BLASTX nr result
ID: Papaver27_contig00050704
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00050704
(1185 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 442 e-121
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 441 e-121
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 441 e-121
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 425 e-116
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 424 e-116
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 422 e-115
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 416 e-114
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 416 e-114
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 411 e-112
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 409 e-111
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps... 408 e-111
ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, par... 405 e-110
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 404 e-110
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 404 e-110
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 404 e-110
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 401 e-109
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 398 e-108
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 398 e-108
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza] 392 e-106
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 389 e-105
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 442 bits (1136), Expect = e-121
Identities = 229/395 (57%), Positives = 293/395 (74%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
S VKC+FVCM+ V S D +IL K++ +ARS+FMHV NLSS + YMARFSLILSK
Sbjct: 188 SPVKCFFVCMESVASVDN---QDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSK 244
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T+ L++D + V ++ I D CRD+DG VY DG+P IHTDGTGFIS DLALKCP+N K
Sbjct: 245 TMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVK 304
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
G S+ E++ +H +E++ GDPPLLIQFR+F+NG AVKGT LVNKK
Sbjct: 305 GTCLQASNIERLRVHNEV------MEQNPECLHGDPPLLIQFRLFNNGRAVKGTFLVNKK 358
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
L +T+ VRPSMIKV +D N NS E+V TS +PK+T LSK LI LLSYGGVP+
Sbjct: 359 LNHRTLHVRPSMIKVETDPKLSNTFS-KNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPE 417
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSV 900
+F+ +L +ALED ++K+AALR AL+YG+MDD +VA MI CGIPL E +L+ LS+
Sbjct: 418 EFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSI 477
Query: 901 LMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHF 1080
L + E KSLK GK+P+ +SYYLMGTADPTG+L+ +VC+IL+ GQVSG++LVY++PGLHF
Sbjct: 478 LKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHF 537
Query: 1081 GDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
GDIH+L ATYV+ELE++VGNAKY IFFP GPRS+
Sbjct: 538 GDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSL 572
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 441 bits (1133), Expect = e-121
Identities = 226/395 (57%), Positives = 295/395 (74%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
S VKC+FV M+ V S D +IL K++ +ARS+FMHV NLSS + YMARFSLILSK
Sbjct: 188 SPVKCFFVRMESVASIDN---QDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSK 244
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T+ L++D + V ++ I D CRD+DG +VY DG+P IHTDGTGFIS DLALKCP+N FK
Sbjct: 245 TMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFK 304
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
G S+ E++ +H +E+ GDPPLLIQFR+F+NG AVKGT LVNKK
Sbjct: 305 GTCLRASNIERLNVHNEV------MEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKK 358
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
L +T+ +RPSMIKV +D ++ NS E+V TS +PK+T LSK LI LLSYGGVP+
Sbjct: 359 LTHQTLHIRPSMIKVETD-PKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPE 417
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSV 900
+F+ ++ +ALED ++K AALR AL+YG+MDD +VA MI CGIPL E +L+ RLS+
Sbjct: 418 EFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRLSI 477
Query: 901 LMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHF 1080
LM+ E KSLK GK+P+ +SYYLMGTADPTG+L+ +VC+IL+ GQ+SG++L+Y++PGLHF
Sbjct: 478 LMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHF 537
Query: 1081 GDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
GDIH+L ATYV+ELE++VGNAKY IFFP GPRS+
Sbjct: 538 GDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSL 572
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 441 bits (1133), Expect = e-121
Identities = 226/395 (57%), Positives = 295/395 (74%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
S VKC+FV M+ V S D +IL K++ +ARS+FMHV NLSS + YMARFSLILSK
Sbjct: 210 SPVKCFFVRMESVASIDN---QDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSK 266
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T+ L++D + V ++ I D CRD+DG +VY DG+P IHTDGTGFIS DLALKCP+N FK
Sbjct: 267 TMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFK 326
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
G S+ E++ +H +E+ GDPPLLIQFR+F+NG AVKGT LVNKK
Sbjct: 327 GTCLRASNIERLNVHNEV------MEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKK 380
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
L +T+ +RPSMIKV +D ++ NS E+V TS +PK+T LSK LI LLSYGGVP+
Sbjct: 381 LTHQTLHIRPSMIKVETD-PKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPE 439
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSV 900
+F+ ++ +ALED ++K AALR AL+YG+MDD +VA MI CGIPL E +L+ RLS+
Sbjct: 440 EFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRLSI 499
Query: 901 LMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHF 1080
LM+ E KSLK GK+P+ +SYYLMGTADPTG+L+ +VC+IL+ GQ+SG++L+Y++PGLHF
Sbjct: 500 LMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHF 559
Query: 1081 GDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
GDIH+L ATYV+ELE++VGNAKY IFFP GPRS+
Sbjct: 560 GDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSL 594
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 425 bits (1093), Expect = e-116
Identities = 221/395 (55%), Positives = 277/395 (70%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
SSVKCYFV M+ S L K+V EAR +FMH H +SS KYMARFSLILSK
Sbjct: 269 SSVKCYFVFMES-----------SALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSK 317
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T+KLD+D ++V ++ I+D RD+DG +VY+ED +P I TDGTGFIS+DLAL+CP N+ +
Sbjct: 318 TVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCR 377
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
GK+ + + + PLLIQ R+F+NG AVKGT L+N+K
Sbjct: 378 GKYMNNGNSD--------------------------PLLIQCRLFNNGCAVKGTLLLNRK 411
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
LPP+TIQ+RPSMIKV +D ++D NS E+ TS +P+R+ LSKYLI LLSYGGVP+
Sbjct: 412 LPPRTIQIRPSMIKVETD-PKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPN 470
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSV 900
YF+ LL DALED + KRAALR +L +GEMDD +V +MIL GIP+ E FL LS
Sbjct: 471 EYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSF 530
Query: 901 LMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHF 1080
++ E K L+ GKLP+ND +YLMGTADPTG LK +VC+IL+ GQV G +LVYKHPGLHF
Sbjct: 531 MVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHF 590
Query: 1081 GDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
GDIHVL ATYV+ LE +VGNAKY IFFPI GPRS+
Sbjct: 591 GDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSL 625
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 424 bits (1090), Expect = e-116
Identities = 221/395 (55%), Positives = 279/395 (70%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
SSVKCYFV M+ S L K+V EAR +FMH H +SS KYMARFSLILSK
Sbjct: 277 SSVKCYFVFMES-----------SALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSK 325
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T+KLD+D ++V ++ I+D RD+DG +VY+ED +P I TDGTGFIS+DLAL+CP N+ +
Sbjct: 326 TVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCR 385
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
GK+ + + + + + PLLIQ R+F+NG AVKGT L+N+K
Sbjct: 386 GKYMNNGNSD------VCDSRY--------------PLLIQCRLFNNGCAVKGTLLLNRK 425
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
LPP+TIQ+RPSMIKV +D ++D NS E+ TS +P+R+ LSKYLI LLSYGGVP+
Sbjct: 426 LPPRTIQIRPSMIKVETD-PKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPN 484
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSV 900
YF+ LL DALED + KRAALR +L +GEMDD +V +MIL GIP+ E FL LS
Sbjct: 485 EYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSF 544
Query: 901 LMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHF 1080
++ E K L+ GKLP+ND +YLMGTADPTG LK +VC+IL+ GQV G +LVYKHPGLHF
Sbjct: 545 MVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHF 604
Query: 1081 GDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
GDIHVL ATYV+ LE +VGNAKY IFFPI GPRS+
Sbjct: 605 GDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSL 639
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 422 bits (1085), Expect = e-115
Identities = 222/397 (55%), Positives = 284/397 (71%), Gaps = 2/397 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFC-KSVSEARSLFMHVHNLSSTTKYMARFSLILS 177
+ VKCYF+ D ++D + + +F K+++EAR FMHVH L S KYMARFSLILS
Sbjct: 314 NGVKCYFIRTDSTAAND---MGKAYIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILS 370
Query: 178 KTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIF 357
KT KL++D + +EI++I C DQ+ +V +++ EPR+H+DGTG+IS+DLA CP NIF
Sbjct: 371 KTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVNIF 430
Query: 358 KGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIG-DPPLLIQFRMFHNGSAVKGTALVN 534
KGK S+ K+I+ G DPPLLIQFRMF++G+AVKGT L+N
Sbjct: 431 KGKCLSK--------------------KNIQESCGQDPPLLIQFRMFYDGNAVKGTFLLN 470
Query: 535 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 714
KKLP +T+QVRPSMIKV D N NS EVV TS PKRT LS+ L+ LLSYGGV
Sbjct: 471 KKLPDRTVQVRPSMIKVSKDRALSNFSTF-NSLEVVTTSNPPKRTKLSRNLVALLSYGGV 529
Query: 715 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARL 894
P+ +FL+LL + +E+TK N+KRAAL+AAL++G+MDD A+MIL GIPL E LK RL
Sbjct: 530 PNEFFLDLLLNTMEETKTIFNNKRAALKAALNHGDMDDQNAAQMILVGIPLDEPHLKDRL 589
Query: 895 SVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGL 1074
S+L E LK G+LP+ +SYYLMGT DPTG LK +VCVILESGQ+SGD+LVY++PG+
Sbjct: 590 SILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGDVLVYRNPGV 649
Query: 1075 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
HFGDIHVL ATYV+ LE YVGN+KY +FFP GPRS+
Sbjct: 650 HFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSL 686
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 416 bits (1070), Expect = e-114
Identities = 220/397 (55%), Positives = 295/397 (74%), Gaps = 2/397 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
S VKCYFV M+ D IL K+V EAR +FMHV +SS YM+R SLILSK
Sbjct: 317 SPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 374
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T+KL++DF+ + +E IED CRD+DG +VY +DGE IHTDGTGFIS+DLALKCP ++K
Sbjct: 375 TMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYK 433
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
K ++ E+ + + E + ++ S+ G+PPLL+Q R+F+NG+AVKGT L+NKK
Sbjct: 434 EKCTNDDSTERSIDRKELEANFSDVART-ESHYGEPPLLMQVRLFYNGTAVKGTLLLNKK 492
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
LPP+TIQ+RPSMIKV++D ++D NS EVV TS +P++T LS+ LI LLSYGGVP+
Sbjct: 493 LPPQTIQIRPSMIKVKADRD-LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPE 551
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD-DFLVAKMILCGIPLGESFLKARLS 897
+FL++L +AL+D + ++KR AL+ + +YG MD DF A+MIL GI L E +L+ RLS
Sbjct: 552 IFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLS 611
Query: 898 VLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD-ILVYKHPGL 1074
+LM+ E KSL+ GKLP+ +SYYLMGT DPTGILK ++VC+IL+ GQVS + +LVY++PGL
Sbjct: 612 ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGL 671
Query: 1075 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
HFGDIHVL ATYV+ELE++VG +KY IFFP GPRS+
Sbjct: 672 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 708
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 416 bits (1070), Expect = e-114
Identities = 220/397 (55%), Positives = 295/397 (74%), Gaps = 2/397 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
S VKCYFV M+ D IL K+V EAR +FMHV +SS YM+R SLILSK
Sbjct: 319 SPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T+KL++DF+ + +E IED CRD+DG +VY +DGE IHTDGTGFIS+DLALKCP ++K
Sbjct: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYK 435
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
K ++ E+ + + E + ++ S+ G+PPLL+Q R+F+NG+AVKGT L+NKK
Sbjct: 436 EKCTNDDSTERSIDRKELEANFSDVART-ESHYGEPPLLMQVRLFYNGTAVKGTLLLNKK 494
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
LPP+TIQ+RPSMIKV++D ++D NS EVV TS +P++T LS+ LI LLSYGGVP+
Sbjct: 495 LPPQTIQIRPSMIKVKADRD-LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPE 553
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD-DFLVAKMILCGIPLGESFLKARLS 897
+FL++L +AL+D + ++KR AL+ + +YG MD DF A+MIL GI L E +L+ RLS
Sbjct: 554 IFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLS 613
Query: 898 VLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD-ILVYKHPGL 1074
+LM+ E KSL+ GKLP+ +SYYLMGT DPTGILK ++VC+IL+ GQVS + +LVY++PGL
Sbjct: 614 ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGL 673
Query: 1075 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
HFGDIHVL ATYV+ELE++VG +KY IFFP GPRS+
Sbjct: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 710
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 411 bits (1057), Expect = e-112
Identities = 226/404 (55%), Positives = 286/404 (70%), Gaps = 9/404 (2%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
S+VKCYFV M+ D I P L ++V EARSLFMH H +SS YMARFSLILSK
Sbjct: 360 SAVKCYFVRMESDAYIDK--IEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSK 417
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
TI L ID ++V V+ I DI C+D G ++Y DG+P IHTDGTGFIS+DLAL+CP N+FK
Sbjct: 418 TINLKIDLSTVNVQRIGDIPCKDIYGNVIYR-DGKPLIHTDGTGFISEDLALECPMNVFK 476
Query: 361 GKWSSQSDFEKI---------LLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAV 513
G+ +D + I ++ + T GLE + +PPLLIQFR+F+NG AV
Sbjct: 477 GQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLE------LREPPLLIQFRLFYNGLAV 530
Query: 514 KGTALVNKKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIV 693
KGT L+NK+LPP+TIQ+R SMIKV D N + NS E+V TS PKRT LS+ LI
Sbjct: 531 KGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFET-ENSLELVGTSNPPKRTFLSRNLIA 589
Query: 694 LLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGE 873
LL+YGGVP YF+ +L DAL+D + + KRAALR +++ GEMDDFLVA+MIL GIPL E
Sbjct: 590 LLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDE 649
Query: 874 SFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDIL 1053
S+L+ RLSVL++ E KSLK G+L + + YYLMGT DPT L+ +VCVIL +GQ++G +L
Sbjct: 650 SYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVL 709
Query: 1054 VYKHPGLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
VY++PGLHFGDIHVLTA YV++L VGNAKY IFF GPRS+
Sbjct: 710 VYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSV 753
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 409 bits (1051), Expect = e-111
Identities = 216/393 (54%), Positives = 269/393 (68%)
Frame = +1
Query: 7 VKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSKTI 186
VKCYF+ D D P IL KS+ EAR FMHVH + YMARFSLILSKT
Sbjct: 304 VKCYFIRTDSTAFYDMQN--PYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK 361
Query: 187 KLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFKGK 366
L++D + ++I+DI C DQDG V +++ +P IH+DGTG+IS+DLA CP NIFKGK
Sbjct: 362 TLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK 421
Query: 367 WSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKKLP 546
++ DPPLLIQFRMF++G AVKGT L+NKKL
Sbjct: 422 CLRSESIQEACYQ-------------------DPPLLIQFRMFYDGYAVKGTFLLNKKLC 462
Query: 547 PKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPDGY 726
P+T+QVRPSMIKV D N N+ EVV TS PKRT LSK L+ LLSYGG+P+ +
Sbjct: 463 PRTVQVRPSMIKVSKDPSLSNFSTF-NALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEF 521
Query: 727 FLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSVLM 906
FL++L + LE++K +KRAAL AAL+YGEMDD A+MIL GIPL E LK LS+L+
Sbjct: 522 FLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILL 581
Query: 907 RTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHFGD 1086
+TE LK GKLP+ +SYYLMGT DPTG LK +VCVILESGQ+SG++LVY++PGLHFGD
Sbjct: 582 KTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGD 641
Query: 1087 IHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
IH+L ATYV+ LE YVGN+K+ +FFP GPRS+
Sbjct: 642 IHILKATYVKALEEYVGNSKFAVFFPQKGPRSL 674
>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
gi|482565607|gb|EOA29796.1| hypothetical protein
CARUB_v10012890mg [Capsella rubella]
Length = 998
Score = 408 bits (1048), Expect = e-111
Identities = 221/394 (56%), Positives = 277/394 (70%), Gaps = 1/394 (0%)
Frame = +1
Query: 7 VKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSKTI 186
VKCYF+ D P IL S+ EAR FMHV+NL S YMARFSLILSKT
Sbjct: 321 VKCYFIRTGSTALSDMEN--PYILDGMSIHEARMHFMHVYNLPSPANYMARFSLILSKTK 378
Query: 187 KLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFKGK 366
KL++D + E+I+DI C DQD V +++G+P IH+DGTG+IS+DLA CP NIFKGK
Sbjct: 379 KLEMDMTGITFEKIDDIHCHDQDNHDVLDKNGKPCIHSDGTGYISEDLARMCPINIFKGK 438
Query: 367 WSSQSDFEKILLHQIAEETSLGLEKSIRSYIG-DPPLLIQFRMFHNGSAVKGTALVNKKL 543
S +S+ +I+ G DPPLLIQFRMF+ G AVKGT L NKKL
Sbjct: 439 -SIRSN-------------------NIKGTCGEDPPLLIQFRMFYKGYAVKGTFLSNKKL 478
Query: 544 PPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPDG 723
PP+T+QVRPSMIKV D +N NS EVV TS PK T LS+ LI LLSYGGVP+
Sbjct: 479 PPQTVQVRPSMIKVYEDQALLNFSTF-NSLEVVNTSNPPKMTRLSRNLIALLSYGGVPND 537
Query: 724 YFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSVL 903
+FL +L LE++K +RAA++AA++YG+MDD A+MIL IPL E LK RLS+L
Sbjct: 538 FFLNILRKTLEESKTIFYSERAAIKAAINYGDMDDQNTAEMILVDIPLDEPHLKDRLSIL 597
Query: 904 MRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHFG 1083
++TE +LKEG+LP+ +SYYLMGT DPTG LK ++VCVILE+GQ+SG++LVY++PGLHFG
Sbjct: 598 LKTEKNALKEGRLPIGESYYLMGTVDPTGELKENEVCVILETGQISGNVLVYRNPGLHFG 657
Query: 1084 DIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
DIHVL ATYV+ LE+YVGN+KY +FFP GPRS+
Sbjct: 658 DIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSL 691
>ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
gi|561026288|gb|ESW24973.1| hypothetical protein
PHAVU_004G1764001g, partial [Phaseolus vulgaris]
Length = 689
Score = 405 bits (1040), Expect = e-110
Identities = 223/399 (55%), Positives = 283/399 (70%), Gaps = 4/399 (1%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
SSVKCYFV M S D A IL K+VSEAR LFMH H L S KYMARFSLILSK
Sbjct: 278 SSVKCYFVRMQSCWSIDGS--ANYILSNKTVSEARGLFMHAHLLPSLDKYMARFSLILSK 335
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T KL+ID A+V V+ I+D+ C+D++G I+Y+ + +PRI TDGTGFIS DLAL CP ++ K
Sbjct: 336 TFKLNIDLATVNVQTIQDVYCQDENGNIIYDNE-KPRILTDGTGFISGDLALLCPNSVCK 394
Query: 361 GKWSSQSDFEKIL----LHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTAL 528
G + ++I L + +E E ++ PPLLIQ R+FH GSA+KGT L
Sbjct: 395 GNNLENNYIQEINNLLELEDMCKEMG---ETELKLTTHQPPLLIQCRLFHMGSAIKGTLL 451
Query: 529 VNKKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYG 708
VNKKLPP+TI VRPSMIKV +DL +N I NS E+V TS+KP RT LSK LI LLSYG
Sbjct: 452 VNKKLPPRTIHVRPSMIKVETDLS-LNMQSI-NSLEIVNTSIKPNRTYLSKNLIALLSYG 509
Query: 709 GVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKA 888
GVP+ +F LL LE+ ++KR ALRA++++G MD++ A MILCGIP E FL+
Sbjct: 510 GVPNEFFKSLLESNLEEANHVFSNKRVALRASVNHGNMDEYNAAGMILCGIPQDEPFLQY 569
Query: 889 RLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHP 1068
RLS+L R E K L+ GKL + D +YLMGT DPTG L+ QVC+I ++GQ++GD+LVY++P
Sbjct: 570 RLSILAREEKKKLRGGKLYIPDCFYLMGTVDPTGCLEKGQVCIIHQNGQITGDVLVYRNP 629
Query: 1069 GLHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
GLHFGDIH++ AT V+ELE+YVG+ KY IFFP VG RS+
Sbjct: 630 GLHFGDIHIMCATRVEELESYVGHNKYAIFFPRVGSRSV 668
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 404 bits (1039), Expect = e-110
Identities = 217/392 (55%), Positives = 269/392 (68%)
Frame = +1
Query: 10 KCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSKTIK 189
KCYF+ D S D P I KS+ EAR FMHVH L S YMARFSLILSKT K
Sbjct: 313 KCYFIRTDSTASID--MEKPYIFSGKSIHEARMHFMHVHTLPSLANYMARFSLILSKTKK 370
Query: 190 LDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFKGKW 369
L++D V E I+DI C DQDG V +++ +PRIH+DGTG+IS+DLA CP NI+KGK
Sbjct: 371 LEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISEDLAQMCPVNIYKGK- 429
Query: 370 SSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKKLPP 549
L +K + +PPLLIQFRMF+NG A+KGT L+NKK+P
Sbjct: 430 ------------------CLRSDKIKEACGQEPPLLIQFRMFYNGYAIKGTFLLNKKIPS 471
Query: 550 KTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPDGYF 729
+T+QVRPSMIKV D + + N+ EVV TS PKRT LS+ L+ LLSYGG+PD +F
Sbjct: 472 RTVQVRPSMIKVLPDS--LPNISTFNTLEVVNTSFPPKRTKLSRNLVALLSYGGIPDEFF 529
Query: 730 LELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSVLMR 909
L++L + LE++K +KRAAL AAL YGEMDD A+MIL GIPL E LK LS ++
Sbjct: 530 LDILHNTLEESKAIFYNKRAALNAALSYGEMDDQNAAQMILAGIPLDEPHLKTCLSSFLK 589
Query: 910 TELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHFGDI 1089
E LK G+LP+ +SYYLMGT DPTG LK +VCVILESGQ+SG++LVY++PGLHFGDI
Sbjct: 590 REKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDI 649
Query: 1090 HVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
HVL ATYV+ LE YVGN+K+ +FFP GPRS+
Sbjct: 650 HVLKATYVKALEEYVGNSKFAVFFPQKGPRSL 681
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 404 bits (1038), Expect = e-110
Identities = 216/395 (54%), Positives = 276/395 (69%), Gaps = 1/395 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
+ VKCYFVCM D T P IL K++ EARS+FM VH + + KYMARFSLILSK
Sbjct: 296 TGVKCYFVCMKSDAESDMHT--PYILSNKTIQEARSMFMDVHTVPNLAKYMARFSLILSK 353
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
TIKL++D SV +E I D C D IVY+++G+ IHTDGTGFIS+DL K +NIFK
Sbjct: 354 TIKLEVDLGSVNIERINDKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKNIFK 413
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
++ Q E L S+ L++ I+ GD LLIQFR+F++G AVKGT LVNK
Sbjct: 414 ERYLKQKKVETCLNGMELNAKSV-LDEEIKYVSGDLHLLIQFRLFYDGCAVKGTVLVNKL 472
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
LPP TIQVRPSM+KV D + + P NSFE+V TS +P+ LS+YLI LLS+GGVP
Sbjct: 473 LPPNTIQVRPSMVKVERDTDF-SRLPSFNSFEMVGTSNRPRGAALSRYLITLLSHGGVPK 531
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEM-DDFLVAKMILCGIPLGESFLKARLS 897
F+ L+ AL+D + K+ AL AA+ Y E+ D+ LVA+MI CG+PL E +L+ RLS
Sbjct: 532 SCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGLPLEEPYLQHRLS 591
Query: 898 VLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLH 1077
+LM+ E K LKEGK+ + +SYYLMGTADPTG LK ++VC+IL+ GQ+SG +LVY+HPGLH
Sbjct: 592 ILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGLH 651
Query: 1078 FGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRS 1182
FGDIHV TATY+++L VGNAK+ IFF GPRS
Sbjct: 652 FGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRS 686
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 404 bits (1038), Expect = e-110
Identities = 213/393 (54%), Positives = 267/393 (67%)
Frame = +1
Query: 7 VKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSKTI 186
VKCYF+ D S D P I KS+ EAR FMHVH + YMARFSLILSKT
Sbjct: 308 VKCYFIRTDSTASCDMEN--PYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTK 365
Query: 187 KLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFKGK 366
L++D + + I+DI C DQDG V +++ +P IH+DGTG+IS+DLA CP NIFKGK
Sbjct: 366 TLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK 425
Query: 367 WSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKKLP 546
+ ++ DPPLLIQFRMF++G AVKGT L+NKKL
Sbjct: 426 CLRSENIQEACNQ-------------------DPPLLIQFRMFYDGYAVKGTFLLNKKLC 466
Query: 547 PKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPDGY 726
P+T+QVRPSMIKV D N N+ EVV TS P+RT LSK L+ LLSYGG+P+ +
Sbjct: 467 PRTVQVRPSMIKVSKDPSLSNFSTF-NALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEF 525
Query: 727 FLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSVLM 906
FL++L + LE++K +K AAL AL+YGEMDD A+MIL GIPL E LK LS+L+
Sbjct: 526 FLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVGIPLDEPHLKNHLSILL 585
Query: 907 RTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHFGD 1086
+TE LK G+LP+ +SYYLMGT DPTG LK +VCVILESGQ+SG++LVY++PGLHFGD
Sbjct: 586 KTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGD 645
Query: 1087 IHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
IH+L ATYV+ LE YVGN+KY +FFP GPRS+
Sbjct: 646 IHILKATYVKALEEYVGNSKYAVFFPQKGPRSL 678
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 401 bits (1030), Expect = e-109
Identities = 221/396 (55%), Positives = 285/396 (71%), Gaps = 1/396 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNL-SSTTKYMARFSLILS 177
S+VKCYFV M S D A IL K+VSEAR+LFMH H L + KYMARFSLILS
Sbjct: 292 STVKCYFVRMQSGCSADEG--ADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILS 349
Query: 178 KTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIF 357
KT+KL+ID +V V++I D C+D +G I+ + + +PRI TDGTGFIS+DLAL CP N++
Sbjct: 350 KTLKLNIDLTTVSVQKIPDEYCKDANGNIMVDNE-KPRILTDGTGFISRDLALLCPNNVY 408
Query: 358 KGKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNK 537
KG + ++I E+ S + ++ + +PPLLIQ R+FH G A+KGT LVN+
Sbjct: 409 KGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNR 468
Query: 538 KLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVP 717
KLPP+TIQVRPSMIKV D V+ I NS EVV TS KPKR LSK+LI LLS+GGVP
Sbjct: 469 KLPPRTIQVRPSMIKVEKDPS-VHMQSI-NSLEVVTTSNKPKRGYLSKHLIALLSFGGVP 526
Query: 718 DGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLS 897
+ +F++LL +ED +++KR+ALRA+++ GE D++ A+MILCGIPL E FLK LS
Sbjct: 527 NEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLS 586
Query: 898 VLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLH 1077
R E K L+ GKL M D +YLMGT DPTG LK +QVC+I E+ Q+ GD+LVY++PGLH
Sbjct: 587 RFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLH 646
Query: 1078 FGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
FGDIH + ATYV+ELE+YVG++KYGIFFP VG RS+
Sbjct: 647 FGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSV 682
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 398 bits (1023), Expect = e-108
Identities = 210/397 (52%), Positives = 284/397 (71%), Gaps = 3/397 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFC-KSVSEARSLFMHVHNLSSTTKYMARFSLILS 177
+S+KCYFV + +++ + S +F K +S+AR FMHVH +S+ KY AR SLILS
Sbjct: 322 ASLKCYFVRFESIETCND---GGSYVFSTKRISQARCQFMHVHMVSNMAKYAARLSLILS 378
Query: 178 KTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIF 357
KTIKL ++ ASV +E IEDI CRD++GCI+ +EDGEPRIHTDGTGFIS+DLA+ CP++
Sbjct: 379 KTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPRIHTDGTGFISEDLAMHCPKDFV 438
Query: 358 KGKWSSQSDFEKILLHQIAEETSLGLEKSIR-SYIGDPPLLIQFRMFHNGSAVKGTALVN 534
K ++ ++E + + L E+ S+ +PPLL+Q R+F NG AVKGT LVN
Sbjct: 439 KAEYIKDENYENFV-----DIVDLDAERRESVSWNREPPLLMQCRLFFNGCAVKGTFLVN 493
Query: 535 KKLPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGV 714
+K+ + I +RPSM+KV D ++ P +S E+VA S +P + LSK LI LLSYGGV
Sbjct: 494 RKIGSRKIHIRPSMVKVEIDPA-ISSIPTFDSLEIVAISHRPNKAYLSKNLISLLSYGGV 552
Query: 715 PDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDD-FLVAKMILCGIPLGESFLKAR 891
YF+ELL ALE+TK+ + KRAAL+ ++Y EMDD L A+MI GIPL E L+AR
Sbjct: 553 QKEYFMELLGSALEETKQVYLRKRAALKVVINYREMDDDCLTARMISSGIPLNEPHLRAR 612
Query: 892 LSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPG 1071
LS L + E L+ GKLP++DS+YLMGTADPTG+L+ ++VCVIL++GQ+SG +LVY++PG
Sbjct: 613 LSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQISGRVLVYRNPG 672
Query: 1072 LHFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRS 1182
LHFGD+HV+ A YV+EL + VG+AKYGIFF GPRS
Sbjct: 673 LHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRS 709
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 398 bits (1022), Expect = e-108
Identities = 213/393 (54%), Positives = 273/393 (69%)
Frame = +1
Query: 7 VKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSKTI 186
VKCYF+ D S D P I KS+ EAR FMHV+ LSS YM+RFSLILSKT
Sbjct: 308 VKCYFIRTDSTASIDMQN--PYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTK 365
Query: 187 KLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFKGK 366
L++D + E+I+DI C DQD V +++G+P IH+DGTG+IS+DLA CP NIFKGK
Sbjct: 366 TLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGK 425
Query: 367 WSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKKLP 546
++ + L+ + G E PPLLIQFR+F+NG AVKGT L NKKLP
Sbjct: 426 SMRSNNIQSKNLN-FEGQGPCGQE---------PPLLIQFRIFYNGYAVKGTFLTNKKLP 475
Query: 547 PKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPDGY 726
P+T+QVRPSMIKV D N NS EVV TS P++ LS+ L+ LLSYGGVP+ +
Sbjct: 476 PRTVQVRPSMIKVYEDRTLSNLSTF-NSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDF 534
Query: 727 FLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSVLM 906
FL +L + LE++K +RAA +AA++YG DD A MIL GIPL E +LK RLS L+
Sbjct: 535 FLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTADMILVGIPLDEPYLKDRLSYLL 592
Query: 907 RTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGLHFGD 1086
+TE +LK G+ P+++SYY+MGT DPTG LK +++CVIL SGQ+SGD+LVY++PGLHFGD
Sbjct: 593 KTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGD 652
Query: 1087 IHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
IHVL ATYV+ LE+YVGNAK+ +FFP GPRS+
Sbjct: 653 IHVLKATYVKALEDYVGNAKFAVFFPQKGPRSL 685
>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
Length = 898
Score = 392 bits (1006), Expect = e-106
Identities = 208/396 (52%), Positives = 275/396 (69%), Gaps = 2/396 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
S+VKCYFV +D + S+D +LF KSVSEAR LFMH+H LS+ KYMAR SLILSK
Sbjct: 323 SAVKCYFVHLDSISSNDHEE--DYVLFRKSVSEARRLFMHIHTLSTIEKYMARLSLILSK 380
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T ++D+DFA++ VE IEDI +D +G I+ +EDG+P +HTDGTG+ISQDLA+KC ++ +
Sbjct: 381 TTRIDLDFAAIIVEIIEDIPFQDDNGSIIRDEDGKPILHTDGTGYISQDLAMKCSKDFYA 440
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
++ S FE PLLIQ R+FH+G AVKGT LVN+K
Sbjct: 441 SMHNTNSTFE--------------------------PLLIQCRLFHDGYAVKGTLLVNRK 474
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPIT-NSFEVVATSMKPKRTNLSKYLIVLLSYGGVP 717
L P IQ+RPSMIKV D +++ + NS E+ S +P R LSKYLI LLSYGGVP
Sbjct: 475 LEPGRIQIRPSMIKVEKDHSMESEEILKFNSLEINTISRRPNRNFLSKYLISLLSYGGVP 534
Query: 718 DGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVA-KMILCGIPLGESFLKARL 894
+FL LL ALE+T+ ++++R ALR A H+ + D L+A +MI CGIPL E +L+ L
Sbjct: 535 QEFFLNLLFKALEETQNVYSNRRVALRVASHHDDWDLGLMAQRMICCGIPLDEPYLQHCL 594
Query: 895 SVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDILVYKHPGL 1074
S L ++ K LKEG++P+++S YLMGTADPTG+L +VCVIL+SGQ+SG +LVY++PG+
Sbjct: 595 SKLESSQKKKLKEGRIPVDESCYLMGTADPTGVLHNDEVCVILDSGQISGKVLVYRNPGM 654
Query: 1075 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRS 1182
HFGDIHV+ A YV+ LE ++GNAKYGIFF G RS
Sbjct: 655 HFGDIHVMEAVYVKGLEEFIGNAKYGIFFSTKGQRS 690
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 389 bits (998), Expect = e-105
Identities = 214/397 (53%), Positives = 275/397 (69%), Gaps = 2/397 (0%)
Frame = +1
Query: 1 SSVKCYFVCMDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNLSSTTKYMARFSLILSK 180
SSVKCYFV + S D IL +++ E+RSLFMH H L + KYMARFSLILSK
Sbjct: 303 SSVKCYFVRTESSCSTDERE--SYILSNRTMFESRSLFMHAHMLPNIDKYMARFSLILSK 360
Query: 181 TIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKCPRNIFK 360
T KL++D+ +V V+ I D+ C+D+ G VY+ + + I TDGTGFIS+DLA+ CP N+ K
Sbjct: 361 TYKLNVDWTTVSVKTIPDVCCQDEHGNTVYHNE-KRCILTDGTGFISEDLAVLCPNNVLK 419
Query: 361 GKWSSQSDFEKILLHQIAEETSLGLEKSIRSYIGDPPLLIQFRMFHNGSAVKGTALVNKK 540
G + ++I E+ S + ++ S PPLLIQ R+FH G A+KGT LVNKK
Sbjct: 420 GSNLKNTHIKEISNLVKLEDMSKAMGEAALSK-HQPPLLIQCRLFHMGCAMKGTLLVNKK 478
Query: 541 LPPKTIQVRPSMIKVRSDLGYVNDDPITNSFEVVATSMKPKRTNLSKYLIVLLSYGGVPD 720
L P TIQVRPSMIKV +D N + NS EVV TS KP R LSKYLI LLSYG VP+
Sbjct: 479 LSPSTIQVRPSMIKVMTDPSLSNIQSL-NSMEVVNTSHKPNRAYLSKYLIALLSYGRVPN 537
Query: 721 GYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLGESFLKARLSV 900
+F+++L LED + +KRAALRA+L+Y EMDDF A MILCGIPL E FL+ LS
Sbjct: 538 EFFMDVLKSNLEDAGHIYTNKRAALRASLNYAEMDDFNAAGMILCGIPLDEPFLQHYLSK 597
Query: 901 LMRTELKSLKEGKLPMNDSYYLMGTADPT--GILKPHQVCVILESGQVSGDILVYKHPGL 1074
L++ E L+ GKL + D +YLMGT DPT L+ +QVC+I E+GQ++GD+LVY++PGL
Sbjct: 598 LVKLEKNKLRTGKLYVEDCFYLMGTVDPTEGHCLEANQVCIIHENGQITGDVLVYRNPGL 657
Query: 1075 HFGDIHVLTATYVQELENYVGNAKYGIFFPIVGPRSI 1185
HFGDIH++ ATYV+ LE+YVG+ KY IFFP VGPRS+
Sbjct: 658 HFGDIHIMQATYVEGLESYVGHGKYAIFFPCVGPRSV 694