BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00003863
         (697 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY85235.1| RNA polymerase II second largest subunit, partial...    44   7e-06

>gb|AAY85235.1| RNA polymerase II second largest subunit, partial [Tetracentron
           sinense]
          Length = 951

 Score = 43.9 bits (102), Expect(2) = 7e-06
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = -1

Query: 124 HVYEFKKRQPNKFAYIVEVRSIAIS 50
           HVY FKKRQPNK+AY+ EVRS+A S
Sbjct: 105 HVYVFKKRQPNKYAYVAEVRSMAES 129



 Score = 33.5 bits (75), Expect(2) = 7e-06
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 60  SQSQIRPPSGMLLRMLSRAS 1
           ++SQ RPPSGM +RMLSRAS
Sbjct: 127 AESQNRPPSGMFVRMLSRAS 146