BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00055682
         (750 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     172   1e-52
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   202   1e-49
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   201   2e-49
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]   158   2e-47
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        193   5e-47
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               193   6e-47
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                193   6e-47
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     191   2e-46
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         191   3e-46
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           191   3e-46
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   190   5e-46
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   187   3e-45
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   187   3e-45
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   186   6e-45
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     186   1e-44
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   186   1e-44
gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe...   174   2e-41
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   173   7e-41
emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]   137   2e-40
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   171   2e-40

>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  172 bits (436), Expect(2) = 1e-52
 Identities = 92/197 (46%), Positives = 121/197 (61%), Gaps = 3/197 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMC ++D F TY  V GGT +MG+   C+   V TVQ++   G I TLS+VRH+P+L+
Sbjct: 307 TYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLSDVRHIPNLK 366

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+   YKY    G LKV     + M  + +  NLY ++G  + G    VS S
Sbjct: 367 RSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVRGTTILGNIAAVSDS 426

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 427 LYNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 484

Query: 217 VHQTHGMLDYIHSDVWG 167
            H T  +LDY+HSD+WG
Sbjct: 485 THTTESILDYVHSDLWG 501



 Score = 61.6 bits (148), Expect(2) = 1e-52
 Identities = 31/63 (49%), Positives = 39/63 (61%)
 Frame = -1

Query: 189 TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
           + +R+FG        AY HV   KL  RA K IFLGYP GVK Y+LWCP+  K +IS +V
Sbjct: 536 SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCPKTKKVVISRNV 589

Query: 9   TFN 1
            F+
Sbjct: 590 VFH 592


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  202 bits (514), Expect = 1e-49
 Identities = 95/201 (47%), Positives = 129/201 (64%), Gaps = 1/201 (0%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP +D F  ++E++GG   MGN N CKTV +G++++R+H G    L +VR+VP L+
Sbjct: 232 TYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLK 291

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQGDIVCGGDMVSQSID 392
           K+LISLG LES G       G LK      + + G    NLY+ QG  V G    + S  
Sbjct: 292 KNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSS 351

Query: 391 EKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTVVH 212
           +K  E T+LWHMRLGH   K + + + +GL+ G K CKL+FCEHC+ GKQ R  FGT +H
Sbjct: 352 KKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIH 411

Query: 211 QTHGMLDYIHSDVWGPSRIVS 149
            T G+LDY+HSDVWGP++  S
Sbjct: 412 NTKGILDYVHSDVWGPAKTPS 432



 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 32/48 (66%), Positives = 37/48 (77%)
 Frame = -1

Query: 144 AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFN 1
           AY+HV E KL  RAKKA+F+G+  GVKGYRLWC E  K IIS DVTF+
Sbjct: 645 AYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEAKKTIISRDVTFD 692


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  201 bits (511), Expect = 2e-49
 Identities = 96/201 (47%), Positives = 135/201 (67%), Gaps = 1/201 (0%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           SYH+CP ++ F TY +V+GG+  M NS+ CK V  G++++R+H G   TL+EVRHVP + 
Sbjct: 286 SYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMT 345

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQGDIVCGGDMVSQSID 392
           K+LISL +L+S G+ +  + G L+V+   +L + G   G LYFLQG  V G   V+ S +
Sbjct: 346 KNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASS-E 404

Query: 391 EKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTVVH 212
             Q + T+LWH+RLGHM  +GM +LS + L+ G K   L+FCEHC+FGK  R+ F   +H
Sbjct: 405 FHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIH 464

Query: 211 QTHGMLDYIHSDVWGPSRIVS 149
           +T G LDYIHSD WGP R+ S
Sbjct: 465 RTKGTLDYIHSDCWGPCRVES 485



 Score = 56.6 bits (135), Expect = 9e-06
 Identities = 25/48 (52%), Positives = 34/48 (70%)
 Frame = -1

Query: 144 AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFN 1
           AY+HV E KL  RAKK +F+GY  GVKG+R+W P   + I+S +V F+
Sbjct: 644 AYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFD 691


>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
          Length = 735

 Score =  158 bits (399), Expect(2) = 2e-47
 Identities = 83/198 (41%), Positives = 117/198 (59%), Gaps = 1/198 (0%)
 Frame = -3

Query: 739 MCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSHGVIT-TLSEVRHVPDLRKSL 563
           MCP K  F  ++E +GG  ++GN+  CK +  GTV+++ +  I   L +VR++P+L+K+L
Sbjct: 1   MCPIKTWFENFKEADGGHVLLGNNKHCKILGTGTVRIKHYDSIERVLEDVRYIPELKKNL 60

Query: 562 ISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQGDIVCGGDMVSQSIDEKQ 383
           ISLG+L+   Y +  E   L+V     + M G     LY L G  V     VS  + E  
Sbjct: 61  ISLGMLDESRYTFKLEPNSLRVARGSLIVMKGTIKIGLYTLIGQTVTS--KVSTMLKEDM 118

Query: 382 VE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTVVHQTH 203
              T+LWH RLGH+S +G+  L  +G++G  K   L FCEHC+FGK  R  F  VVH+T 
Sbjct: 119 GT-TKLWHQRLGHISHRGLQELEKQGVLGNYKLTNLTFCEHCVFGKTTRVKFAKVVHETQ 177

Query: 202 GMLDYIHSDVWGPSRIVS 149
             LDYIHSD+W PSR+ S
Sbjct: 178 NQLDYIHSDLWEPSRVSS 195



 Score = 58.5 bits (140), Expect(2) = 2e-47
 Identities = 31/49 (63%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
 Frame = -1

Query: 141 YFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPE--LNKFIISGDVTFN 1
           Y H K DKL  RA K IFLGYP GVKGY+LW       K IIS DVTFN
Sbjct: 233 YVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKRKCIISRDVTFN 281


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  193 bits (491), Expect = 5e-47
 Identities = 100/203 (49%), Positives = 128/203 (63%), Gaps = 3/203 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L+
Sbjct: 307 TYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLK 366

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M    +  NLY LQG  + G    VS S
Sbjct: 367 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDS 426

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 427 LSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTS 484

Query: 217 VHQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 485 THTTEGILDYVHSDLWGPARKTS 507



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 29/48 (60%), Positives = 33/48 (68%)
 Frame = -1

Query: 144 AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFN 1
           AY HV   KL  RA K IFLGYP  VKGY+LWCPE  K +IS +V F+
Sbjct: 665 AYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVVISRNVVFH 712


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  193 bits (490), Expect = 6e-47
 Identities = 100/203 (49%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L+
Sbjct: 124 TYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLK 183

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M  + +  NLY LQG  + G    VS S
Sbjct: 184 RSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDS 243

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 244 LSNSDA--TNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 301

Query: 217 VHQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 302 THTTEGILDYVHSDLWGPARKTS 324



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 29/48 (60%), Positives = 32/48 (66%)
 Frame = -1

Query: 144 AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFN 1
           AY HV   KL  R  K IFLGYP GVKGY+LWCPE  K +IS  V F+
Sbjct: 483 AYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFH 530


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  193 bits (490), Expect = 6e-47
 Identities = 100/203 (49%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L+
Sbjct: 292 TYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLK 351

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M  + +  NLY LQG  + G    VS S
Sbjct: 352 RSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDS 411

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 412 LSNSDA--TNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 469

Query: 217 VHQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 470 THTTEGILDYVHSDLWGPARKTS 492



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 29/48 (60%), Positives = 32/48 (66%)
 Frame = -1

Query: 144 AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFN 1
           AY HV   KL  R  K IFLGYP GVKGY+LWCPE  K +IS  V F+
Sbjct: 651 AYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFH 698


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  191 bits (485), Expect = 2e-46
 Identities = 98/203 (48%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G I TL +VRH+P+L+
Sbjct: 216 TYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLK 275

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M  + ++ NLY L+G  + G    VS S
Sbjct: 276 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDS 335

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 336 LSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 393

Query: 217 VHQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 394 THTTEGILDYVHSDLWGPARKTS 416



 Score = 60.5 bits (145), Expect = 6e-07
 Identities = 31/63 (49%), Positives = 38/63 (60%)
 Frame = -1

Query: 189 TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
           + +R+FG        AY HV   KL  R  K IFLGY  GVKGY+LWCPE  K +IS +V
Sbjct: 566 SDLRVFGCT------AYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNV 619

Query: 9   TFN 1
            F+
Sbjct: 620 VFH 622


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  191 bits (484), Expect = 3e-46
 Identities = 98/203 (48%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +G VQ++   G I+TLS+VRH+P+L+
Sbjct: 139 TYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLK 198

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G    VS S
Sbjct: 199 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS 258

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 259 LSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 316

Query: 217 VHQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 317 THTTEGILDYVHSDLWGPARKTS 339



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 32/63 (50%), Positives = 39/63 (61%)
 Frame = -1

Query: 189 TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
           + +R+FG        AY HV   KL  RA K IFLGY  GVKGY+LWCPE  K +IS +V
Sbjct: 485 SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVISRNV 538

Query: 9   TFN 1
            F+
Sbjct: 539 VFH 541


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  191 bits (484), Expect = 3e-46
 Identities = 98/203 (48%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +G VQ++   G I+TLS+VRH+P+L+
Sbjct: 139 TYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLK 198

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G    VS S
Sbjct: 199 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS 258

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 259 LSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 316

Query: 217 VHQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 317 THTTEGILDYVHSDLWGPARKTS 339



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 32/63 (50%), Positives = 39/63 (61%)
 Frame = -1

Query: 189 TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
           + +R+FG        AY HV   KL  RA K IFLGY  GVKGY+LWCPE  K +IS +V
Sbjct: 485 SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVISRNV 538

Query: 9   TFN 1
            F+
Sbjct: 539 VFH 541


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  190 bits (482), Expect = 5e-46
 Identities = 98/203 (48%), Positives = 128/203 (63%), Gaps = 3/203 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L+
Sbjct: 273 TYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLK 332

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLIS   L+  GYKY    G LKV     + M  + +  NLY L+G  + G    VS S
Sbjct: 333 RSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS 392

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 393 LSNSDA--TNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTS 450

Query: 217 VHQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 451 THTTEGILDYVHSDLWGPARKTS 473


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  187 bits (475), Expect = 3e-45
 Identities = 97/202 (48%), Positives = 127/202 (62%), Gaps = 3/202 (1%)
 Frame = -3

Query: 745  YHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLRK 569
            YHMCP++D F TY  V  GT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L++
Sbjct: 515  YHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 574

Query: 568  SLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQSI 395
            SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G    VS S+
Sbjct: 575  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 634

Query: 394  DEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTVV 215
                   T LWHMRLGHM+  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T  
Sbjct: 635  SNSDA--TNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTST 692

Query: 214  HQTHGMLDYIHSDVWGPSRIVS 149
            H T G+LDY+HSD+WGP+R  S
Sbjct: 693  HTTEGILDYVHSDLWGPARKTS 714



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 33/63 (52%), Positives = 40/63 (63%)
 Frame = -1

Query: 189  TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
            + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 864  SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 917

Query: 9    TFN 1
             F+
Sbjct: 918  VFH 920


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  187 bits (475), Expect = 3e-45
 Identities = 97/202 (48%), Positives = 127/202 (62%), Gaps = 3/202 (1%)
 Frame = -3

Query: 745 YHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLRK 569
           YHMCP++D F TY  V  GT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L++
Sbjct: 308 YHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 367

Query: 568 SLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQSI 395
           SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G    VS S+
Sbjct: 368 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 427

Query: 394 DEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTVV 215
                  T LWHMRLGHM+  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T  
Sbjct: 428 SNSDA--TNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTST 485

Query: 214 HQTHGMLDYIHSDVWGPSRIVS 149
           H T G+LDY+HSD+WGP+R  S
Sbjct: 486 HTTEGILDYVHSDLWGPARKTS 507



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 33/63 (52%), Positives = 40/63 (63%)
 Frame = -1

Query: 189 TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
           + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 657 SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 710

Query: 9   TFN 1
            F+
Sbjct: 711 VFH 713


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  186 bits (473), Expect = 6e-45
 Identities = 94/200 (47%), Positives = 127/200 (63%), Gaps = 3/200 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GG  +MG++  CK   VGT+Q++   G I TLS+VRH+P L+
Sbjct: 249 TYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLK 308

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           ++LISL  L+  GY+Y    G LKV     + M  + ++ +LY LQG  + G    V+ S
Sbjct: 309 RNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGNVAAVTDS 368

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +         LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 369 LSNSD-----LWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTS 423

Query: 217 VHQTHGMLDYIHSDVWGPSR 158
            H T G+LDY+HSD+WGP+R
Sbjct: 424 THTTEGILDYVHSDLWGPAR 443



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 30/48 (62%), Positives = 33/48 (68%)
 Frame = -1

Query: 144 AYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTFN 1
           AY HV   KL  RA K IFLGYP GVK Y+LWCPE  K +IS +V FN
Sbjct: 605 AYAHVDNGKLEPRAIKCIFLGYPSGVKAYKLWCPETQKVVISRNVIFN 652


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  186 bits (471), Expect = 1e-44
 Identities = 95/199 (47%), Positives = 126/199 (63%), Gaps = 3/199 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  + GGT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L+
Sbjct: 342 TYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLK 401

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G    VS S
Sbjct: 402 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS 461

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS + L+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 462 LSNSDA--TNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTS 519

Query: 217 VHQTHGMLDYIHSDVWGPS 161
            H T G+LDY+HSD+WGP+
Sbjct: 520 THTTEGILDYVHSDLWGPA 538



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 33/63 (52%), Positives = 40/63 (63%)
 Frame = -1

Query: 189 TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
           + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 692 SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 745

Query: 9   TFN 1
            F+
Sbjct: 746 VFH 748


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score =  186 bits (471), Expect = 1e-44
 Identities = 95/199 (47%), Positives = 126/199 (63%), Gaps = 3/199 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  + GGT +MG+   C+   +GTVQ++   G I TLS+VRH+P+L+
Sbjct: 342 TYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLK 401

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGE-RHGNLYFLQGDIVCGG-DMVSQS 398
           +SLISL  L+  GYKY    G LKV     + M  + +  NLY L+G  + G    VS S
Sbjct: 402 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS 461

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           +       T LWHMRLGHMS  G++ LS + L+ G+   KL FCEHCIFGK  R  F T 
Sbjct: 462 LSNSDA--TNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTS 519

Query: 217 VHQTHGMLDYIHSDVWGPS 161
            H T G+LDY+HSD+WGP+
Sbjct: 520 THTTEGILDYVHSDLWGPA 538



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 33/63 (52%), Positives = 40/63 (63%)
 Frame = -1

Query: 189 TSIRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDV 10
           + +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +IS +V
Sbjct: 692 SDLRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNV 745

Query: 9   TFN 1
            F+
Sbjct: 746 VFH 748


>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
           erythrorhizon]
          Length = 244

 Score =  174 bits (442), Expect = 2e-41
 Identities = 90/180 (50%), Positives = 121/180 (67%), Gaps = 1/180 (0%)
 Frame = -3

Query: 682 MMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGF 506
           +MGN +ACKTV VGT++V+ H G I TL++VRH+ DL K+LISL +LE  G K V E G 
Sbjct: 4   LMGNDHACKTVGVGTIRVKMHDGTIITLNDVRHIQDLHKNLISLRLLEKNGCKIVLEDGV 63

Query: 505 LKVYYDGSLKMTGERHGNLYFLQGDIVCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGM 326
           LKV     + M G  HGNLY L G +V G   V     + Q E T +WHMRLGHMS KG+
Sbjct: 64  LKVVRRSLVVMKGVSHGNLYPLVGTMVTGDLAVGVVGHKDQTECTMIWHMRLGHMSEKGL 123

Query: 325 SVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTVVHQTHGMLDYIHSDVWGPSRIVSK 146
           S+LS +GL+   K   ++FCEH ++GK  R  F T  H++ G+LDY+H+D+WGP+++ SK
Sbjct: 124 SLLSGQGLLKNMKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLLDYVHTDLWGPAKVNSK 183


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  173 bits (438), Expect = 7e-41
 Identities = 91/201 (45%), Positives = 119/201 (59%), Gaps = 1/201 (0%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREVNGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDLR 572
           +YHMCP++D F TY  V GGT +MG+   C+   +G VQ++   G I TLS+VRH P+L+
Sbjct: 249 TYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCIRTLSDVRHFPNLK 308

Query: 571 KSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQGDIVCGGDMVSQSID 392
           +SLISL  L+  GYKY    G LK+                  + G++    D +S S  
Sbjct: 309 RSLISLRTLDRKGYKYSGGDGILKL------------------ILGNVAVVSDSLSNS-- 348

Query: 391 EKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTVVH 212
               + T LWHMRLGHMS  G++ LS +GL+ G+   KL FCEHCIFGK  R  F T  H
Sbjct: 349 ----DATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTH 404

Query: 211 QTHGMLDYIHSDVWGPSRIVS 149
            T G LDY+HSD+WGP+R  S
Sbjct: 405 TTEGTLDYVHSDLWGPARKTS 425



 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 32/61 (52%), Positives = 38/61 (62%)
 Frame = -1

Query: 183 IRMFGVPLV*FLRAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISGDVTF 4
           +R+FG        AY HV   KL  RA K IFLGYP GVKGY+LWC E  K +IS +V F
Sbjct: 528 LRVFGCT------AYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCSETKKVVISRNVVF 581

Query: 3   N 1
           +
Sbjct: 582 H 582


>emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]
          Length = 734

 Score =  137 bits (346), Expect(2) = 2e-40
 Identities = 70/139 (50%), Positives = 94/139 (67%)
 Frame = -3

Query: 607 TLSEVRHVPDLRKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHGNLYFLQGDI 428
           TL+++RHVP L+K LISLG L+S    Y A  G L++     + M G++   LY LQG  
Sbjct: 136 TLTDLRHVPKLKKILISLGTLDSNKCTYKAGGGVLRISKGALVVMKGKKINGLYTLQGST 195

Query: 427 VCGGDMVSQSIDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFG 248
           + G  +VS S  E  +E TRLWHM LGHMS KG+++LS +GL+ G+KT +L+FCEHC+FG
Sbjct: 196 IIGAIVVSTS--ESIIETTRLWHMXLGHMSEKGLTILSKRGLLDGQKTGELNFCEHCVFG 253

Query: 247 KQCRSSFGTVVHQTHGMLD 191
           KQCR  F   VH+T G L+
Sbjct: 254 KQCRVKFSAGVHRTKGKLE 272



 Score = 55.5 bits (132), Expect(2) = 2e-40
 Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
 Frame = -1

Query: 135 HVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPE--LNKFIISGDVTFN 1
           H  + KL  RA+K IFLGY  GVK YRLWCP+   +KF+I  D+TFN
Sbjct: 265 HRTKGKLEPRARKCIFLGYADGVKWYRLWCPDSKFSKFLIIKDITFN 311


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  171 bits (434), Expect = 2e-40
 Identities = 86/200 (43%), Positives = 131/200 (65%), Gaps = 3/200 (1%)
 Frame = -3

Query: 748 SYHMCPSKDCFNTYREV-NGGTFMMGNSNACKTV*VGTVQVRSH-GVITTLSEVRHVPDL 575
           S+H+C ++D F++Y+ V NG    MG+ N  + V +G+VQ+++H G+  TL +VRH+P +
Sbjct: 299 SFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGM 358

Query: 574 RKSLISLGVLESLGYKYVAEYGFLKVYYDGSLKMTGERHG-NLYFLQGDIVCGGDMVSQS 398
            ++LISL  L++ GYKY +  G +KV     + M G+ +  NLY L+G  +  G + + +
Sbjct: 359 ARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTL-HGSVTAAA 417

Query: 397 IDEKQVE*TRLWHMRLGHMS*KGMSVLSSKGLIGGEKTCKLDFCEHCIFGKQCRSSFGTV 218
           + + +   T LWHMRLGHMS  GM+ L  + L+ G    K+ FCEHC+FGK  R  F T 
Sbjct: 418 VSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTS 477

Query: 217 VHQTHGMLDYIHSDVWGPSR 158
           VH+T G+LDY+H+D+WGPSR
Sbjct: 478 VHRTKGILDYVHTDLWGPSR 497