BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00001231
         (3640 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                       628   0.0  
emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]   642   0.0  
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|16...   619   0.0  
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   716   0.0  
gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subc...   591   0.0  
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     610   0.0  
emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]   620   0.0  
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   610   0.0  
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...   610   0.0  
dbj|BAB03249.1| polyprotein [Oryza sativa]                            608   0.0  
gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subc...   612   0.0  
gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subc...   608   0.0  
gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subc...   610   0.0  
gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [...   608   0.0  
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc...   606   0.0  
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...   606   0.0  
gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TN...   608   0.0  
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]        607   0.0  
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ...   608   0.0  
emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]           604   0.0  

>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score =  628 bits (1619), Expect(3) = 0.0
 Identities = 308/554 (55%), Positives = 404/554 (72%), Gaps = 5/554 (0%)
 Frame = +3

Query: 1626 VPSTSQPPSLDAETE----PRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMTSPEAPFW 1793
            + S  QP  +  E +    P+RSKR R EK FG DF+   V   P T  EA  S +A  W
Sbjct: 709  IESFEQPHEIVLEEDDNDAPKRSKRQRVEKSFGDDFIVYLVDDTPTTIAEAFASSDADDW 768

Query: 1794 EEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLVAKGYRQQ 1973
            +EA +NE DSI  N TWE+ D P G K +GCKWVFK+ L+ DGTIEK+KARLVAKGY Q+
Sbjct: 769  KEAVHNEMDSILSNGTWEITDRPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQK 828

Query: 1974 EGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMDQPEGFVV 2153
            EG DFFDTYSPV  +T+IR+L+++A+ Y L +HQMDVKTAFL GEL+EEIYM+QP+GFVV
Sbjct: 829  EGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVV 888

Query: 2154 KGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDDSHVIVCL 2333
            KG E KVCKL KSLYGLKQAPKQWHEKF+  + S GF +NE+D+CVY +      VI+CL
Sbjct: 889  KGQESKVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFAINEADRCVYYRCGGGEGVILCL 948

Query: 2334 YVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFDGYSLSQSHYVETV 2513
            YVDD+LI G+N+D IN  KS L+++FDMKDLG ADVIL +K+ K   G +LSQSHYVE V
Sbjct: 949  YVDDILIFGTNIDVINEVKSFLSKSFDMKDLGEADVILNIKLIKADGGITLSQSHYVEKV 1008

Query: 2514 LKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPDIAYTVSRL 2693
            LKRF     KP+ TPYDP+  L+ NK  G+ QL YS+++GSLMYL   TRPDI++ VS+L
Sbjct: 1009 LKRFGFSECKPSPTPYDPSVTLRKNKRIGLDQLRYSQIVGSLMYLAGATRPDISFAVSKL 1068

Query: 2694 SKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSDECKSTSGY 2873
            S++  NPG DHW+AL RV+RYL+GT +Y + +     VL GY D+NWISD+DE  +TSGY
Sbjct: 1069 SRFMSNPGTDHWHALERVMRYLQGTMSYGIHYSGQHAVLEGYSDSNWISDADELYATSGY 1128

Query: 2874 IFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWPKPVSSIAI 3053
            +FT+GG +VSW+S KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  KP+ +I +
Sbjct: 1129 VFTIGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEWLRELLMDLPVVEKPIPAILM 1188

Query: 3054 HCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIADPLTKGLS 3230
            +CD+Q  I    +S  NGKS  H++RR K+V++L ++G+IS+ ++ + +N+ADP TKGL 
Sbjct: 1189 NCDNQTVIAKVTSSKDNGKSSRHVKRRLKSVRKLRNSGVISVTYISTDKNLADPFTKGLP 1248

Query: 3231 REVVRSTSKGMGLK 3272
            R V+   S+ MG++
Sbjct: 1249 RNVIEIASREMGMR 1262



 Score =  154 bits (388), Expect(3) = 0.0
 Identities = 75/125 (60%), Positives = 96/125 (76%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGK++++T IDD SR+C VYLL++KD+ALD FK+YK EVENQ    IK LRSDRGGE+
Sbjct: 467  TKGGKRYFMTLIDDASRFCYVYLLKTKDEALDYFKIYKAEVENQLERKIKRLRSDRGGEF 526

Query: 1124 VIPI-GEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
               +  +FC  +GIIHE T P SPESNG+AERKNRTL D+VNAML + GL    W EA+L
Sbjct: 527  FPKVFDDFCAEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTCGLSKAWWGEAVL 586

Query: 1301 YACYI 1315
             +C++
Sbjct: 587  TSCHV 591



 Score =  122 bits (307), Expect(3) = 0.0
 Identities = 56/96 (58%), Positives = 69/96 (71%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LNR+P  K +KTPYE W GR+PS +Y + WGC+AKV  P +KK K+GP+TVDCVFLGY  
Sbjct: 592  LNRIPMGKEEKTPYEKWVGRKPSLSYLRTWGCMAKVNVPINKKRKLGPRTVDCVFLGYAS 651

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
             + AYRF+V+         +TIMESRD  FFEHIFP
Sbjct: 652  CSIAYRFLVVKSEVPDVYVDTIMESRDATFFEHIFP 687



 Score =  116 bits (291), Expect = 1e-22
 Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 2/259 (0%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS  +++  F +YKM D + +VEQ  E+  +  E+    + + +      +I KLP +W 
Sbjct: 69  GSDLYIMESFHDYKMVDNRSIVEQAHEIQCIAKELDHLKIVLPDRFVAGCIIAKLPSTWR 128

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
            +   L+HK +EI++  L   + VEE    KD     +     + H    ++A+  ++  
Sbjct: 129 NFATALKHKRQEISVENLIASLDVEEKARAKD-----TGSKGGEGH----SSANMVQKNH 179

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGVSKNTIKGDCYNCGKTGHMAKDC--RAXXXXXXXXXX 699
           +   GK    + +K  + K K    KN  +  C+ CG+ GH AKDC  RA          
Sbjct: 180 NKGKGKPKSNKPNKTTNFKKK----KNKAELTCFACGEAGHFAKDCPDRADRRGKKGNVN 235

Query: 700 XXXANVVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDEK 879
              A+  +D GY       +  + +V     WWLD+GA  HVC   N FSSY    D   
Sbjct: 236 TVIASNEEDKGY-----GNLPFIFSVFQSPSWWLDTGANVHVCSDINLFSSYQGARDSSV 290

Query: 880 LFMGNSSTSKVVGKGKVEM 936
           L MGN S + V G G V++
Sbjct: 291 L-MGNGSHASVHGTGTVDL 308


>emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]
          Length = 1105

 Score =  642 bits (1656), Expect(3) = 0.0
 Identities = 315/587 (53%), Positives = 414/587 (70%), Gaps = 30/587 (5%)
 Frame = +3

Query: 1611 DDLSDVP-----STSQPPS--LDAETEPRRSKRVRTEKGFGPDFV--------------- 1724
            D  S VP     S  + PS  ++    PR+S+R R EK  G D +               
Sbjct: 519  DSNSQVPTSVGESLEETPSKVIEQPIVPRKSQRARKEKVLGSDEIDSQRISFYLVEGNRE 578

Query: 1725 --------TLTVKSEPQTYKEAMTSPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTI 1880
                     L ++ +P+TYKEAM S +  FW+EA N+E DSI  N+TWELVDLPPGSK I
Sbjct: 579  DIIRKIPIVLQIEEDPKTYKEAMASRDVAFWKEAINDEMDSIMSNQTWELVDLPPGSKPI 638

Query: 1881 GCKWVFKR*LRTDGTIEKHKARLVAKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYD 2060
            GCKWVF+R   TDG I+  KARLVAKG++Q+EG+D+FDTY+PV   TSIR+L A+ASI++
Sbjct: 639  GCKWVFRRKYHTDGMIQTFKARLVAKGFKQREGIDYFDTYAPVARTTSIRILFALASIHN 698

Query: 2061 LHIHQMDVKTAFLYGELNEEIYMDQPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFN 2240
            L +HQMDVKTAFL G+LNEE+YM+QPEGFV+ G E+KVCKL KSLYGLKQAPKQWHEKF+
Sbjct: 699  LFVHQMDVKTAFLNGDLNEEVYMEQPEGFVLPGNENKVCKLVKSLYGLKQAPKQWHEKFD 758

Query: 2241 HVMISNGFKVNESDKCVYIKSVDDSHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMK 2420
            H ++S+GF+ N +DKC+Y K+ +D  +IVCLYVDDMLIL  ++  I  TK  L+  F MK
Sbjct: 759  HAILSBGFRHNNADKCLYSKTCBDYMIIVCLYVDDMLILSDDMRGIIETKRFLSSTFKMK 818

Query: 2421 DLGPADVILGMKIRKMFDGYSLSQSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEG 2600
            DLG  D ILG+K+++   GY+L+Q+HY+E V+ +F+H   K A TP+D + KL+ N G  
Sbjct: 819  DLGEVDTILGIKVKRNSGGYALNQTHYIEKVVSKFSHLKIKDANTPFDSSIKLEKNDGRS 878

Query: 2601 IYQLEYSRVIGSLMYLMNCTRPDIAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYC 2780
            + QLEY+  IGSLMY   CTR DI++ VS+LS++T NP  +HW A+ RVL YLR T    
Sbjct: 879  VAQLEYASAIGSLMYAAQCTRADISFAVSKLSRFTSNPSVEHWKAIGRVLSYLRNTKELS 938

Query: 2781 LSFGKYPDVL*GYCDANWISDSDECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFI 2960
            L + K+P ++ GY DA+WIS   +  ST+G++FTLGG +VSW S KQTCI+ STME+EFI
Sbjct: 939  LQYSKFPAIIEGYSDASWISSVGDNLSTTGWVFTLGGGAVSWGSKKQTCISHSTMEAEFI 998

Query: 2961 ALEKAGEEAEWIRGFLGGIPLWPKPVSSIAIHCDSQAAIGCAKNSVYNGKSIHLQRRHKT 3140
            AL    +EAEW+R  +  IP     VS+++IHCDSQA +  A + VYNGKS H+  RH+ 
Sbjct: 999  ALAATRKEAEWLRDLMMDIPFTANNVSTVSIHCDSQATLARAYSGVYNGKSRHISIRHEY 1058

Query: 3141 VKQLLSTGIISIDFVRSKENIADPLTKGLSREVVRSTSKGMGLKLIE 3281
            V+QL+  GIISI FVRS  N+ADP TK L+R++VR TS+GMGLKL++
Sbjct: 1059 VRQLIQNGIISISFVRSSGNLADPFTKPLTRDLVRITSRGMGLKLLK 1105



 Score =  146 bits (368), Expect(3) = 0.0
 Identities = 71/125 (56%), Positives = 91/125 (72%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            TRGG  +++TFID+ SR+  V+LL++K +  +AFK+YK EVENQ G  IK LRSDRGGEY
Sbjct: 305  TRGGNXYFJTFIDBXSRFTYVFLLKNKSETFNAFKVYKTEVENQLGKNIKVLRSDRGGEY 364

Query: 1124 V-IPIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE TAP +P+ NG+AERKNRT ++MVNAML  + L  NLW EA+ 
Sbjct: 365  FSSEFNSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNAMLLHAKLNFNLWGEALF 424

Query: 1301 YACYI 1315
             AC+I
Sbjct: 425  TACHI 429



 Score =  103 bits (256), Expect(3) = 0.0
 Identities = 43/87 (49%), Positives = 61/87 (70%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LNR+P KK++ +PYELWKGR+P+  YFKVWGCLA        KTK+ P+ + C F+GY  
Sbjct: 430  LNRIPMKKNEISPYELWKGRKPNIGYFKVWGCLAYCKKTDPNKTKLXPRAIKCAFVGYAS 489

Query: 1495 HTSAYRFMVIGENTIMESRDTVFFEHI 1575
            ++ AYR + +  N I+ESR+  FFE++
Sbjct: 490  NSKAYRLLDLEXNXIIESREVEFFENL 516



 Score = 73.9 bits (180), Expect = 1e-09
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
 Frame = +1

Query: 484 VLDDNAASKKRQGESNKN---GKRNKQRNSKGNHLKPKGGVSK-NTIKGDCYNCGKTGHM 651
           V + N  + K    S  N   GK N ++ + GN++ PK    +    KG  + CGK GH 
Sbjct: 2   VEESNGGTNKANAVSKANHSRGKNNNEKKNSGNYMSPKKNQEQFKGKKGPYFVCGKPGHY 61

Query: 652 AKDCRAXXXXXXXXXXXXXANVVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCK 831
           A++CR               N +D+    T  +S+V +V     V+ WW D+ AT +V  
Sbjct: 62  ARECR-----YRKDQKRVVVNAIDEEIIAT--LSDVCVVQG--KVQGWWYDTCATVYVTY 112

Query: 832 FRNAFSSYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
            ++ F ++     D+++ MGN   SKV+GKG +E+
Sbjct: 113 DKSLFKTFEDAKGDQEVQMGNEGGSKVLGKGTIEV 147


>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|168251067|gb|ACA21850.1| Fourf
            gag/pol protein [Zea mays]
          Length = 1279

 Score =  619 bits (1596), Expect(3) = 0.0
 Identities = 307/544 (56%), Positives = 395/544 (72%), Gaps = 2/544 (0%)
 Frame = +3

Query: 1647 PSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMTSPEAPFWEEASNNEWDSI 1826
            P  D     R+SKR R  K FG DF+   V+  P T  EA +SP+A  W+EA  +E +SI
Sbjct: 734  PEEDDTIVTRKSKRQRVAKSFGNDFIVYLVEDTPTTISEAYSSPDADLWKEAVRSEMESI 793

Query: 1827 QQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLVAKGYRQQEGLDFFDTYSP 2006
              N TWE+VD P G + IGCKW+FK+ LR DGTIE++KARLVAKGY Q+EG DFFDTYSP
Sbjct: 794  MSNGTWEVVDRPYGCQPIGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYSP 853

Query: 2007 VTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMDQPEGFVVKGYEDKVCKLK 2186
            V  +T+IR LIA+A+ Y L IHQMDVKTAFL GEL+EEIYMDQPEGF+  G E+KVC+L 
Sbjct: 854  VARLTTIRTLIAVAASYGLIIHQMDVKTAFLNGELDEEIYMDQPEGFIADGQENKVCRLI 913

Query: 2187 KSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDDSHVIVCLYVDDMLILGSN 2366
            KSLYGLKQAPKQWHEKF++ + + GF VNESD CVY +      V++CLYVDD+LI GSN
Sbjct: 914  KSLYGLKQAPKQWHEKFDNTLTAAGFVVNESDTCVYYRYGGGESVMLCLYVDDILIFGSN 973

Query: 2367 LDSINTTKSMLNENFDMKDLGPADVILGMK-IRKMFDGYSLSQSHYVETVLKRFNHENAK 2543
            L+ I   K++L+ NF+MKDLG ADVIL +K +RK   G +L QSHYVE VL RF   +  
Sbjct: 974  LNVIEEVKNLLSSNFEMKDLGEADVILNIKLVRKADGGVTLLQSHYVEKVLSRFGFSDCD 1033

Query: 2544 PATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPDIAYTVSRLSKYTCNPGQD 2723
            PA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPDI+Y VS+LS++   PG D
Sbjct: 1034 PAPTPYDPSVLLRKNRRIARDQLTYSQIIGSLMYLASATRPDISYAVSKLSRFVSKPGDD 1093

Query: 2724 HWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSDECKSTSGYIFTLGGASVS 2903
            HW AL RVLRYL+GT  Y + +   P VL GYCDANWISD+DE  +TSGY+F  GG +VS
Sbjct: 1094 HWCALERVLRYLKGTMTYGIHYTGNPKVLEGYCDANWISDADELYATSGYVFLFGGGAVS 1153

Query: 2904 WKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWPKPVSSIAIHCDSQAAIGC 3083
            WKS KQT + +STME+E  AL+ AG EAEW+R FL  +P+  KP+ +I+++CD+Q  I  
Sbjct: 1154 WKSCKQTILTKSTMEAELAALDTAGAEAEWLRDFLLDLPVVEKPIPAISMNCDNQTVITK 1213

Query: 3084 AKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIADPLTKGLSREVVRSTSKG 3260
              +S  N KS  H++RR K+V++L ++G+I++D+V +  N+AD  TKGLSR V+ S S+ 
Sbjct: 1214 VNSSRNNMKSTRHVKRRLKSVRKLKNSGVITVDYVHTSNNLADQFTKGLSRNVIESASRE 1273

Query: 3261 MGLK 3272
            MG++
Sbjct: 1274 MGMR 1277



 Score =  154 bits (389), Expect(3) = 0.0
 Identities = 75/125 (60%), Positives = 97/125 (77%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGK++++TFIDD +R+C VYLL++KD+A + FK YK EVENQ    IK LRSDRGGE+
Sbjct: 479  TKGGKRYFLTFIDDSTRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEF 538

Query: 1124 VIPI-GEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
               +  EFC  +GIIHE T P SP+SNG+AERKNRTL D+VNAML+++GL    W EAIL
Sbjct: 539  FSNLFDEFCVEHGIIHERTPPFSPQSNGIAERKNRTLTDLVNAMLSTAGLSKAWWGEAIL 598

Query: 1301 YACYI 1315
             AC++
Sbjct: 599  IACHV 603



 Score =  110 bits (274), Expect(3) = 0.0
 Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LNRVP K  + TP+E W+ R+ + +Y + WGCLAKV  P +KK K+GPKTVDC+FLGY  
Sbjct: 604  LNRVPTKNKEITPFEEWEKRKLNLSYLRTWGCLAKVNVPINKKRKLGPKTVDCIFLGYSF 663

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H++ YRF++I         +TIMESRD  FFE+ FP
Sbjct: 664  HSTGYRFLIIKSDVPDMYVDTIMESRDATFFENEFP 699



 Score =  116 bits (291), Expect = 1e-22
 Identities = 79/257 (30%), Positives = 119/257 (46%), Gaps = 2/257 (0%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +L+ +  +YKM + + VVEQ  E   L  E+      + +      +I KLPPSW 
Sbjct: 75  GSELYLMEQLYDYKMVENRSVVEQAHEFQALAKELELFPCPLPDKFVAGGIIAKLPPSWK 134

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E  + EL   + VEE    KD    +    +N     +    +KK+   
Sbjct: 135 DFATSLKHKRQEFNVEELIGTLDVEERARTKDSGKGVETSTANVVQKRNFRKFNKKK--- 191

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGVSKNTIKGDCYNCGKTGHMAKDCRAXXXXXXXXXXXX 705
            N+N   N  +       K K   +K   KG C+ CG   H A++C              
Sbjct: 192 -NQNKPENANKPVHTAQFKKKNNNNKG--KGGCFVCGSDQHWAREC----PDRKFTQDKK 244

Query: 706 XANVV--DDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDEK 879
            ANVV  +     +G  + +  V +V N  +WW+DSGA  HVC   + F+SY +VG    
Sbjct: 245 SANVVTTETEEGTSGYGNSLPFVLSVCNSPEWWMDSGANIHVCADASMFTSY-QVGRSGA 303

Query: 880 LFMGNSSTSKVVGKGKV 930
           L MGN S + V+G G V
Sbjct: 304 LLMGNGSRAHVLGVGTV 320


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  716 bits (1847), Expect(2) = 0.0
 Identities = 348/548 (63%), Positives = 431/548 (78%)
 Frame = +3

Query: 1638 SQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMTSPEAPFWEEASNNEW 1817
            SQ  + + E EPRRSKRVRTEK FGPDF+T  ++ EPQT+KEA+ S E   W+EA  +E 
Sbjct: 778  SQDQNEEVEVEPRRSKRVRTEKSFGPDFLTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEI 837

Query: 1818 DSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLVAKGYRQQEGLDFFDT 1997
            DSI QN TWELVDLPPG K +  KW+FKR ++ DG+I+K+KARLV KGYRQ EGLD+FDT
Sbjct: 838  DSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDYFDT 897

Query: 1998 YSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMDQPEGFVVKGYEDKVC 2177
            YSPVT I SIRM++AIA++ +L IHQMD+K          EIYM+QPEGF   G E KVC
Sbjct: 898  YSPVTRINSIRMVLAIAALRNLEIHQMDMK----------EIYMEQPEGFSAPGQEKKVC 947

Query: 2178 KLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDDSHVIVCLYVDDMLIL 2357
            KL KSLYGLKQAPKQWHEKF++VM+S+GFK+NE DKCVY+K  +  +VIVCLYVDDMLI+
Sbjct: 948  KLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGYVIVCLYVDDMLIV 1007

Query: 2358 GSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFDGYSLSQSHYVETVLKRFNHEN 2537
            GS+   I +TK+MLN  FDMKD+G ADVILG+KI++  +   LSQSHYV+ +L +F+ +N
Sbjct: 1008 GSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSNELILSQSHYVDKILGKFDKDN 1067

Query: 2538 AKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPDIAYTVSRLSKYTCNPG 2717
            +  A TP D    L  NKGE + Q+EYSR+IGSLMYLM+CTRPDIAY V +LS+YT NPG
Sbjct: 1068 SGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMYLMSCTRPDIAYAVGKLSRYTSNPG 1127

Query: 2718 QDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSDECKSTSGYIFTLGGAS 2897
              HW  + RVL+YLR T +Y L + +YP VL GY DANWIS+  + KS SGY+FTLGGA+
Sbjct: 1128 AKHWQGIIRVLKYLRFTRDYXLHYTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAA 1187

Query: 2898 VSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWPKPVSSIAIHCDSQAAI 3077
            VSWKS+KQT IARSTMESEFIAL+K GEEAEW+R FL  IP W KPV  I IHCDSQ+AI
Sbjct: 1188 VSWKSSKQTVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAI 1247

Query: 3078 GCAKNSVYNGKSIHLQRRHKTVKQLLSTGIISIDFVRSKENIADPLTKGLSREVVRSTSK 3257
            G A++++YNGKS H++RRH T++QLLSTG+IS+D+V+SK+NIADPLTKGL+RE+V  +S 
Sbjct: 1248 GRAQSNMYNGKSRHIRRRHNTIRQLLSTGVISVDYVKSKDNIADPLTKGLNRELVEKSSX 1307

Query: 3258 GMGLKLIE 3281
            GM LK I+
Sbjct: 1308 GMXLKPIK 1315



 Score =  134 bits (337), Expect(2) = 0.0
 Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN+VP KK++KTPYELWKGR+PSY Y ++WGCLAKVA P  KK KIGPKT+DC+F+GY  
Sbjct: 667  LNKVPKKKAEKTPYELWKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAH 726

Query: 1495 HTSAYRFMV-------IGENTIMESRDTVFFEHIFP 1581
            +++AYRF+V       I +NTIMESR+  FFE +FP
Sbjct: 727  NSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVFP 762



 Score =  228 bits (580), Expect = 4e-56
 Identities = 124/313 (39%), Positives = 189/313 (60%), Gaps = 7/313 (2%)
 Frame = +1

Query: 13  LDRWTRKNYMCKNHILNCLDDSLYDFYNAKENFTAFDXXXXXXXXXXXXXXGSKKFLVAR 192
           +D W   +++C+N+++N L DSLY+ Y+ K+  TA +              G+KKF+V R
Sbjct: 89  IDAWKHSDFLCRNYVMNGLADSLYNVYSDKK--TAKELWESLDRKYKTEDAGAKKFVVGR 146

Query: 193 FLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWNEYKRRLRHK 372
           FL+YKM D K VV Q  EL ++++EI AEGM + E+ QV+ +IEKLPP+W ++K  L+HK
Sbjct: 147 FLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHK 206

Query: 373 NREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGESNKNGKRNK 552
            +E+++ +L  ++++EE     D      +     AH L++  A+    G+S+K    N 
Sbjct: 207 RKEMSIEDLIIRLRIEE-----DN----RRSEKKGAHTLNEAKANFVEHGQSSKAKTNNN 257

Query: 553 QRNSKGNHLKPKGGVSKN-TIKGDCYNCGKTGHMAKDCRAXXXXXXXXXXXXXANVVDDS 729
           +   KG+ L PKGG+SK    +G C+NCGK GH + DCR              ANV+DD 
Sbjct: 258 K--GKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCR-----LPKKNKPKEANVIDDI 310

Query: 730 GY------FTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDEKLFMG 891
                    T +VSEVNLV   +N ++WW+D+GATRHVC  +  FS++  + + EK+FMG
Sbjct: 311 TKNVYDIDLTAVVSEVNLVG--SNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMG 368

Query: 892 NSSTSKVVGKGKV 930
           NS+TS++ G+GKV
Sbjct: 369 NSATSEIKGQGKV 381



 Score =  171 bits (434), Expect = 4e-39
 Identities = 93/175 (53%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
 Frame = +2

Query: 929  LK*TPTRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSD 1108
            LK   TRGG K++ITF+DD ++YC VYLL+SKD+A++ F LYK EVENQ    IK LRSD
Sbjct: 538  LKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSD 597

Query: 1109 RGGEYVIPIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWV 1288
            RGGEY  P  + C  +GIIHETTAP SP+SNGVAERKNRTL +M+NAML SS LP N+W 
Sbjct: 598  RGGEYESPFVDICAQHGIIHETTAPYSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWG 657

Query: 1289 EAILYACYI*TEFHLRNPTKLHMSYGKEDNRPMHT-LKCGGVWPRWPLLVPRKPK 1450
            EAIL A Y+  +   +   K      K   +P +T L+  G   +  +  P+K K
Sbjct: 658  EAILTANYLLNKVPKKKAEKTPYELWK-GRKPSYTYLRMWGCLAKVAVPPPKKVK 711


>gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1083

 Score =  591 bits (1523), Expect(4) = 0.0
 Identities = 296/562 (52%), Positives = 400/562 (71%), Gaps = 2/562 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D     R+SKR RT K FG D++   V   P+T +EA +
Sbjct: 520  PHEHFAPIKHNDQTPEENPEEDNIVATRKSKRQRTAKSFGDDYIVYLVDDTPRTIEEAYS 579

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 580  SPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 639

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AK Y Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKT FL GEL EEIYM+
Sbjct: 640  AKDYTQKEGDDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTTFLNGELEEEIYMN 699

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V+KG E  VCKL KSLYGLK+APKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 700  QPDGYVLKGQEGMVCKLLKSLYGLKKAPKQWHEKFDTTLTSTGFIVNEADKCVYYRYGGG 759

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMK-IRKMFDGYSLS 2489
              VI+CLYV D+LI G++L+ I   K  L+++F+MKDLG ADV+L +K +R    G +L 
Sbjct: 760  EGVILCLYVGDILIFGTSLNVIEEVKDFLSKSFEMKDLGVADVVLNIKLLRGDEGGITLV 819

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYD +  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 820  QSHYVDKVLSRFGYSDCKPAPTPYDSSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 879

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 880  ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYEIHYTGYPKVLEGYSDSNWISDAD 939

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TS Y+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 940  EIKATSRYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 999

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++ +I++D+V++ +N+A
Sbjct: 1000 KPVPAILMNCDNQIVIIKVNSSKDNMKSSRHVKRRLKSVRKQKNSRVIALDYVQTAKNLA 1059

Query: 3207 DPLTKGLSREVVRSTSKGMGLK 3272
            D  TKGL R V+ + S+ MGL+
Sbjct: 1060 DQFTKGLPRNVIDNASREMGLR 1081



 Score =  113 bits (282), Expect(4) = 0.0
 Identities = 60/101 (59%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
 Frame = +2

Query: 1016 RSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEYVI-PIGEFCKLNGIIHETTAPSSP 1192
            ++ D+AL  FK+YK EVENQ    IK LRSDRGGEY       FC+  GIIHE T P SP
Sbjct: 309  KNLDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFTSFCEEFGIIHERTPPYSP 368

Query: 1193 ESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAILYACYI 1315
            +SNGVAERKNRTL +MVNAML ++GL    W EAI  AC++
Sbjct: 369  QSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAIFTACHV 409



 Score = 99.4 bits (246), Expect(4) = 0.0
 Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 410  LNKIPVKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 469

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YR +++          TI E RD  FFE+ FP
Sbjct: 470  HSVGYRSLIVNSGVPDMRVGTITEYRDATFFENEFP 505



 Score = 89.4 bits (220), Expect(4) = 0.0
 Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 7/264 (2%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++    +YKM              +L  ++      + +      +I KLPPSW 
Sbjct: 70  GSELYVMEMLYDYKM--------------MLAKKLENNNCELPDKFVAGGIIAKLPPSWL 115

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE    KD          N+   ++  +++   Q +
Sbjct: 116 DFATSLKHKRQEFSVTDLIGSLGVEEKARAKD----------NRGKNIEGGSSTNLVQ-Q 164

Query: 526 SNKNGKRNKQRNSKGN-HLKPKGGVS-----KNTIKGDCYNCGKTGHMAKDCRAXXXXXX 687
            N +   N   N K    +KPK   +     K   KGDC+ CGK GH AK+C        
Sbjct: 165 KNPHASHNNNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKNC-------P 217

Query: 688 XXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKV 864
                  AN V+ +SG  +G  + +  V +V +  DWW+D+G   H             V
Sbjct: 218 DRKDKKSANMVISESGGTSGYGNFLPTVLSVFHSPDWWVDTGTNIH-------------V 264

Query: 865 GDDEKLFMGNSSTSKVVGKGKVEM 936
           G    L MGN S + V G G V++
Sbjct: 265 GRGSSLLMGNESLAVVHGVGTVDL 288


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  610 bits (1574), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 406/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 705  PHEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 764

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 765  SPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 824

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 825  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 884

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 885  QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 944

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 945  EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1004

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1005 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1064

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1065 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1124

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1125 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMETELTALDTATVEAEWLRELLMDLPVVE 1184

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1185 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVITLDYVQTARNLA 1244

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1245 DQFTKGLPRNVIDSASREMGL 1265



 Score =  151 bits (381), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK++ T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 470  TKGGKKYFTTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 529

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 530  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 589

Query: 1301 YACYI 1315
             AC++
Sbjct: 590  TACHV 594



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 595  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 654

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 655  HSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFP 690



 Score =  133 bits (334), Expect = 1e-27
 Identities = 86/269 (31%), Positives = 131/269 (48%), Gaps = 12/269 (4%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 70  GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWS 129

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE    KD                      KK +G 
Sbjct: 130 DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD-------------------VRGKKVEGG 170

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAX 672
           S+ N  + K  ++  N+ K K  V           SK   KGDC+ CGK+GH AKDC   
Sbjct: 171 SSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC--- 227

Query: 673 XXXXXXXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFS 849
                       AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FS
Sbjct: 228 ----PERKDRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFS 283

Query: 850 SYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
           SY +VG    L MGN S + V G G V++
Sbjct: 284 SY-QVGRGSSLLMGNGSLAAVHGVGTVDL 311


>emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]
          Length = 1473

 Score =  620 bits (1598), Expect(3) = 0.0
 Identities = 307/573 (53%), Positives = 399/573 (69%), Gaps = 30/573 (5%)
 Frame = +3

Query: 1611 DDLSDVP-----STSQPPSLDAETE--PRRSKRVRTEKGFGPDFV--------------- 1724
            D  S VP     S  + PS   E    PR+S+R R EK  G D +               
Sbjct: 726  DSNSQVPTSVGESQEETPSKVVEQPIVPRKSQRARKEKVLGSDEIDSQRISFYLVEGNRE 785

Query: 1725 --------TLTVKSEPQTYKEAMTSPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTI 1880
                     L ++ +P+TYKEAM S +  FW+EA N+E DSI  N+TWELVDLPPGSK I
Sbjct: 786  DIIRKIPIVLQIEEDPKTYKEAMASRDVAFWKEAINDEMDSIMSNQTWELVDLPPGSKPI 845

Query: 1881 GCKWVFKR*LRTDGTIEKHKARLVAKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYD 2060
            GCKWVF+R   TDG I+  KARLVAKG++Q+EG+D+FDTY+PV   TSIR+L A+ASI++
Sbjct: 846  GCKWVFRRKYHTDGMIQTFKARLVAKGFKQREGIDYFDTYAPVARTTSIRILFALASIHN 905

Query: 2061 LHIHQMDVKTAFLYGELNEEIYMDQPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFN 2240
            L +HQMDVKTAFL G+LNEE+YM+QPEGFV+ G E+KVCKL KSLYGLKQAPKQWHEKF+
Sbjct: 906  LFVHQMDVKTAFLNGDLNEEVYMEQPEGFVLLGNENKVCKLVKSLYGLKQAPKQWHEKFD 965

Query: 2241 HVMISNGFKVNESDKCVYIKSVDDSHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMK 2420
            H ++S+GF+ N  DKC+Y K+ DD  VIVCLYVDDMLIL  ++  I  TK  L+  F MK
Sbjct: 966  HAILSDGFRHNNVDKCLYSKTCDDYMVIVCLYVDDMLILSDDMXGIIETKRFLSXTFKMK 1025

Query: 2421 DLGPADVILGMKIRKMFDGYSLSQSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEG 2600
            DL   D ILG+K+++   GY+L+Q+HY+E V+ +F+H   K A TP+D + KL+ N G  
Sbjct: 1026 DLXEVDTILGIKVKRNSGGYALNQTHYIEKVVSKFSHLKIKDANTPFDSSIKLEKNBGRS 1085

Query: 2601 IYQLEYSRVIGSLMYLMNCTRPDIAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYC 2780
            + QLEY+  IGSLMY   CTR DI++ VS+LS++T NP  +HW A+ RVL YL+ T    
Sbjct: 1086 VAQLEYASAIGSLMYAAQCTRADISFAVSKLSRFTSNPSVEHWKAIGRVLGYLKNTKELS 1145

Query: 2781 LSFGKYPDVL*GYCDANWISDSDECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFI 2960
            L + K+P ++ GY DA+WIS   +  ST+G++FTLGG +VSW S KQTCI+ STME+EFI
Sbjct: 1146 LQYSKFPAIIEGYSDASWISSVGDNLSTTGWVFTLGGGAVSWGSKKQTCISHSTMEAEFI 1205

Query: 2961 ALEKAGEEAEWIRGFLGGIPLWPKPVSSIAIHCDSQAAIGCAKNSVYNGKSIHLQRRHKT 3140
            AL   G+EAEW+R  +  IP     VS+++IHCDSQA +  A + VYNGKS H+  RH+ 
Sbjct: 1206 ALAATGKEAEWLRDLMMDIPFTANNVSTVSIHCDSQATLARAYSGVYNGKSRHISIRHEY 1265

Query: 3141 VKQLLSTGIISIDFVRSKENIADPLTKGLSREV 3239
            V+QL+  GIISI FVRS  N+ADP TK L+R++
Sbjct: 1266 VRQLIQNGIISISFVRSSGNLADPFTKPLTRDL 1298



 Score =  144 bits (363), Expect(3) = 0.0
 Identities = 80/164 (48%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
 Frame = +2

Query: 827  VSSEMLSPPITK*ETMRNCLWETLLPLKW*EKARLK*TPTRGGKKWYITFIDDHSRYCQV 1006
            V S+M+  P    E   N     LL L   +   L    TRGG ++++TFIDD SR+  V
Sbjct: 478  VKSKMIKKPFHSVERSSN-----LLDLXHSDLCELNGMLTRGGNRYFLTFIDDCSRFTYV 532

Query: 1007 YLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEYV-IPIGEFCKLNGIIHETTAP 1183
            +LL++K +  +AFK+YK EVENQ    IK LRSDRG EY       FC+  GIIHE TAP
Sbjct: 533  FLLKNKSETFNAFKVYKAEVENQLXKNIKVLRSDRGXEYFSSEFNSFCEEYGIIHECTAP 592

Query: 1184 SSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAILYACYI 1315
             +P+ NG+AERKNRT ++MVN ML  + L  NLW EA+L AC+I
Sbjct: 593  YTPQHNGIAERKNRTFLEMVNXMLLHAKLNFNLWGEALLTACHI 636



 Score =  103 bits (256), Expect(3) = 0.0
 Identities = 43/87 (49%), Positives = 61/87 (70%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LNR+P KK + +PYELWKGR+P+  YFKVWGCLA        KTK+GP+ + C F+G   
Sbjct: 637  LNRIPMKKKEISPYELWKGRKPNIGYFKVWGCLAYCKKTDPNKTKLGPRAIKCAFVGCAS 696

Query: 1495 HTSAYRFMVIGENTIMESRDTVFFEHI 1575
            +++AYR + +  N I+ESR+  FFE++
Sbjct: 697  NSNAYRLLDLESNVIIESREVEFFENL 723



 Score =  169 bits (429), Expect = 1e-38
 Identities = 95/300 (31%), Positives = 160/300 (53%), Gaps = 1/300 (0%)
 Frame = +1

Query: 40  MCKNHILNCLDDSLYDFYNAKENFTAFDXXXXXXXXXXXXXXGSKKFLVARFLEYKMTDE 219
           +C+ HILN L D LYD Y      +A +              G+KKFL+++++++K  DE
Sbjct: 75  ICRGHILNALSDRLYDLYT--NTXSAREIWEALENKYKAEEEGTKKFLISQYIDFKFFDE 132

Query: 220 KPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWNEYKRRLRHKNREITMVEL 399
           KP++ Q  EL +++N++    + + E+ QV  ++ KLP SW  Y++R+ HK+ + ++ E+
Sbjct: 133 KPLLPQIHELQVIVNKLKVLKIELPEAFQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEI 192

Query: 400 GKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGESNKNGKRNKQRNSKGNHL 579
            K +++EE    +DK +  S   +NKA     NA SK     ++  GK N  + + GN++
Sbjct: 193 QKHLRIEEESRSRDKMVEESNGGTNKA-----NAISK----ANHPRGKNNNNKKNSGNYM 243

Query: 580 KPKGGVSK-NTIKGDCYNCGKTGHMAKDCRAXXXXXXXXXXXXXANVVDDSGYFTGMVSE 756
            PK    +    KG C+ CGK GH A++CR               N +D+       +S+
Sbjct: 244 SPKKNQEQFKGKKGPCFVCGKPGHYARECR-----FRKDQKGAVVNAIDEE--IIATLSD 296

Query: 757 VNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
           V +V     V+ WW D+ AT HV   ++ F ++     D+++ MGN   SKV+GKG +E+
Sbjct: 297 VCVVQG--KVQGWWYDTCATVHVTYDKSLFKTFEDAKGDQEVQMGNEGKSKVLGKGTIEV 354


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score =  610 bits (1572), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 406/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 850  PHEHFTPIEHNDQTPEENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYS 909

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 910  SPDADYWKEAVRSEMDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 969

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 970  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 1029

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 1030 QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1089

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 1090 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1149

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1150 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1209

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1210 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1269

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1270 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVE 1329

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1330 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1389

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1390 DQFTKGLPRNVIDSASREMGL 1410



 Score =  150 bits (379), Expect(3) = 0.0
 Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 615  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 674

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W E +L
Sbjct: 675  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVL 734

Query: 1301 YACYI 1315
             AC++
Sbjct: 735  TACHV 739



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 740  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 799

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 800  HSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFP 835



 Score =  133 bits (334), Expect = 1e-27
 Identities = 86/269 (31%), Positives = 131/269 (48%), Gaps = 12/269 (4%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 215 GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWS 274

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE    KD                      KK +G 
Sbjct: 275 DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD-------------------VRGKKVEGG 315

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAX 672
           S+ N  + K  ++  N+ K K  V           SK   KGDC+ CGK+GH AKDC   
Sbjct: 316 SSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC--- 372

Query: 673 XXXXXXXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFS 849
                       AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FS
Sbjct: 373 ----PERKDRKSANMIISEGGGTSGYGKILPRVLSVFHSPDWWVDTGANIHVCADISLFS 428

Query: 850 SYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
           SY +VG    L MGN S + V G G V++
Sbjct: 429 SY-QVGRGSSLLMGNGSLAAVHGVGTVDL 456


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score =  610 bits (1572), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 406/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 831  PHEHFTPIEHNDQTPEENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYS 890

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 891  SPDADYWKEAVRSEMDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 950

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 951  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 1010

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 1011 QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1070

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 1071 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1130

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1131 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1190

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1191 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1250

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1251 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVE 1310

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1311 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1370

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1371 DQFTKGLPRNVIDSASREMGL 1391



 Score =  150 bits (379), Expect(3) = 0.0
 Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 596  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 655

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W E +L
Sbjct: 656  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVL 715

Query: 1301 YACYI 1315
             AC++
Sbjct: 716  TACHV 720



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 721  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 780

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 781  HSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFP 816



 Score =  133 bits (334), Expect = 1e-27
 Identities = 86/269 (31%), Positives = 131/269 (48%), Gaps = 12/269 (4%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 196 GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWS 255

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE    KD                      KK +G 
Sbjct: 256 DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD-------------------VRGKKVEGG 296

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAX 672
           S+ N  + K  ++  N+ K K  V           SK   KGDC+ CGK+GH AKDC   
Sbjct: 297 SSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC--- 353

Query: 673 XXXXXXXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFS 849
                       AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FS
Sbjct: 354 ----PERKDRKSANMIISEGGGTSGYGKILPRVLSVFHSPDWWVDTGANIHVCADISLFS 409

Query: 850 SYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
           SY +VG    L MGN S + V G G V++
Sbjct: 410 SY-QVGRGSSLLMGNGSLAAVHGVGTVDL 437


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score =  608 bits (1568), Expect(3) = 0.0
 Identities = 302/561 (53%), Positives = 406/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 705  PHEYFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 764

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 765  SPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 824

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 825  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 884

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWH+KF+  + S GF VNE+DKCVY +    
Sbjct: 885  QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHKKFDTTLTSAGFVVNEADKCVYYRYGGG 944

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 945  EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1004

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1005 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1064

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1065 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1124

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1125 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1184

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1185 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1244

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1245 DQFTKGLPRNVIDSASREMGL 1265



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 470  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 529

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 530  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 589

Query: 1301 YACYI 1315
             AC++
Sbjct: 590  TACHV 594



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 595  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 654

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 655  HSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFP 690



 Score =  132 bits (332), Expect = 2e-27
 Identities = 85/269 (31%), Positives = 131/269 (48%), Gaps = 12/269 (4%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 70  GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWS 129

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++++L   + VEE    KD                      KK +G 
Sbjct: 130 DFATSLKHKRQEFSVLDLIGSLGVEEKARAKD-------------------VRGKKVEGG 170

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAX 672
           S+ N  + K  ++  N+ K K  V           SK    GDC+ CGK+GH AKDC   
Sbjct: 171 SSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKANGDCFVCGKSGHWAKDC--- 227

Query: 673 XXXXXXXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFS 849
                       AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FS
Sbjct: 228 ----PERKDRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFS 283

Query: 850 SYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
           SY +VG    L MGN S + V G G V++
Sbjct: 284 SY-QVGRGSSLLMGNGSLAAVHGVGTVDL 311


>gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1286

 Score =  612 bits (1577), Expect(3) = 0.0
 Identities = 304/561 (54%), Positives = 406/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 723  PHEHFAPIEHNDETPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 782

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 783  SPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 842

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 843  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 902

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E+ VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 903  QPDGYVLEGQEEMVCKLLKSLYGLKQAPKQWHEKFDITLTSAGFVVNEADKCVYYRYGGG 962

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L++NF+MKDLG ADVIL +K+++  + G +L 
Sbjct: 963  EGVILCLYVDDILIFGTSLNVIEEVKDYLSKNFEMKDLGEADVILNIKLQRGDEGGITLV 1022

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1023 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1082

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1083 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1142

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1143 EIKATSGYAFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1202

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1203 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1262

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1263 DQFTKGLPRNVIDSASREMGL 1283



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 488  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEY 547

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 548  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 607

Query: 1301 YACYI 1315
             AC++
Sbjct: 608  TACHV 612



 Score =  101 bits (252), Expect(3) = 0.0
 Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 7/95 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P  KK K+GPKTVDCVFLGY  
Sbjct: 613  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIVKKRKLGPKTVDCVFLGYAI 672

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIF 1578
            H+  YRF+++          TI ESRD  FFE+ F
Sbjct: 673  HSVGYRFLIVNSGVPDMHAGTIFESRDATFFENEF 707



 Score = 95.5 bits (236), Expect = 3e-16
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 1/167 (0%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 246 GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWS 305

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE    KD   +  K +   +     N   KK    
Sbjct: 306 DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD---IRGKKVEGGSSA---NMVQKKNPHA 359

Query: 526 SNKNGKRNKQRNSK-GNHLKPKGGVSKNTIKGDCYNCGKTGHMAKDC 663
           S+ N K       K   + K KG   K   KGDC+ CGK+GH AKDC
Sbjct: 360 SHNNKKVKPDVKPKAATNFKKKG---KGKAKGDCFVCGKSGHWAKDC 403


>gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1457

 Score =  608 bits (1568), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 404/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       D  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 894  PHEHFAPIEHDDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 953

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 954  SPDADYWKEAVRSEMDSIMSNGTWEVVEHPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 1013

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 1014 AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 1073

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 1074 QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1133

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 1134 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1193

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDPN  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1194 QSHYVDKVLSRFGYSDCKPAPTPYDPNVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1253

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD++
Sbjct: 1254 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAN 1313

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+ SGY FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1314 EIKAISGYAFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1373

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1374 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1433

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1434 DQFTKGLPRNVIDSASREMGL 1454



 Score =  150 bits (379), Expect(3) = 0.0
 Identities = 75/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 659  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEY 718

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE + P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 719  FSNEFASFCEEFGIIHEMSPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 778

Query: 1301 YACYI 1315
             AC++
Sbjct: 779  TACHV 783



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 784  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 843

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 844  HSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFP 879



 Score =  129 bits (324), Expect = 2e-26
 Identities = 85/259 (32%), Positives = 128/259 (49%), Gaps = 2/259 (0%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 259 GSELYVMEQFYDYKMVDDRSVVEQAYEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWS 318

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           +    L+HK +E ++ +L   + VEE    K    +  K +   +     N   KK    
Sbjct: 319 DLATSLKHKRQEFSVPDLIGSLGVEEKARAK---YVRGKKVEGGSSA---NMVQKKNPHA 372

Query: 526 SNKNGKRNKQRNSK-GNHLKPKGGVSKNTIKGDCYNCGKTGHMAKDCRAXXXXXXXXXXX 702
           S+ N K       K   + K KG   K   KGDC+ CGK+GH AKDC             
Sbjct: 373 SHNNKKVKPDVKPKAATNFKKKG---KGKAKGDCFVCGKSGHWAKDC-------PERKDR 422

Query: 703 XXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDEK 879
             AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FSSY +VG    
Sbjct: 423 KSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSY-QVGRGSS 481

Query: 880 LFMGNSSTSKVVGKGKVEM 936
           L MGN S + V G G V++
Sbjct: 482 LLMGNGSLAAVHGVGTVDL 500


>gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1357

 Score =  610 bits (1573), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 406/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 794  PHEHFAPIEHNDQTPEKNPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 853

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 854  SPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 913

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 914  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 973

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 974  QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1033

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 1034 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1093

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1094 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1153

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1154 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1213

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1214 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1273

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1274 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1333

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1334 DQFTKGLPRNVIDSASREMGL 1354



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 559  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEY 618

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 619  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 678

Query: 1301 YACYI 1315
             AC++
Sbjct: 679  TACHV 683



 Score =  102 bits (255), Expect(3) = 0.0
 Identities = 46/96 (47%), Positives = 63/96 (65%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P  KK K+GPKTVDCVFLGY  
Sbjct: 684  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIDKKRKLGPKTVDCVFLGYAI 743

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            ++  YRF+++          TI ESRD  FFE+ FP
Sbjct: 744  YSVGYRFLIVNSGVPDMHAGTIFESRDATFFENEFP 779



 Score = 89.4 bits (220), Expect = 2e-14
 Identities = 74/259 (28%), Positives = 111/259 (42%), Gaps = 2/259 (0%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D+                 +A G           +I KLPPSW+
Sbjct: 198 GSELYVMEQFYDYKMPDK----------------FVAGG-----------IIAKLPPSWS 230

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE     D   +  K +   +     N   KK    
Sbjct: 231 DFATSLKHKRQEFSVPDLIGSLGVEEKARAND---VRGKKVEGGSSA---NMVQKKNPHA 284

Query: 526 SNKNGKRNKQRNSKG-NHLKPKGGVSKNTIKGDCYNCGKTGHMAKDCRAXXXXXXXXXXX 702
           S+ N K       K   + K KG   K   KGDC+ CGK+GH AKDC             
Sbjct: 285 SHNNKKVKPDVKPKAATNFKKKG---KGKAKGDCFVCGKSGHWAKDC-------PERKDR 334

Query: 703 XXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDEK 879
             AN ++ + G  +G    +  V +V +  DWW+D+GA  H             VG    
Sbjct: 335 KSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIH-------------VGRGSS 381

Query: 880 LFMGNSSTSKVVGKGKVEM 936
           L MGN S + V G G V++
Sbjct: 382 LLMGNGSLAAVHGVGTVDL 400


>gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
          Length = 804

 Score =  608 bits (1568), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 404/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       D  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 241  PHEHFAPIEHDDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 300

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 301  SPDADYWKEAVRSEMDSIMSNGTWEVVEHPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 360

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 361  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 420

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 421  QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 480

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 481  EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 540

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDPN  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 541  QSHYVDKVLSRFGYSDCKPAPTPYDPNVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 600

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD++
Sbjct: 601  ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAN 660

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+ SGY FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 661  EIKAISGYAFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 720

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 721  KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 780

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 781  DQFTKGLPRNVIDSASREMGL 801



 Score =  150 bits (379), Expect(3) = 0.0
 Identities = 75/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 6    TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEY 65

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE + P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 66   FSNEFASFCEEFGIIHEMSPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 125

Query: 1301 YACYI 1315
             AC++
Sbjct: 126  TACHV 130



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 131  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 190

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 191  HSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFP 226


>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1479

 Score =  606 bits (1563), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 405/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 916  PHEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 975

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K IGCKWVFK+ LR DGTIEK+KARLV
Sbjct: 976  SPDADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLV 1035

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 1036 AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 1095

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 1096 QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1155

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 1156 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1215

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1216 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1275

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1276 ISFAVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1335

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1336 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1395

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1396 KPVPAILMNCDNQIVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1455

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL   V+ S S+ MGL
Sbjct: 1456 DQFTKGLPCNVIDSASREMGL 1476



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 681  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 740

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 741  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 800

Query: 1301 YACYI 1315
             AC++
Sbjct: 801  TACHV 805



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 806  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 865

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 866  HSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFP 901



 Score =  133 bits (334), Expect = 1e-27
 Identities = 86/269 (31%), Positives = 131/269 (48%), Gaps = 12/269 (4%)
 Frame = +1

Query: 166  GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
            GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 281  GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWS 340

Query: 346  EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
            ++   L+HK +E ++ +L   + VEE    KD                      KK +G 
Sbjct: 341  DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD-------------------VRGKKVEGG 381

Query: 526  SNKNGKRNKQRNSKGNHLKPKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAX 672
            S+ N  + K  ++  N+ K K  V           SK   KGDC+ CGK+GH AKDC   
Sbjct: 382  SSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC--- 438

Query: 673  XXXXXXXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFS 849
                        AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FS
Sbjct: 439  ----PERKDRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFS 494

Query: 850  SYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
            SY +VG    L MGN S + V G G V++
Sbjct: 495  SY-QVGRGSSLLMGNGSLAAVHGVGTVDL 522


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score =  606 bits (1563), Expect(3) = 0.0
 Identities = 303/561 (54%), Positives = 405/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 845  PHEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 904

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K IGCKWVFK+ LR DGTIEK+KARLV
Sbjct: 905  SPDADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLV 964

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 965  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 1024

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 1025 QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1084

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 1085 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1144

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1145 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1204

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1205 ISFAVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1264

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1265 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1324

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1325 KPVPAILMNCDNQIVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1384

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL   V+ S S+ MGL
Sbjct: 1385 DQFTKGLPCNVIDSASREMGL 1405



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 610  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 669

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 670  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 729

Query: 1301 YACYI 1315
             AC++
Sbjct: 730  TACHV 734



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 735  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 794

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 795  HSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFP 830



 Score =  133 bits (334), Expect = 1e-27
 Identities = 86/269 (31%), Positives = 131/269 (48%), Gaps = 12/269 (4%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 210 GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWS 269

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE    KD                      KK +G 
Sbjct: 270 DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD-------------------VRGKKVEGG 310

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAX 672
           S+ N  + K  ++  N+ K K  V           SK   KGDC+ CGK+GH AKDC   
Sbjct: 311 SSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC--- 367

Query: 673 XXXXXXXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFS 849
                       AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FS
Sbjct: 368 ----PERKDRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFS 423

Query: 850 SYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
           SY +VG    L MGN S + V G G V++
Sbjct: 424 SY-QVGRGSSLLMGNGSLAAVHGVGTVDL 451


>gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TNT [Oryza sativa]
            gi|31429907|gb|AAP51896.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1342

 Score =  608 bits (1567), Expect(3) = 0.0
 Identities = 304/561 (54%), Positives = 403/561 (71%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 779  PHEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 838

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 839  SPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 898

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG D FDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 899  AKGYTQKEGEDLFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 958

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 959  QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1018

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKI-RKMFDGYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+ R   DG +L 
Sbjct: 1019 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEDGITLV 1078

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+  G  QL YS++IGSLMYL + TRP 
Sbjct: 1079 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIGRDQLRYSQIIGSLMYLASATRPG 1138

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1139 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1198

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY FTLGG +VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1199 EIKATSGYAFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1258

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1259 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1318

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1319 DQFTKGLPRNVIDSASREMGL 1339



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 544  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEY 603

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 604  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 663

Query: 1301 YACYI 1315
             AC++
Sbjct: 664  TACHV 668



 Score =  104 bits (259), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P  KK K+GPKTVDCVFLGY  
Sbjct: 669  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIVKKRKLGPKTVDCVFLGYAI 728

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI ESRD  FFE+ FP
Sbjct: 729  HSVGYRFLIVNSGVPDMHAGTIFESRDATFFENEFP 764



 Score = 65.9 bits (159), Expect = 3e-07
 Identities = 30/92 (32%), Positives = 54/92 (58%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  ++      + +      +I KLPPSW+
Sbjct: 255 GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKKLENNNCELPDKFVAGGIIAKLPPSWS 314

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKD 441
           ++   L+HK +E ++ +L   + VEE    KD
Sbjct: 315 DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD 346


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  607 bits (1564), Expect(3) = 0.0
 Identities = 301/561 (53%), Positives = 405/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 758  PHEHFAPIEHNDQTPEENPEKDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 817

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N+TWE+V+ P G K +GCKWVFK+ L+ DGTIEK+KARLV
Sbjct: 818  SPDADYWKEAVRSEMDSIMSNDTWEVVERPYGCKPVGCKWVFKKKLKPDGTIEKYKARLV 877

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYS V  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 878  AKGYTQKEGEDFFDTYSLVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 937

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 938  QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 997

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 998  EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1057

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA TPYDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1058 QSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1117

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+RYL+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1118 ISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1177

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG  VSWKS KQT + RSTME+E  AL+ A  EAEW+R  L  +P+  
Sbjct: 1178 EIKATSGYVFTLGGGDVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVE 1237

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1238 KPVPAILMNCDNQTMIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1297

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1298 DQFTKGLPRNVIDSASREMGL 1318



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 523  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 582

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 583  FSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 642

Query: 1301 YACYI 1315
             AC++
Sbjct: 643  TACHV 647



 Score =  104 bits (260), Expect(3) = 0.0
 Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +K+ K+GPKTVDCVFLGY  
Sbjct: 648  LNKIPMKHKEITPFEEWERKKLNLSYLRTWGCLAKVNVPIAKRRKLGPKTVDCVFLGYAI 707

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 708  HSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFP 743



 Score =  117 bits (294), Expect = 6e-23
 Identities = 86/310 (27%), Positives = 138/310 (44%), Gaps = 16/310 (5%)
 Frame = +1

Query: 55  ILNCLDDSLYDFY----NAKENFTAFDXXXXXXXXXXXXXXGSKKFLVARFLEYKMTDEK 222
           +++ L D++ D Y    + KE + A +              GS+ +++ +F +YKM D++
Sbjct: 100 LISVLADNIVDVYMYMPSGKEMWDALEAKFGVSDA------GSELYVMEQFYDYKMVDDR 153

Query: 223 PVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWNEYKRRLRHKNREITMVELG 402
            +VEQ  E+ +L  E+      + +      +I KLPPSW+++   L+HK +E ++ +L 
Sbjct: 154 SIVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 213

Query: 403 KKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGESNKNGKRNKQRNSKGNHLK 582
             + VEE    KD                      KK +G S+ N  + K  ++  N+ K
Sbjct: 214 GSLGVEEKARAKD-------------------VRGKKVEGGSSANMVQKKNPHASHNNKK 254

Query: 583 PKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAXXXXXXXXXXXXXAN-VVDD 726
            K  V           SK   KGDC+ CGK+GH AKDC               AN ++ +
Sbjct: 255 VKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC-------PERKDRKSANMIISE 307

Query: 727 SGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDEKLFMGNSSTS 906
            G  +G    +  V +V +  DWW+D+GA  H             VG    L MGN S +
Sbjct: 308 GGGTSGYGKILPTVLSVFHSPDWWVDTGANIH-------------VGRGSSLLMGNGSLA 354

Query: 907 KVVGKGKVEM 936
            V G G V++
Sbjct: 355 AVHGVGTVDL 364


>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  608 bits (1567), Expect(3) = 0.0
 Identities = 307/582 (52%), Positives = 413/582 (70%), Gaps = 12/582 (2%)
 Frame = +3

Query: 1563 FRTHFPLGSGPHKRVRDDLSD----VP------STSQPPSLDAETEPRRSKRVRTEKGFG 1712
            F   FP+ + P    ++ +      VP      +  + P  D     R+SKR RT K FG
Sbjct: 685  FENEFPMKNAPSTSSQEPILSPEHFVPIEHIDQTLEENPEEDNIVATRKSKRQRTAKSFG 744

Query: 1713 PDFVTLTVKSEPQTYKEAMTSPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKW 1892
             D++   V   P+T +EA +SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKW
Sbjct: 745  DDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKW 804

Query: 1893 VFKR*LRTDGTIEKHKARLVAKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIH 2072
            VFK+ LR DGTIEK+KARLVAKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +H
Sbjct: 805  VFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVH 864

Query: 2073 QMDVKTAFLYGELNEEIYMDQPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMI 2252
            QMDVKTAFL GEL EEIYMDQP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF++ + 
Sbjct: 865  QMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDNTLT 924

Query: 2253 SNGFKVNESDKCVYIKSVDDSHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGP 2432
            S GF VNE+DKCVY +      VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG 
Sbjct: 925  SAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDFLSKSFEMKDLGV 984

Query: 2433 ADVILGMK-IRKMFDGYSLSQSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQ 2609
            ADVIL +K +R    G +L QSHYV+ VL RF + + K A TPYDP+  L+ N+     Q
Sbjct: 985  ADVILNIKLLRGDEGGITLVQSHYVDKVLSRFGYSDCKAAPTPYDPSVLLRKNRRIARDQ 1044

Query: 2610 LEYSRVIGSLMYLMNCTRPDIAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSF 2789
            L YS++IGSLMYL + TRPDI++ VS+LS++  NPG DHW+AL RV+RYL+GT +Y + +
Sbjct: 1045 LRYSQIIGSLMYLASATRPDISFAVSKLSQFVSNPGDDHWHALERVMRYLKGTMSYGIHY 1104

Query: 2790 GKYPDVL*GYCDANWISDSDECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALE 2969
              YP VL GY D+NWISD+DE K+TSGY+FTLGG +VSWKS KQT + RSTME+E  AL+
Sbjct: 1105 AGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALD 1164

Query: 2970 KAGEEAEWIRGFLGGIPLWPKPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVK 3146
             A  EAEW+R  L  +P+  KPV +I ++CD+Q  I    +S  N KS  H++RR K+V+
Sbjct: 1165 TATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHVKRRLKSVR 1224

Query: 3147 QLLSTGIISIDFVRSKENIADPLTKGLSREVVRSTSKGMGLK 3272
            +  ++G+I++D+V++ +N+AD  TKGL R V+   S+ MGL+
Sbjct: 1225 KQKNSGVIALDYVQTAKNLADQFTKGLPRNVIDCASREMGLR 1266



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 77/125 (61%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 470  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEY 529

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNGVAERKNRTL +MVNAML ++GL    W EAIL
Sbjct: 530  FSNEFTSFCEEYGIIHERTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAIL 589

Query: 1301 YACYI 1315
             AC++
Sbjct: 590  TACHV 594



 Score =  103 bits (257), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LNR+P K  + TP+E W+ ++ + ++ + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 595  LNRIPTKHKEVTPFEEWERKKLNLSHLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 654

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI ESRD  FFE+ FP
Sbjct: 655  HSVGYRFLIVNSGVPDMRVGTITESRDATFFENEFP 690



 Score =  134 bits (338), Expect = 5e-28
 Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 3/260 (1%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L+ E+      + +      +I KLPPSW+
Sbjct: 70  GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLVKELENNHCELPDKFVAGGIIAKLPPSWS 129

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + +EE    KD      +  S+       N   KK    
Sbjct: 130 DFATSLKHKRQEFSVTDLIGSLGIEEKARAKDNRGKKIEGGSSA------NLVQKKNPHA 183

Query: 526 SNKNGKRNKQ--RNSKGNHLKPKGGVSKNTIKGDCYNCGKTGHMAKDCRAXXXXXXXXXX 699
           S+ N K+ K   +     + K KG   K   KGDC+ CGK GH AKDC            
Sbjct: 184 SHNNNKKVKPDVKPKATTNFKKKG---KGKAKGDCFVCGKPGHWAKDC-------PERKD 233

Query: 700 XXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFSSYNKVGDDE 876
              AN V+ + G   G    +  V +V +  DWW+D+GA  HVC   + FSSY +VG   
Sbjct: 234 KKSANMVISEDGGTLGYGKFLPTVLSVCHSPDWWVDTGANIHVCADISLFSSY-QVGRGS 292

Query: 877 KLFMGNSSTSKVVGKGKVEM 936
            L MGN S + V G G V++
Sbjct: 293 SLLMGNGSLAAVHGVGTVDL 312


>emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]
          Length = 1413

 Score =  604 bits (1558), Expect(3) = 0.0
 Identities = 300/561 (53%), Positives = 405/561 (72%), Gaps = 2/561 (0%)
 Frame = +3

Query: 1593 PHKRVRDDLSDVPSTSQPPSLDAETEPRRSKRVRTEKGFGPDFVTLTVKSEPQTYKEAMT 1772
            PH+       +  +  + P  D   + R+SKR R  K FG D++   V   P+T +EA +
Sbjct: 850  PHEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYS 909

Query: 1773 SPEAPFWEEASNNEWDSIQQNETWELVDLPPGSKTIGCKWVFKR*LRTDGTIEKHKARLV 1952
            SP+A +W+EA  +E DSI  N TWE+V+ P G K +GCKWVFK+ LR DGTIEK+KARLV
Sbjct: 910  SPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 969

Query: 1953 AKGYRQQEGLDFFDTYSPVTIITSIRMLIAIASIYDLHIHQMDVKTAFLYGELNEEIYMD 2132
            AKGY Q+EG DFFDTYSPV  +T+IR+L+A+A+ + L +HQMDVKTAFL GEL EEIYMD
Sbjct: 970  AKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMD 1029

Query: 2133 QPEGFVVKGYEDKVCKLKKSLYGLKQAPKQWHEKFNHVMISNGFKVNESDKCVYIKSVDD 2312
            QP+G+V++G E  VCKL KSLYGLKQAPKQWHEKF+  + S GF VNE+DKCVY +    
Sbjct: 1030 QPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGG 1089

Query: 2313 SHVIVCLYVDDMLILGSNLDSINTTKSMLNENFDMKDLGPADVILGMKIRKMFD-GYSLS 2489
              VI+CLYVDD+LI G++L+ I   K  L+++F+MKDLG ADVIL +K+++  + G +L 
Sbjct: 1090 EGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLV 1149

Query: 2490 QSHYVETVLKRFNHENAKPATTPYDPNCKLKNNKGEGIYQLEYSRVIGSLMYLMNCTRPD 2669
            QSHYV+ VL RF + + KPA T YDP+  L+ N+     QL YS++IGSLMYL + TRPD
Sbjct: 1150 QSHYVDKVLSRFGYSDCKPAPTSYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPD 1209

Query: 2670 IAYTVSRLSKYTCNPGQDHWNALYRVLRYLRGTSNYCLSFGKYPDVL*GYCDANWISDSD 2849
            I++ VS+LS++  NPG DHW AL RV+R+L+GT +Y + +  YP VL GY D+NWISD+D
Sbjct: 1210 ISFAVSKLSRFVSNPGDDHWQALERVMRHLKGTMSYGIHYTGYPKVLEGYSDSNWISDAD 1269

Query: 2850 ECKSTSGYIFTLGGASVSWKSTKQTCIARSTMESEFIALEKAGEEAEWIRGFLGGIPLWP 3029
            E K+TSGY+FTLGG +VSWKS KQT + RSTME+E  +L+ A  EAEW+R  L  +P+  
Sbjct: 1270 EIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTSLDTATVEAEWLRELLMDLPVVE 1329

Query: 3030 KPVSSIAIHCDSQAAIGCAKNSVYNGKSI-HLQRRHKTVKQLLSTGIISIDFVRSKENIA 3206
            KPV +I ++CD+Q  I    +S  N KS  H++RR K+V++  ++G+I++D+V++  N+A
Sbjct: 1330 KPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLA 1389

Query: 3207 DPLTKGLSREVVRSTSKGMGL 3269
            D  TKGL R V+ S S+ MGL
Sbjct: 1390 DQFTKGLPRNVIDSASREMGL 1410



 Score =  150 bits (380), Expect(3) = 0.0
 Identities = 75/125 (60%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +2

Query: 944  TRGGKKWYITFIDDHSRYCQVYLLRSKDKALDAFKLYKLEVENQRGVTIKTLRSDRGGEY 1123
            T+GGKK+++T IDD +R+C VYLL++KD+AL  FK+YK EVENQ    IK LRSDRGGEY
Sbjct: 615  TKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEY 674

Query: 1124 VI-PIGEFCKLNGIIHETTAPSSPESNGVAERKNRTLIDMVNAMLASSGLPSNLWVEAIL 1300
                   FC+  GIIHE T P SP+SNG+AERKNRTL +MVNAML ++GL    W EA+L
Sbjct: 675  FSNEFASFCEEFGIIHEMTPPYSPQSNGMAERKNRTLTEMVNAMLDTAGLSKEWWGEAVL 734

Query: 1301 YACYI 1315
             AC++
Sbjct: 735  TACHV 739



 Score =  106 bits (264), Expect(3) = 0.0
 Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
 Frame = +1

Query: 1315 LNRVPFKKSDKTPYELWKGRQPSYAYFKVWGCLAKVATPRSKKTKIGPKTVDCVFLGYPE 1494
            LN++P K  + TP+E W+ ++ + +Y + WGCLAKV  P +KK K+GPKTVDCVFLGY  
Sbjct: 740  LNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAI 799

Query: 1495 HTSAYRFMVIGE-------NTIMESRDTVFFEHIFP 1581
            H+  YRF+++          TI+ESRD  FFE+ FP
Sbjct: 800  HSVGYRFLIVNSGVPNMHVGTILESRDATFFENEFP 835



 Score =  132 bits (331), Expect = 3e-27
 Identities = 86/269 (31%), Positives = 131/269 (48%), Gaps = 12/269 (4%)
 Frame = +1

Query: 166 GSKKFLVARFLEYKMTDEKPVVEQFVELHLLINEILAEGMHIDESLQVSTVIEKLPPSWN 345
           GS+ +++ +F +YKM D++ VVEQ  E+ +L  E+      + +      +I KLPPSW+
Sbjct: 215 GSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWS 274

Query: 346 EYKRRLRHKNREITMVELGKKIQVEELLCCKDKSLMLSKDMSNKAHVLDDNAASKKRQGE 525
           ++   L+HK +E ++ +L   + VEE    KD                      KK +G 
Sbjct: 275 DFATSLKHKRQEFSVPDLIGSLGVEEKARAKD-------------------VRGKKVEGG 315

Query: 526 SNKNGKRNKQRNSKGNHLKPKGGV-----------SKNTIKGDCYNCGKTGHMAKDCRAX 672
           S+ N  + K  ++  N+ K K  V           SK   KGDC+ CGK+GH AKDC   
Sbjct: 316 SSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC--- 372

Query: 673 XXXXXXXXXXXXAN-VVDDSGYFTGMVSEVNLVSNVTNVRDWWLDSGATRHVCKFRNAFS 849
                       AN ++ + G  +G    +  V +V +  DWW+D+GA  HVC   + FS
Sbjct: 373 ----PERKDRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFS 428

Query: 850 SYNKVGDDEKLFMGNSSTSKVVGKGKVEM 936
           SY +VG    L MGN S + V G G V++
Sbjct: 429 SY-QVGRGFSLLMGNGSLAAVHGVGTVDL 456