BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00043055
         (868 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein A...    55   2e-08
ref|XP_004305091.1| PREDICTED: ribonuclease HI-like [Fragaria ve...    57   2e-06
ref|XP_004301407.1| PREDICTED: putative ribonuclease H protein A...    41   9e-06

>ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 727

 Score = 54.7 bits (130), Expect(2) = 2e-08
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
 Frame = -1

Query: 541 SNAGYGIVIRNALGYQGARGG-NCRVSSPEEAEALAVFEATKWAREKALTNFSLEGDCKN 365
           S+A  G +IRN+ G        N   +S    EA A+ ++   A+ + LT   +EGD K 
Sbjct: 580 SSAACGTIIRNSEGVPIITSSKNIGKASVPTTEATALRDSILIAKNRGLTRIIVEGDSKI 639

Query: 364 VMDYLNGMNTSITWQVQRLLDEVKKMVAEVTNF*GYTFIHRSGNSSADLLAKEARSSSFS 185
           ++D +NG   S  W++Q++++++K +  E      +  I+R  N +AD       S +  
Sbjct: 640 IIDVVNG-KISTPWRLQQIIEDIKNLAQEFQEI-CFNHIYREANFAADATESLGHSITGR 697

Query: 184 QQTWVHVPQVISQSLLKEQ 128
           +  +  +P+ I + +L +Q
Sbjct: 698 RDWFQPLPRSIGRMILFDQ 716



 Score = 30.8 bits (68), Expect(2) = 2e-08
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
 Frame = -2

Query: 864 SDSFLDHYNEWTRDDSTSLS-LEVAATKVWHILKERCDRVFSNKTXXXXXXXXXXQRFIQ 688
           SD+FL+  N + R  + + +  E   T  W I K R D  F N +             I+
Sbjct: 480 SDTFLNKLNLFLRKRNYNKNDFEKILTICWMIWKARNDASFRNISTSPLTIISVAAS-IE 538

Query: 687 FWTPSRNVDQDSATVIIPSSTLPLPNRQWTIPLGDTFKINMDGAWTSS 544
                 N++    +   PS+       +W  P   TFK+N DG+ TSS
Sbjct: 539 KGFKENNMNCRVGSFKTPSAI------KWQPPPASTFKVNFDGSVTSS 580


>ref|XP_004305091.1| PREDICTED: ribonuclease HI-like [Fragaria vesca subsp. vesca]
          Length = 180

 Score = 57.0 bits (136), Expect(2) = 2e-06
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
 Frame = -1

Query: 541 SNAGYGIVIRNALGYQGARGGNC--RVSSPEEAEALAVFEATKWAREKALTNFSLEGDCK 368
           ++A  G +IR+A G   +   N   R S P  AEA+A+ +    A+EK  TN  +EGD K
Sbjct: 33  NSAACGFIIRDANGRPISAASNPIGRASVPI-AEAVALRDGLLKAKEKGFTNVEVEGDSK 91

Query: 367 NVMDYLNGMNTSITWQVQRLLDEVKKMVAEVTNF*GYTFIH--RSGNSSADLLAKEARSS 194
            V+D +NG      W++ +L++++K +    T+F   TF H  R  N  AD +A    + 
Sbjct: 92  LVIDAVNG-RFEPPWRLIKLVEDIKTL---ATSFDSITFRHVLREANFVADAIANLGHAC 147

Query: 193 SFSQQTWVHVPQVISQSLLKEQANL 119
           +        VP  +S++LL +  N+
Sbjct: 148 NSPMYLNDRVPSEVSKALLFDIVNV 172



 Score = 22.3 bits (46), Expect(2) = 2e-06
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 606 QWTIPLGDTFKINMDGAWTSS 544
           +W  P     KIN DG+ TS+
Sbjct: 13  KWQAPPNSFVKINFDGSVTSN 33


>ref|XP_004301407.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 612

 Score = 41.2 bits (95), Expect(2) = 9e-06
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -1

Query: 535 AGYGIVIRNALGYQ-GARGGNCRVSSPEEAEALAVFEATKWAREKALTNFSLEGDCKNVM 359
           AG  +V+RN  G         C  SS  EAEA A   A   A++ +     +E DC+ ++
Sbjct: 463 AGLRVVVRNPHGSLINGSSQCCCASSAIEAEAQAAVTALSLAKKYSHLPTQIESDCQELV 522

Query: 358 DYLNGMNTSITWQVQRLLDEVKK 290
           + +NG++    W++  L+ ++++
Sbjct: 523 NIINGVDLGKNWRISPLIAQLQR 545



 Score = 35.4 bits (80), Expect(2) = 9e-06
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = -2

Query: 648 TVIIPS-------STLPLPNRQWTIPLGDTFKINMDGAWTSSDQM 535
           T IIPS       STL  PN  W  P   + KIN D AWTS   +
Sbjct: 418 TAIIPSQDHPTTISTLENPNTTWKKPPVGSIKINFDAAWTSDTNL 462