BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00054935
         (558 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest...    57   4e-06
gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, ...    55   9e-06
emb|CDJ33287.1| hypothetical protein EMH_0081540 [Eimeria mitis]       55   9e-06

>gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
            vacuolata]
          Length = 1746

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
 Frame = +3

Query: 42   PPPLSYDASSEAFVPAAP--HNVAPSYAATPVSYDQSSQVSVPEASGFGPAYWAAVAHGS 215
            P   +Y  +S A+ P +P     +P+Y+ T  +Y  +S +  P +    PA    V++  
Sbjct: 1622 PTSPAYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSP 1681

Query: 216  SNQVYDASSQAYVPAVPH--GIAPCYAP------PPAVSYDPSSQVYVPGGSALGPA 362
            S+  Y  SS  Y P+ PH    +P Y+P      P +  Y PSS  Y P   A  P+
Sbjct: 1682 SSPHYSPSSPQYSPSSPHYSPSSPHYSPSSPQYSPSSPQYSPSSPAYSPSSPAYSPS 1738


>gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
            anathema]
          Length = 1690

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
 Frame = +3

Query: 24   ASAHAVPPPLSYDASSEAFVPAAP--HNVAPSYAATPVSYDQSSQVSVPEASGFGPAYWA 197
            AS    P   +Y  +S A+ PA+P     +P+Y+    +Y  +S    P +  + PA   
Sbjct: 1537 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA--- 1593

Query: 198  AVAHGSSNQVYDASSQAYVPAVP--HGIAPCYAP------PPAVSYDPSSQVYVPGGSAL 353
            + A+  ++  Y  +S AY PA P     +P Y+P      P + +Y P+S  Y P   A 
Sbjct: 1594 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1653

Query: 354  GPA 362
            GPA
Sbjct: 1654 GPA 1656


>emb|CDJ33287.1| hypothetical protein EMH_0081540 [Eimeria mitis]
          Length = 231

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
 Frame = -1

Query: 384 HELLVPNKLDRVLIPQEHKLEMMDHMILREEEHSMVQYHVEQQEHKLEMMHHKPG*NSHE 205
           H LL   K   +   Q+ K     H+  +++ H ++Q   ++Q H L+ + H      H 
Sbjct: 103 HRLLQQQKQHHLQQQQQAKHH---HLQQQQKHHHLLQQQQQKQHHLLQQVKH------HH 153

Query: 204 LLLPNKRDQILMLQEQ----KLEMIDHMILE*QHMMVQHYAVRQEQKLQMMHHMIMVEEQ 37
           LL   K+  +L  Q+Q    + +   H +L+ Q    QH+ ++Q+Q+ Q  HH++    Q
Sbjct: 154 LLQQQKQHHLLQQQKQHHRLQQQQKQHHLLQQQQQQKQHHLLQQQQQHQKQHHLL----Q 209

Query: 36  HELMHHTLMCQK 1
            +  HH L+ QK
Sbjct: 210 QQAKHHRLLQQK 221