSMMGCLDET  LEYGQVFVQ S   H Q+   S +M+   G  +  ++ G 
Sbjct: 705  SRIFVPNGRSMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSS-TMVGGIGSGNGFVIEGM 763

Query: 1340 VVVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCW 1161
            V+VAKNPCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 764  VIVAKNPCLHPGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCW 823

Query: 1160 DQELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKEL 981
            D +LIP +Q+ PMDY   P++ LDHDV I+EV EYF NY++NDSLG+I+N HT FAD+E 
Sbjct: 824  DPDLIPRQQLPPMDYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREP 883

Query: 980  LKAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKL 801
             KA S+ C+ELA  FSIAVDFPKTGVPAEI  HLRVKEYPDFMEK D+PTYES+ VIGKL
Sbjct: 884  EKAMSKPCLELASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKL 943

Query: 800  FRQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYY 621
            FR V+DIAPHTS IKSFTLEVA++ YD DMEVDGFEDY+DDA+++K  +DYKL N MDYY
Sbjct: 944  FRAVRDIAPHTSSIKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYY 1003

Query: 620  GIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDV 441
            GI+TEAEILGGS+MK+SK+F  +RDAE+I LAVR+L+KEAR+WF ++ S      E+DDV
Sbjct: 1004 GIRTEAEILGGSIMKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGS--GLDSEEDDV 1061

Query: 440  YAKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQ 261
            YAKASAW++VTYHP Y+G Y++ M+RDHFLSFPWCVYDKLI IK+    R +H  SLE Q
Sbjct: 1062 YAKASAWHYVTYHPSYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR--RCQHLSSLERQ 1119

Query: 260  FMSSLR 243
            F   LR
Sbjct: 1120 FGLRLR 1125


>ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
            curcas]
          Length = 1144

 Score = 1439 bits (3725), Expect = 0.0
 Identities = 719/1146 (62%), Positives = 898/1146 (78%), Gaps = 8/1146 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +YGFPS+VT + +K FLE+++G+GTV+A+++   KN+G   R +A +QF ++++
Sbjct: 18   MGKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGR--RKYAIVQFQTARD 75

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L N+  RL +G SYLK  P D DI+PKPR  + ++   TLHFGCQ+S + F  L
Sbjct: 76   AELIISLTNK--RLRYGTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVL 133

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +   +VSV+FGFG RKL F LS+ +      + YKLELSYE++W+++L  P+  + ++L+
Sbjct: 134  WTGTNVSVNFGFGMRKLQFFLSHGQ------MGYKLELSYENVWQMELHCPRGRSVKYLL 187

Query: 3116 IQMLAAPKVYVEPLSS-------LGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAM 2958
            IQ+  AP+++ + +++       L N  +D      T D+QWVRT DFT    IG SS +
Sbjct: 188  IQLYGAPRIFEKEIATFNVFEIPLFNDLKD------TPDEQWVRTIDFTPFCLIGHSSGL 241

Query: 2957 CLKIPYGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFK 2778
            CL+ P    +P F+ENF YY E +G F ++ G+  SR+ DLVP+VGPP G  L ++ILF+
Sbjct: 242  CLEFPSSINVPKFQENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFR 301

Query: 2777 VNSLVQNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLE 2598
            VN LVQNGCL G  LD++F+ +VDP +  ++ I  AL+KLFHLK+CCY+P +WL EQY +
Sbjct: 302  VNLLVQNGCLPGSALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRK 361

Query: 2597 YSLSANPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRIS 2418
            Y  S   PRS SISL  GLVY+RRVQITP KVYF GPE+NVSNRV+RHY   I+NF+R+S
Sbjct: 362  YLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVS 421

Query: 2417 FVDEDSEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRD 2238
            FVDE+ EKI STDL  RA+  +  ++T +Y RILSTL NG+VIG+K+FEFLAFS+SQLR+
Sbjct: 422  FVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRE 481

Query: 2237 NSAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRD 2058
            NS WMFAS+  LTAA IR+WMG+FR+IRNVAKYAARLGQSFGSSTETLSV  NEIE + D
Sbjct: 482  NSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPD 541

Query: 2057 VEIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVK 1881
            VE+E   T Y FSDGIGKIS+EFA +VA KCG +   PSAFQIRYGGYKGVVAVDP + K
Sbjct: 542  VEVERGRTKYLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSK 601

Query: 1880 KLYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQL 1701
            KL LR+SMCK+ S+NTKLDVL +SK+QPCFLNRQ+I+LLSTLGV+D+IFEKKQ+EAVDQL
Sbjct: 602  KLSLRESMCKYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQL 661

Query: 1700 DSILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTR 1521
            D+ILT+ LRA EAL++MSP ETTNIL EMLLCGY+PD EPFLSMMLQ FRA+KLL+LRT+
Sbjct: 662  DAILTNSLRAQEALDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTK 721

Query: 1520 TRIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGK 1341
            +RIF+P GRSMMGCLDET  LEYGQVFVQ S   H Q+   S +M+   G  +  ++ G 
Sbjct: 722  SRIFVPNGRSMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSS-TMVGGIGSGNGFVIEGM 780

Query: 1340 VVVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCW 1161
            V+VAKNPCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 781  VIVAKNPCLHPGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCW 840

Query: 1160 DQELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKEL 981
            D +LIP +Q+ PMDY   P++ LDHDV I+EV EYF NY++NDSLG+I+N HT FAD+E 
Sbjct: 841  DPDLIPRQQLPPMDYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREP 900

Query: 980  LKAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKL 801
             KA S+ C+ELA  FSIAVDFPKTGVPAEI  HLRVKEYPDFMEK D+PTYES+ VIGKL
Sbjct: 901  EKAMSKPCLELASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKL 960

Query: 800  FRQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYY 621
            FR V+DIAPHTS IKSFTLEVA++ YD DMEVDGFEDY+DDA+++K  +DYKL N MDYY
Sbjct: 961  FRAVRDIAPHTSSIKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYY 1020

Query: 620  GIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDV 441
            GI+TEAEILGGS+MK+SK+F  +RDAE+I LAVR+L+KEAR+WF ++ S      E+DDV
Sbjct: 1021 GIRTEAEILGGSIMKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGS--GLDSEEDDV 1078

Query: 440  YAKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQ 261
            YAKASAW++VTYHP Y+G Y++ M+RDHFLSFPWCVYDKLI IK+    R +H  SLE Q
Sbjct: 1079 YAKASAWHYVTYHPSYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR--RCQHLSSLERQ 1136

Query: 260  FMSSLR 243
            F   LR
Sbjct: 1137 FGLRLR 1142


>ref|XP_002281315.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
            gi|731369199|ref|XP_010650995.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1109

 Score = 1427 bits (3694), Expect = 0.0
 Identities = 723/1130 (63%), Positives = 877/1130 (77%), Gaps = 1/1130 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +YG PS V+A  IK+FLE YTG+GT+ AL++  PK+        A +QFTS + 
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE   L+++  ++L++G +YLK    D DIIPKPR  + ++   TLHFG Q+SN+ F  L
Sbjct: 59   AE---LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +K  +VSV FGFG RK  F LS+         +YKLELS E+IW+IQLR P+  N++FL+
Sbjct: 116  WKAINVSVKFGFGLRKFYFFLSHGSE------EYKLELSCENIWQIQLREPRGQNTKFLL 169

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIPYG 2937
            IQ+L AP++Y + +S+L        YF  T DDQWVR  DFT S SIGQSSA+CL++P+G
Sbjct: 170  IQLLDAPQIYEKDVSALS-------YFKETPDDQWVREIDFTPSCSIGQSSALCLELPHG 222

Query: 2936 CKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLVQN 2757
             +LPNF ENF  Y E+   F ++ G++ S +  LVP+VGPP G  L + ILFK+N+LVQN
Sbjct: 223  SQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQN 282

Query: 2756 GCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSANP 2577
            GCLSG TLD NFFR VDP    ++ I  ALEKL++L++CCYEPV+WL EQY  Y +S   
Sbjct: 283  GCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQV 341

Query: 2576 PRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDEDSE 2397
              S +ISL  GLVYVRRVQITP KVYF GPE+NVSNRVLR+Y + IDNF+R+SF+DE+SE
Sbjct: 342  AGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSE 401

Query: 2396 KIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWMFA 2217
            KI ST +S R  +++E ++T +Y RILS L NG+VIGDKKF+FLA S+SQLRDNSAWMFA
Sbjct: 402  KIHSTVISPR--MSNEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFA 459

Query: 2216 SKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIESNG 2037
            S+  LTAA IR  MGDF +IRNVAKYAARLGQSF SS ETL V  +EIE I D+E   +G
Sbjct: 460  SRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDG 519

Query: 2036 TIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLRKS 1860
            T Y FSDGIGKIS+E AH+VA KCG K  TPSAFQIRYGGYKGVVAVDP + +KL LRKS
Sbjct: 520  TTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKS 579

Query: 1859 MCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILTDP 1680
            M K+ S+NT LDVLSWSK++PCFLNRQ+I+LLSTLGV D++FEKKQ+EAVDQLD+IL DP
Sbjct: 580  MFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDP 639

Query: 1679 LRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFIPK 1500
            LRA EALE+MSP E TNILKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+TRIF+P 
Sbjct: 640  LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 699

Query: 1499 GRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAKNP 1320
            GRSMMGCLDET TLEYG+VFVQ+S  G  Q  G S     +    D  ++ GKVVVAKNP
Sbjct: 700  GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759

Query: 1319 CLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELIPP 1140
            CLHPGD+R+L AVDVPALHHMVDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD +LIPP
Sbjct: 760  CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819

Query: 1139 RQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAESEE 960
            RQ+ PMDY  +P  +LDHDV IEEVEEYF NY+ ND LG+IAN HT FADKE  KA    
Sbjct: 820  RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 879

Query: 959  CIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVKDI 780
            C ELAKLFSIA++FPKTGVPAEIP HL VKEYPDFMEK ++PTYES+ VIGKLFR+VKD+
Sbjct: 880  CKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 939

Query: 779  APHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTEAE 600
            APH   ++SFT +VA + YD DMEVDGFEDY+ DA+++K ++D+KL +LMD  GI+TE+E
Sbjct: 940  APHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESE 999

Query: 599  ILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKASAW 420
            IL GS+MK+SKSF+ R+DAE+I+LAVR+L+KEARTWF+K  S        DDVYA ASAW
Sbjct: 1000 ILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGA--DDVYAIASAW 1057

Query: 419  YHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSL 270
            YHVTYHP Y+GCY++ M  DHFLSFPWCVYDKLI IK++    R  + SL
Sbjct: 1058 YHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRSLHLSL 1107


>ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
            gi|587864166|gb|EXB53859.1| RNA-dependent RNA polymerase
            1 [Morus notabilis]
          Length = 1133

 Score = 1414 bits (3661), Expect = 0.0
 Identities = 718/1148 (62%), Positives = 887/1148 (77%), Gaps = 9/1148 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI + GFPS+V+AE +K+FLE +TG+GTVYA+++   KN G   R++A +QF + + 
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGS--RSYAIVQFMTVET 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L N   RL++G SYL     +RDI+PKPR ++++L+  TLHFGCQ+S + F  L
Sbjct: 59   AELIIRLAN--PRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFL 116

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            ++  +VSVDFG G R+L F L+Y        V+Y+L+L YE++W+I+L RP+   +++L+
Sbjct: 117  WRVGNVSVDFGLGLRRLNFYLTYGP------VEYRLQLLYENVWQIELHRPRGQTAKYLL 170

Query: 3116 IQMLAAPKVYVEPL----SSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLK 2949
            IQ+L AP+VY + +      L NP     YF  T DDQWVR TDFTES  IG SSA+ L+
Sbjct: 171  IQLLGAPRVYEKEVRISFDILENPL--FNYFKDTPDDQWVRATDFTESCCIGHSSALYLE 228

Query: 2948 IPYGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNS 2769
            +PYG  LP+ RENF YY E +  F ++ GS+ SR+ DLVP+VGPP G  L ++ +FK+N 
Sbjct: 229  LPYGVDLPDLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINM 288

Query: 2768 LVQNGCLSGQTLDANFFRMVDPCS-HPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYS 2592
            L+QNGCLSG TLD +F+R+VDP     V+ I  ALEKLF+LK+C YEP  WL EQY +Y 
Sbjct: 289  LLQNGCLSGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYL 348

Query: 2591 LSANPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFV 2412
             +  PP+  +I+L  GLVYVRRVQ+TP KVYF GPEINVSNRVLR Y D+ID F+R+SFV
Sbjct: 349  TAPRPPKPPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFV 408

Query: 2411 DEDSEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNS 2232
            DE+ EK+ STDLS R +  +E ++T +Y RILS L NG+ IGD+KFEFLAFS+SQLRDNS
Sbjct: 409  DEELEKLFSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNS 468

Query: 2231 AWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVE 2052
             WMFA+    +A +IR W+GDFR IRNVAKYAARLGQSFGSSTETL+V  +E E I D+E
Sbjct: 469  LWMFAAVDGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIE 528

Query: 2051 IESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKL 1875
            IE     Y FSDGIGKISS FA +VA KCGLK C PSAFQIRY GYKGVVAVDP +  KL
Sbjct: 529  IERGAVKYVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKL 588

Query: 1874 YLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDS 1695
             LRKSM K+ S+  KLDVL++SK Q C+LNRQ+I+LLSTLGV D +FEKKQ+EAV QL++
Sbjct: 589  SLRKSMWKYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNA 648

Query: 1694 ILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTR 1515
            IL DPLRA EAL++MS  ETTNILKE+L CGY+P+ EPFLSMMLQ FRA+KL ELRT+TR
Sbjct: 649  ILNDPLRAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTR 708

Query: 1514 IFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVV 1335
            I IP GR+MMGCLDE  TLEYG+VFVQ S + H      SF ML   G     +V+G+VV
Sbjct: 709  ISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSF-MLGGTGSGQNYIVVGRVV 767

Query: 1334 VAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQ 1155
            VAKNPCLHPGD+RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD 
Sbjct: 768  VAKNPCLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDD 827

Query: 1154 ELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLK 975
            ELIP +Q +PMDY  +P   LDHDV+IEEV+EYF NY++NDSLG+IAN HTAFADKE  K
Sbjct: 828  ELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSK 887

Query: 974  AESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFR 795
            A S  CIELA+LFSIAVDFPKTGVPA IP  L VKEYPDFMEKL++PTYES+ VIGKLFR
Sbjct: 888  AMSPSCIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFR 947

Query: 794  QVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGI 615
            +VKDIAP+   +  FT EVA + YD DME DGFEDY+DDA+++K  +DYKL NL+DYYGI
Sbjct: 948  EVKDIAPNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGI 1007

Query: 614  KTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKK-SSINSGSQEDDDVY 438
            K+EAEI+GGS+M++SKSF  RRDAESI++AVRAL+KEARTWF++K SS++S +   DDVY
Sbjct: 1008 KSEAEIIGGSIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAA---DDVY 1064

Query: 437  AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNN-SMRRKHNW-SLED 264
            AKASAWY+VTYH  Y+GCY++ M+RDH+LSFPWCVYDKL+ IK++  S+RR     SLE 
Sbjct: 1065 AKASAWYYVTYHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLER 1124

Query: 263  QFMSSLRL 240
             F   L L
Sbjct: 1125 AFDRRLHL 1132


>ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058682|ref|XP_011075688.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058684|ref|XP_011075689.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
          Length = 1115

 Score = 1414 bits (3660), Expect = 0.0
 Identities = 711/1139 (62%), Positives = 866/1139 (76%), Gaps = 1/1139 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +YGFP  + A+++K+FLE  TG+GT+ AL+V  P  KGP  RA+A +QFT S+ 
Sbjct: 1    MGKTIQVYGFPYLIAADVVKNFLEQQTGQGTIVALEVK-PSKKGP--RAYAKVQFTHSRY 57

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L +   RLY+G SYL+V+  D DI+  PR  +  ++  TL+FGCQ S + F  L
Sbjct: 58   AEMIQNLAST--RLYYGTSYLRVWESDSDIVHNPRTYVHEMEQVTLNFGCQTSREKFSVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +K   VSV FG G +K+ F+L +        V+YKL+LSYE+IW+I L  P    ++ L+
Sbjct: 116  WKVASVSVKFGTGMKKMHFLLCHNS------VEYKLQLSYENIWQIVLYHPHGQTAKLLL 169

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIPYG 2937
            IQ+  AP++Y +   S+        YF  T DDQW+RTTDFT S  IGQ+S +CL++PYG
Sbjct: 170  IQLFGAPRIYKKVSESI------YSYFSETQDDQWIRTTDFTPS-CIGQASGLCLELPYG 222

Query: 2936 CKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLVQN 2757
             +LPNF+++F YY++ +  F ++ G+  S + DLVP++ PP G +L Y ILFKV SLVQ 
Sbjct: 223  MRLPNFQDHFVYYSKSENPFHLERGAPFSHNLDLVPILHPPRGFELPYRILFKVCSLVQT 282

Query: 2756 GCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSANP 2577
            GCL G  LDA FF++V+P      ++  ALEKL++LK+CCY+P  WL EQY +Y  +   
Sbjct: 283  GCLPGPKLDARFFQLVNPQRINTKYVEHALEKLYYLKECCYDPTTWLMEQYEKYRTAKEQ 342

Query: 2576 PRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDEDSE 2397
            P S  ISL DGLVYV RVQ+TP KVYF GPE+NVSNRVLRHY D+IDNF+R+SFVDE+ +
Sbjct: 343  PTSPVISLGDGLVYVHRVQVTPTKVYFSGPEVNVSNRVLRHYSDYIDNFLRVSFVDEEWD 402

Query: 2396 KIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWMFA 2217
            K+ STDLS R    DE  +T LY+RIL TL  G+ IG+K FEFLAFS+SQLRDNS WMFA
Sbjct: 403  KMYSTDLSPRVASADENGKTKLYERILKTLREGIRIGNKNFEFLAFSSSQLRDNSLWMFA 462

Query: 2216 SKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIESNG 2037
                L A  IR WMGDFR IRNVAKYAARLGQSFGSSTETLSV  +EIERI D+E    G
Sbjct: 463  PTNNLNAHYIRQWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGQHEIERIPDIEAVRGG 522

Query: 2036 TIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLRKS 1860
            T Y FSDGIGKIS+EFA +VA +CG+K  TPSAFQIRYGGYKGVVAVDP +  KL LR S
Sbjct: 523  TKYIFSDGIGKISAEFARRVAVRCGVKNSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRSS 582

Query: 1859 MCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILTDP 1680
            M K+ S+NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+EAV QLD IL DP
Sbjct: 583  MLKYQSENTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHAFERKQREAVAQLDDILVDP 642

Query: 1679 LRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFIPK 1500
            LRA EAL++M+P E TNILKEML CGYKPD EPFLSMMLQTFRA+KLL+LR + RIF+P+
Sbjct: 643  LRAQEALDLMAPGENTNILKEMLKCGYKPDGEPFLSMMLQTFRASKLLDLRLKARIFVPQ 702

Query: 1499 GRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAKNP 1320
            GR MMGCLDET TLEYG+VFVQ S     Q   +S  M N        +V GKVVVAKNP
Sbjct: 703  GRQMMGCLDETGTLEYGEVFVQFSGALRRQFNEESI-MFNDYMSEYNYIVKGKVVVAKNP 761

Query: 1319 CLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELIPP 1140
            CLHPGD+RVL+AVDV ALHHMVDCVVFP+KG RPHPNECSGSDLDGD+YFVCWD +LIPP
Sbjct: 762  CLHPGDVRVLKAVDVEALHHMVDCVVFPKKGMRPHPNECSGSDLDGDIYFVCWDPDLIPP 821

Query: 1139 RQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAESEE 960
            RQV PMDYD +P   LDHDV IEEVEEYF NY++NDSLG+I+N HT FADKE   A SE 
Sbjct: 822  RQVSPMDYDPAPTTGLDHDVTIEEVEEYFTNYIVNDSLGIISNAHTVFADKEESMALSES 881

Query: 959  CIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVKDI 780
            C+ELA+LFSIAVDFPKTGVPAEIP HLRVKEYPDFM+K D+  YESKRVIGKL+R+VKDI
Sbjct: 882  CLELARLFSIAVDFPKTGVPAEIPSHLRVKEYPDFMDKPDKTAYESKRVIGKLYREVKDI 941

Query: 779  APHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTEAE 600
            APHT+  KSFT EVA++ YD DMEVDGF+DY+D+A+ +K E+DYKL NLM+YYGIKTEAE
Sbjct: 942  APHTTSSKSFTKEVARRSYDPDMEVDGFKDYIDEAFDYKTEYDYKLGNLMEYYGIKTEAE 1001

Query: 599  ILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKASAW 420
            IL G +MK SK+F+ R+DAE+I +AVR+L+ EAR+WF K S       E DD YAKASAW
Sbjct: 1002 ILSGGIMKTSKTFDRRKDAEAIGVAVRSLRNEARSWFKKGS-------ESDDPYAKASAW 1054

Query: 419  YHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQFMSSLR 243
            YHVTYHP ++G Y++ + RDH++SFPWCVYDKLI IK++NS R     SLE Q  + LR
Sbjct: 1055 YHVTYHPDFWGSYNEGLKRDHYISFPWCVYDKLIKIKEDNSRRAPGISSLEWQLGNRLR 1113


>emb|CDP05596.1| unnamed protein product [Coffea canephora]
          Length = 1112

 Score = 1414 bits (3659), Expect = 0.0
 Identities = 716/1142 (62%), Positives = 879/1142 (76%), Gaps = 3/1142 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI ++GFPS V AE +  FLE +TG+GTVYAL+  I ++KG N RA+A +QFT+ ++
Sbjct: 1    MGKTIQVFGFPSVVPAETVTKFLECFTGQGTVYALE--IKQSKGGN-RAYAKVQFTNDRS 57

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AEY+  L  +  RL +G+SYL+ +  D D++P+ R    N++   LHFGCQVS + F  L
Sbjct: 58   AEYIMTLAKK--RLNYGSSYLRAWEMDVDLVPRARSFEHNMEQIVLHFGCQVSKNRFSVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
                +VSV FG G RK+ FIL ++         YKLELSYE+IW+I L R ++L  +FL+
Sbjct: 116  RNVPNVSVRFGIGMRKMYFILRFRS------CDYKLELSYENIWQIVLHR-RSLAPKFLL 168

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIPYG 2937
            IQ+  AP+V+ +   S         YF  T DDQWVRTTDFT S  IGQSS +CL++P G
Sbjct: 169  IQLFGAPRVFKKLEEST------FSYFKETPDDQWVRTTDFTSS-CIGQSSGICLELPRG 221

Query: 2936 CKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLVQN 2757
             +LPN  + F ++ E    F ++ GS  S +  L P++ PP G  L Y ILFKV  LVQ 
Sbjct: 222  IQLPNLGDYFAWFKESDSQFFLETGSPYSYNLVLAPILQPPQGLYLPYGILFKVCCLVQT 281

Query: 2756 GCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSANP 2577
            GCL G +LDANFFR+VDP    + +I  ALE L+ LK+CCYEPV+WL EQY +Y      
Sbjct: 282  GCLPGPSLDANFFRLVDPQRIKIRYIEHALENLYMLKECCYEPVQWLKEQYDKYDKLRQL 341

Query: 2576 PRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDEDSE 2397
            P+S +++L DGLVYVRRVQ+TP KVYF GPE+NVSNRVLR++ + +DNF+R+SF+DE+  
Sbjct: 342  PKSPTLTLDDGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRNFSEDLDNFLRVSFIDEEWN 401

Query: 2396 KIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWMFA 2217
            K+ STDLS R   N E  +T +Y+RILSTL NG+VIGDKKFEFLAFS+SQLRDNS WMFA
Sbjct: 402  KMFSTDLSPRIAAN-ENGRTEIYERILSTLKNGMVIGDKKFEFLAFSSSQLRDNSVWMFA 460

Query: 2216 SKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIESN- 2040
            S+  LTAA IR WMGDF  IRNVAKYAARLGQSF SSTETL+V  +EIE I D+E+    
Sbjct: 461  SRPGLTAADIRTWMGDFSRIRNVAKYAARLGQSFSSSTETLNVGRHEIEMISDIEVRGGY 520

Query: 2039 -GTI-YTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVKKLYLR 1866
             GT  Y FSDGIGK+S++FA +VA KCGL  TPSAFQIRYGG+KGVVAVDP + KKL LR
Sbjct: 521  FGTSKYVFSDGIGKMSAQFARQVATKCGLSFTPSAFQIRYGGFKGVVAVDPTSSKKLSLR 580

Query: 1865 KSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILT 1686
            +SM K+ S NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D +FEKKQ+EAV QLD+ILT
Sbjct: 581  QSMMKYESDNTKLDVLAWSKYQPCFLNRQLITLLSTLGVKDVVFEKKQREAVAQLDTILT 640

Query: 1685 DPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFI 1506
            DPLRA EALE+M+P E TN+LKEML CGYKPD EPFLSMMLQTFRA+KLL+LRT+TRIFI
Sbjct: 641  DPLRAREALELMAPGENTNVLKEMLKCGYKPDSEPFLSMMLQTFRASKLLDLRTKTRIFI 700

Query: 1505 PKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAK 1326
            P GRSM+GCLDET TLEYGQVFVQ S  G  Q    S S          T++ G VVVAK
Sbjct: 701  PDGRSMIGCLDETRTLEYGQVFVQFSSAGCRQFYDDSISYYEHK-----TILKGTVVVAK 755

Query: 1325 NPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELI 1146
            NPCLHPGD+R+L+AVD+P LHHMVDCVVFPQKGKRPH NECSGSDLDGD+YFVCWD +LI
Sbjct: 756  NPCLHPGDIRILKAVDLPTLHHMVDCVVFPQKGKRPHTNECSGSDLDGDIYFVCWDPDLI 815

Query: 1145 PPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAES 966
            PPRQ +PMDY  +P M L+H+V IEEVEEYF NY++NDSLG+IAN HT FAD+ELLKA S
Sbjct: 816  PPRQDEPMDYTPAPTMQLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADRELLKARS 875

Query: 965  EECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVK 786
            + C+ELA+LFSIAVDFPKTGVPAEI  HLRVKEYPDFMEK D+ TY+S+ VIGKLFR+VK
Sbjct: 876  KPCLELARLFSIAVDFPKTGVPAEITSHLRVKEYPDFMEKSDKTTYDSQHVIGKLFREVK 935

Query: 785  DIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTE 606
            +IAPHTS I+SFT EVA+K YD DMEVDGFEDY+D+A+ +K E+DYKL NLMDYYGIKTE
Sbjct: 936  EIAPHTSSIRSFTREVARKSYDIDMEVDGFEDYVDEAFDYKSEYDYKLGNLMDYYGIKTE 995

Query: 605  AEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKAS 426
            AEIL G +MK+S+SF+ R+DAE++ +AVR+L+KEARTWF++    N G    DD +AKAS
Sbjct: 996  AEILSGGIMKMSRSFDRRKDAEAVGMAVRSLRKEARTWFNR----NGG--HSDDAFAKAS 1049

Query: 425  AWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQFMSSL 246
            AWY+VTYHP+Y+GCY++ ++R H++SFPWC+YD+LI IKK  + R +   SLE QF   L
Sbjct: 1050 AWYYVTYHPRYWGCYNEGLNRAHYISFPWCIYDRLIQIKKARTRRAQQPSSLEVQFNHRL 1109

Query: 245  RL 240
            RL
Sbjct: 1110 RL 1111


>ref|XP_012847562.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Erythranthe
            guttatus] gi|848895047|ref|XP_012847563.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Erythranthe
            guttatus] gi|604316686|gb|EYU28878.1| hypothetical
            protein MIMGU_mgv1a000505mg [Erythranthe guttata]
          Length = 1110

 Score = 1413 bits (3657), Expect = 0.0
 Identities = 708/1140 (62%), Positives = 860/1140 (75%), Gaps = 1/1140 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MG+TI ++GFP  V AEL+K FLENYTG+GTV AL+V   K      RA+A +QFT+ + 
Sbjct: 1    MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAK---VGRRAYARVQFTNIRC 57

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L     RLY+G SYLK +  D DI+  PR     ++  TL+FGCQ+S   F  L
Sbjct: 58   AETIIDLAKN--RLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +K   V+V FG G +K+ F L +        V+YK++LSYE+IW+I L      +S+ L+
Sbjct: 116  WKGESVTVKFGTGMKKMHFFLRHNS------VEYKMQLSYENIWQIVLYNSYGQSSKLLV 169

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIPYG 2937
            IQ+  AP++Y +   S+        YFM T DDQWVRTTDFT+S  IGQSS++CL++PYG
Sbjct: 170  IQLFGAPRIYKKLSGSV------YSYFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYG 222

Query: 2936 CKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLVQN 2757
             +LPNFR+NF YY E +  F ++ G   S +SDLVP+V PP   +L Y +LFKV SLVQ 
Sbjct: 223  MRLPNFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQT 282

Query: 2756 GCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSANP 2577
            GCL G  LD +FF +V+P  H + +I  ALEKL++LK+CCY P  WL EQY  Y  S   
Sbjct: 283  GCLPGPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEH 342

Query: 2576 PRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDEDSE 2397
            P+S +I L DGLVYV RVQ+TP +VYF GPE+NVSNRVLRHY D+IDNF+R+SFVDE+ +
Sbjct: 343  PKSPAICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWD 402

Query: 2396 KIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWMFA 2217
            K+ STDLS R    DE K+T LY+R++S L +GV IGD+KF+FLAFS+SQLRDNS WMFA
Sbjct: 403  KMYSTDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFA 462

Query: 2216 SKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIESNG 2037
                L A  IR+WMGDF  IRNVAKYAARLGQSFGSSTETLSV   EIE I+DV+   NG
Sbjct: 463  PTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDVK---NG 519

Query: 2036 TIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKKLYLRKS 1860
            T YTFSDGIGKIS +FA +VA KCG++  TPSAFQIRYGGYKGVVAVDP + KKL LR S
Sbjct: 520  TEYTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPS 579

Query: 1859 MCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILTDP 1680
            M K+ S NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D++FEK+Q+EAV QLD +L DP
Sbjct: 580  MLKYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDP 639

Query: 1679 LRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFIPK 1500
            +RA EAL++MSP E T+ILKEML CGY+PD EPFLSMMLQTFRA+KLL+LR + R+FIPK
Sbjct: 640  MRAQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPK 699

Query: 1499 GRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAKNP 1320
             R MMGCLDET  L+YGQVFV+ S      L   S+    AN   D   V GKVVVAKNP
Sbjct: 700  ARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDP--VRGKVVVAKNP 757

Query: 1319 CLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELIPP 1140
            CLHPGD+RVL AVDVP L HMVDCVVFP+ GKRPHPNECSGSDLDGD+YFVCWD +LIP 
Sbjct: 758  CLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPT 817

Query: 1139 RQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAESEE 960
            +QV+PMDY+ +P   LDHDV IEEVE+YF NY++NDSLG+IAN HT FADKE L A SE 
Sbjct: 818  KQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEP 877

Query: 959  CIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVKDI 780
            C+ELA+LFSIAVDF KTG+PAEIPPHLRVKEYPDFMEK D+  Y S RVIGKLFR+VKDI
Sbjct: 878  CLELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDI 937

Query: 779  APHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTEAE 600
            AP TS  +SFT EVA++ YD DMEVDGFED++D+A+ HK E+DYKL NLM+YYG+KTEAE
Sbjct: 938  APQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAE 997

Query: 599  ILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKASAW 420
            +L G +MK+SK+F+ R+DAE+I  AVR+L+ EAR+WF K         E DDVYAKASAW
Sbjct: 998  VLSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWFKK-------GTEADDVYAKASAW 1050

Query: 419  YHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQFMSSLRL 240
            Y+VTYHP YFGCY++ M RDH+LSFPWCVYDKL+ IKK+NS R     SL  QF   +R+
Sbjct: 1051 YYVTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNSRRASQMASLRRQFNDRVRI 1110


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max] gi|734360586|gb|KHN15461.1| RNA-dependent RNA
            polymerase 1 [Glycine soja] gi|947122157|gb|KRH70363.1|
            hypothetical protein GLYMA_02G086100 [Glycine max]
          Length = 1125

 Score = 1407 bits (3641), Expect = 0.0
 Identities = 722/1148 (62%), Positives = 887/1148 (77%), Gaps = 8/1148 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +YGFP+ V    +K F+E YTG+GTV+A+++     KG  PRAFA IQFT++ +
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLR--HGKGRVPRAFAIIQFTTANS 58

Query: 3476 AEYMSLLVNRPQR-LYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYT 3300
            A  M    N   R L +G SYLK    +RDI+P+PRV + +L    L FGCQ+S   F  
Sbjct: 59   ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118

Query: 3299 LFKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFL 3120
            L+K +DV V+FG G RK+ F+ S+       +V+YKLELSYE+IW+I+L RP+N  +++L
Sbjct: 119  LWKKQDVIVNFGSGMRKMHFLFSHN------NVQYKLELSYENIWKIELHRPRNETTRYL 172

Query: 3119 IIQMLAAPKVYVEPLSSLGNPGRD--LQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKI 2946
            +IQ+L AP+V+   + +  N   D    +F    D+QW+R  DFT    IGQSSA+CL++
Sbjct: 173  LIQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLEL 232

Query: 2945 PYGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSL 2766
            P G +LPNFRENF YY E +  +T+Q G   S++  LVP+V PP G ++ YDILFKVNSL
Sbjct: 233  PNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSL 292

Query: 2765 VQNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLS 2586
            VQ+ CL+G  LD +F+R+VDP   P   I  ALEK+++ K+ CYEP KWLT+QY  Y  S
Sbjct: 293  VQHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLES 352

Query: 2585 ANPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDE 2406
             N PRS +ISL  GLVYVRRVQITP KVYF GPE+NVSNRVLRH+ +HIDNF+R+SFVDE
Sbjct: 353  KNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDE 412

Query: 2405 DSEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAW 2226
            + +K+ STDLS+R+    + K+T +Y RILS L NG+V+GDKKFEFLAFS+SQLR+NS W
Sbjct: 413  ELDKLFSTDLSSRS----QNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLW 468

Query: 2225 MFA-SKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVE- 2052
            MFA ++   TAA IR WMG+F +IRNVAKYAARLGQSFGSSTETLSV+ +E+E I DV+ 
Sbjct: 469  MFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKK 528

Query: 2051 IESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVKKLY 1872
            +  +G  Y FSDGIGKIS EFA KVA KCG  CTPSAFQIRYGGYKGVVAVDPK+  KL 
Sbjct: 529  LTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLS 588

Query: 1871 LRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSI 1692
            LRKSM K+ S NTKLDVL+ SKFQPC+LNRQ+ISLLSTLG+ D +FEKKQ+E V+QL++I
Sbjct: 589  LRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTI 648

Query: 1691 LTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRI 1512
            LTD L+A E L++MS  E TN+LKEML+CGYKP++EPFLSMMLQTFRA+KLLELR ++RI
Sbjct: 649  LTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRI 708

Query: 1511 FIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVV 1332
            FIPKGR+MMGCLDET TLEYGQVFVQ S   +N+L   S    + + P +  +V GKVVV
Sbjct: 709  FIPKGRAMMGCLDETRTLEYGQVFVQFS---NNRLQNLSDDFFSYDLPKNY-MVKGKVVV 764

Query: 1331 AKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQE 1152
            AKNPCLHPGD+RVL+AVDVP L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD E
Sbjct: 765  AKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHE 824

Query: 1151 LIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKA 972
            LIP R + PMDY A   + LDHDV IEEVEEYFANY++NDSLG+IAN HT FADKE LKA
Sbjct: 825  LIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKA 884

Query: 971  ESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQ 792
             S++C++LA+LFS AVDFPKTGVPA IPP L VKEYPDFMEK D+PTY+S  VIGKLFR+
Sbjct: 885  MSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFRE 944

Query: 791  VKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIK 612
            VK+I+     I SFT  VA+  YD +MEVDGF DY+DDA++HK  +DYKL NLMDYYGIK
Sbjct: 945  VKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIK 1004

Query: 611  TEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSS--INSGSQEDDDVY 438
            TEAEILGG++MK+SKSFN RRDAE+I++AVR+L+KEAR WF++ SS  ++SGS    DVY
Sbjct: 1005 TEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGS---SDVY 1061

Query: 437  AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNN-SMRRKHNWSLEDQ 261
            AKASAWYHVTYHP Y+GCY++ M+RDH+LSF WCVY  L+ IKK   S+RR    SLE  
Sbjct: 1062 AKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRS---SLEYS 1118

Query: 260  FMSSLRLS 237
            F S LRLS
Sbjct: 1119 F-SGLRLS 1125


>ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas] gi|802596581|ref|XP_012072328.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas]
          Length = 1126

 Score = 1404 bits (3634), Expect = 0.0
 Identities = 702/1135 (61%), Positives = 878/1135 (77%), Gaps = 2/1135 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTIH+YGFP  VT + +K  LE+++G GTV+A+++   KN G   R +A +QF ++++
Sbjct: 1    MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQ--RKYAIVQFQTARD 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE   L+++  +R+ +G SYLK     +DI+P PR  + ++   TLHFGC++S + F  L
Sbjct: 59   AE---LIISLNKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +   +VSV+FGFG RKL F LS+++      + YKL+LSYE++W+I+L  P+  + ++L+
Sbjct: 116  WTGTNVSVNFGFGLRKLQFFLSHEQ------MDYKLDLSYENVWQIELHCPRGRSVKYLL 169

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRDL-QYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIPY 2940
            IQ+  AP+++ + ++S       L  YF  T D+QWVRT DFT    IG SS +CL+ P 
Sbjct: 170  IQLYGAPRIFEKEIASSNVFESPLFNYFKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPS 229

Query: 2939 GCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLVQ 2760
               +P F+ENF YY E +  F ++ G+  S + DLVP+VGPP G  L ++ILF+VN LVQ
Sbjct: 230  SINVPKFQENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFEILFRVNLLVQ 289

Query: 2759 NGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSAN 2580
            +GCL G  LD++F+++VDP    ++ I  ALEKLFHLK+CCYEP  WL EQY +Y  S  
Sbjct: 290  HGCLPGSALDSSFYKLVDPSRMNIDCIEHALEKLFHLKECCYEPSMWLNEQYRKYLTSKY 349

Query: 2579 PPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDEDS 2400
             PRS SISL  GL YVRR QITP K YF GPE+NVSNRV+R Y   I+NF+R+SFVDE+ 
Sbjct: 350  LPRSPSISLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNFLRVSFVDEEL 409

Query: 2399 EKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWMF 2220
             KI STDLS RA+  +  ++T +Y+RILSTL NG+VIG+K+FEFLAFS+SQLR+NS WMF
Sbjct: 410  GKIHSTDLSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMF 469

Query: 2219 ASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIESN 2040
            AS+  LTAA IR+WMG+FR+IRNVAKYAARLGQSFGSSTETLSV  N+IE + D+E E  
Sbjct: 470  ASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIEILPDIEAERG 529

Query: 2039 GTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLRK 1863
             T Y FSDGIGKIS+EFA +VA KCG +   PSAFQIRYGGYKGVVAVDP + KKL LRK
Sbjct: 530  RTKYLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRK 589

Query: 1862 SMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILTD 1683
            SMCK+ S+NTKLDVL +SK+QPCFLNRQ+I+LLSTLGV D+IFEKKQ+EAVDQLD+ILT+
Sbjct: 590  SMCKYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREAVDQLDAILTN 649

Query: 1682 PLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFIP 1503
             LRA EAL++MSP ETTNIL EMLLCGY+PD EPFL+MMLQ FRA+KLL++RT++RIF+P
Sbjct: 650  SLRAQEALDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLDVRTKSRIFVP 709

Query: 1502 KGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAKN 1323
             GRSMMGCLDET  LEYGQVFVQ S   H Q+   S +M    G  +  ++ G+V+VAKN
Sbjct: 710  NGRSMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSS-TMFGGIGSGNRFVIEGQVIVAKN 768

Query: 1322 PCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELIP 1143
            PCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD +LIP
Sbjct: 769  PCLHPGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIP 828

Query: 1142 PRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAESE 963
              Q+ PMDY   P++ LDHDV I+EV EYF NY++NDSLG+I+N HT FAD+E  KA S+
Sbjct: 829  RLQIPPMDYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPAKAMSK 888

Query: 962  ECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVKD 783
             C+ELA  FSIAVDFPKTGVPAEI  HLRVKEYPDFMEK D+PTYES+ VIGKLFR V+D
Sbjct: 889  PCLELASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRD 948

Query: 782  IAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTEA 603
            IAPHTS IKSFTLEVA++ YD DMEVDGF+DY+DDA+ +K  +DYKL N MDYYGI+TEA
Sbjct: 949  IAPHTSSIKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNHMDYYGIRTEA 1008

Query: 602  EILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKASA 423
            EILGGS+MK+SK+F  +RDAE+I LAV +L KEAR+WF++  S      E+DDVYAKASA
Sbjct: 1009 EILGGSIMKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGS--GLDSEEDDVYAKASA 1066

Query: 422  WYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQF 258
            WY+VTYHP Y+G Y++ M+RDHFLSFPWCVYDKLI IK+    R +   SLE QF
Sbjct: 1067 WYYVTYHPTYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR--RCQPLSSLERQF 1119


>ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
            curcas]
          Length = 1150

 Score = 1404 bits (3634), Expect = 0.0
 Identities = 702/1135 (61%), Positives = 878/1135 (77%), Gaps = 2/1135 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTIH+YGFP  VT + +K  LE+++G GTV+A+++   KN G   R +A +QF ++++
Sbjct: 25   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQ--RKYAIVQFQTARD 82

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE   L+++  +R+ +G SYLK     +DI+P PR  + ++   TLHFGC++S + F  L
Sbjct: 83   AE---LIISLNKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVL 139

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +   +VSV+FGFG RKL F LS+++      + YKL+LSYE++W+I+L  P+  + ++L+
Sbjct: 140  WTGTNVSVNFGFGLRKLQFFLSHEQ------MDYKLDLSYENVWQIELHCPRGRSVKYLL 193

Query: 3116 IQMLAAPKVYVEPLSSLGNPGRDL-QYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIPY 2940
            IQ+  AP+++ + ++S       L  YF  T D+QWVRT DFT    IG SS +CL+ P 
Sbjct: 194  IQLYGAPRIFEKEIASSNVFESPLFNYFKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPS 253

Query: 2939 GCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLVQ 2760
               +P F+ENF YY E +  F ++ G+  S + DLVP+VGPP G  L ++ILF+VN LVQ
Sbjct: 254  SINVPKFQENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFEILFRVNLLVQ 313

Query: 2759 NGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSAN 2580
            +GCL G  LD++F+++VDP    ++ I  ALEKLFHLK+CCYEP  WL EQY +Y  S  
Sbjct: 314  HGCLPGSALDSSFYKLVDPSRMNIDCIEHALEKLFHLKECCYEPSMWLNEQYRKYLTSKY 373

Query: 2579 PPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDEDS 2400
             PRS SISL  GL YVRR QITP K YF GPE+NVSNRV+R Y   I+NF+R+SFVDE+ 
Sbjct: 374  LPRSPSISLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNFLRVSFVDEEL 433

Query: 2399 EKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWMF 2220
             KI STDLS RA+  +  ++T +Y+RILSTL NG+VIG+K+FEFLAFS+SQLR+NS WMF
Sbjct: 434  GKIHSTDLSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMF 493

Query: 2219 ASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIESN 2040
            AS+  LTAA IR+WMG+FR+IRNVAKYAARLGQSFGSSTETLSV  N+IE + D+E E  
Sbjct: 494  ASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIEILPDIEAERG 553

Query: 2039 GTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLRK 1863
             T Y FSDGIGKIS+EFA +VA KCG +   PSAFQIRYGGYKGVVAVDP + KKL LRK
Sbjct: 554  RTKYLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRK 613

Query: 1862 SMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILTD 1683
            SMCK+ S+NTKLDVL +SK+QPCFLNRQ+I+LLSTLGV D+IFEKKQ+EAVDQLD+ILT+
Sbjct: 614  SMCKYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREAVDQLDAILTN 673

Query: 1682 PLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFIP 1503
             LRA EAL++MSP ETTNIL EMLLCGY+PD EPFL+MMLQ FRA+KLL++RT++RIF+P
Sbjct: 674  SLRAQEALDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLDVRTKSRIFVP 733

Query: 1502 KGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAKN 1323
             GRSMMGCLDET  LEYGQVFVQ S   H Q+   S +M    G  +  ++ G+V+VAKN
Sbjct: 734  NGRSMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSS-TMFGGIGSGNRFVIEGQVIVAKN 792

Query: 1322 PCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELIP 1143
            PCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD +LIP
Sbjct: 793  PCLHPGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIP 852

Query: 1142 PRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAESE 963
              Q+ PMDY   P++ LDHDV I+EV EYF NY++NDSLG+I+N HT FAD+E  KA S+
Sbjct: 853  RLQIPPMDYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPAKAMSK 912

Query: 962  ECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVKD 783
             C+ELA  FSIAVDFPKTGVPAEI  HLRVKEYPDFMEK D+PTYES+ VIGKLFR V+D
Sbjct: 913  PCLELASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRD 972

Query: 782  IAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTEA 603
            IAPHTS IKSFTLEVA++ YD DMEVDGF+DY+DDA+ +K  +DYKL N MDYYGI+TEA
Sbjct: 973  IAPHTSSIKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNHMDYYGIRTEA 1032

Query: 602  EILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKASA 423
            EILGGS+MK+SK+F  +RDAE+I LAV +L KEAR+WF++  S      E+DDVYAKASA
Sbjct: 1033 EILGGSIMKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGS--GLDSEEDDVYAKASA 1090

Query: 422  WYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQF 258
            WY+VTYHP Y+G Y++ M+RDHFLSFPWCVYDKLI IK+    R +   SLE QF
Sbjct: 1091 WYYVTYHPTYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR--RCQPLSSLERQF 1143


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1396 bits (3614), Expect = 0.0
 Identities = 716/1144 (62%), Positives = 868/1144 (75%), Gaps = 5/1144 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +YGF S V+A  +K FLE YTG+ TVYAL++   K  G   RAFA +QFT S +
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            A  +  L N  QRLY+G SYLK    + DI+PKPRV +  ++  T++FGCQVS + FY L
Sbjct: 58   AGLIIRLAN--QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +K  +V+++FG G RKL F+LSY         KYKLEL YE+IW+I+LR P +  S+ L+
Sbjct: 116  WKADNVTLNFGTGMRKLEFLLSYCSS------KYKLELFYENIWQIELRCPHSQTSKHLL 169

Query: 3116 IQMLAAPKVYVE--PLSSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQ+  AP++Y +  P S        L YF    DDQWVRTTDFT S  IGQSS + L++P
Sbjct: 170  IQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELP 229

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLV 2763
            +  +LPNFRENF YY E++G   ++ GS+ S +  LVP+V P     L ++ILFKVN LV
Sbjct: 230  HNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLV 289

Query: 2762 QNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSA 2583
            QNGC+ G  LD  F+R+VDPC     +I  ALEKL++L++CCYEP +WL E+Y  +S S 
Sbjct: 290  QNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSR 349

Query: 2582 NPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDED 2403
                S +ISL +GLVYVRRVQITP +VYF GPEINVSNRVLR +H+ IDNF+RISFVDE+
Sbjct: 350  KYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEE 409

Query: 2402 SEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWM 2223
             EKI ST++  R       ++T +Y RILSTL NG+VIG+K+FEFLAFS+SQLR+NSAWM
Sbjct: 410  LEKIHSTNVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWM 463

Query: 2222 FASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIES 2043
            FAS+  LTAA IR WMG+F +IRNVAKYAARLGQSF SSTETLSV  +EI  I D+EI  
Sbjct: 464  FASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMK 523

Query: 2042 NGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLR 1866
            +G  Y FSDGIGKIS+EFA KVA KC LK CTPSAFQIR GG+KGVVA+DP +  KL LR
Sbjct: 524  DGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLR 583

Query: 1865 KSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILT 1686
            KSM K+ S+NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D  FEKKQ+E VDQL+++LT
Sbjct: 584  KSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLT 643

Query: 1685 DPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFI 1506
            DPL A EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+TFRA+KLLELRT+ RIF+
Sbjct: 644  DPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFV 703

Query: 1505 PKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAK 1326
             KGRSMMGCLDET TL YGQVFVQ S                 +      +V GKV+VAK
Sbjct: 704  QKGRSMMGCLDETRTLNYGQVFVQFS----------------GSRSERRFIVQGKVIVAK 747

Query: 1325 NPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELI 1146
            NPCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFVCWD ELI
Sbjct: 748  NPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELI 807

Query: 1145 PPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAES 966
            P +Q+ PMDY  +    LDH+V IEE+EEYF NY++NDSLG+I+N HTAFAD+E  KA S
Sbjct: 808  PYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMS 867

Query: 965  EECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVK 786
              C+ELAKLFSIAVDFPKTGVPAEIP  LRVKEYPDFMEK D+P+Y+S  VIGKLFR+VK
Sbjct: 868  RPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVK 927

Query: 785  DIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTE 606
            ++AP+   IK  T E  ++ YD DMEV+GFEDY+DDA+FHK ++DYKL NLMDYYG+KTE
Sbjct: 928  NLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTE 987

Query: 605  AEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKAS 426
            AEILGG +MK+S+SF  +RDAE+IS+AVR+L+KEAR+WF++K S     +E DD YAKAS
Sbjct: 988  AEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGS--ELDEEIDDAYAKAS 1045

Query: 425  AWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRK--HNWSLEDQFMS 252
            AWY+VTYHP Y+G Y++ M+RDHFLSFPWCVYDKLI IKK  +  R+     SLE +F  
Sbjct: 1046 AWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQR 1105

Query: 251  SLRL 240
             L L
Sbjct: 1106 GLHL 1109


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|778697870|ref|XP_011654423.1| PREDICTED: RNA-dependent
            RNA polymerase 1-like isoform X1 [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus] gi|948561973|gb|ALM88233.1|
            RNA-dependent RNA polymerase 1a [Cucumis sativus]
          Length = 1130

 Score = 1394 bits (3608), Expect = 0.0
 Identities = 710/1128 (62%), Positives = 864/1128 (76%), Gaps = 4/1128 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTIHI GFPS+VTA+ +K+FLE +TG GTVYA++V  PK  G   R +A +QFTS+  
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGG--RLYAIVQFTSATQ 58

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L N  QRL++G+SYLK    + DI+PKPR  M+ L+   L FGCQVS + F  L
Sbjct: 59   AELIISLAN--QRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVL 116

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            ++     V FG G RK+ F L YK       V+Y+LELSYE IW+IQL  P++ + ++L+
Sbjct: 117  WEGNVDLVTFGIGMRKMNFHLKYKS------VEYRLELSYEIIWQIQLHCPRDQSMKYLL 170

Query: 3116 IQMLAAPKVY--VEPLSSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQ+  AP++Y  V P S        L +F    DDQWVRTTDFT S SIGQSS++CLK+P
Sbjct: 171  IQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLP 230

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTM-QPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSL 2766
             G +LP F++NF YY E +  F +    +  S   DL P+V     H L Y ILFK+N+L
Sbjct: 231  NGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRS-HVLPYKILFKINAL 289

Query: 2765 VQNGCLSGQTLDANFFRMVDPC-SHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSL 2589
            VQ GC+    LDA+F+R+V+   +  +  +  ALEKLFHLK+C Y+P  +LTEQY +YS 
Sbjct: 290  VQYGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYS- 348

Query: 2588 SANPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVD 2409
              +PP S  ISL DGLVYVRRVQITP KV+F GPE+NVSNRVLRH+  +IDNF+R+SFVD
Sbjct: 349  -RHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVD 407

Query: 2408 EDSEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSA 2229
            E+ +K+RSTDL  R +   E  +T +Y RILS L NG+VIGDK F+FLAFS+SQLRDNS 
Sbjct: 408  EEWDKMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSL 467

Query: 2228 WMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEI 2049
            WMFAS   + AA IR WMGDFR I+N AKYAARLGQSFGSSTE LSV SNE E I D+E+
Sbjct: 468  WMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEV 527

Query: 2048 ESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVKKLYL 1869
            +     Y FSDGIGKISS+FA +VA KCG +  PSAFQIRYGGYKGVVAVDP +  KL L
Sbjct: 528  QQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSL 587

Query: 1868 RKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSIL 1689
            RKSMCKF S NTKLDVL  SK+QPCFLNRQ+I+L+STLGV D IFEKKQ EAV+QLD+IL
Sbjct: 588  RKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAIL 647

Query: 1688 TDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIF 1509
            TDPL+A EALE+MSP E TNILKEML CGY+PD EP+LSMMLQTFRA+KLLELRT++RIF
Sbjct: 648  TDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIF 707

Query: 1508 IPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVA 1329
            IP GR+MMGCLDET TLEYGQVFVQ+S   H  L  +SF+  N  G     ++ G V VA
Sbjct: 708  IPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNL-SESFA-FNRIGREHHLVIEGNVTVA 765

Query: 1328 KNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQEL 1149
            KNPCLHPGD+RVL+AV++P L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL
Sbjct: 766  KNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTEL 825

Query: 1148 IPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAE 969
            IP RQ+ PMDY  +P   LD DV  E+++EYF NYM+NDSLG+IAN HTAFADKEL KA 
Sbjct: 826  IPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKAR 885

Query: 968  SEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQV 789
            S  C+ELAKLFS+AVDFPKTGVPA IP HL VKE+PDFMEK DRP+YES +VIGKLFR V
Sbjct: 886  SSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAV 945

Query: 788  KDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKT 609
            KDIAP  SHI+SFT +VA++ YD DMEV+GFEDY++DA++HK  +DYKL NL+DYYGIK+
Sbjct: 946  KDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKS 1005

Query: 608  EAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKA 429
            EAE+L GS+M++SKSF  RRDAE+I+LAVR+L+KEARTWF+ +   +S S   DD++AKA
Sbjct: 1006 EAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNS---DDLFAKA 1062

Query: 428  SAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRK 285
            SAWY+VTYH  Y+GCY++ M RDH+LSFPWCVYDKL+ IK+NN  RR+
Sbjct: 1063 SAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRE 1110


>ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [Gossypium raimondii]
            gi|763812161|gb|KJB79013.1| hypothetical protein
            B456_013G029000 [Gossypium raimondii]
          Length = 1110

 Score = 1391 bits (3601), Expect = 0.0
 Identities = 708/1144 (61%), Positives = 868/1144 (75%), Gaps = 5/1144 (0%)
 Frame = -1

Query: 3656 MGKTIHIYGFPSYVTAELIKDFLENYTGKGTVYALQVTIPKNKGPNPRAFADIQFTSSQN 3477
            MGKTI +YGF S V+A  +K FLE YTG+ TVYAL++   K  G   RA+A +QFT S  
Sbjct: 1    MGKTIQVYGFLSNVSAGEVKTFLEGYTGRETVYALKIRQHKKGG---RAYAIVQFTRSSA 57

Query: 3476 AEYMSLLVNRPQRLYFGNSYLKVFPRDRDIIPKPRVSMFNLKVPTLHFGCQVSNDCFYTL 3297
            AE +  L N  QRLY+G SYLK    + DI+PKPR  +  ++  T++FGCQVS + FY L
Sbjct: 58   AELIIRLAN--QRLYYGRSYLKAREMETDIVPKPRAFLHTMERVTVNFGCQVSVEKFYVL 115

Query: 3296 FKTRDVSVDFGFGFRKLCFILSYKEPLKIKHVKYKLELSYESIWEIQLRRPKNLNSQFLI 3117
            +K  +V+++FG G RKL F++SY         KYKLEL YE+IW+I+LR P +  S+ L+
Sbjct: 116  WKAENVTLNFGTGMRKLEFLVSYCRS------KYKLELFYENIWQIELRCPDSQTSKHLL 169

Query: 3116 IQMLAAPKVYVEPL--SSLGNPGRDLQYFMHTLDDQWVRTTDFTESFSIGQSSAMCLKIP 2943
            IQ+  AP++Y + +  S L      L YF    DDQWVRTTDFT S  IGQSS +CL++P
Sbjct: 170  IQLFGAPRIYEKEVRASELVFDDPLLNYFKDVPDDQWVRTTDFTRSNCIGQSSVLCLELP 229

Query: 2942 YGCKLPNFRENFHYYTEDKGWFTMQPGSTVSRSSDLVPVVGPPGGHQLRYDILFKVNSLV 2763
            +  +LPNFRENF YY E++    ++ GS+ S +  LVP+V P     L ++ILFKVN LV
Sbjct: 230  HNLRLPNFRENFAYYKENESRLVLESGSSYSCNLSLVPIVCPLRVIDLPFEILFKVNLLV 289

Query: 2762 QNGCLSGQTLDANFFRMVDPCSHPVNHIMCALEKLFHLKDCCYEPVKWLTEQYLEYSLSA 2583
            QNGC+ G  LD  F+R+VDPC     +I  ALEKL++L++CCYEP +WL E+Y  +S S 
Sbjct: 290  QNGCIPGPALDDTFYRLVDPCRMDKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSR 349

Query: 2582 NPPRSTSISLSDGLVYVRRVQITPLKVYFMGPEINVSNRVLRHYHDHIDNFIRISFVDED 2403
                S +ISL +GLVYVRRVQITP +VYF GPEINVSNRVLR +H+ IDNF+RISFVDE+
Sbjct: 350  KYQGSPAISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEE 409

Query: 2402 SEKIRSTDLSTRATVNDEKKQTLLYDRILSTLHNGVVIGDKKFEFLAFSASQLRDNSAWM 2223
             EKI S ++  R       ++T +Y+RILSTL NGV+IGDK+FEFLAFS+SQLR+NSAWM
Sbjct: 410  LEKIHSINVQARG------RRTSIYERILSTLRNGVLIGDKRFEFLAFSSSQLRENSAWM 463

Query: 2222 FASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIES 2043
            FAS+  LTAA IR WMG+F +IRNVAKYAARLGQSF SSTETLSV  +EI  I D+EI  
Sbjct: 464  FASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMK 523

Query: 2042 NGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKKLYLR 1866
            +G  Y FSDGIGKIS++FA KVA KC LK CTPSAFQIR GG+KGVVA+DP +  KL LR
Sbjct: 524  DGIKYVFSDGIGKISAKFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLR 583

Query: 1865 KSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSILT 1686
            KSM K+ S+NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D  FEKKQ+E ++QL+++LT
Sbjct: 584  KSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVIEQLNALLT 643

Query: 1685 DPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIFI 1506
            DPL A EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+ FRA+KLLELRT+ RIF+
Sbjct: 644  DPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLEAFRASKLLELRTKARIFV 703

Query: 1505 PKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVAK 1326
             KGRSMMGCLDET TL YGQVFVQ S     Q C                +V GKV+VAK
Sbjct: 704  QKGRSMMGCLDETRTLNYGQVFVQFSGSRSEQRC----------------IVQGKVIVAK 747

Query: 1325 NPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQELI 1146
            NPCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELI
Sbjct: 748  NPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDPELI 807

Query: 1145 PPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAES 966
            P +Q+ PMDY  +P  +LDH+V IEE+EEYF NY++NDSLG+I+N HTAFAD+E  KA  
Sbjct: 808  PYKQMDPMDYSPAPTTILDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMC 867

Query: 965  EECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQVK 786
              C+ELAKLFSIAVDFPKTGVPAEIP  LRVKEYPDFMEK D+P+Y+S  VIGKLFR+VK
Sbjct: 868  HPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVK 927

Query: 785  DIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKTE 606
            ++AP+   IK  T E  ++ YD DMEV+GFEDY+DDA+FHK ++DYKL NLMDYYG+KTE
Sbjct: 928  NLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTE 987

Query: 605  AEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKAS 426
            AEIL G ++K+S+SF  +RDAE+IS+AVR+L+KEAR+WF+++ S     +E DD YAKAS
Sbjct: 988  AEILSGGILKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEERS--ELDEEIDDAYAKAS 1045

Query: 425  AWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRK--HNWSLEDQFMS 252
            AWY+VTYHP Y+G Y++ M+RDHFLSFPWCVYDKLI IKK  +  R+     SLE +F  
Sbjct: 1046 AWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQR 1105

Query: 251  SLRL 240
             L L
Sbjct: 1106 RLHL 1109