BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00006366
         (1298 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   152   1e-44
ref|XP_010273707.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   152   1e-44
ref|XP_006857036.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   142   6e-41
gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium r...   139   1e-40
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   139   1e-40
emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA p...   148   3e-40
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...   141   3e-40
ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isof...   141   3e-40
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...   141   3e-40
ref|XP_010551348.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   144   5e-40
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   146   5e-40
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              146   5e-40
ref|XP_010099287.1| DNA-directed RNA polymerase 2B [Morus notabi...   152   7e-40
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...   144   7e-40
ref|XP_012080481.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   142   9e-40
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat...   141   1e-39
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   140   2e-39
ref|XP_013604173.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   138   3e-39
emb|CDX76837.1| BnaC08g34230D [Brassica napus]                        138   3e-39
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   142   4e-39

>ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
           [Nelumbo nucifera]
          Length = 956

 Score =  152 bits (384), Expect(2) = 1e-44
 Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARK+KDEEGFYYPHNLDF     P +H    L  +  ++   +L+      L KAGLRW
Sbjct: 518 VARKIKDEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGKAGLRW 574

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANLYAGGVDKL Y++R+ FV+NHLDDI DSA +PIDG RWWL+AEDPFQ LAAC+
Sbjct: 575 LKIHLANLYAGGVDKLSYDDRLDFVENHLDDIFDSADKPIDGNRWWLNAEDPFQCLAACI 634

Query: 30  KLPDSLRSSS 1
            L ++L+SSS
Sbjct: 635 NLSEALKSSS 644



 Score = 57.0 bits (136), Expect(2) = 1e-44
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = -1

Query: 557 GSKSGIVHSIDIHPSRKHVCVLLIPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           G+ +G+V   DI           IPE+P S D IE+QKWKW++ K KK NRERHAQR
Sbjct: 463 GNMAGLVDREDIP----------IPEKPDSEDLIEMQKWKWNMRKTKKINRERHAQR 509


>ref|XP_010273707.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X2
           [Nelumbo nucifera]
          Length = 845

 Score =  152 bits (384), Expect(2) = 1e-44
 Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARK+KDEEGFYYPHNLDF     P +H    L  +  ++   +L+      L KAGLRW
Sbjct: 518 VARKIKDEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGKAGLRW 574

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANLYAGGVDKL Y++R+ FV+NHLDDI DSA +PIDG RWWL+AEDPFQ LAAC+
Sbjct: 575 LKIHLANLYAGGVDKLSYDDRLDFVENHLDDIFDSADKPIDGNRWWLNAEDPFQCLAACI 634

Query: 30  KLPDSLRSSS 1
            L ++L+SSS
Sbjct: 635 NLSEALKSSS 644



 Score = 57.0 bits (136), Expect(2) = 1e-44
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = -1

Query: 557 GSKSGIVHSIDIHPSRKHVCVLLIPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           G+ +G+V   DI           IPE+P S D IE+QKWKW++ K KK NRERHAQR
Sbjct: 463 GNMAGLVDREDIP----------IPEKPDSEDLIEMQKWKWNMRKTKKINRERHAQR 509


>ref|XP_006857036.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Amborella
           trichopoda] gi|548861119|gb|ERN18503.1| hypothetical
           protein AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score =  142 bits (358), Expect(2) = 6e-41
 Identities = 76/131 (58%), Positives = 93/131 (70%), Gaps = 4/131 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKM++EEGFYYPHNLDF     P      H+   L +  +E       A+     K+G
Sbjct: 549 VARKMREEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEF------AEGRPLGKSG 602

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           LRW KIHLANLYA GVDKL Y+ R+ FV+NHLDDI DSA+RP++GKRWWL+AEDPFQ LA
Sbjct: 603 LRWSKIHLANLYACGVDKLSYDGRLAFVENHLDDIFDSAERPLEGKRWWLNAEDPFQCLA 662

Query: 39  ACMKLPDSLRS 7
           ACM L ++L+S
Sbjct: 663 ACMNLFEALKS 673



 Score = 54.7 bits (130), Expect(2) = 6e-41
 Identities = 22/36 (61%), Positives = 30/36 (83%)
 Frame = -1

Query: 494 LLIPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +L+PE+P + D +EI+KW+WSV KAKK N ERH+QR
Sbjct: 505 VLLPEKPDTEDEMEIRKWRWSVKKAKKVNSERHSQR 540


>gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score =  139 bits (350), Expect(2) = 1e-40
 Identities = 73/130 (56%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKM++EEGFYYPHNLDF     P +H    L  +  ++   +L+      L ++GL W
Sbjct: 534 VARKMENEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGRSGLHW 590

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANLY+GGV+KL ++ R+ FVDNHLD+I DSA+ PI+G RWWL+AEDPFQ LAACM
Sbjct: 591 LKIHLANLYSGGVEKLSHDGRLAFVDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACM 650

Query: 30  KLPDSLRSSS 1
            L ++L+S+S
Sbjct: 651 NLSEALKSTS 660



 Score = 57.0 bits (136), Expect(2) = 1e-40
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P+S D+ EIQ+WKWSV KA K NRERH+QR
Sbjct: 492 IPEKPYSEDSTEIQEWKWSVRKANKVNRERHSQR 525


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
           raimondii] gi|763786877|gb|KJB53873.1| hypothetical
           protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score =  139 bits (350), Expect(2) = 1e-40
 Identities = 73/130 (56%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKM++EEGFYYPHNLDF     P +H    L  +  ++   +L+      L ++GL W
Sbjct: 534 VARKMENEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGRSGLHW 590

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANLY+GGV+KL ++ R+ FVDNHLD+I DSA+ PI+G RWWL+AEDPFQ LAACM
Sbjct: 591 LKIHLANLYSGGVEKLSHDGRLAFVDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACM 650

Query: 30  KLPDSLRSSS 1
            L ++L+S+S
Sbjct: 651 NLSEALKSTS 660



 Score = 57.0 bits (136), Expect(2) = 1e-40
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P+S D+ EIQ+WKWSV KA K NRERH+QR
Sbjct: 492 IPEKPYSEDSTEIQEWKWSVRKANKVNRERHSQR 525


>emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
           [Chenopodium album]
          Length = 988

 Score =  148 bits (373), Expect(2) = 3e-40
 Identities = 78/133 (58%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDEEGFYYPHNLDF     P      H+   L +  +E       A+     K+G
Sbjct: 550 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEF------AEGRPLGKSG 603

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           L WLK+H+ANLYAGGVDKL YE RV F +N LDD+ DSA RP++G+RWWL+AEDPFQ LA
Sbjct: 604 LNWLKVHVANLYAGGVDKLSYEGRVAFTENRLDDVFDSADRPLEGRRWWLTAEDPFQCLA 663

Query: 39  ACMKLPDSLRSSS 1
           AC+ L D+LRSSS
Sbjct: 664 ACINLTDALRSSS 676



 Score = 46.6 bits (109), Expect(2) = 3e-40
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +P EP + DA EI+KWKW V   KK N ERH+QR
Sbjct: 508 LPGEPDTDDAEEIKKWKWKVKHVKKDNAERHSQR 541


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
           gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
           superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  141 bits (355), Expect(2) = 3e-40
 Identities = 75/130 (57%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKM++EEGFYYPHNLDF     P +H    L  +  ++   +L+      L ++GL W
Sbjct: 540 VARKMENEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGRSGLHW 596

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ PI+G RWWL+AEDPFQ LAAC+
Sbjct: 597 LKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACI 656

Query: 30  KLPDSLRSSS 1
            L +SL+SSS
Sbjct: 657 NLSESLKSSS 666



 Score = 53.5 bits (127), Expect(2) = 3e-40
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P S D+ E Q+WKWSV KA K NRERH+QR
Sbjct: 498 IPEKPSSEDSTESQEWKWSVRKANKINRERHSQR 531


>ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
           gi|508784242|gb|EOY31498.1| DNA/RNA polymerases
           superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  141 bits (355), Expect(2) = 3e-40
 Identities = 75/130 (57%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKM++EEGFYYPHNLDF     P +H    L  +  ++   +L+      L ++GL W
Sbjct: 540 VARKMENEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGRSGLHW 596

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ PI+G RWWL+AEDPFQ LAAC+
Sbjct: 597 LKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACI 656

Query: 30  KLPDSLRSSS 1
            L +SL+SSS
Sbjct: 657 NLSESLKSSS 666



 Score = 53.5 bits (127), Expect(2) = 3e-40
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P S D+ E Q+WKWSV KA K NRERH+QR
Sbjct: 498 IPEKPSSEDSTESQEWKWSVRKANKINRERHSQR 531


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
           gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
           superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  141 bits (355), Expect(2) = 3e-40
 Identities = 75/130 (57%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKM++EEGFYYPHNLDF     P +H    L  +  ++   +L+      L ++GL W
Sbjct: 418 VARKMENEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGRSGLHW 474

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ PI+G RWWL+AEDPFQ LAAC+
Sbjct: 475 LKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACI 534

Query: 30  KLPDSLRSSS 1
            L +SL+SSS
Sbjct: 535 NLSESLKSSS 544



 Score = 53.5 bits (127), Expect(2) = 3e-40
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P S D+ E Q+WKWSV KA K NRERH+QR
Sbjct: 376 IPEKPSSEDSTESQEWKWSVRKANKINRERHSQR 409


>ref|XP_010551348.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Tarenaya
           hassleriana]
          Length = 992

 Score =  144 bits (364), Expect(2) = 5e-40
 Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDEEGFYYPHNLDF     P      H+   L +  +E       A+     ++G
Sbjct: 554 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGVLEF------AEGKPLGESG 607

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           L+WLKIHLANLYAGGVDKL YE R+ F +NHL+DI DSA RP++G+RWWL AEDPFQ LA
Sbjct: 608 LQWLKIHLANLYAGGVDKLSYEGRIAFTENHLEDIFDSADRPLEGRRWWLDAEDPFQCLA 667

Query: 39  ACMKLPDSLRSSS 1
           AC+ L ++LR+ S
Sbjct: 668 ACINLTEALRNPS 680



 Score = 49.3 bits (116), Expect(2) = 5e-40
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +PEEP + D +EI+KWKW +  AKK N ERH+QR
Sbjct: 512 LPEEPDTEDQMEIRKWKWKMKDAKKENSERHSQR 545


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  146 bits (368), Expect(2) = 5e-40
 Identities = 78/130 (60%), Positives = 95/130 (73%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKMKDEEGFYYPHNLDF     P +H    L  +  ++   +L+      L K+GLRW
Sbjct: 541 VARKMKDEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGKSGLRW 597

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKI LANLYAGGV+KL Y+ R+ FVDNHLDD+ DSA  P++G RWWL+AEDPFQ LAAC+
Sbjct: 598 LKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACI 657

Query: 30  KLPDSLRSSS 1
            L ++LRSSS
Sbjct: 658 NLSEALRSSS 667



 Score = 47.8 bits (112), Expect(2) = 5e-40
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +PE+P + D  EIQ WKW+  KAKK N+ERH+ R
Sbjct: 499 LPEKPSTEDLTEIQNWKWNARKAKKINQERHSLR 532


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  146 bits (368), Expect(2) = 5e-40
 Identities = 78/130 (60%), Positives = 95/130 (73%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKMKDEEGFYYPHNLDF     P +H    L  +  ++   +L+      L K+GLRW
Sbjct: 370 VARKMKDEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGKSGLRW 426

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKI LANLYAGGV+KL Y+ R+ FVDNHLDD+ DSA  P++G RWWL+AEDPFQ LAAC+
Sbjct: 427 LKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACI 486

Query: 30  KLPDSLRSSS 1
            L ++LRSSS
Sbjct: 487 NLSEALRSSS 496



 Score = 47.8 bits (112), Expect(2) = 5e-40
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +PE+P + D  EIQ WKW+  KAKK N+ERH+ R
Sbjct: 328 LPEKPSTEDLTEIQNWKWNARKAKKINQERHSLR 361


>ref|XP_010099287.1| DNA-directed RNA polymerase 2B [Morus notabilis]
           gi|587888947|gb|EXB77633.1| DNA-directed RNA polymerase
           2B [Morus notabilis]
          Length = 1093

 Score =  152 bits (383), Expect(2) = 7e-40
 Identities = 81/133 (60%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDEEGFYYPHN+DF     P      H+   L +  +E       A+     K+G
Sbjct: 575 VARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGILEF------AEGRPLGKSG 628

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           LRWLKIHLANLYAGGVDKL +E R+ FV+NHLD+I DSA RPI+GKRWWL+AEDPFQ LA
Sbjct: 629 LRWLKIHLANLYAGGVDKLSHEGRIAFVENHLDEIFDSADRPIEGKRWWLNAEDPFQCLA 688

Query: 39  ACMKLPDSLRSSS 1
            C+ L D+LRSSS
Sbjct: 689 VCINLSDALRSSS 701



 Score = 41.6 bits (96), Expect(2) = 7e-40
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +PE+P + D   ++KWKW V   +K  RERH+QR
Sbjct: 533 LPEKPDTEDEALLKKWKWEVRSVRKETRERHSQR 566


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
           gi|462398756|gb|EMJ04424.1| hypothetical protein
           PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  144 bits (362), Expect(2) = 7e-40
 Identities = 77/130 (59%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VARKMKDEEGFYYPHNLDF     P +H    L  +  ++   +L+      L K+GLRW
Sbjct: 538 VARKMKDEEGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGKSGLRW 594

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANLYAGGV+KL YE R+ FVDNH+DDI DSA  P++G RWWL+AEDP Q LAAC+
Sbjct: 595 LKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACI 654

Query: 30  KLPDSLRSSS 1
            L ++L S S
Sbjct: 655 NLSEALNSPS 664



 Score = 49.7 bits (117), Expect(2) = 7e-40
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +P++  S D  EIQ+WKWSV KAKK N+ERH+QR
Sbjct: 496 VPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQR 529


>ref|XP_012080481.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha
           curcas] gi|643721154|gb|KDP31418.1| hypothetical protein
           JCGZ_11794 [Jatropha curcas]
          Length = 990

 Score =  142 bits (358), Expect(2) = 9e-40
 Identities = 76/133 (57%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDE+GFYYPHNLDF     P      H+   L +  +E       A+     K+G
Sbjct: 552 VARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEF------AEGRPLGKSG 605

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           L WLKIHLAN+YAGGVDKL  E R+ F +NHLDDI DSA RP++G+RWWL AEDPFQ LA
Sbjct: 606 LCWLKIHLANVYAGGVDKLSNEGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 665

Query: 39  ACMKLPDSLRSSS 1
            C+ L ++LRSSS
Sbjct: 666 TCISLSEALRSSS 678



 Score = 50.8 bits (120), Expect(2) = 9e-40
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +PEEP +VD  EI+KWKW V   KK N ERH+QR
Sbjct: 510 LPEEPETVDEAEIRKWKWKVRSVKKENSERHSQR 543


>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
           gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 990

 Score =  141 bits (356), Expect(2) = 1e-39
 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDEEGFYYPHNLDF     P      H+   L +  +E       A+     K+G
Sbjct: 552 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEF------AEGRPLGKSG 605

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           L WLKIHLANL+AGGV+KL ++ R+ FV+NHLDDI+DSA+ PI GKRWWL AEDPFQ LA
Sbjct: 606 LHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLA 665

Query: 39  ACMKLPDSLRSSS 1
           AC+ L  +LRS S
Sbjct: 666 ACVILTQALRSPS 678



 Score = 51.2 bits (121), Expect(2) = 1e-39
 Identities = 23/34 (67%), Positives = 25/34 (73%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P S D  EIQ WKWSV KA K NRERH+ R
Sbjct: 510 IPEKPSSEDPEEIQSWKWSVRKANKINRERHSLR 543


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
           vesca subsp. vesca]
          Length = 973

 Score =  140 bits (352), Expect(2) = 2e-39
 Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCIHI*IILVQIFVEVFWSLLKADH*GKL-KAGLRW 211
           VAR+MKDE+GFYYPHNLDF     P +H    L  +  ++   +L+      L K+GLRW
Sbjct: 535 VARRMKDEDGFYYPHNLDFRGRAYP-MHP--HLNHLSSDLCRGVLEFAEGRPLGKSGLRW 591

Query: 210 LKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LAACM 31
           LKIHLANLY+GGV+KL Y+ R+ FVDNH+DDI DSA  P++G RWWL+AEDP Q LAAC+
Sbjct: 592 LKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACI 651

Query: 30  KLPDSLRSSS 1
            L ++L S S
Sbjct: 652 NLSEALNSPS 661



 Score = 52.0 bits (123), Expect(2) = 2e-39
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           +PE+P S D  EIQ+W+WS  KAKK N+ERH+QR
Sbjct: 493 VPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQR 526


>ref|XP_013604173.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Brassica
           oleracea var. oleracea]
          Length = 975

 Score =  138 bits (347), Expect(2) = 3e-39
 Identities = 76/133 (57%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDEEGFYYPHNLDF     P      H+   L +  +E       A+     K+G
Sbjct: 537 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEF------AEGRPLGKSG 590

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           L WLKIHLANLYAGGV+KL +E R+ FV+NHLDDI+DSA+  I G+RWWL AEDPFQ LA
Sbjct: 591 LYWLKIHLANLYAGGVEKLSHEGRLAFVENHLDDIMDSAENAIHGRRWWLKAEDPFQCLA 650

Query: 39  ACMKLPDSLRSSS 1
           AC+ L  +L+S S
Sbjct: 651 ACVVLAQALKSPS 663



 Score = 53.1 bits (126), Expect(2) = 3e-39
 Identities = 24/34 (70%), Positives = 26/34 (76%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P S D  EIQ WKWSV KAKK NRERH+ R
Sbjct: 495 IPEKPSSEDPEEIQSWKWSVRKAKKTNRERHSLR 528


>emb|CDX76837.1| BnaC08g34230D [Brassica napus]
          Length = 971

 Score =  138 bits (347), Expect(2) = 3e-39
 Identities = 76/133 (57%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDEEGFYYPHNLDF     P      H+   L +  +E       A+     K+G
Sbjct: 533 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEF------AEGRPLGKSG 586

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           L WLKIHLANLYAGGV+KL +E R+ FV+NHLDDI+DSA+  I G+RWWL AEDPFQ LA
Sbjct: 587 LYWLKIHLANLYAGGVEKLSHEGRLAFVENHLDDIMDSAENAIHGRRWWLKAEDPFQCLA 646

Query: 39  ACMKLPDSLRSSS 1
           AC+ L  +L+S S
Sbjct: 647 ACVVLAQALKSPS 659



 Score = 53.1 bits (126), Expect(2) = 3e-39
 Identities = 24/34 (70%), Positives = 26/34 (76%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P S D  EIQ WKWSV KAKK NRERH+ R
Sbjct: 491 IPEKPSSEDPEEIQSWKWSVRKAKKTNRERHSLR 524


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
           gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
           Full=DNA-directed RNA polymerase 3, chloroplastic;
           Flags: Precursor gi|2330560|emb|CAA69972.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|2330564|emb|CAA69717.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
           subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|110739160|dbj|BAF01496.1| chloroplast
           single subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
           polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  142 bits (357), Expect(2) = 4e-39
 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 4/133 (3%)
 Frame = -3

Query: 387 VARKMKDEEGFYYPHNLDFVAVRTPCI----HI*IILVQIFVEVFWSLLKADH*GKLKAG 220
           VARKMKDEEGFYYPHNLDF     P      H+   L +  +E       A+     K+G
Sbjct: 555 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEF------AEGRPLGKSG 608

Query: 219 LRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ*LA 40
           L WLKIHLANLYAGGV+KL ++ R+ FV+NHLDDI+DSA+ PI GKRWWL AEDPFQ LA
Sbjct: 609 LHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLA 668

Query: 39  ACMKLPDSLRSSS 1
           AC+ L  +L+S S
Sbjct: 669 ACVILTQALKSPS 681



 Score = 48.9 bits (115), Expect(2) = 4e-39
 Identities = 21/34 (61%), Positives = 24/34 (70%)
 Frame = -1

Query: 488 IPEEPHSVDAIEIQKWKWSVSKAKKCNRERHAQR 387
           IPE+P S D  E+Q WKWS  KA K NRERH+ R
Sbjct: 513 IPEKPSSEDPEELQSWKWSARKANKINRERHSLR 546