BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00054659
         (746 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A...    99   4e-21
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...   106   8e-21
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...   103   8e-20
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    90   4e-19
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   100   5e-19
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   100   9e-19
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...    98   3e-18
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    91   7e-17
ref|XP_004305739.1| PREDICTED: uncharacterized protein LOC101306...    93   9e-17
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    89   1e-15
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    89   2e-15
ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein A...    88   4e-15
ref|XP_007012887.1| Uncharacterized protein TCM_037692 [Theobrom...    86   1e-14
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    86   1e-14
ref|XP_007027495.1| Uncharacterized protein TCM_022315 [Theobrom...    86   2e-14
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    86   2e-14
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    86   2e-14
ref|XP_007026458.1| Uncharacterized protein TCM_021522 [Theobrom...    85   2e-14
gb|ABA99487.1| retrotransposon protein, putative, unclassified [...    85   2e-14
gb|ABA95227.1| retrotransposon protein, putative, unclassified [...    85   2e-14

>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 872

 Score = 98.6 bits (244), Expect(2) = 4e-21
 Identities = 48/125 (38%), Positives = 72/125 (57%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL   +  G  +  H + +V+++R  L+ WVG  L    RL LIKSVI S  +++   Y+
Sbjct: 255 YLGAPIFHGKPRVAHFQAIVDKVRLKLSSWVGSFLSMAGRLQLIKSVIYSMFVYTFQVYE 314

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
           WP  ++R  E   RNFLW+GD       +V +   C P  EGGLGL +L V+N +L++K 
Sbjct: 315 WPVSLLRKVERWCRNFLWSGDIDKRGIPLVSWTSCCAPIDEGGLGLKKLDVLNSSLLLKR 374

Query: 384 WWKIW 370
            W+I+
Sbjct: 375 CWEIF 379



 Score = 29.6 bits (65), Expect(2) = 4e-21
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -1

Query: 305 SSIFPSIGWVAAEVDQNIKCLVGDSVNTSLSFDNWCAELSIAELMGIPSSARSEFSSRVC 126
           SSI+P +      V  N + LVG     S   DN+     + E  G    A ++ SS V 
Sbjct: 402 SSIWPGVRKFWGLVQNNTRWLVGTGDKISFWRDNFLGR-PLIEFFG-NHGALNDNSSLVS 459

Query: 125 DMISYNTWSFPP 90
           D I   +W  PP
Sbjct: 460 DYIDNGSWVLPP 471


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score =  106 bits (265), Expect = 8e-21
 Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL V    GA K   ++  ++ +      W GR LF   RL LI SVI +  +H+   Y+
Sbjct: 137 YLGVLNFQGAPKAKWLKATMDNILVKFDNWKGRTLFMAGRLALINSVIFASLLHTFMMYR 196

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
           WPS +++  E AIRNFLWTG     +   V +   C P SEGG+GL RL V+N+ ++ ++
Sbjct: 197 WPSSLLKSIEKAIRNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVLNRTMLCRI 256

Query: 384 WWKIWA------QFLHAKYLKVNG 331
            WK ++      +FL ++YL  +G
Sbjct: 257 AWKFYSNDSFVYRFLRSRYLVASG 280


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score =  103 bits (256), Expect = 8e-20
 Identities = 47/125 (37%), Positives = 75/125 (60%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL V +  G  K  H++P+V+++   L+ W   LL    R+ ++KSVI S   HS+  Y 
Sbjct: 37  YLGVPIFKGKPKVIHLQPIVDKIIAKLSTWKASLLSIAGRVQMVKSVIQSMLTHSITVYN 96

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
           WP+ +++D E +I+NF+W+GD+   +   V + KLC PF +GGL +  L  +N A  +KL
Sbjct: 97  WPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWKKLCRPFDQGGLRIRSLIQLNSASNLKL 156

Query: 384 WWKIW 370
            W I+
Sbjct: 157 CWNIY 161


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 90.1 bits (222), Expect(2) = 4e-19
 Identities = 44/151 (29%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL   +  G +K  + + +V+ ++   A W   LL    R+ L+KS+I    ++S   Y 
Sbjct: 224 YLGCPIFKGKLKGIYFQSIVDRIKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYM 283

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
           WP R++   ++ I+NF+W+GD  T +   V +  +C P++ GGL +    ++N++LI+ L
Sbjct: 284 WPRRLLHQLDSWIKNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLL 343

Query: 384 WWKI------WAQFLHAKYLKVNGDVIDYHF 310
            W+       WA  +H ++LK +G  + ++F
Sbjct: 344 AWQFSTADSQWAALMHHRFLK-HGTPLQHYF 373



 Score = 31.6 bits (70), Expect(2) = 4e-19
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -1

Query: 329 T*LTTIFRSSIFPSIGWVAAEVDQNIKCLVGDSVNTSLSFDNWCAELSIAELMGIPSSAR 150
           T L   F SS++  I    + +  N   +VG   N +L  DNW   + + + + I  +  
Sbjct: 367 TPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWLG-IRLVDSLNISPTLH 425

Query: 149 SEFSSRVCDMISYNTWSFP 93
           ++F + V D+I     S P
Sbjct: 426 TKFRASVADVIVNGALSLP 444


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  100 bits (249), Expect = 5e-19
 Identities = 43/124 (34%), Positives = 73/124 (58%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL   +  G  K  H +P+ ++++  LA W   LL    R+ L+KSV+ S  +H+M+ Y 
Sbjct: 496 YLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYS 555

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
           WP +I+++ E  I+NF+W+GD    +   V + K+C  + EGGLG+  L  +N+A  +K+
Sbjct: 556 WPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKI 615

Query: 384 WWKI 373
            W +
Sbjct: 616 CWNL 619


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 99.8 bits (247), Expect = 9e-19
 Identities = 47/122 (38%), Positives = 72/122 (59%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL V +  G  K   ++P+V++++  L+ W   +L    R+ LIKSV  S  IH++  Y 
Sbjct: 402 YLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIHTITIYD 461

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
           WPS ++++ ET  RNF+W+GD    +   V + KLC P S+GGLG+  L  +N A  +KL
Sbjct: 462 WPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGIRSLSQLNAAGNLKL 521

Query: 384 WW 379
            W
Sbjct: 522 CW 523


>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
          Length = 947

 Score = 98.2 bits (243), Expect = 3e-18
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL + ++   +  D    V+E +   LAGW GR L F  RL L KSV++  PIH+M+   
Sbjct: 427 YLGMPILQRRINKDTFGEVLERVSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTIS 486

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
            P   +   +   R FL    ++  +  +V +D++C P SEGGLG+   K MNKAL+ K+
Sbjct: 487 LPQSTLEGLDKLARVFLLGSSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKV 546

Query: 384 WWK-------IWAQFLHAKY 346
            W+       +WA+ L +KY
Sbjct: 547 GWRLINDRYSLWARILRSKY 566


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 90.9 bits (224), Expect(2) = 7e-17
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 7/140 (5%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL + ++   +  D    ++E+L   LAGW GR L    R+ L K+V++S P+H+M+   
Sbjct: 275 YLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIA 334

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
            P   +   +   R+FLW       +  ++ + ++C P SEGGLG+ + + MNKAL+ K+
Sbjct: 335 LPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKV 394

Query: 384 WWK-------IWAQFLHAKY 346
            W+       +WA+ +   Y
Sbjct: 395 GWRLIQDYHSLWARIMRCNY 414



 Score = 23.1 bits (48), Expect(2) = 7e-17
 Identities = 11/46 (23%), Positives = 17/46 (36%)
 Frame = -1

Query: 308 RSSIFPSIGWVAAEVDQNIKCLVGDSVNTSLSFDNWCAELSIAELM 171
           R  + P + WV           +GD        D W   + +AEL+
Sbjct: 443 REVVIPGLSWV-----------IGDGREILFWMDKWLTNIPLAELL 477


>ref|XP_004305739.1| PREDICTED: uncharacterized protein LOC101306660 [Fragaria vesca
           subsp. vesca]
          Length = 330

 Score = 93.2 bits (230), Expect = 9e-17
 Identities = 44/143 (30%), Positives = 73/143 (51%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL V +  G  K  + + + + +R+ ++ W G  L    R+ L+ SV+ S   HS   Y 
Sbjct: 120 YLGVPIFVGRPKRVYFQVLTDRIRNAMSNWKGNSLSMAGRVTLVNSVVISMLSHSFTIYA 179

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
           WP  +++     IRNF+WTG+      + V + K C P  EGGLG+  +  +N+A ++K 
Sbjct: 180 WPKTVLQQVRNWIRNFIWTGNVSCRAYYPVAWKKCCAPLKEGGLGVRNIMALNQAFLLKK 239

Query: 384 WWKIWAQFLHAKYLKVNGDVIDY 316
           +W    +   A  +  NG  ID+
Sbjct: 240 FWDFLTKSTTAAVVG-NGHSIDF 261


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 89.4 bits (220), Expect = 1e-15
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL + ++   +  D    V+E +   L+GW  R L    R+ L K+V+ S PIH+M+   
Sbjct: 548 YLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSIL 607

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
            P+ ++   +   RNFLW    +  +  ++ + K+C P + GGLGL   K MN+AL+ K+
Sbjct: 608 LPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKV 667

Query: 384 WWK-------IWAQFLHAKY 346
            W+       +WA+ L  KY
Sbjct: 668 GWRLLNDKVSLWARVLRRKY 687


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
 Frame = -3

Query: 744  YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
            YL V L S  +     +P+++++     GWV  LL +  RL L+K+++ S   +    + 
Sbjct: 759  YLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFP 818

Query: 564  WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
             P ++I+  ET  R FLWTG   TS    V +D L  P S GGL +T + + NKA I+KL
Sbjct: 819  LPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKL 878

Query: 384  WW-------KIWAQFLHAKYLK 340
             W       K+W ++++A Y+K
Sbjct: 879  LWAITFKQDKLWVRWVNAYYIK 900


>ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 885

 Score = 87.8 bits (216), Expect = 4e-15
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL   +  G     H   +++++   ++ W  RLL F  R VLI +V+ S PI+ ++   
Sbjct: 244 YLGCPIFYGRKNRAHFESLIKKVMKRISSWQNRLLSFGGRYVLIANVLQSLPIYVVSAMN 303

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
            P+ +I         F W   +       VG+DK+C P  EGG+G   L  ++KAL  KL
Sbjct: 304 PPACVITQLHRIFAKFFWANTAGAKNKHWVGWDKMCYPRGEGGMGWRSLHDISKALFAKL 363

Query: 384 WWK-------IWAQFLHAKYLKVNGDVI 322
           WW        +WA F+  KY K +  +I
Sbjct: 364 WWNFRTSTNTLWASFMWNKYCKKHHPII 391


>ref|XP_007012887.1| Uncharacterized protein TCM_037692 [Theobroma cacao]
           gi|508783250|gb|EOY30506.1| Uncharacterized protein
           TCM_037692 [Theobroma cacao]
          Length = 475

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL V L+ G  K    + + E++ + L+ W    L F  RL L+KS++   P ++M    
Sbjct: 270 YLGVPLLRGRKKYSLFKYLEEKICNRLSSWKASALSFAGRLTLVKSILLYIPSYAMQTVA 329

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
            P +     E   RNFLW GDSK  +   + +  +C P  EGGLG+  ++ MN A ++K 
Sbjct: 330 IPEKTREKIEMHCRNFLWDGDSKARKIHAMKWKNMCRPKEEGGLGIRCMRKMNNAFLLKA 389

Query: 384 WWK-------IWAQFLHAKY 346
            WK       +W +   +KY
Sbjct: 390 CWKLISTPASLWVKVARSKY 409


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
 Frame = -3

Query: 714 VKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYKWPSRIIRDCE 535
           +  D    ++E +   ++GW  + L F  RL L K+V++S P+HSM+    P  I+   +
Sbjct: 8   INKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLD 67

Query: 534 TAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKLWWK------- 376
              R FLW   ++  +  +V + K+C P  EGGLG+   K MN+ALI K+ W+       
Sbjct: 68  QLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNS 127

Query: 375 IWAQFLHAKY 346
           +W   L  KY
Sbjct: 128 LWTLVLQKKY 137


>ref|XP_007027495.1| Uncharacterized protein TCM_022315 [Theobroma cacao]
           gi|508716100|gb|EOY07997.1| Uncharacterized protein
           TCM_022315 [Theobroma cacao]
          Length = 667

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL + L +        +P++E+    LAGW  + L    R+ L++SV++S PI  M+ ++
Sbjct: 201 YLGLPLKANPNSIQTWKPIIEKFETRLAGWKAKTLSIGGRVALLRSVLSSLPIFYMSIFQ 260

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
            P R+I++ E   R FLW G  K  +   + + K+C     GGLG+  ++V N+AL+ K 
Sbjct: 261 IPKRVIKELEKIERRFLWCGSEKKQKIHYIEWSKVCNYKENGGLGIINMEVKNRALLNKW 320

Query: 384 WWK-------IWAQFLHAKYLKVNGDVID 319
            W+       +W + +     KV G++I+
Sbjct: 321 LWRYGSEMGSLWREVI---VKKVGGNLIN 346


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
 Frame = -3

Query: 744 YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
           YL   +  G     H   ++ ++++ L+GW  + L    R+ L K VI+S P + M   K
Sbjct: 180 YLGANITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSIPYYHMQYAK 239

Query: 564 WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
            P  I  + E   R F+W   ++  +  +V +D  C P   GGLG  R   MN+A +MK+
Sbjct: 240 IPKTICDEIEKIQRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLGFKRPHHMNEAFLMKM 299

Query: 384 WW-------KIWAQFLHAKYLKVNGDVIDYHFSIVYFS*YW 283
            W       K+W + L++KY + N D+ +   S  Y S  W
Sbjct: 300 LWNLIKQPDKLWCRVLYSKYGR-NNDLNNNISSQPYDSPLW 339


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
 Frame = -3

Query: 744  YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
            YL + ++   +  +    V+E +   LAGW GR L    R+ L K+V++S P+H M+   
Sbjct: 613  YLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAIL 672

Query: 564  WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
             P   +   +   R FLW    +  +  ++ + K+C P +EGG+GL   + MNKAL+ K+
Sbjct: 673  LPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKV 732

Query: 384  WWK-------IWAQFLHAKYLKVNG 331
             W+       +WA+ +  KY KV G
Sbjct: 733  GWRLLQDKESLWARVVRKKY-KVGG 756


>ref|XP_007026458.1| Uncharacterized protein TCM_021522 [Theobroma cacao]
            gi|508715063|gb|EOY06960.1| Uncharacterized protein
            TCM_021522 [Theobroma cacao]
          Length = 3503

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
 Frame = -3

Query: 744  YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
            YL   L  G  K      +V ++ + + GW  ++L    R+ L++S ++S PI+ +   K
Sbjct: 2884 YLGAPLFKGHKKVILFNDLVAKIEERITGWENKILSPGGRITLLRSTLSSLPIYLLQVLK 2943

Query: 564  WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
             P  ++        NFLW G + + R     + K+  P +EGGL +  L+ + KA  MKL
Sbjct: 2944 PPIIVLERINRLFNNFLWGGSASSKRIHWASWGKIALPIAEGGLDIRNLEDVFKAFSMKL 3003

Query: 384  WWK------IWAQFLHAKY 346
            WW+      +W QF+ AKY
Sbjct: 3004 WWRFRTTNSLWMQFMRAKY 3022



 Score = 80.1 bits (196), Expect = 8e-13
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
 Frame = -3

Query: 744  YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
            YL   L  G  K      ++ ++RD ++GW  ++L    R+ L++SV++S P++ +   K
Sbjct: 1090 YLGAPLHKGQKKVILFDSLISKIRDRISGWENKILSPGGRITLLRSVLSSQPMYLLQVLK 1149

Query: 564  WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
             P  +I   E    +FLW       +     + K+  P SEGGL +  L+ + +A  +KL
Sbjct: 1150 PPVTVIEKIERLFNSFLWGDSCDGKKLHWTAWSKITFPVSEGGLDIRNLRDVFEAFSLKL 1209

Query: 384  WWK------IWAQFLHAKY 346
            WW+      +W +FL  KY
Sbjct: 1210 WWRFQTCNSLWTRFLRTKY 1228


>gb|ABA99487.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1627

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
 Frame = -3

Query: 744  YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
            YL V +    + N   +PV E++   L  W G+LL    R+ LI S I+S P++ M+ Y 
Sbjct: 1184 YLGVPINQVRIHNKDWKPVEEKIEKKLGCWQGKLLAIGGRVALINSSISSVPLYMMSLYS 1243

Query: 564  WPSRIIRDCETAIRNFLWTGDSKTSRCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIMKL 385
             P  +    +   R FLW  D    +  +V +  +C P  +GGLG+  L VMNKAL+ K 
Sbjct: 1244 LPCGVREKIDFYRRRFLWQEDQGIRKYHLVKWLVICLPKDQGGLGILDLDVMNKALLGKW 1303

Query: 384  WWK------IWAQFLHAKYLK 340
             W       +W   L  KYLK
Sbjct: 1304 LWNLENTEGLWQDMLRNKYLK 1324


>gb|ABA95227.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 2776

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 42/128 (32%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
 Frame = -3

Query: 744  YLDVQLMSGAVKNDHIRPVVEELRDTLAGWVGRLLFFQARLVLIKSVIASYPIHSMAEYK 565
            YL + L    + N+ ++P+V ++   L GW   LL    RL+L+ +V++S P+++M+ +K
Sbjct: 2256 YLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILVNAVLSSVPVYAMSAFK 2315

Query: 564  WPSRIIRDCETAIRNFLWTGDSKTS--RCFVVGFDKLCCPFSEGGLGLTRLKVMNKALIM 391
             P ++I   +   R F WTGD   S  +C +V +D++C    +GGLG+  LK  N+AL++
Sbjct: 2316 LPPKVIEAIDKRRRAFFWTGDDTCSGAKC-LVAWDEVCTAKEKGGLGIKSLKTQNEALLL 2374

Query: 390  KLWWKIWA 367
            K  + +++
Sbjct: 2375 KRLFNLFS 2382