BLASTX nr result

ID: Papaver27_contig00052419 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00052419
         (1142 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004298458.1| PREDICTED: putative fasciclin-like arabinoga...    58   1e-06
ref|XP_002280452.1| PREDICTED: putative fasciclin-like arabinoga...    58   2e-06

>ref|XP_004298458.1| PREDICTED: putative fasciclin-like arabinogalactan protein 20-like
           [Fragaria vesca subsp. vesca]
          Length = 338

 Score = 58.2 bits (139), Expect(2) = 1e-06
 Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
 Frame = +1

Query: 196 YQKAQSSLDLQL---PDPTRKLTVFAPTDA-----VLDPFWMNFSSSVFHRHILPCKLTA 351
           Y    S LDLQL    +P   LTVFAP D      +LDP       SVF RH++PC+L  
Sbjct: 202 YTVMASLLDLQLMGFKNPPTSLTVFAPVDQSVENPLLDP-------SVFLRHVVPCRLAW 254

Query: 352 SDMLNLVLYREITVPPLY-EGFTGHSTVVGHILLVNDVPLLYPDI 483
           SD++NL    E T  P Y +GFT   +  G +LL+N  P+ + ++
Sbjct: 255 SDLVNLT---EGTALPTYLDGFTIRISRSGDVLLLNGAPVYFANM 296



 Score = 21.9 bits (45), Expect(2) = 1e-06
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 483 SIAVHGIQQILTLP 524
           S+ VHG+Q+ L +P
Sbjct: 301 SVVVHGLQESLVMP 314


>ref|XP_002280452.1| PREDICTED: putative fasciclin-like arabinogalactan protein 20-like
           [Vitis vinifera]
          Length = 339

 Score = 58.2 bits (139), Expect(2) = 2e-06
 Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
 Frame = +1

Query: 211 SSLDLQL---PDPTRKLTVFAPTDAVLDPFWMNFS---SSVFHRHILPCKLTASDMLNLV 372
           S LDLQL    D T K+TV AP D V+     NFS   SS+F RH+LPCK++ SD++N  
Sbjct: 199 SFLDLQLLGFRDGT-KMTVLAPADEVMMDRVGNFSDISSSIFLRHVLPCKVSWSDLVN-- 255

Query: 373 LYREITVPPLYEGFTGHSTVVGHILLVNDVPLLYPDI 483
                 +P   EGFT + T  G  L +N+V + +PD+
Sbjct: 256 FDDGSMLPTSLEGFTINITRSGDTLKLNEVSVAFPDM 292



 Score = 21.6 bits (44), Expect(2) = 2e-06
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 486 IAVHGIQQILTLPIG 530
           + VHG+ ++LTL +G
Sbjct: 298 LVVHGLGEVLTLLVG 312


Top