BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00045679
         (1790 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   656   0.0  
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   629   e-177
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   625   e-176
ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prun...   624   e-176
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...   623   e-175
ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Th...   622   e-175
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis...   622   e-175
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]              619   e-174
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   615   e-173
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   615   e-173
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]              615   e-173
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]       610   e-172
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   607   e-171
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   605   e-170
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   602   e-169
ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phas...   598   e-168
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   598   e-168
gb|AHL27587.1| RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza]   591   e-166
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...   588   e-165
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ...   574   e-161

>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score =  656 bits (1692), Expect = 0.0
 Identities = 338/585 (57%), Positives = 421/585 (71%), Gaps = 3/585 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T++VSNIP T IAK+L  F E  LG +T+YALEI TEHKNWKS+G G VQFET+ +    
Sbjct: 8    TVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAA 67

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
            + LS  G L+F+G +L IS +F +I VRP +  N+            ++D   VLESW+ 
Sbjct: 68   DLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEG 127

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIYH 583
            VK  V+PE++RVEFWV ++GE YKL V F DV+ S+  CLG              PKI+ 
Sbjct: 128  VKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQ 187

Query: 584  KISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDIIN 763
            K + P+  +     RY I KE  EFLW+RTT+FS++KS+G+S +F W++ EG    DI  
Sbjct: 188  KFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFA 247

Query: 764  NFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPAV 943
            +FP Y+  + + +LEQ E  CS S LVPL++C S  KL YEILFQLNSLVHAQK+S  AV
Sbjct: 248  SFPYYKDLTEL-TLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKISLAAV 306

Query: 944  NSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHA---SMGHKPSSSERKLK 1114
            ++D+IEILS+L +D+A  IL+KL + KST Y+ ISFI+ Q H    ++ + P SS  +L 
Sbjct: 307  DTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSRLT 366

Query: 1115 NNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAVT 1294
            NN +MSCHR L+TP+KIY LGPE+ES NYVVKH+A + SDF+RV+FVEEDW KL S+A++
Sbjct: 367  NNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSNALS 426

Query: 1295 TSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKIS 1474
             SI +  F+ P+RT IYHRILS+L  GIVIG KRF FLAFSASQLRS+SVWMFASNDK+ 
Sbjct: 427  MSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVR 486

Query: 1475 AKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCFS 1654
              DIREWMGCF  IRSVSKCAARMGQLFSSS Q L VP QDVE IPDIE ++DG  YCFS
Sbjct: 487  VDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFS 546

Query: 1655 DGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            DGIGKISLSFAK V++KC L   P AFQIRYGGYKGV+ VDRNSF
Sbjct: 547  DGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSF 591


>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
          Length = 1119

 Score =  629 bits (1621), Expect = e-177
 Identities = 321/585 (54%), Positives = 414/585 (70%), Gaps = 3/585 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RVSNIP + IAKDL  FF+ ++GK +V+A +IF+EHKNWKS+GHG VQFET+      
Sbjct: 10   TVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQDKLHC 69

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LSE G L+F+G  L +  SF +I  RP +   R            +ND   VLE+W+ 
Sbjct: 70   LSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVLETWED 129

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIYH 583
            VK  ++PE+  +EFWV    E Y+L VQFGDV+  A  C                PK+Y 
Sbjct: 130  VKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVE-ATVCSLENQKSALLLKLKHAPKLYQ 188

Query: 584  KISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDIIN 763
            ++S P   +     RY I KE  EFLWVRTT+FS +KSIG S +  W+ ++G   SD+++
Sbjct: 189  RVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLLS 248

Query: 764  NFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPAV 943
            + P    +     L++V    S S+ VPL+R PSD KLPYEILFQLNSLV  QK+S  AV
Sbjct: 249  SLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAV 308

Query: 944  NSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHA---SMGHKPSSSERKLK 1114
            N D+IE+LS L LD+A  IL+K+ +++ST +E ++FI+ +LH    +  ++ SSS  +L 
Sbjct: 309  NPDLIEVLSKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRLV 368

Query: 1115 NNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAVT 1294
            N+ +MS HR L+TP+KIY LGPE+E+ NY+VK+FAEH SDF+RVTFVEEDWGKL  +AV+
Sbjct: 369  NHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAVS 428

Query: 1295 TSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKIS 1474
             S+EQGIF+KPYRT IYHRILS+L  GIVIGTKRF FLAFSASQLRS+SVWMFASN+ + 
Sbjct: 429  MSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVK 488

Query: 1475 AKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCFS 1654
            A+DIREWMGCFN IRS+SKCAARMGQLFS+S Q ++V  Q VE +PDIE ++DG+ YCFS
Sbjct: 489  AEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFS 548

Query: 1655 DGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            DGIGKIS +FA+ V++KC L H P AFQIRYGGYKGV+ VDRNSF
Sbjct: 549  DGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSF 593


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  625 bits (1613), Expect = e-176
 Identities = 316/586 (53%), Positives = 415/586 (70%), Gaps = 4/586 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RVSNIP T IAK L  FFE  +GK +V+A +IF+EHKNWKS+GHG VQFET  S    
Sbjct: 10   TVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSKLQS 69

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LSE GKL+F+G  L ++ SF +I  RP +   R            +ND   VLE+W++
Sbjct: 70   LSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLETWEN 129

Query: 404  VKVDVLPEKHRVEFWVVE-NGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIY 580
            VK  ++PE+  +EFWV    GE Y+L VQFGD+I +   C                PK+Y
Sbjct: 130  VKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCE-CSLEDEKTALLLKLKHAPKLY 188

Query: 581  HKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDII 760
             ++S P   +   + RY + +E  EFLWVRTT+FSA+KSIG S +  W++++G   SD++
Sbjct: 189  QRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLL 248

Query: 761  NNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPA 940
            +  P    +     L++V    S+S+LVPL   PSD KLPYEILFQLNSL+H  K+S  A
Sbjct: 249  SGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGA 308

Query: 941  VNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHA---SMGHKPSSSERKL 1111
            V +D+IE+LS L LD+A  IL+K+ +++ST +E + FI+ +LH    +  ++PSSS  +L
Sbjct: 309  VKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRL 368

Query: 1112 KNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAV 1291
             N  +MS HR L+TP+K+Y LGPE+E+ NY+VK+FA H SDF+RVTFVEEDWGKL  +A+
Sbjct: 369  VNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAI 428

Query: 1292 TTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKI 1471
            + S+EQGIF+KPYRT IYHRILS+L +G+VIG+KRF FLAFSASQLRS+SVWMFASN+ +
Sbjct: 429  SMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHV 488

Query: 1472 SAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCF 1651
             A+DIREWMGCFN IRSVSKCAARMGQLFS+S Q ++V    VE +PDIE ++DG+ YCF
Sbjct: 489  KAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCF 548

Query: 1652 SDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            SDGIGKIS +FA  V++KC L + P AFQIRYGGYKGV+ VDRNSF
Sbjct: 549  SDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSF 594


>ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
            gi|462407047|gb|EMJ12511.1| hypothetical protein
            PRUPE_ppa000513mg [Prunus persica]
          Length = 1118

 Score =  624 bits (1609), Expect = e-176
 Identities = 319/586 (54%), Positives = 418/586 (71%), Gaps = 4/586 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RVSNIP TV AK+LL F +  LG D+V+A+EI ++HKNWKS+G G VQF T+++ +  
Sbjct: 8    TVRVSNIPQTVTAKELLSFLQSKLGTDSVFAVEIISDHKNWKSRGFGRVQFTTLEAKSEA 67

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LS    L+F+  +L++S ++ +I  RP     R            + D  ++LESW+ 
Sbjct: 68   YSLSLQNGLVFKSESLRLSETYDDIIQRPVDPKRRLNGTVLHAGFMVKGDCMSMLESWEG 127

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIYH 583
            V+  V+PE+ RVEFWV    E YKL + F +++ S G  LG              P+I+ 
Sbjct: 128  VRAWVMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGEKVNALLLKLKFGPRIFR 187

Query: 584  KISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDIIN 763
            KIS P+  A     RY + K+ F+FLWVRTT+FS +KSIG S +F W+++E  S SD+  
Sbjct: 188  KISGPNVAARFSTDRYHVCKDDFDFLWVRTTDFSDMKSIGYSTSFCWEIEEEFSVSDVFE 247

Query: 764  NFPRYEGESRI-FSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPA 940
             FP Y+    +   L+  E+ CS S+ VPL++C SDSKLPYEILFQLN+LVH+QK+S  A
Sbjct: 248  CFPYYKDNDVVDLILDNGEKYCSPSETVPLVKCRSDSKLPYEILFQLNALVHSQKISLAA 307

Query: 941  VNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHA-SMGHK--PSSSERKL 1111
             +SD+IE LS LS+D+   +L KL + K+T Y+ +SF++ QLH     HK  PS  +R +
Sbjct: 308  TDSDLIEFLSGLSVDTTNVLLEKLHKRKTTCYDPLSFLKMQLHVLERNHKSRPSPYKRLM 367

Query: 1112 KNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAV 1291
            ++N +MSCHR LITP+KI  LGPE+E  NYVVK+FA + SDFMRVTFV+EDW KL ++A+
Sbjct: 368  EHN-VMSCHRVLITPSKICCLGPELEKSNYVVKNFAAYASDFMRVTFVDEDWSKLPANAI 426

Query: 1292 TTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKI 1471
            +TSI+QGIF+KP+RT IYHR+LS+L +GIVIG KRF FLAFSASQLRSSSVWMF+SND +
Sbjct: 427  STSIQQGIFAKPHRTGIYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSNDNV 486

Query: 1472 SAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCF 1651
             A+DIREWMGCF+ IRS+SKCAARMGQLFSSS Q L VP QDVE IPD+E S+DG+ YCF
Sbjct: 487  KAEDIREWMGCFSKIRSISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCF 546

Query: 1652 SDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            SDGIGKISLSFA+ V++KC L+  P AFQIRYGGYKGV+ VD  SF
Sbjct: 547  SDGIGKISLSFARKVAQKCGLDQTPSAFQIRYGGYKGVIAVDCRSF 592


>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| hypothetical protein
            POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score =  623 bits (1606), Expect = e-175
 Identities = 319/583 (54%), Positives = 412/583 (70%), Gaps = 1/583 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            ++RV+NIP T+ AK++L++    LGKD+V+A+EI T  KNW S+G G VQF +++  +  
Sbjct: 9    SVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEA 68

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LS   KL+ +  NLK+S ++ +I  RP +  NR            +     VLE W+ 
Sbjct: 69   LSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEG 128

Query: 404  VKVDVLPEKHRVEFWVVENGE-TYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIY 580
            V+   +PE+ R+EFW+    E  YKLVV+F D++ + GY L               P+IY
Sbjct: 129  VRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIY 188

Query: 581  HKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDII 760
             KIS P   +     RY   KE F+FLWVRTT+ SA+KSIG+S +F W++ EG   SD  
Sbjct: 189  QKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTF 248

Query: 761  NNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPA 940
             NFP Y+ +     LE  E+ CS+S+ VPLIRC SD KL YE+LFQLNSLVH QK+S  A
Sbjct: 249  RNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLNSLVHTQKISLAA 307

Query: 941  VNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHKPSSSERKLKNN 1120
            V+SD+I+IL +L++++A  IL+KL ++K T Y+ +SF+++ L  S+   P S    L  N
Sbjct: 308  VDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSLRESLSSPPKS----LTEN 363

Query: 1121 ELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAVTTS 1300
             +MSCHRALITP+KI+ LGPE E+ NYVVKHFA++ SDF+RVTFVEEDW KL ++A++TS
Sbjct: 364  NIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAISTS 423

Query: 1301 IEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKISAK 1480
            I++GIF+KP+RT IYHRILS+L +G VIG KRF FLAFSASQLRS+SVWMFASN+ + A+
Sbjct: 424  IQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAE 483

Query: 1481 DIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCFSDG 1660
            DIR+WMGCF+ IRSVSKCAARMGQLFSSS Q   VP QDVE IPDIE +TDGI YCFSDG
Sbjct: 484  DIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDG 543

Query: 1661 IGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            IGKISLSFAK V+ KC L H P AFQIRYGGYKGV+ VDRNSF
Sbjct: 544  IGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSF 586


>ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
            gi|590663258|ref|XP_007036162.1| RNA-dependent RNA
            polymerase 2 isoform 1 [Theobroma cacao]
            gi|508773406|gb|EOY20662.1| RNA-dependent RNA polymerase
            2 isoform 1 [Theobroma cacao] gi|508773407|gb|EOY20663.1|
            RNA-dependent RNA polymerase 2 isoform 1 [Theobroma
            cacao]
          Length = 1149

 Score =  622 bits (1605), Expect = e-175
 Identities = 316/592 (53%), Positives = 424/592 (71%), Gaps = 3/592 (0%)
 Frame = +2

Query: 23   AMAVKATTLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFET 202
            AM  +  TLRV+N+P T IAKDLL+F E  LG DTV+A+EI T+  NWKS+G G VQF T
Sbjct: 8    AMERERPTLRVTNVPQTAIAKDLLEFLEYKLGTDTVFAIEISTDRNNWKSRGFGRVQFAT 67

Query: 203  IDSVNTINHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFN 382
            +++ +  + LS    L+F+  +LK+S ++ +I  RP +  +R            Q+D   
Sbjct: 68   LEAKSKAHLLSLRNDLVFKSHSLKLSETYDDIIPRPIRADHRLDGGVLHVGFMVQDDYLR 127

Query: 383  VLESWKSVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXX 562
            VLE W+ V+  ++PE+ R+EFW+  NGE YKL V F DV+ + G C              
Sbjct: 128  VLERWEDVRGWLMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSSCNALLLRVK 187

Query: 563  XXPKIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGT 742
              P+IY K+S P+  + +   RY I KE+F+FLWVRTT+FS  K++G+S AF W+++   
Sbjct: 188  YAPRIYQKVSGPNIASKLRPDRYHICKENFDFLWVRTTDFSRTKAVGQSTAFYWEINAEL 247

Query: 743  SFSDIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQ 922
               D+ + F  Y  + +  +L+   +  S+ ++VPL++ PSDSKL YEILFQLNSLVH Q
Sbjct: 248  LTLDLFSCFSCYREDMKGLTLKGGGEFSSAPEIVPLVKGPSDSKLAYEILFQLNSLVHTQ 307

Query: 923  KLSFPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGH---KPS 1093
            K+S  +V++D+I+IL  L++++A  IL+K  ++ ST Y  +SF++  L  S  +   +P 
Sbjct: 308  KISIASVDTDLIDILRVLAVETAVMILQKFHKLLSTCYNPVSFVKENLPVSERNFQSRPL 367

Query: 1094 SSERKLKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGK 1273
            SS ++L ++ +MSCHRAL+TP+KIY LGPE+E+ NYVVK+FAE+ SDFMRV+FVEEDWGK
Sbjct: 368  SSFKRLIDHNVMSCHRALVTPSKIYCLGPELETSNYVVKNFAEYASDFMRVSFVEEDWGK 427

Query: 1274 LQSDAVTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMF 1453
            L ++A++TS++ GIFSKP+RT IYHRILSVL +GIVIG KRF FLAFSASQLRS+SVWMF
Sbjct: 428  LSANAISTSVQLGIFSKPFRTKIYHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMF 487

Query: 1454 ASNDKISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTD 1633
            ASNDK++A+D+REWMGCF  IRSVSKCAARMGQLFSSS   L VP QDV+ IPDIE ++D
Sbjct: 488  ASNDKVTAEDVREWMGCFKKIRSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSD 547

Query: 1634 GIKYCFSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            GI YCFSDGIGKISL FA+ V++KC L   P AFQIRYGGYKGV+ VDRNSF
Sbjct: 548  GINYCFSDGIGKISLPFAREVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSF 599


>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
            gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
            2 [Cucumis sativus]
          Length = 1117

 Score =  622 bits (1603), Expect = e-175
 Identities = 310/586 (52%), Positives = 413/586 (70%), Gaps = 3/586 (0%)
 Frame = +2

Query: 41   TTLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNT 220
            +TLRVSN+P + IA+DLL F    LG D+V+A+EIFTE KNWKS+G G VQF T+++   
Sbjct: 7    STLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAK 66

Query: 221  INHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWK 400
               LS    L+F   NL+ S    +I VRP    NR            + +R +VLESW+
Sbjct: 67   AMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWE 126

Query: 401  SVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIY 580
             VK  ++PE+ R+EFW+    E YKL V F +++ + G+CLG              P+IY
Sbjct: 127  GVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIY 186

Query: 581  HKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDII 760
             KIS  +  +   + RY +  E +++LWVRTTEFS ++S+G+S +F W+++E    SDI 
Sbjct: 187  KKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIF 246

Query: 761  NNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPA 940
            + FP Y+   +   LE  E+ CS+S++VPLI+    S L YE+ +QLNSLVH QK+S  A
Sbjct: 247  SCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSA 306

Query: 941  VNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHA---SMGHKPSSSERKL 1111
             N D+I+ L +L +D+A  +L++L Q+K   Y+ +SF++ QLH    +    P SS+++L
Sbjct: 307  ANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRL 366

Query: 1112 KNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAV 1291
             NN +M+C+R L+TP++IY LGPE+E+ NYVVK+F+ + SDFMRVTFVEEDW KL + AV
Sbjct: 367  SNN-VMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAV 425

Query: 1292 TTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKI 1471
            TTSI++GI SKPYRT IYHRI++VL +GIVIG KRF FLAFSASQLRS+SVWMFAS+D +
Sbjct: 426  TTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNL 485

Query: 1472 SAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCF 1651
             A++IR+WMGCF  IRS+SKCAARMGQLFSSS Q L VP +DVE IPDIE +TDGI YCF
Sbjct: 486  KAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCF 545

Query: 1652 SDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            SDGIGKISLSFA+ V+ KC + H+P AFQIRYGGYKGV+ VDRNSF
Sbjct: 546  SDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSF 591


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  619 bits (1596), Expect = e-174
 Identities = 314/587 (53%), Positives = 409/587 (69%), Gaps = 1/587 (0%)
 Frame = +2

Query: 32   VKATTLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDS 211
            ++  TLR++NIP T +AKDLL FFE  LG D+V+A+EI T+  NWKS+G G VQF    +
Sbjct: 6    IERPTLRLTNIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQA 65

Query: 212  VNTINHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLE 391
            ++    LS    L+F+  +LK+S ++ +I  RP +  +R             +D   VLE
Sbjct: 66   MSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLE 125

Query: 392  SWKSVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXP 571
             W+ V+  ++PE+ R+EFWV  +GE YKL   F D+  + G C                P
Sbjct: 126  RWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNALLLRVRYAP 185

Query: 572  KIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFS 751
            + Y K+S P+  +     RY I KE F+FLWVRTT+FS +KSIG+S +F W+ + G S S
Sbjct: 186  RTYRKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSIS 245

Query: 752  DIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLS 931
            D+    P Y  + +  SLE   +  S S++VPL++ PSDSKL YEILFQLN+LVH QK+S
Sbjct: 246  DMSTYLPCYREDIQSPSLEARGEFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKIS 305

Query: 932  FPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHK-PSSSERK 1108
              AV++D+I ILS L +++A  IL+KLR ++S  Y  +SF++ +L      + P S   +
Sbjct: 306  IAAVDTDLIGILSVLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNFRIPLSVSER 365

Query: 1109 LKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDA 1288
            LKN+ +MSCHRALITPTKIY LGPE+E+ NYVVK+FAE+ SDFMRVTFVEEDW KL ++A
Sbjct: 366  LKNHNVMSCHRALITPTKIYCLGPELETANYVVKNFAEYASDFMRVTFVEEDWSKLSANA 425

Query: 1289 VTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDK 1468
            ++T +  G+FS+P++T IY RILS+L NGIVIG KRF FLAFSASQLRS+SVWMFASND+
Sbjct: 426  ISTGVHLGVFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASNDE 485

Query: 1469 ISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYC 1648
            + A+DIREWMGCF  IRS+SKCA+RMGQLFSSS   L VP QDVE I DIE  TDGI YC
Sbjct: 486  VKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYC 545

Query: 1649 FSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            FSDGIGKISL FA+ V++KC L H+P AFQIRYGGYKGV+ VDRNSF
Sbjct: 546  FSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSF 592


>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
            vesca]
          Length = 1136

 Score =  615 bits (1585), Expect = e-173
 Identities = 308/584 (52%), Positives = 401/584 (68%), Gaps = 2/584 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RV+NIP T+ A +LL F E  LG D+V+A+EI ++HKNWKS+G+G +QF  +      
Sbjct: 11   TVRVTNIPCTITATELLHFLESALGPDSVFAVEIVSDHKNWKSRGYGRIQFTALRHKARA 70

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LS +  L F+  NL++  +  +I  RP    +R             ++  +VLESW+ 
Sbjct: 71   QSLSSSADLFFKSHNLRLFEAHDDIIPRPLDPRHRLNSTVLHAGFVVNDETMSVLESWEG 130

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIYH 583
            V+  V+PE+ RVEFWV   G+ YK+ + F +++ S G CLG              PKI+ 
Sbjct: 131  VRAWVMPERKRVEFWVWRVGDCYKMEIAFENIVESVGCCLGGDKVNALRLKLKFGPKIFR 190

Query: 584  KISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDIIN 763
            ++S P+  +     RY + KE F++LWVR T+FS +KSIG S AF W++ E  + + +  
Sbjct: 191  QLSGPNVASKFSADRYHVCKEDFDYLWVRCTDFSEMKSIGHSTAFCWEIQEDVAAAGVFT 250

Query: 764  NFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPAV 943
             FP +  +      E        S+ VPL++C +D K PYEILFQLN LVHAQK+S  AV
Sbjct: 251  TFPSFRKDVVDLMFEDGGDCLLVSETVPLVKCEADMKFPYEILFQLNVLVHAQKISLAAV 310

Query: 944  NSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFI--QRQLHASMGHKPSSSERKLKN 1117
             SD+IE    LS+D+A  +L KL+++K+T Y+ +SF+  Q QL      K  S  ++L  
Sbjct: 311  GSDLIEFFGGLSMDTANVLLEKLQKLKTTCYDPLSFVKVQLQLLERNSKKRLSPHQRLME 370

Query: 1118 NELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAVTT 1297
            + +MSCHR LITP+KIY LGPE+E  NYVVK+FA++ SDFMRVTFVEEDWGKL  +A++T
Sbjct: 371  HNVMSCHRVLITPSKIYCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNALST 430

Query: 1298 SIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKISA 1477
            SIEQG F+KP+RT IY RILS+L +GIVIG KRF FLAFSASQLRS+SVWMFASND + A
Sbjct: 431  SIEQGFFAKPFRTGIYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDSVKA 490

Query: 1478 KDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCFSD 1657
            +DIR+WMGCFN IRSVSKCAARMGQLFSSS Q L VPQ+DVE IPDIE +TDG+ YCFSD
Sbjct: 491  EDIRDWMGCFNKIRSVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSD 550

Query: 1658 GIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            GIGKISLSFA+ V++KC L   P AFQIRYGGYKGV+ VDRNSF
Sbjct: 551  GIGKISLSFARQVAQKCGLNDTPSAFQIRYGGYKGVIAVDRNSF 594


>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
          Length = 1119

 Score =  615 bits (1585), Expect = e-173
 Identities = 312/585 (53%), Positives = 407/585 (69%), Gaps = 3/585 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RVSNIP + IAKDL  FF+ ++GK +V+A +I +EHKNWKS+GHG VQFET+      
Sbjct: 10   TVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQDKLHC 69

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              L+E G L+F+G  L +  SF +I  RP +   R            + D   VLE+W+ 
Sbjct: 70   LSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVLETWED 129

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIYH 583
            VK  ++PE+  +EFWV    E Y+L VQFGDV      C                PK+Y 
Sbjct: 130  VKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTEGT-LCSVENQKSALLLKLKHAPKLYQ 188

Query: 584  KISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDIIN 763
            ++S P   +     RY I KE  EFLW+RTT+FS +KSIG S +  W+ ++G   SD+ +
Sbjct: 189  RVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLFS 248

Query: 764  NFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPAV 943
            + P    +     L++V    S S+ VPL+R PSD KLPYEILFQLNSLV  QK+S  A+
Sbjct: 249  SLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAI 308

Query: 944  NSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHA---SMGHKPSSSERKLK 1114
            N ++IE+LS L LD+A  IL+K+ +++S  ++ + FI+ +LH    +  ++PSSS  +L 
Sbjct: 309  NPNLIEVLSKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKNRPSSSYSRLV 368

Query: 1115 NNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAVT 1294
            N+ +MS HR L+TP+KIY LGPE+E+ NY+VK+FA H SDF+RVTFVEEDWGKL  +AV+
Sbjct: 369  NHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLFPNAVS 428

Query: 1295 TSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKIS 1474
             S+EQGIF+KPYRT IYHRILS+L  GIVIGTKRF FLAFSASQLRS+SVWMFASN+ + 
Sbjct: 429  MSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVK 488

Query: 1475 AKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCFS 1654
            A+DIREWMGCFN IRS+SKCAARMGQLFS+S Q ++V  Q VE +PDIE ++DG+ YCFS
Sbjct: 489  AEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVKLQHVEILPDIEVTSDGVSYCFS 548

Query: 1655 DGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            DGIGKIS +FA+ V++KC L H P AFQIRYGGYKGV+ VDRNSF
Sbjct: 549  DGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSF 593


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  615 bits (1585), Expect = e-173
 Identities = 312/587 (53%), Positives = 407/587 (69%), Gaps = 1/587 (0%)
 Frame = +2

Query: 32   VKATTLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDS 211
            ++  TLR+++IP T +AKDLL FFE  LG D+V+A+EI T+  NWKS+G G VQF    +
Sbjct: 6    IERPTLRLTHIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQA 65

Query: 212  VNTINHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLE 391
             +    LS    L+F+  +LK+S ++ +I  RP +  +R             +D   VLE
Sbjct: 66   KSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLE 125

Query: 392  SWKSVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXP 571
             W+ V+  ++PE+ R+EFWV  +GE YKL   F D+  + G C                P
Sbjct: 126  RWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNALLLRVRYAP 185

Query: 572  KIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFS 751
            +IY K+S P+  +     RY I KE F+FLWVRTT+FS +KSIG+S +F W+ + G S S
Sbjct: 186  RIYQKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSIS 245

Query: 752  DIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLS 931
            D+    P Y  + +  SLE   +  S S++VPL++ PSDSKL YEILFQLN+LVH QK+S
Sbjct: 246  DMSTYLPCYREDIQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKIS 305

Query: 932  FPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHK-PSSSERK 1108
              AV++D+I ILS L +++A  IL+KLR ++S  Y  +SF++ +L     ++ P S   +
Sbjct: 306  IAAVDTDLIGILSGLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNYRIPLSVSER 365

Query: 1109 LKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDA 1288
            LKN+ +MSC RALITPTKIY LGPE+E+ NYVVK+F E+ SDFMRVTFVEEDW KL ++A
Sbjct: 366  LKNHNVMSCRRALITPTKIYCLGPELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANA 425

Query: 1289 VTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDK 1468
            ++T +  G+FS+P++T IY RIL VL NGIVIG KRF FLAFSASQLRS+SVWMFASND+
Sbjct: 426  ISTGVHLGVFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDE 485

Query: 1469 ISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYC 1648
            + A+DIREWMGCF  IRS+SKCA+RMGQLFSSS   L VP QDVE I DIE  TDGI YC
Sbjct: 486  VKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYC 545

Query: 1649 FSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            FSDGIGKISL FA+ V++KC L H+P AFQIRYGGYKGV+ VDRNSF
Sbjct: 546  FSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSF 592


>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
          Length = 1115

 Score =  610 bits (1572), Expect = e-172
 Identities = 316/588 (53%), Positives = 402/588 (68%), Gaps = 2/588 (0%)
 Frame = +2

Query: 32   VKATTLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDS 211
            V+  T+RV+NIP T IA DL  F E  LG ++V+A+EI TE KNWKS+G G VQF ++ +
Sbjct: 5    VERPTVRVTNIPQTAIATDLQTFLESKLGPNSVFAVEISTERKNWKSRGFGRVQFTSLAA 64

Query: 212  VNTINHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLE 391
                  LS +   +F+  NL I  +  +I   P     R            ++DR  VL+
Sbjct: 65   KLVAQALSLSNNFVFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQ 124

Query: 392  SWKSVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXP 571
            SW+ V+   +PE++RVEFWV  + + YKL V F DV+ + GYCL               P
Sbjct: 125  SWEGVRAWAMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGP 184

Query: 572  KIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFS 751
            KIY +IS+P    +    RY I KE FEF WVRTT+F   KSIG S +  W   E    S
Sbjct: 185  KIYKRISRPSKFVAD---RYHICKEDFEFHWVRTTDFLESKSIGHSTSLCWDAKEDFLSS 241

Query: 752  DIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLS 931
            D   +FP Y    +   LE  ++ CS S+ VPLI+CP+ S L YEILFQLNSLVH QK+S
Sbjct: 242  DTFRSFPYYREGMKDLILEDSDEFCSVSETVPLIKCPAGSNLSYEILFQLNSLVHMQKIS 301

Query: 932  FPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGH--KPSSSER 1105
            F + ++D+IE   SL++D+A  +++KL ++KST Y+ +S  +   H    +   PSS+ +
Sbjct: 302  FASADADLIEYFGSLNIDTANAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKNPSSAIK 361

Query: 1106 KLKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSD 1285
            +L  N LMSCHRALITP+KIY +GPE+E+ NYVVK+FA + SDF+RVTFVEEDWGKL   
Sbjct: 362  RLTENSLMSCHRALITPSKIYCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPH 421

Query: 1286 AVTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASND 1465
             V+TSIEQGIF+KPYRT IY RILS+L NGI+IG KR+ FLAFSASQLRSS+VWMFASND
Sbjct: 422  VVSTSIEQGIFAKPYRTGIYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASND 481

Query: 1466 KISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKY 1645
             + A+DIREWMGCFN IRSVSKCAARMGQLFSSS+Q L VP QD+E IPD+E +TDGI Y
Sbjct: 482  NVKAEDIREWMGCFNKIRSVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTTDGIDY 541

Query: 1646 CFSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            CFSDGIGKIS SFA+ V++KC L+  P AFQIRYGGYKGV+ V+R+SF
Sbjct: 542  CFSDGIGKISSSFARQVAQKCGLKETPSAFQIRYGGYKGVIAVNRSSF 589


>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
            max]
          Length = 1121

 Score =  607 bits (1565), Expect = e-171
 Identities = 311/595 (52%), Positives = 409/595 (68%), Gaps = 4/595 (0%)
 Frame = +2

Query: 17   STAMAVKATTLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQF 196
            +T     + T+RVSNIP +  AKDLL F E  +G  TV+ALEIF+++ NWKS+G G VQF
Sbjct: 3    TTTTTTLSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQF 62

Query: 197  ETIDSVNTINHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDR 376
            ET+D+ +    LS+   L+F    L++S +  +I  RP  R +              + R
Sbjct: 63   ETLDARSRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNGVLYAGFVL---SDHR 119

Query: 377  FNVLESWKSVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXX 556
             +VLESW+ V   VLP + R++FWV  NG+ Y+L   F D++ S GYCLG          
Sbjct: 120  MSVLESWEGVAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLL 179

Query: 557  XXXX-PKIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLD 733
                 P+IY K +  D  A     RY   KE FEFLWVRTT+FS LKSIG S +F W++ 
Sbjct: 180  KMKFGPRIYKKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIV 239

Query: 734  EGTSFSDIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLV 913
            E     D+  +FP Y+   R  +LE  E+ CSS++ VPL++  S SKLPYE LFQLNSLV
Sbjct: 240  EEHLALDVFKSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLV 299

Query: 914  HAQKLSFPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHK-- 1087
            H QK+S  +V+ ++I++L+ L  ++   I  KL ++  T YE + F++ QLH     K  
Sbjct: 300  HTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKG 359

Query: 1088 -PSSSERKLKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEED 1264
             P SS+++L ++ +MSCHRALITPTKIY LGPE+E+ N+VVKHFA H SDFMR+TFVEE+
Sbjct: 360  LPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEEN 419

Query: 1265 WGKLQSDAVTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSV 1444
            W KL ++AV+T +++G+FSKP +T IY RIL++L +GIVIG+KRF FLAFSASQLRS+SV
Sbjct: 420  WNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSV 479

Query: 1445 WMFASNDKISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEA 1624
            W+FASND + A DIREWMGCFN+IRSVSKCAARMGQLFSSS Q  +V  QDVE IPD+E 
Sbjct: 480  WLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEV 539

Query: 1625 STDGIKYCFSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
             +DG+ YCFSDGIGKIS SFA+ V++K +L+H P AFQIRYGG+KGV+ VDR SF
Sbjct: 540  ISDGVSYCFSDGIGKISQSFARQVAQKLKLDHTPSAFQIRYGGFKGVIAVDRRSF 594


>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
          Length = 1122

 Score =  605 bits (1560), Expect = e-170
 Identities = 303/587 (51%), Positives = 414/587 (70%), Gaps = 5/587 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RV NIP +  AKDLL F E  +G  +V+ALEIF++H NWKS+G G VQFET ++ +  
Sbjct: 10   TVRVFNIPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKA 69

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LS   KL+F    L+++ S  +I  RP    NR              DR +V++SW+ 
Sbjct: 70   LSLSSNDKLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWEG 129

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXXPKIYH 583
            VK  V+PE++R++FWV  + + +KL + F +++   G+                 P+IY 
Sbjct: 130  VKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIYQ 189

Query: 584  KISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDIIN 763
            ++  P+  A     RY   KE F F+WVRTT+FS LKSIG S +F W+++E +S SD+  
Sbjct: 190  RMEGPNVSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVFR 249

Query: 764  NFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPAV 943
            +FP Y    +  SLE  E+ CS ++ VPL++C  D+KLPYE LFQLNSLVH QK+S  +V
Sbjct: 250  SFPLYRENLKDLSLEDGEEFCSPTETVPLVKCRLDTKLPYEALFQLNSLVHTQKISLASV 309

Query: 944  NSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHKPS---SSERKLK 1114
            + ++I++++SL  ++   I +KL ++ ST YE + F++ QLH     K S   SS+++L 
Sbjct: 310  DDELIDLIASLDDETKAVIFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQKRLA 369

Query: 1115 NNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAVT 1294
            +N +MSCHRALITP+KIY LGPE+E+ N+VVKHFA + SDFMR+TFVEEDW KL  +AV+
Sbjct: 370  DNNIMSCHRALITPSKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKLPINAVS 429

Query: 1295 TSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKIS 1474
            TS+++GIF+KP+RT IY R+L++L +GIVIG+KRF FLAFSASQLRS+SVW+FASNDK+ 
Sbjct: 430  TSLQKGIFAKPFRTDIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDKVK 489

Query: 1475 AKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCFS 1654
            A+DIREWMG F +IRSVSKCAARMGQLFSSSKQ  ++  QDV+ IPDIE ++DGI YCFS
Sbjct: 490  AEDIREWMGSFTNIRSVSKCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTSDGINYCFS 549

Query: 1655 DGIGKISLSFAKTVSKKCELE--HMPWAFQIRYGGYKGVLVVDRNSF 1789
            DGIGKISLSFAK +++K +L+   +P AFQIRYGGYKGV+ VDR+SF
Sbjct: 550  DGIGKISLSFAKQLAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSF 596


>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
          Length = 1131

 Score =  602 bits (1551), Expect = e-169
 Identities = 313/604 (51%), Positives = 420/604 (69%), Gaps = 22/604 (3%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+ VSNIP T IAKDLL F E  LGK++V+ALEI T+  NWKS+G G VQF ++D  +  
Sbjct: 5    TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
             +LS   KL+F   NLKIS +  +I  RP +  +R            + +R  VL++++ 
Sbjct: 65   QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124

Query: 404  VKVDVLPEKHRVEFWV--VENGE---------------TYKLVVQFGDVISSAGYCLGXX 532
            V+  +LP++ R+EFWV    NGE                +K+ + F DV+ + G+ L   
Sbjct: 125  VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184

Query: 533  XXXXXXXXXXXX-PKIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKS 709
                         PKIY K+S P   +   + RY I KE F+F WVRTT+FS  KSIG S
Sbjct: 185  ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244

Query: 710  FAFVWQLDEGTSFSDIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEI 889
             +F W++  G   SDI N FP Y+ +     LE+ E+ C++S++VPL++C     L +E+
Sbjct: 245  TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304

Query: 890  LFQLNSLVHAQKLSFPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLH 1069
            LFQLNSLVH QK+S  A ++++I+IL+ LS+++A  +L+KL ++KS  Y+ +SF++ QLH
Sbjct: 305  LFQLNSLVHNQKVSLVAADAELIQILNGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364

Query: 1070 ASMGHK----PSSSERKLKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDF 1237
              +G      P SS ++L ++ +MSC+RAL+TP KIY LGPE+E+ NYVVK+FA++ SDF
Sbjct: 365  V-LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDF 423

Query: 1238 MRVTFVEEDWGKLQSDAVTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFS 1417
            MRVTFVEEDW KL ++A++TSI++GIF+KPYRT IY RIL++L +GIVIG K + FLAFS
Sbjct: 424  MRVTFVEEDWSKLPANALSTSIQRGIFAKPYRTKIYSRILTILQDGIVIGDKHYEFLAFS 483

Query: 1418 ASQLRSSSVWMFASNDKISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQD 1597
            ASQLR++SVWMFASND++SA+D+REWMGCFN I SVSKCAARMGQLFSSSKQ L VP QD
Sbjct: 484  ASQLRNNSVWMFASNDEVSAEDVREWMGCFNKIHSVSKCAARMGQLFSSSKQTLVVPVQD 543

Query: 1598 VETIPDIEASTDGIKYCFSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVD 1777
            VE IPD+E ++DG  YCFSDGIGKISLSFA+ V++KC L H P AFQIRYGGYKGV+ VD
Sbjct: 544  VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603

Query: 1778 RNSF 1789
            RNSF
Sbjct: 604  RNSF 607


>ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
            gi|561028757|gb|ESW27397.1| hypothetical protein
            PHAVU_003G198500g [Phaseolus vulgaris]
          Length = 1119

 Score =  598 bits (1542), Expect = e-168
 Identities = 305/586 (52%), Positives = 405/586 (69%), Gaps = 4/586 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+ V NIP +  AKDLL F E  +G  TV+ALEIF+++ NWKS+G G VQFE +D+ +  
Sbjct: 11   TVSVFNIPRSATAKDLLHFIESKVGSSTVFALEIFSDNVNWKSRGAGRVQFEALDAKSRA 70

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LS+  +L+     L++S + ++I  RP  R                +DR +VLESW+ 
Sbjct: 71   LSLSQLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGLML---SDDRMSVLESWEG 127

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXX-PKIY 580
            V   V+P++ +++F V+ +G+ Y++ + F D++ S GYCLG               PKIY
Sbjct: 128  VAGLVVPQRRKLDFLVLHDGDCYRVEIFFEDILESHGYCLGAEGKLNALLLKLKFGPKIY 187

Query: 581  HKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDII 760
             K   PD      N RY   KE  EFLWVRTT+FSALKSIG S +F W++ E    SD+ 
Sbjct: 188  KKKMGPDVATKFRNDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEQLASDVF 247

Query: 761  NNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPA 940
             + P Y+   R   LE  E+ CSS++ VPL++C S SKLPYE LFQLNSLVH QK+S  +
Sbjct: 248  TSLPLYKENLRDLVLEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLAS 307

Query: 941  VNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHK---PSSSERKL 1111
            V+ ++I++L  L  +    I +KL Q+  T Y+ + F++ QLH     K   P SS+++L
Sbjct: 308  VDDELIDLLGGLDEEIRAVIFQKLHQMGFTCYDPLKFVKTQLHVLSNKKRSQPLSSQKRL 367

Query: 1112 KNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAV 1291
             +N +MSCHRAL+TPTKIY LGPE+E+ N+VVKHFA   SDFMR+TFVEE+W KL + AV
Sbjct: 368  IDNNIMSCHRALVTPTKIYCLGPELETSNHVVKHFASCASDFMRITFVEENWNKLPNYAV 427

Query: 1292 TTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKI 1471
            +T +++GIFSKP++T IY RIL++L +GIVIG+KRF FLAFSASQLRS+SVW+FASND +
Sbjct: 428  STGVQKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNV 487

Query: 1472 SAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCF 1651
             A DIREWMGCFN+IRSVSKCAARMGQLFSSS Q  +V  QDVE IPDIE ++DG+ YCF
Sbjct: 488  KATDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVAPQDVEVIPDIEVTSDGVSYCF 547

Query: 1652 SDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            SDGIGKIS SF + V++K +L+H P AFQIR+GGYKGV+ VDR+SF
Sbjct: 548  SDGIGKISQSFGRQVAQKLKLDHTPSAFQIRFGGYKGVITVDRHSF 593


>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score =  598 bits (1542), Expect = e-168
 Identities = 303/586 (51%), Positives = 405/586 (69%), Gaps = 4/586 (0%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RVSNIP +  AKDLL F E  LG  TV+ALEIF+++ NWKS+G G VQFET+D+ +  
Sbjct: 11   TVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRA 70

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              LS+  +L+F    L++S +  +I  RP  R                + R +VLESW+ 
Sbjct: 71   LSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGVLYAGFML---SDHRMSVLESWEG 127

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXX-PKIY 580
            +   VLP++ R++FWV  NG+ Y+L   F D++ S GYCLG               P+IY
Sbjct: 128  IAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIY 187

Query: 581  HKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDII 760
             K +  D  A+    RY   KE FEFLWVRTT+FS LKSIG S +F W++ E    SD+ 
Sbjct: 188  KKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVF 247

Query: 761  NNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPA 940
             +FP Y+   R  +LE  E+ CS ++ VPL++  + SKLPYE +FQLNSLVH QK+S  +
Sbjct: 248  TSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLAS 307

Query: 941  VNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHKPS---SSERKL 1111
            V+ ++I++L+ L  ++   + +KL ++  T YE + F++ QLH     K     S + +L
Sbjct: 308  VDDELIDLLADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRL 367

Query: 1112 KNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAV 1291
             ++ +MSCHRALITPTKIY LGPE+E+ N+VVKHFA   SDFMR+TFVEE+W KL ++AV
Sbjct: 368  TDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAV 427

Query: 1292 TTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKI 1471
            +T +++GIFSKP +T IY RIL++L +GIVIG+KRF FLAFSASQLRS+SVW+FASND +
Sbjct: 428  STGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNL 487

Query: 1472 SAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCF 1651
             A DIREWMGCFN+IRSVSKCAARMGQLFSSS Q  +V  +DVE IPDIE ++DG+ YCF
Sbjct: 488  KAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCF 547

Query: 1652 SDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            SDGIGKIS  FA+ V++K  L+H P AFQIRYGG+KGV+ +DR+SF
Sbjct: 548  SDGIGKISQCFARQVAQKLNLDHTPSAFQIRYGGFKGVIAIDRHSF 593


>gb|AHL27587.1| RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza]
          Length = 972

 Score =  591 bits (1524), Expect = e-166
 Identities = 307/589 (52%), Positives = 412/589 (69%), Gaps = 7/589 (1%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T++V+NIP   IAKDL  F E +LGK TV+A+EIFTE +NWKS+GHG VQFE+ ++    
Sbjct: 14   TVKVTNIPPIAIAKDLQAFLESVLGKGTVFAVEIFTERENWKSRGHGRVQFESPEAKIEA 73

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQ---RYNRXXXXXXXXXXXXQNDRFNVLES 394
              LS   K +F+G  L ++ S +EI +RP     R               + D    LES
Sbjct: 74   LSLSHHRKFLFKGFYLSVTHSLEEIIIRPVDPIYRVGDGGGLVLFAGIMIRADCMGTLES 133

Query: 395  WKSVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXX-- 568
            W  +K+  +PE+ ++ F+V   GE+YKL VQFGDV+ S G CLG                
Sbjct: 134  WNGMKLWFMPERKKIHFFVDHGGESYKLEVQFGDVLESRGCCLGGGDMKVDAILLKLRHA 193

Query: 569  PKIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSF 748
            PKI+ K+S P   +     RY I KE ++F+WVRTT+FS++KSIG   +  W+++EG S 
Sbjct: 194  PKIFKKVSGPKIASRFTTDRYHICKEDYDFIWVRTTDFSSMKSIGYLSSLCWEIEEGFSN 253

Query: 749  SDIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKL 928
             D+  + P Y  E    + E+V+ +  +SDLVP+++  S  ++ YE+LFQLNSLVH QKL
Sbjct: 254  LDLYTSLPYYTKEVTELAFEEVQFN-HASDLVPIVKNDSVFQVAYEVLFQLNSLVHCQKL 312

Query: 929  SFPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHKPS--SSE 1102
            S  AVN+D+ +ILS L +D+A  IL+++ ++ ST YE  SF++ Q   +  ++ +  S+E
Sbjct: 313  SLAAVNTDLFQILSRLDMDTALLILKEMHKLHSTCYEPKSFVENQPSITTHNRKNLPSAE 372

Query: 1103 RKLKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQS 1282
            R +++N +MSCHR L+TPTKI+ LGPE+ES NY+VK+FA++ SDFMRVTFV+EDWG+L  
Sbjct: 373  RLIEHN-IMSCHRVLVTPTKIFCLGPELESSNYIVKNFADYASDFMRVTFVDEDWGRLSP 431

Query: 1283 DAVTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASN 1462
             AV+TSI +GIF+KPYRT IY RILSVL +G+VIG K+F FLAFSASQLRS+SVWMFASN
Sbjct: 432  GAVSTSIMKGIFAKPYRTDIYRRILSVLQDGLVIGDKKFEFLAFSASQLRSNSVWMFASN 491

Query: 1463 DKISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIK 1642
            D + A+DIREWMGCFN IRS+SKCAARMGQLFSSS Q L V  +DVE IP+IE  +DG+K
Sbjct: 492  DHVKAEDIREWMGCFNKIRSISKCAARMGQLFSSSMQTLKVIPRDVELIPEIEVVSDGVK 551

Query: 1643 YCFSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
            +CFSDGIGKIS+ FA+ V +K  L H+P AFQIRYGGYKGV+ V+R+SF
Sbjct: 552  HCFSDGIGKISIPFAREVVRKLGLSHIPSAFQIRYGGYKGVIAVNRHSF 600


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score =  588 bits (1517), Expect = e-165
 Identities = 296/588 (50%), Positives = 413/588 (70%), Gaps = 6/588 (1%)
 Frame = +2

Query: 44   TLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNTI 223
            T+RV+NIP T  A DLL++ E  +G+ +V+ALEIF+++ NWKS+G G VQFET+++ +  
Sbjct: 10   TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKA 69

Query: 224  NHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQNDRFNVLESWKS 403
              L+E  KL+     L +  S  +I  RP+   NR              D  +VL+SW+ 
Sbjct: 70   LTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEG 129

Query: 404  VKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXX-PKIY 580
            V+  V+PE+ R++FWV    + +KL + F +++   GYC                 P+IY
Sbjct: 130  VRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIY 189

Query: 581  HKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFSDII 760
             K++ P+  A   + RY   KE+FEF+WVRTT+FS LKSIG S +F W++ E +  SD+ 
Sbjct: 190  QKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVF 249

Query: 761  NNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPSDSKLPYEILFQLNSLVHAQKLSFPA 940
             +FP Y    +  SLE  E+ CS ++ VPL++C  DSKLPYE LFQLNSLVH QK+S  +
Sbjct: 250  RSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLAS 309

Query: 941  VNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHASMGHKPS---SSERKL 1111
            VN ++I++L+SL  ++   I +KL ++ ST YE + +++ QLH     K S   S +++L
Sbjct: 310  VNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRL 369

Query: 1112 KNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKLQSDAV 1291
             +N +MSCHRALITP+KIY LGPE+E+ N+VVKHFA + SDFMR+TFVEEDW KL ++A+
Sbjct: 370  VDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAI 429

Query: 1292 TTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFASNDKI 1471
            + ++++G+FS+P RT IY R+L++L +GI+IG+KRF FLAFSASQLRS+SVW+FASNDK+
Sbjct: 430  SITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKV 489

Query: 1472 SAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDGIKYCF 1651
             A DIREWMG FN+IRSVSKCAARMGQLFSSS+Q  ++  QDV+ IPDIE ++DGI YCF
Sbjct: 490  KAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCF 549

Query: 1652 SDGIGKISLSFAKTVSKKCELE--HMPWAFQIRYGGYKGVLVVDRNSF 1789
            SDGIGKIS SFA+ +++K +L+   +P AFQIRYGGYKGV+ VDR+SF
Sbjct: 550  SDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSF 597


>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
            gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
            2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1134

 Score =  574 bits (1480), Expect = e-161
 Identities = 295/591 (49%), Positives = 397/591 (67%), Gaps = 8/591 (1%)
 Frame = +2

Query: 41   TTLRVSNIPLTVIAKDLLKFFEDILGKDTVYALEIFTEHKNWKSKGHGLVQFETIDSVNT 220
            +TL++SN+P T++A +LL+F E  LG+DTV+ALEI T   NWK +    VQF T++  + 
Sbjct: 10   STLKISNVPQTIVADELLRFLELNLGEDTVFALEILTTRDNWKPRDFARVQFTTLEVKSR 69

Query: 221  INHLSETGKLIFQGINLKISPSFKEISVRPSQRYNRXXXXXXXXXXXXQND-RFNVLESW 397
               LS   KL+F+  NL++S ++ +I  RP     R             ++ RF  LE W
Sbjct: 70   AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRRRLDDIVLTVGFPESDEKRFCALEKW 129

Query: 398  KSVKVDVLPEKHRVEFWVVENGETYKLVVQFGDVISSAGYCLGXXXXXXXXXXXXXX--P 571
              V+  +L EK R+EFWV ENGE YK+ V+F D++ +   C+                 P
Sbjct: 130  DGVRCWILEEKRRLEFWVWENGECYKIEVRFEDIVETLCCCVNGDASETNAFLLKLKYGP 189

Query: 572  KIYHKISKPDNGASVGNIRYSIFKESFEFLWVRTTEFSALKSIGKSFAFVWQLDEGTSFS 751
            K++ ++S P       + RY   KE F+F+W+RTT+FS LKSIG S  F  ++  G++  
Sbjct: 190  KVFKRVSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTCFCLEVHNGSTML 249

Query: 752  DIINNFPRYEGESRIFSLEQVEQSCSSSDLVPLIRCPS-DSKLPYEILFQLNSLVHAQKL 928
            D+ +  P Y  E+   +    +   S S +VPL+       + PYEILFQLN+LVHAQK+
Sbjct: 250  DVFSGLPYYREETLSLTFVDGKNFASVSQIVPLLNAAILGLEFPYEILFQLNALVHAQKI 309

Query: 929  S-FPAVNSDVIEILSSLSLDSATRILRKLRQVKSTSYEVISFIQRQLHA---SMGHKPSS 1096
            S F A N ++I I   LSL++   IL+KL Q  S  Y+ + F++ Q+ +    M H P+S
Sbjct: 310  SLFAASNMELINIFRGLSLETTLVILKKLHQQSSICYDPLFFVKTQMQSVVKKMKHSPAS 369

Query: 1097 SERKLKNNELMSCHRALITPTKIYLLGPEVESWNYVVKHFAEHVSDFMRVTFVEEDWGKL 1276
            + ++L    +MSC RA +TP+KIYLLGPE+E+ NYVVK+FAEHVSDFMRVTFVEEDW KL
Sbjct: 370  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 429

Query: 1277 QSDAVTTSIEQGIFSKPYRTSIYHRILSVLSNGIVIGTKRFAFLAFSASQLRSSSVWMFA 1456
             ++A+T + ++G F KP+RT+IY+R+LS+L  GI +G KRF FLAFSASQLR +SVWMFA
Sbjct: 430  PANALTVNSKEGYFVKPFRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 489

Query: 1457 SNDKISAKDIREWMGCFNSIRSVSKCAARMGQLFSSSKQALDVPQQDVETIPDIEASTDG 1636
            SN+KI A+DIREWMGCF  IRS+SKCAARMGQLFS+S+Q L+V  QDVE IPDIE +TDG
Sbjct: 490  SNEKIKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNVRAQDVEQIPDIEVTTDG 549

Query: 1637 IKYCFSDGIGKISLSFAKTVSKKCELEHMPWAFQIRYGGYKGVLVVDRNSF 1789
              YCFSDGIGKISL+FAK V++KC L H+P AFQIRYGGYKGV+ VDR+SF
Sbjct: 550  ADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSF 600