BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00051737
         (376 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit famil...    56   5e-16
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun...    60   1e-15
ref|XP_007152860.1| hypothetical protein PHAVU_004G166200g [Phas...    59   2e-14
ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, I...    60   7e-14
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps...    60   2e-13
ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases I, I...    55   2e-13
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...    59   3e-13
gb|AFK41303.1| unknown [Medicago truncatula]                           59   3e-13
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...    60   8e-13
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ...    60   2e-12
gb|EPS66115.1| hypothetical protein M569_08662, partial [Genlise...    56   2e-12
ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutr...    60   1e-11
ref|XP_001754558.1| predicted protein [Physcomitrella patens] gi...    53   6e-11
ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, I...    49   2e-10
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...    49   4e-10
ref|XP_006355758.1| PREDICTED: DNA-directed RNA polymerases II a...    46   4e-10
ref|XP_001758465.1| predicted protein [Physcomitrella patens] gi...    52   6e-10
ref|XP_004240216.1| PREDICTED: DNA-directed RNA polymerases I, I...    44   3e-09
gb|EYU23925.1| hypothetical protein MIMGU_mgv1a013961mg [Mimulus...    54   6e-09
ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, I...    43   4e-08

>ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao] gi|508783467|gb|EOY30723.1| Eukaryotic
           rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 206

 Score = 56.2 bits (134), Expect(3) = 5e-16
 Identities = 27/39 (69%), Positives = 34/39 (87%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTCI++ISS+F+LE   ++ELLVN+KEH LVPEH
Sbjct: 106 LTPFARTCINEISSKFHLEVFQESELLVNVKEHSLVPEH 144



 Score = 50.8 bits (120), Expect(3) = 5e-16
 Identities = 35/78 (44%), Positives = 46/78 (58%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRGY VG+FEI   KAQ +SK+G  +KREDL I  +T     S  I +F          K
Sbjct: 24  DRGYFVGDFEITMTKAQFISKYGENMKREDLVIN-KTKRNDNSDQIYVF-----FPDEAK 77

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMKT  NRM +++V
Sbjct: 78  VGVKTMKTYTNRMKSENV 95



 Score = 22.3 bits (46), Expect(3) = 5e-16
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RAVLVVQQN    ++
Sbjct: 95  VFRAVLVVQQNLTPFAR 111


>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
           notabilis]
          Length = 253

 Score = 60.1 bits (144), Expect(3) = 1e-15
 Identities = 30/39 (76%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTCIS+IS++F+LE   +AELLVNIKEHVLVPEH
Sbjct: 106 LTPFARTCISEISTKFHLEVFQEAELLVNIKEHVLVPEH 144



 Score = 47.4 bits (111), Expect(3) = 1e-15
 Identities = 30/78 (38%), Positives = 43/78 (55%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DR YLVG+FE+   K Q  +K+G  +KREDL I           + + F         +K
Sbjct: 24  DRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSRRNDSPDQIYVFF------PEEQK 77

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMKT INRM +++V
Sbjct: 78  VGVKTMKTYINRMKSENV 95



 Score = 20.8 bits (42), Expect(3) = 1e-15
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 136 RAVLVVQQNFNSLSQ 92
           RAVLVVQQN    ++
Sbjct: 97  RAVLVVQQNLTPFAR 111


>ref|XP_007152860.1| hypothetical protein PHAVU_004G166200g [Phaseolus vulgaris]
           gi|561026169|gb|ESW24854.1| hypothetical protein
           PHAVU_004G166200g [Phaseolus vulgaris]
          Length = 207

 Score = 58.5 bits (140), Expect(2) = 2e-14
 Identities = 29/39 (74%), Positives = 34/39 (87%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTC+S+ISS+F+LE   +AELLVNIKEH LVPEH
Sbjct: 107 LTPFARTCVSEISSKFHLEVFQEAELLVNIKEHELVPEH 145



 Score = 45.8 bits (107), Expect(2) = 2e-14
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKF-GYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINR 195
           DRGYLVG+FEI   K +  S   G  +KREDLD+           + + F          
Sbjct: 24  DRGYLVGDFEINMSKHEFKSSHGGENMKREDLDLNKSKKDNSSDQIYVFF------PDEA 77

Query: 194 KLELKTMKTSINRM*NDDV 138
           K+ +KTMKT  NRM ND+V
Sbjct: 78  KVGVKTMKTYTNRMNNDNV 96


>ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score = 59.7 bits (143), Expect(2) = 7e-14
 Identities = 29/39 (74%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTCI+++SS+F+LE   +AELLVNIKEHVLVPEH
Sbjct: 106 LTPFARTCIAEVSSKFHLEVFQEAELLVNIKEHVLVPEH 144



 Score = 42.7 bits (99), Expect(2) = 7e-14
 Identities = 28/78 (35%), Positives = 41/78 (52%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DR YLVG+FE+   K +   K+G  +KREDL I           + + F   +K+ +   
Sbjct: 24  DRNYLVGDFEVNMSKHEFKEKYGENMKREDLVINKTKKDKPSDQIYVFFPEEVKVGV--- 80

Query: 191 LELKTMKTSINRM*NDDV 138
              KTMKT  NRM +++V
Sbjct: 81  ---KTMKTYTNRMNSENV 95


>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
           gi|482567281|gb|EOA31470.1| hypothetical protein
           CARUB_v10014656mg [Capsella rubella]
          Length = 205

 Score = 60.5 bits (145), Expect(3) = 2e-13
 Identities = 30/39 (76%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTCIS+ISS+F+LE   +AE+LVNIKEHVLVPEH
Sbjct: 105 LTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEH 143



 Score = 36.6 bits (83), Expect(3) = 2e-13
 Identities = 27/78 (34%), Positives = 41/78 (52%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRGY + + EI   K Q + K+G  +KREDL + ++      S  + IF          K
Sbjct: 23  DRGYFIADSEITITKQQFIRKYGDNMKREDL-VTLKAKRNDNSDQLYIF-----FPDEAK 76

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMK   NRM +++V
Sbjct: 77  VGVKTMKMYTNRMKSENV 94



 Score = 23.5 bits (49), Expect(3) = 2e-13
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           +YRA+LVVQQN    ++
Sbjct: 94  VYRAILVVQQNLTPFAR 110


>ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score = 54.7 bits (130), Expect(2) = 2e-13
 Identities = 27/39 (69%), Positives = 34/39 (87%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ART +++ISS+F+LE   +AELLVNIK+HVLVPEH
Sbjct: 106 LTPFARTSVAEISSKFHLEVFQEAELLVNIKDHVLVPEH 144



 Score = 46.2 bits (108), Expect(2) = 2e-13
 Identities = 31/78 (39%), Positives = 42/78 (53%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DR YLVG+FEI   K Q   K+G  +KREDL I           + + F   +K+ +   
Sbjct: 24  DRNYLVGDFEINMSKHQFKEKYGENMKREDLVINKTKKDKPSDQIYVFFPEEVKVGV--- 80

Query: 191 LELKTMKTSINRM*NDDV 138
              KTMKT INRM +++V
Sbjct: 81  ---KTMKTYINRMNSENV 95


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|355511987|gb|AES93610.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 [Medicago truncatula]
          Length = 410

 Score = 58.5 bits (140), Expect(2) = 3e-13
 Identities = 28/39 (71%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP A+TC+S+I+S+F+LE   +AELLVNIKEHVLVPEH
Sbjct: 310 LTPFAKTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEH 348



 Score = 42.0 bits (97), Expect(2) = 3e-13
 Identities = 31/78 (39%), Positives = 42/78 (53%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DR YLVG+FE+   K     K+G  +KREDL I  +T     S  I +F          K
Sbjct: 228 DRNYLVGDFELNMSKHDFKDKYGENMKREDLVIN-KTKKDKPSDQIYVF-----FPEEAK 281

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMKT  NRM +++V
Sbjct: 282 VGVKTMKTYTNRMNSENV 299


>gb|AFK41303.1| unknown [Medicago truncatula]
          Length = 206

 Score = 58.5 bits (140), Expect(2) = 3e-13
 Identities = 28/39 (71%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP A+TC+S+I+S+F+LE   +AELLVNIKEHVLVPEH
Sbjct: 106 LTPFAKTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEH 144



 Score = 42.0 bits (97), Expect(2) = 3e-13
 Identities = 31/78 (39%), Positives = 42/78 (53%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DR YLVG+FE+   K     K+G  +KREDL I  +T     S  I +F          K
Sbjct: 24  DRNYLVGDFELNMSKHDFKDKYGENMKREDLVIN-KTKKDKPSDQIYVF-----FPEEAK 77

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMKT  NRM +++V
Sbjct: 78  VGVKTMKTYTNRMNSENV 95


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score = 60.5 bits (145), Expect(3) = 8e-13
 Identities = 30/39 (76%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTCIS+ISS+F+LE   +AE+LVNIKEHVLVPEH
Sbjct: 105 LTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEH 143



 Score = 34.7 bits (78), Expect(3) = 8e-13
 Identities = 26/78 (33%), Positives = 40/78 (51%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRGY + + E+   K Q + K G  +KREDL + ++      S  + IF          K
Sbjct: 23  DRGYFIADSELTMTKQQFIRKHGDNMKREDL-VTLKVKRNDNSDQLYIF-----FPDEAK 76

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMK   NRM +++V
Sbjct: 77  VGVKTMKMYTNRMKSENV 94



 Score = 23.5 bits (49), Expect(3) = 8e-13
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           +YRA+LVVQQN    ++
Sbjct: 94  VYRAILVVQQNLTPFAR 110


>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
           gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and IV subunit 5A;
           Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
           II subunit E; AltName: Full=RNA polymerase I, II and III
           24.3 kDa subunit; Short=AtRPB24.3
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           NRPB5 [Arabidopsis thaliana]
          Length = 205

 Score = 60.5 bits (145), Expect(3) = 2e-12
 Identities = 30/39 (76%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTCIS+ISS+F+LE   +AE+LVNIKEHVLVPEH
Sbjct: 105 LTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEH 143



 Score = 34.7 bits (78), Expect(3) = 2e-12
 Identities = 26/78 (33%), Positives = 40/78 (51%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRGY + + E+   K Q + K G  +KREDL + ++      S  + IF          K
Sbjct: 23  DRGYFIADSELTMTKQQFIRKHGDNMKREDL-VTLKAKRNDNSDQLYIF-----FPDEAK 76

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMK   NRM +++V
Sbjct: 77  VGVKTMKMYTNRMKSENV 94



 Score = 21.9 bits (45), Expect(3) = 2e-12
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RA+LVVQQN    ++
Sbjct: 94  VFRAILVVQQNLTPFAR 110


>gb|EPS66115.1| hypothetical protein M569_08662, partial [Genlisea aurea]
          Length = 208

 Score = 56.2 bits (134), Expect(2) = 2e-12
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
 Frame = -2

Query: 198 PKVGVKDYEDFHQQDVK**CTGQFWLFNRILTPLARTCISQ-ISSEFYLE---KAELLVN 31
           PKVGVK  + +  +  +        +  + LTP+AR+CI++ ISS+F+LE   +AELL+N
Sbjct: 77  PKVGVKPIKAYTNKMKEEGIHKAILVVQQNLTPIARSCITETISSKFHLEVFQEAELLIN 136

Query: 30  IKEHVLVPEH 1
           IK+HVLVPEH
Sbjct: 137 IKDHVLVPEH 146



 Score = 41.2 bits (95), Expect(2) = 2e-12
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKRED 282
           DRGY+VG+FEI+  K+Q + K+G  +KRED
Sbjct: 25  DRGYIVGDFEIEMTKSQFIQKYGENMKRED 54


>ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutrema salsugineum]
           gi|557107329|gb|ESQ47636.1| hypothetical protein
           EUTSA_v10021534mg [Eutrema salsugineum]
          Length = 206

 Score = 60.5 bits (145), Expect(3) = 1e-11
 Identities = 30/39 (76%), Positives = 35/39 (89%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP ARTCIS+ISS+F+LE   +AE+LVNIKEHVLVPEH
Sbjct: 106 LTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEH 144



 Score = 32.0 bits (71), Expect(3) = 1e-11
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRGY + + EI     Q + K G  +KREDL + ++      +  + IF          K
Sbjct: 24  DRGYFIADSEITMTLGQFIRKHGDNMKREDL-VTLKAKRNDNNDQLYIF-----FPDEAK 77

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KTMK   NRM +++V
Sbjct: 78  VGVKTMKMYTNRMKSENV 95



 Score = 21.9 bits (45), Expect(3) = 1e-11
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RA+LVVQQN    ++
Sbjct: 95  VFRAILVVQQNLTPFAR 111


>ref|XP_001754558.1| predicted protein [Physcomitrella patens]
           gi|162694179|gb|EDQ80528.1| predicted protein
           [Physcomitrella patens]
          Length = 208

 Score = 52.8 bits (125), Expect(3) = 6e-11
 Identities = 24/39 (61%), Positives = 34/39 (87%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP AR C+S++SS++++E   +AELLVNIK+HVLVP+H
Sbjct: 108 LTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVPQH 146



 Score = 37.7 bits (86), Expect(3) = 6e-11
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DR Y+V EFE+   K +   K+G   KREDL I+          + + F          K
Sbjct: 26  DRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNNAEHIFVFF------PEEAK 79

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KT+KT ++RM  ++V
Sbjct: 80  VGVKTIKTYVDRMKTENV 97



 Score = 21.6 bits (44), Expect(3) = 6e-11
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RA+LVVQQN    ++
Sbjct: 97  VHRAILVVQQNLTPFAR 113


>ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 208

 Score = 49.3 bits (116), Expect(3) = 2e-10
 Identities = 26/40 (65%), Positives = 33/40 (82%), Gaps = 4/40 (10%)
 Frame = -2

Query: 108 LTPLARTCISQISSE-FYLE---KAELLVNIKEHVLVPEH 1
           LTP AR C+S+ +S+ F+LE   +AELLVNIK+HVLVPEH
Sbjct: 107 LTPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEH 146



 Score = 38.9 bits (89), Expect(3) = 2e-10
 Identities = 26/78 (33%), Positives = 38/78 (48%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRGY VG+FEI   + Q   K+G  +KRED+ I           V + F          K
Sbjct: 24  DRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQVYICF-----FPEEAK 78

Query: 191 LELKTMKTSINRM*NDDV 138
           + +K +KT   RM +++V
Sbjct: 79  VGIKPLKTYTTRMKSENV 96



 Score = 21.9 bits (45), Expect(3) = 2e-10
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RA+LVVQQN    ++
Sbjct: 96  VFRAILVVQQNLTPFAR 112


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 207

 Score = 49.3 bits (116), Expect(3) = 4e-10
 Identities = 26/40 (65%), Positives = 33/40 (82%), Gaps = 4/40 (10%)
 Frame = -2

Query: 108 LTPLARTCISQISSE-FYLE---KAELLVNIKEHVLVPEH 1
           LTP AR C+S+ +S+ F+LE   +AELLVNIK+HVLVPEH
Sbjct: 106 LTPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEH 145



 Score = 38.1 bits (87), Expect(3) = 4e-10
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRGY VG+FEI   + Q   K+G  +KRED+ I           + + F          K
Sbjct: 24  DRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQIYVFF------PEEAK 77

Query: 191 LELKTMKTSINRM*NDDV 138
           + +K +KT   RM +++V
Sbjct: 78  VGIKPLKTYTTRMKSENV 95



 Score = 21.9 bits (45), Expect(3) = 4e-10
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RA+LVVQQN    ++
Sbjct: 95  VFRAILVVQQNLTPFAR 111


>ref|XP_006355758.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 207

 Score = 45.8 bits (107), Expect(2) = 4e-10
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -3

Query: 374 NDRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDI 273
           NDRGYLV EFEIK  K + L K+G  +KR+DL+I
Sbjct: 24  NDRGYLVEEFEIKMSKQEFLQKYGVHMKRQDLEI 57



 Score = 43.9 bits (102), Expect(2) = 4e-10
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
 Frame = -2

Query: 195 KVGVKDYEDFHQQDVK**CTGQFWLFNRILTPLARTCISQISSEFYLE---KAELLVNIK 25
           KVGVK+   + ++  +   +   ++  + LTP +   IS++S+  +LE   +AEL+VN+K
Sbjct: 78  KVGVKEMRPYAERLRQEEISQAIFVVQQKLTPKSLQFISEVSTMLHLEVFQEAELVVNVK 137

Query: 24  EHVLVPEH 1
           +H +VPEH
Sbjct: 138 DHAIVPEH 145


>ref|XP_001758465.1| predicted protein [Physcomitrella patens]
           gi|162690500|gb|EDQ76867.1| predicted protein
           [Physcomitrella patens]
          Length = 208

 Score = 52.0 bits (123), Expect(3) = 6e-10
 Identities = 25/39 (64%), Positives = 33/39 (84%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           LTP AR C+S+++S+++LE   +AELLVNIKEHVLVP H
Sbjct: 108 LTPFARQCVSEMASKYHLEVFQEAELLVNIKEHVLVPLH 146



 Score = 35.0 bits (79), Expect(3) = 6e-10
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DR Y+V ++E+   K Q   K+G   KREDL I+          + + F          K
Sbjct: 26  DRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNNAEHIFVFF------PEEAK 79

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KT+KT ++RM  ++V
Sbjct: 80  VGVKTIKTYVDRMKTENV 97



 Score = 21.6 bits (44), Expect(3) = 6e-10
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RA+LVVQQN    ++
Sbjct: 97  VHRAILVVQQNLTPFAR 113


>ref|XP_004240216.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Solanum lycopersicum]
          Length = 207

 Score = 44.3 bits (103), Expect(2) = 3e-09
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = -3

Query: 374 NDRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDI 273
           NDRGY+V EFEIK  K + L K+G  +KR+DL+I
Sbjct: 24  NDRGYVVEEFEIKMSKQEFLHKYGVNMKRQDLEI 57



 Score = 42.7 bits (99), Expect(2) = 3e-09
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
 Frame = -2

Query: 195 KVGVKDY----EDFHQQDVK**CTGQFWLFNRILTPLARTCISQISSEFYLE---KAELL 37
           KVGVK+     E   Q+DV    +   ++  + LTP +   IS++S+   LE   +AEL+
Sbjct: 78  KVGVKEMRPYAERLRQEDV----SQAIFVVKQKLTPKSDQFISEVSTMLNLEVFQEAELI 133

Query: 36  VNIKEHVLVPEH 1
           VN+K H +VPEH
Sbjct: 134 VNVKNHAIVPEH 145


>gb|EYU23925.1| hypothetical protein MIMGU_mgv1a013961mg [Mimulus guttatus]
          Length = 205

 Score = 54.3 bits (129), Expect(2) = 6e-09
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
 Frame = -2

Query: 198 PKVGVKDYEDFHQQDVK**CTGQFWLFNRILTPLARTCISQISSEFYLE---KAELLVNI 28
           PKVGVK      ++           +  + LTP A+ CIS+ISS+F++E   +AELL NI
Sbjct: 75  PKVGVKPITISTKRMADEGVRRAILVVQQGLTPFAKNCISEISSKFHVEYFLEAELLTNI 134

Query: 27  KEHVLVPEH 1
           KEH+LVP+H
Sbjct: 135 KEHILVPQH 143



 Score = 31.6 bits (70), Expect(2) = 6e-09
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 374 NDRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDI 273
           +DRGYLV + EI+  ++Q + K+G  + RE L I
Sbjct: 22  SDRGYLVDDSEIEMTRSQFVQKYGEGMTREGLVI 55


>ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
           gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1-like
           [Cucumis sativus]
          Length = 205

 Score = 43.1 bits (100), Expect(3) = 4e-08
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = -3

Query: 371 DRGYLVGEFEIKEMKAQLLSKFGYIIKREDLDIEVQTMIMF*SLVILIFGIFMKLKINRK 192
           DRG++VG+FE+   + Q  +++G  +K+EDL I  ++M    S  I +F          K
Sbjct: 24  DRGFVVGDFELAMSREQFKNQYGETMKKEDLVIN-KSMRNNSSDQIYVF-----FPEEPK 77

Query: 191 LELKTMKTSINRM*NDDV 138
           + +KT++T INRM +D+V
Sbjct: 78  VSVKTVRTYINRMKSDNV 95



 Score = 38.5 bits (88), Expect(3) = 4e-08
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 LTPLARTCISQISSEFYLE---KAELLVNIKEHVLVPEH 1
           L+  AR+ I + + +F+LE   +AELLVNIK+HVL+PEH
Sbjct: 106 LSSFARSSICE-APKFHLEVFQEAELLVNIKDHVLIPEH 143



 Score = 20.8 bits (42), Expect(3) = 4e-08
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 142 MYRAVLVVQQNFNSLSQ 92
           ++RA+LVVQ+  +S ++
Sbjct: 95  VFRAILVVQEKLSSFAR 111