BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00037703
         (1592 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   543   e-152
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   525   e-146
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   519   e-144
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   514   e-143
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   513   e-143
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   506   e-140
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   501   e-139
ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatul...   501   e-139
ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phas...   501   e-139
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   499   e-138
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   499   e-138
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   498   e-138
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   497   e-138
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   496   e-137
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl...   495   e-137
ref|XP_007017901.1| Pseudouridine synthase family protein isofor...   494   e-137
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   494   e-137
ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phas...   492   e-136
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   491   e-136
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...   488   e-135

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  543 bits (1400), Expect = e-152
 Identities = 279/390 (71%), Positives = 319/390 (81%), Gaps = 8/390 (2%)
 Frame = +3

Query: 99   STEEDNFVSKSG---NYAGAKLEEI-----NGGEKLRLDTWISSRMSGVSRARVQSSIKS 254
            ST+E   VS SG   NYAG +LEE      +   KLRLD+WISSR+ G+SRARVQSSI+S
Sbjct: 43   STDEP-LVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRS 101

Query: 255  GLVKVNGRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHM 434
            GLV VN R+V+KVSHVIRAGDKVNCTISE+QPLRAEPEDIPL+IV+ED+HVLVVNKPAHM
Sbjct: 102  GLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHM 161

Query: 435  VVHPAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNS 614
            VVHPAPGN +GTLV+GILHHC LPTVALP+ D  SE +DISD+E   F + QN       
Sbjct: 162  VVHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEEDDISDDEFNSFAAGQNCG----- 214

Query: 615  RSSAALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPAS 794
             +    IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH+IHRVY+SLT+GVP+P S
Sbjct: 215  -TCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLS 273

Query: 795  GRVDIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTH 974
            GRV+I +GRD NNR+RMTAV G +N+ QAR+AASRY+VIE+LA G SA+VEWRLETGRTH
Sbjct: 274  GRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTH 333

Query: 975  QIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALG 1154
            QIRAHAKYLG PLLGDEVYGGTK MALSLLR + PS+ H  L +LV +  RPCLHA ALG
Sbjct: 334  QIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALG 393

Query: 1155 FKHPHTGKDMKFSCPPPADFTEILSLLQNI 1244
            F HP TGK++ FSC PP DF EILS L+ I
Sbjct: 394  FNHPKTGKNVHFSCQPPEDFAEILSWLRKI 423


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508723228|gb|EOY15125.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  525 bits (1352), Expect = e-146
 Identities = 268/382 (70%), Positives = 314/382 (82%), Gaps = 5/382 (1%)
 Frame = +3

Query: 135  NYAGAKLEEINGGEK---LRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSHVI 305
            +Y G +LEE   G K   LRLD+WISSR+ G+SRARVQSSIKSGLV VNGRVV+KVSH +
Sbjct: 62   SYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGL 121

Query: 306  RAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSGI 485
            R GDKVNC ISE+QPLRAEPEDIPL+IV+EDDHVLVVNKP HMVVHPAPGN TGTLV+GI
Sbjct: 122  RHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGI 181

Query: 486  LHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIVHRLDK 665
            LHHC LPTVAL + ++ S+TED+SD++ EGF             S+AA +RPGIVHRLDK
Sbjct: 182  LHHCSLPTVALSEKEVLSDTEDVSDDD-EGF---------CYGASAAASVRPGIVHRLDK 231

Query: 666  GTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNRLRM 845
            GTSGLLVVAKDEHSH+HLSEQFK HTI RVY+SLT GVPSP++GRVDI+IGRD+NNR+RM
Sbjct: 232  GTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRM 291

Query: 846  TAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDE 1025
             AV G N+  +AR+AASRY+VIEVLAGG SA+++WRLETGRTHQIRAHAKY+G PLLGDE
Sbjct: 292  IAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDE 351

Query: 1026 VYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKFSCPPP 1205
            VYGGTK MALSLLR +TP N ++ L  LV + +RP LHA  LGF+HPH+ + M FSC PP
Sbjct: 352  VYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPP 411

Query: 1206 ADFTEILSLLQNI--EKLSFKK 1265
             DF EILS L+ I  EK +FK+
Sbjct: 412  PDFAEILSDLRKIGTEKPTFKE 433


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  519 bits (1337), Expect = e-144
 Identities = 263/378 (69%), Positives = 305/378 (80%), Gaps = 4/378 (1%)
 Frame = +3

Query: 135  NYAGAKLEEI--NGGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSHVIR 308
            NYAG +LEE       KLRLD WISSR+ G+SRARVQSSI+SGLV +NG+VV+KVSH ++
Sbjct: 54   NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113

Query: 309  AGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSGIL 488
             GD VNCTISE+QPLRAE EDIPL+IV+EDD+VLVVNKPAHMVVHPAPGN TGTLV+GIL
Sbjct: 114  GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173

Query: 489  HHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIVHRLDKG 668
            HHC LPT+A  + + FS+ EDISD+E            + +S  S A IRPGIVHRLDKG
Sbjct: 174  HHCSLPTLASSNQEAFSDAEDISDDE------------EFSSSISGASIRPGIVHRLDKG 221

Query: 669  TSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNRLRMT 848
            TSGLLVVAKDEHSHAHLSEQFKLHTI RVY+SLT+GVPS +SGR+++ I RD NNR+RM 
Sbjct: 222  TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 281

Query: 849  AVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDEV 1028
            A+ GSN   QAR+AASRY+VIE+LAGG SA+VEWRLETGRTHQIRAHAKY+G PLLGDEV
Sbjct: 282  AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEV 341

Query: 1029 YGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKFSCPPPA 1208
            YGGTK MA SLL+ +T    H  + +LV   QRPCLHA ALGF HPHT + ++FSCPPPA
Sbjct: 342  YGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPA 401

Query: 1209 DFTEILSLLQNI--EKLS 1256
            DF EILS L+ I  EKLS
Sbjct: 402  DFAEILSQLREIGTEKLS 419


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  514 bits (1324), Expect = e-143
 Identities = 269/396 (67%), Positives = 315/396 (79%), Gaps = 7/396 (1%)
 Frame = +3

Query: 99   STEEDNFVSKSG---NYAGAKLEEINGGE--KLRLDTWISSRMSGVSRARVQSSIKSGLV 263
            ST E N     G   NY+G KLEE    +  K RLD+WISSR+SG+SRARVQSSIKSGLV
Sbjct: 62   STREPNSNQNPGQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLV 121

Query: 264  KVNGRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVH 443
             VNG+V++KVSH ++AGDKVNC ISE+QPLRAEPE+IPL+IV+ED++VLVVNKPAHMVVH
Sbjct: 122  SVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVH 181

Query: 444  PAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSS 623
            PAPGN TGTLV+GILHHC LPTV+    ++ S  ED+SD++ EG          L S S 
Sbjct: 182  PAPGNATGTLVNGILHHCSLPTVS--SQEVLSGAEDVSDDDDEG----------LCSSSY 229

Query: 624  AALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRV 803
            AA +RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTI RVYVSLT GVP+P +GR+
Sbjct: 230  AASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRI 289

Query: 804  DIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIR 983
            D+ IGRD +NR+RM A+    N  QAR+AASRY+VIE+LAGG SA+VEWRLETGRTHQIR
Sbjct: 290  DVPIGRDVSNRIRMAAI-VEPNRGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIR 348

Query: 984  AHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKH 1163
            AHAKY+G PLLGDEVYGGT+ MALSLLR +T  + H  L   +   +RPCLHA ALGF H
Sbjct: 349  AHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTH 408

Query: 1164 PHTGKDMKFSCPPPADFTEILSLLQNI--EKLSFKK 1265
            P TGK++ FSCPPP DFTEILS L+ +  EKLSFK+
Sbjct: 409  PCTGKEIHFSCPPPPDFTEILSQLREMGTEKLSFKE 444


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  513 bits (1322), Expect = e-143
 Identities = 255/374 (68%), Positives = 305/374 (81%), Gaps = 4/374 (1%)
 Frame = +3

Query: 135  NYAGAKLEEINGGE----KLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSHV 302
            NYAG +LEEI  GE    KLRLDTWISSR++G+SRARVQSSIK+GLV VNGR+V+KVS  
Sbjct: 63   NYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQSSIKAGLVHVNGRLVDKVSFN 122

Query: 303  IRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSG 482
            +RAGD++ CTI+E+Q LRA PE+IPL+IV+ED+H+LV+NKPAHMVVHPAPGN +GTLV+G
Sbjct: 123  VRAGDEIKCTIAELQKLRAVPENIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNG 182

Query: 483  ILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIVHRLD 662
            ILHHC LP V    ++  S+TED SD+EL GF S   S E L+SR S A IRPGIVHRLD
Sbjct: 183  ILHHCNLPNVEFSKDEALSDTED-SDDELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLD 241

Query: 663  KGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNRLR 842
            KGTSGLLVVAKDEHSH  LSEQFKL TI RVY+SLT GVP+P +GRV++ +GRD NNRLR
Sbjct: 242  KGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLR 301

Query: 843  MTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGD 1022
            MTAV G   + +AR+AASRY+VIE+LAGG+ A+VEW+LETGRTHQIRAHA+YLG PLLGD
Sbjct: 302  MTAVAGPLTSMKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGD 361

Query: 1023 EVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKFSCPP 1202
            EVYGGTK M LSLLR +T  + H  + ++V +  RPCLHA  LGF+HPHTG+ + FSC P
Sbjct: 362  EVYGGTKNMVLSLLRPRTTPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEP 421

Query: 1203 PADFTEILSLLQNI 1244
            P DF EILS L+ I
Sbjct: 422  PVDFNEILSQLRRI 435


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  506 bits (1303), Expect = e-140
 Identities = 254/385 (65%), Positives = 311/385 (80%), Gaps = 8/385 (2%)
 Frame = +3

Query: 135  NYAGAKLEEIN----GGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSHV 302
            N++G +LEE      G  KLRLD WISSR++G+SRARVQSSIKSGLV VNGRVV+KVS  
Sbjct: 63   NFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKVSFN 122

Query: 303  IRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSG 482
            +++GD++ CTI+E+Q LRA P++IPL+IV+ED+HVLV+NKPAHMVVHPAPGN +GTLV+G
Sbjct: 123  VKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNG 182

Query: 483  ILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAAL--IRPGIVHR 656
            ILHHC LP V    ++  S+TED SD+E   + S  +S E LNSR S A   IRPGIVHR
Sbjct: 183  ILHHCNLPNVEFSKDEALSDTED-SDDEFNSYISLASSCEGLNSRLSVASNSIRPGIVHR 241

Query: 657  LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNR 836
            LDKGTSGLLVVAKDEHSH  LSEQFK  TI R+YVSLT GVP+P +GRV++ +GRDTNNR
Sbjct: 242  LDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNR 301

Query: 837  LRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLL 1016
            +RMTAV G  N+K+AR AASRY+VIE+LAGG+ ++VEW+LETGRTHQIRAHAKYLG PLL
Sbjct: 302  IRMTAVTGPVNSKKARYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLL 361

Query: 1017 GDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKFSC 1196
            GDE+YGGTK M LSLLR +TP + H+ + ++V +  RPCLHA+ LGF+HPHTG+ + FSC
Sbjct: 362  GDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSC 421

Query: 1197 PPPADFTEILSLLQNI--EKLSFKK 1265
             PPADF EILS L+ I  E +SF K
Sbjct: 422  EPPADFAEILSQLRRIGSETVSFTK 446


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
            lycopersicum]
          Length = 436

 Score =  501 bits (1291), Expect = e-139
 Identities = 249/388 (64%), Positives = 308/388 (79%), Gaps = 2/388 (0%)
 Frame = +3

Query: 90   TDESTEEDNFVSKSGNYAGAKLEEINGGE--KLRLDTWISSRMSGVSRARVQSSIKSGLV 263
            +D     D    +  NY+G KLEE    +  KLRLD+W+SSR+ GVSRARVQSSI+SGLV
Sbjct: 39   SDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLV 98

Query: 264  KVNGRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVH 443
             VNGRV +KVSH+++ GDKV+CTI++++PLRAEPEDIPL+IV+ED+HVLVVNKPAHMVVH
Sbjct: 99   SVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVH 158

Query: 444  PAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSS 623
            PAPGN TGTLVSGILHHC LPTV+ P  ++ S+ ED SD+EL  F  +++ + D +S   
Sbjct: 159  PAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMC 218

Query: 624  AALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRV 803
             + +RPGIVHRLDKGTSGLLVVAK+EHS A L+EQFK HTI RVYVS+T GVP+  +GRV
Sbjct: 219  ESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRV 278

Query: 804  DIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIR 983
            DI IGRD+NNR+RM A+ G+  + ++R+A SRY+VIE LAGG SA+VEWRLETGRTHQIR
Sbjct: 279  DIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIR 338

Query: 984  AHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKH 1163
            AHAK+LG PL+GDEVYGGTK MALSLL+ KTP   H  L +LV +  RPCLHA  LGF+H
Sbjct: 339  AHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRH 398

Query: 1164 PHTGKDMKFSCPPPADFTEILSLLQNIE 1247
            P TG+++ F+  PP DF EILS L+ I+
Sbjct: 399  PFTGENIHFTRLPPPDFAEILSELRAIK 426


>ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355492867|gb|AES74070.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 465

 Score =  501 bits (1290), Expect = e-139
 Identities = 264/408 (64%), Positives = 315/408 (77%), Gaps = 16/408 (3%)
 Frame = +3

Query: 90   TDESTEEDNFVSKSGNYAGAKLEEI--NGG---EKLRLDTWISSRMSGVSRARVQSSIKS 254
            ++ STEE        NYAG  LEEI  +GG    KLRLD+WISSR++G+SRARVQSSIK+
Sbjct: 56   SNSSTEEPK-----SNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKA 110

Query: 255  GLVKVNGRVVNKVSHVI---------RAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHV 407
            GLV VNGRVV+K+S V+         RAGD++ CTI+E+Q LRA PE+IPL+IV+EDDH+
Sbjct: 111  GLVHVNGRVVDKLSIVVILEQVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHL 170

Query: 408  LVVNKPAHMVVHPAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSD 587
            LV+NKPAHMVVHPAPGN +GTLV+GILHHC LP V     +  S+TED SD+EL GF S 
Sbjct: 171  LVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTED-SDDELNGFSSQ 229

Query: 588  QNSSEDLNSRSSAALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSL 767
             +SS  L+SR S A IRPGIVHRLDKGTSGLLVVAK+EHSH  LSEQFKL TI RVYVSL
Sbjct: 230  SSSSVGLDSRLSMASIRPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSL 289

Query: 768  TNGVPSPASGRVDIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVE 947
            T GVP+P SGRV++ +GRD NNRLRM AV G  N+ +AR+AASRY+VIE+LAGG+ A+VE
Sbjct: 290  TAGVPTPVSGRVEVPVGRDPNNRLRMIAVAGLVNSVKARHAASRYKVIEILAGGSCALVE 349

Query: 948  WRLETGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQR 1127
            W+LETGRTHQIRAHAKYLG PLLGDEVYGGTK M LSLLR +T  + H+ + + V    R
Sbjct: 350  WKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSLHSEMFKTVSGLDR 409

Query: 1128 PCLHAYALGFKHPHTGKDMKFSCPPPADFTEILSLLQNI--EKLSFKK 1265
            PCLHA  LGF+HPHTG+ + FSC PP DF +ILS L+ I  E +S  K
Sbjct: 410  PCLHASTLGFQHPHTGEQVHFSCEPPVDFNDILSQLRRIGSESISHSK 457


>ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009207|gb|ESW08114.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  501 bits (1289), Expect = e-139
 Identities = 253/393 (64%), Positives = 308/393 (78%), Gaps = 6/393 (1%)
 Frame = +3

Query: 105  EEDNFVSKSGNYAGAKLEEIN----GGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVN 272
            + D+   +  N++G +LEE      G  KLRLD+WISSR++G+SRARVQSSIKSGLV VN
Sbjct: 52   DSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVN 111

Query: 273  GRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAP 452
            GRVV+K S  ++AGD++ CTI+E+Q LRA PE+IPL+IV+ED+HVLV+NKPAHMVVHPAP
Sbjct: 112  GRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAP 171

Query: 453  GNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAAL 632
            GN +GTLV+GILHHC LP V     +  S+TED  D+E+  + S  +S E  +SR S + 
Sbjct: 172  GNTSGTLVNGILHHCNLPNVEFSKEEGLSDTEDC-DDEVNSYGSLASSCEGSHSRPSMSS 230

Query: 633  IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIA 812
            IRPGIVHRLDKGTSGLLVVAKDEHSH  LSEQFK  TI RVYVSLT GVP P SGRVD+ 
Sbjct: 231  IRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVP 290

Query: 813  IGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHA 992
            +GRD NNRLRMTAV G  N+++AR+AASRY+VIE+LAGG+ ++VEW+LETGRTHQIRAHA
Sbjct: 291  VGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHA 350

Query: 993  KYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHT 1172
            KYLG PLLGDEVYGGTK M LSLLR ++P + H  + ++V    RPCLHA  LGF+HPHT
Sbjct: 351  KYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHT 410

Query: 1173 GKDMKFSCPPPADFTEILSLLQNI--EKLSFKK 1265
            G+ + FSC PP DF EILS L+ I  E +SF K
Sbjct: 411  GEQVHFSCEPPVDFDEILSQLRRIGSESVSFSK 443


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  499 bits (1285), Expect = e-138
 Identities = 250/392 (63%), Positives = 309/392 (78%), Gaps = 4/392 (1%)
 Frame = +3

Query: 90   TDESTEEDNFVSKSGNYAGAKLEEINGGE--KLRLDTWISSRMSGVSRARVQSSIKSGLV 263
            +D     D    +  NY+G KLEE   G+  KLRLD+W+SSR+ GVSRARVQSSI+SGLV
Sbjct: 39   SDSDDSPDEIPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLV 98

Query: 264  KVNGRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVH 443
             VNGRV +KVSH+++ GDKV+CTI++++PLRAEPEDIPL+IVFED+HVLVVNKPAHMVVH
Sbjct: 99   SVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVH 158

Query: 444  PAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSS 623
            PAPGN TGTLVSGILHHC LPT++    ++ S+ ED SD+EL  F  +++ + D +S   
Sbjct: 159  PAPGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMC 218

Query: 624  AALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRV 803
             + +RPGIVHRLDKGTSGLLVVAK+E+S A L+EQFK HTI RVYVS+T GVP+  +GRV
Sbjct: 219  ESSVRPGIVHRLDKGTSGLLVVAKNENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRV 278

Query: 804  DIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIR 983
            DI IGRD+NNR+RM A+ G+  + ++R+A SRY+VIE LA G SA+VEWRLETGRTHQIR
Sbjct: 279  DIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKLARGGSALVEWRLETGRTHQIR 338

Query: 984  AHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKH 1163
            AHAKYLG PL+GDEVYGGTK MALSLL+ KTP   H  L +LV +  RPCLHA  LGF+H
Sbjct: 339  AHAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRH 398

Query: 1164 PHTGKDMKFSCPPPADFTEILSLLQ--NIEKL 1253
            P TG+++ F+  PP DF EILS L+  N EK+
Sbjct: 399  PFTGENIHFTRLPPPDFAEILSYLRAINTEKV 430


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
            gi|557086678|gb|ESQ27530.1| hypothetical protein
            EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  499 bits (1284), Expect = e-138
 Identities = 253/371 (68%), Positives = 298/371 (80%), Gaps = 3/371 (0%)
 Frame = +3

Query: 135  NYAGAKLEEINGGE---KLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSHVI 305
            N AG KLEE        K+RLD+WISSR+ GVSRARVQSSI+ GLV VNGRVV+KVSH +
Sbjct: 65   NNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVVDKVSHNV 124

Query: 306  RAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSGI 485
            +AGD+VNCTISE+QPL+AEPEDIPL+IV+ED H+LVVNKPAHMVVHPAPGN TGTLV+GI
Sbjct: 125  KAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPTGTLVNGI 184

Query: 486  LHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIVHRLDK 665
            LHHC LP VA  + +  S+ E +SD+E           E  +S S AA +RPGIVHRLDK
Sbjct: 185  LHHCSLPCVAYSNPEDDSDEETLSDDE-----------EMTSSSSLAASVRPGIVHRLDK 233

Query: 666  GTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNRLRM 845
            GTSGLLVVAKDEHSHAHL+EQFKLHTI RVY+SLT+GVPSP+ GRVDI IGRD NNR+RM
Sbjct: 234  GTSGLLVVAKDEHSHAHLAEQFKLHTIERVYISLTSGVPSPSQGRVDIPIGRDPNNRIRM 293

Query: 846  TAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDE 1025
             A+ GS +  +AR+AASRY+VIE LAGG SA+VEWRLETGRTHQIRAHAKY+G PLLGDE
Sbjct: 294  AAIPGSLSRGKARHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDE 353

Query: 1026 VYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKFSCPPP 1205
            VYGGTK +ALSLL+ +   +    + ELV +  RPCLHA  LGF+HP TG+ +KFSCPPP
Sbjct: 354  VYGGTKSVALSLLQRRVSRSDQEQILELVSRMDRPCLHAIVLGFEHPCTGEVVKFSCPPP 413

Query: 1206 ADFTEILSLLQ 1238
            +D  EI+ LL+
Sbjct: 414  SDLAEIVGLLR 424


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  498 bits (1283), Expect = e-138
 Identities = 267/425 (62%), Positives = 311/425 (73%), Gaps = 32/425 (7%)
 Frame = +3

Query: 123  SKSGNYAGAKLEEI-----NGGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVN 287
            S+  NYAG +LEE      +   KLRLD+WISSR+ G+SRARVQSSI+SGLV VN R+V+
Sbjct: 182  SRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVD 241

Query: 288  K---------------------------VSHVIRAGDKVNCTISEMQPLRAEPEDIPLNI 386
            K                           VSHVIRAGDKVNCTISE+QPLRAEPEDIPL+I
Sbjct: 242  KAMLVSRKFEVGEGKKIEEKDPITYSEQVSHVIRAGDKVNCTISELQPLRAEPEDIPLDI 301

Query: 387  VFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEE 566
            V+ED+HV          VHPAPGN +GTLV+GILHHC LPTVALP+ D  SE +DI D+E
Sbjct: 302  VYEDEHV----------VHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEEDDILDDE 349

Query: 567  LEGFYSDQNSSEDLNSRSSAALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTI 746
               F + QN        +    IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH+I
Sbjct: 350  FNSFAAGQNCG------TCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSI 403

Query: 747  HRVYVSLTNGVPSPASGRVDIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAG 926
            HRVY+SLT+GVP+P SGRV+I +GRD NNR+RMTAV G +N+ QAR+AASRY+VIE+LA 
Sbjct: 404  HRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAA 463

Query: 927  GASAMVEWRLETGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPE 1106
            G SA+VEWRLETGRTHQIRAHAKYLG PLLGDEVYGGTK MALSLLR + PS+ H  L +
Sbjct: 464  GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQ 523

Query: 1107 LVDKFQRPCLHAYALGFKHPHTGKDMKFSCPPPADFTEILSLLQNIEKLSFKK*FSLLAT 1286
            LV +  RPCLHA ALGF HP TGK++ FSC PP DF EILS L+   K+S +K   L  T
Sbjct: 524  LVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLR---KISTEKRHPLDVT 580

Query: 1287 REVKD 1301
             E+ +
Sbjct: 581  FELSE 585


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
            gi|548833830|gb|ERM96267.1| hypothetical protein
            AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  497 bits (1279), Expect = e-138
 Identities = 242/375 (64%), Positives = 298/375 (79%), Gaps = 2/375 (0%)
 Frame = +3

Query: 126  KSGNYAGAKLEE--INGGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSH 299
            ++  Y G + E     G +K R+D+W+S+R+  VSRAR+QSSI+ G VKVNG  + KVSH
Sbjct: 63   RAEGYGGLQFESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSH 122

Query: 300  VIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVS 479
            +++ GD V+CT+S +QPL+AEPED+PL+I++EDDHVLVVNKPAHMVVHPAPGN  GTLV+
Sbjct: 123  IVKVGDMVDCTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVN 182

Query: 480  GILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIVHRL 659
            GILHHC LP   LPD ++ SE++D  D  L  F  D  S++    RSS   IRPGIVHRL
Sbjct: 183  GILHHCTLPAFGLPDGELTSESDDECDNGLTMFNPDPISTQ---CRSS---IRPGIVHRL 236

Query: 660  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNRL 839
            DKGTSGLLVVAK+EHSHAHLSEQFKLHTIHR Y+SLT GVPSP++G ++I I RD NNR+
Sbjct: 237  DKGTSGLLVVAKNEHSHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRI 296

Query: 840  RMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLG 1019
            RM AV+G NNT++AR A SRY V+EVLAGG SA+VEWRL+TGRTHQIR HAKY+G PLLG
Sbjct: 297  RMAAVSGQNNTRKARLATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLG 356

Query: 1020 DEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKFSCP 1199
            DEVYGGTK MALS LR +TPS+ H  L +LV   QRPCLHA++LGFKHPH+ +++ F+CP
Sbjct: 357  DEVYGGTKSMALSRLRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCP 416

Query: 1200 PPADFTEILSLLQNI 1244
            PP DF E+L  LQ+I
Sbjct: 417  PPPDFAEVLRQLQSI 431


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  496 bits (1277), Expect = e-137
 Identities = 253/387 (65%), Positives = 306/387 (79%), Gaps = 3/387 (0%)
 Frame = +3

Query: 93   DESTEEDNFVSKSGNYAGAKLEE---INGGEKLRLDTWISSRMSGVSRARVQSSIKSGLV 263
            DE +E  +   +  NYAG +LEE   +N G K+RLD+WIS R++G+SRARVQSSI++GLV
Sbjct: 48   DEYSEAQS--ERIANYAGTRLEETVDVNPG-KVRLDSWISCRINGISRARVQSSIRAGLV 104

Query: 264  KVNGRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVH 443
             VNGRV++KVSH ++AGD +NCTISE+QPLRAEPEDI L+IV+ED+HVLVVNKPAHMVVH
Sbjct: 105  SVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVH 164

Query: 444  PAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSS 623
            PAPGN TGTLV+ IL+HC LP VA    +  S++ D+SD+E         SS  + SR S
Sbjct: 165  PAPGNATGTLVNAILNHCSLPMVATSTGENESDS-DVSDDEF--------SSIGVFSRVS 215

Query: 624  AALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRV 803
             A IRPGIVHRLDKGTSGLLVVAKDEHSHAHLS QFK H+I RVY+SLT GVP   +GR+
Sbjct: 216  EAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRI 275

Query: 804  DIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIR 983
            ++ I RD NNR+RMTA++G+ N   A+ AASRY V+E+LA G S++VEWRLETGRTHQIR
Sbjct: 276  EMPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIR 335

Query: 984  AHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKH 1163
            AHAKY+G PLLGDEVYGGTK MA+SLLR +  SN H  L +LV   +RPCLHA  LGF H
Sbjct: 336  AHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVH 395

Query: 1164 PHTGKDMKFSCPPPADFTEILSLLQNI 1244
            PHTGK+++FSCPPP DFTEILS L+ I
Sbjct: 396  PHTGKNIRFSCPPPTDFTEILSQLREI 422


>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Setaria
            italica]
          Length = 437

 Score =  495 bits (1274), Expect = e-137
 Identities = 250/378 (66%), Positives = 301/378 (79%), Gaps = 5/378 (1%)
 Frame = +3

Query: 126  KSGNYAGAKLEE-INGGE-KLRLDTWISSRMSG--VSRARVQSSIKSGLVKVNGRVVNKV 293
            +SG   G +LEE +  GE + R+D WIS+R+ G  VSRARVQ+SI++GLV VNGR V+KV
Sbjct: 48   RSGGLTGTRLEEAVPAGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKV 107

Query: 294  SHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTL 473
            SH+++ GD V+CT+SE+QPLRAE EDIPL+IV+EDDHVLVVNKPAHMVVHPAPGN  GTL
Sbjct: 108  SHMVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTL 167

Query: 474  VSGILHHCRLPT-VALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIV 650
            V+ ILHHCR+ T   L  N    E  D SD++++ F  DQ ++ED++S    AL+RPGIV
Sbjct: 168  VNAILHHCRISTFTCLARNSTGDECPDSSDDDVDVFDVDQFTTEDVSSEVRNALVRPGIV 227

Query: 651  HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTN 830
            HRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVY+SLT GVP P SGR++ +I RD N
Sbjct: 228  HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPN 287

Query: 831  NRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYP 1010
            NR+RM A+ GS   + AR+AASRY+V EV AGG SA+VEWRLETGRTHQIRAHAKYLG P
Sbjct: 288  NRIRMIAIAGSGQ-RYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIP 346

Query: 1011 LLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKF 1190
            LLGDE YGGTK MALSLLR +TPS  H+ L +L+ K  RPCLHA  LGFKHPH+GK ++F
Sbjct: 347  LLGDETYGGTKSMALSLLRPRTPSKYHSGLSDLISKVDRPCLHAALLGFKHPHSGKILEF 406

Query: 1191 SCPPPADFTEILSLLQNI 1244
            SCPPP DFTE+L  L+ +
Sbjct: 407  SCPPPDDFTEVLDELRRV 424


>ref|XP_007017901.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao] gi|508723229|gb|EOY15126.1| Pseudouridine synthase
            family protein isoform 2, partial [Theobroma cacao]
          Length = 409

 Score =  494 bits (1272), Expect = e-137
 Identities = 258/382 (67%), Positives = 303/382 (79%), Gaps = 5/382 (1%)
 Frame = +3

Query: 135  NYAGAKLEEINGGEK---LRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSHVI 305
            +Y G +LEE   G K   LRLD+WISSR+ G+SRARVQSSIKSGLV VNGRVV+KVSH +
Sbjct: 49   SYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGL 108

Query: 306  RAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSGI 485
            R GDKVNC ISE+QPLRAEPEDIPL+IV+EDDHVLVVNKP HMVVHPAPGN TGTLV+GI
Sbjct: 109  RHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGI 168

Query: 486  LHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIVHRLDK 665
            LHHC LPTVAL + ++ S+TED+SD++ EGF             S+AA +RPGIVHRLDK
Sbjct: 169  LHHCSLPTVALSEKEVLSDTEDVSDDD-EGF---------CYGASAAASVRPGIVHRLDK 218

Query: 666  GTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNRLRM 845
            GTSGLLVVAK           FK HTI RVY+SLT GVPSP++GRVDI+IGRD+NNR+RM
Sbjct: 219  GTSGLLVVAK-----------FKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRM 267

Query: 846  TAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDE 1025
             AV G N+  +AR+AASRY+VIEVLAGG SA+++WRLETGRTHQIRAHAKY+G PLLGDE
Sbjct: 268  IAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDE 327

Query: 1026 VYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMKFSCPPP 1205
            VYGGTK MALSLLR +TP N ++ L  LV + +RP LHA  LGF+HPH+ + M FSC PP
Sbjct: 328  VYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPP 387

Query: 1206 ADFTEILSLLQNI--EKLSFKK 1265
             DF EILS L+ I  EK +FK+
Sbjct: 388  PDFAEILSDLRKIGTEKPTFKE 409


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  494 bits (1271), Expect = e-137
 Identities = 254/387 (65%), Positives = 307/387 (79%), Gaps = 3/387 (0%)
 Frame = +3

Query: 93   DESTEEDNFVSKSGNYAGAKLEE---INGGEKLRLDTWISSRMSGVSRARVQSSIKSGLV 263
            DE +E  +   +  NYAG +LEE   +N G K+RLD+WIS R++G+SRARVQSSI++GLV
Sbjct: 48   DEYSEAQS--ERIANYAGTRLEETVDVNPG-KVRLDSWISCRINGISRARVQSSIRAGLV 104

Query: 264  KVNGRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVH 443
             VNGRV++KVSH ++AGD +NCTISE+QPLRAEPEDI L+IV+ED+HVLVVNKPAHMVVH
Sbjct: 105  SVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVH 164

Query: 444  PAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSS 623
            PAPGN TGTLV+ IL+HC LP VA    +  S++ D+SD+E         SS  + SR S
Sbjct: 165  PAPGNATGTLVNAILNHCSLPMVATSTGENESDS-DVSDDEF--------SSIGVFSRVS 215

Query: 624  AALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRV 803
             A IRPGIVHRLDKGTSGLLVVAKDEHSHAHLS QFK H+I RVY+SLT GVP   +GR+
Sbjct: 216  EAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRI 275

Query: 804  DIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIR 983
            ++ I RD NNR+RMTA++G+NN   A+ AASRY V+E+LA G S++VEWRLETGRTHQIR
Sbjct: 276  EMPICRDPNNRIRMTAIDGTNN-PHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIR 334

Query: 984  AHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKH 1163
            AHAKY+G PLLGDEVYGGTK MA+SLLR +  SN H  L +LV   +RPCLHA  LGF H
Sbjct: 335  AHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVH 394

Query: 1164 PHTGKDMKFSCPPPADFTEILSLLQNI 1244
            PHTGK+++FSCPPP DFTEILS L+ I
Sbjct: 395  PHTGKNIRFSCPPPTDFTEILSQLREI 421


>ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009206|gb|ESW08113.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  492 bits (1267), Expect = e-136
 Identities = 253/404 (62%), Positives = 308/404 (76%), Gaps = 17/404 (4%)
 Frame = +3

Query: 105  EEDNFVSKSGNYAGAKLEEIN----GGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVN 272
            + D+   +  N++G +LEE      G  KLRLD+WISSR++G+SRARVQSSIKSGLV VN
Sbjct: 52   DSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVN 111

Query: 273  GRVVNK-----------VSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVN 419
            GRVV+K            S  ++AGD++ CTI+E+Q LRA PE+IPL+IV+ED+HVLV+N
Sbjct: 112  GRVVDKKSKHQPEQYALASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVIN 171

Query: 420  KPAHMVVHPAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSS 599
            KPAHMVVHPAPGN +GTLV+GILHHC LP V     +  S+TED  D+E+  + S  +S 
Sbjct: 172  KPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTEDC-DDEVNSYGSLASSC 230

Query: 600  EDLNSRSSAALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGV 779
            E  +SR S + IRPGIVHRLDKGTSGLLVVAKDEHSH  LSEQFK  TI RVYVSLT GV
Sbjct: 231  EGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGV 290

Query: 780  PSPASGRVDIAIGRDTNNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLE 959
            P P SGRVD+ +GRD NNRLRMTAV G  N+++AR+AASRY+VIE+LAGG+ ++VEW+LE
Sbjct: 291  PRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLE 350

Query: 960  TGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLH 1139
            TGRTHQIRAHAKYLG PLLGDEVYGGTK M LSLLR ++P + H  + ++V    RPCLH
Sbjct: 351  TGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLH 410

Query: 1140 AYALGFKHPHTGKDMKFSCPPPADFTEILSLLQNI--EKLSFKK 1265
            A  LGF+HPHTG+ + FSC PP DF EILS L+ I  E +SF K
Sbjct: 411  ALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGSESVSFSK 454


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  491 bits (1263), Expect = e-136
 Identities = 245/379 (64%), Positives = 301/379 (79%), Gaps = 5/379 (1%)
 Frame = +3

Query: 123  SKSGNYAGAKLEE-INGGE-KLRLDTWISSRMSG--VSRARVQSSIKSGLVKVNGRVVNK 290
            S+ G + G +LEE +  GE + R+D WIS+R+ G  VSRAR+Q+SI++GLV VNGR V+K
Sbjct: 51   SRRGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSK 110

Query: 291  VSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGT 470
            VSH+++ GD V+CT+SE+QPLRAEPEDIPL+IV+EDDH+LVVNKPAHMVVHPAPGN  GT
Sbjct: 111  VSHMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170

Query: 471  LVSGILHHCRLPT-VALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGI 647
            LV+ ILHHC++ T   L  N I  E  D SD++++ F  DQ ++ +++S    AL+RPGI
Sbjct: 171  LVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGI 230

Query: 648  VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDT 827
            VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVY+SLT G P+P SGR+++ I RD 
Sbjct: 231  VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290

Query: 828  NNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGY 1007
            NNR+RM A  GS + + AR+AASRY+V EV AGG SA+VEWRLETGRTHQIRAHAKYLG 
Sbjct: 291  NNRIRMIATPGSGH-RYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGI 349

Query: 1008 PLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMK 1187
            PLLGDE YGGTK MALSLLR +TPS  H  L  ++ K  RPCLHA  LGFKHPH+GK ++
Sbjct: 350  PLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILE 409

Query: 1188 FSCPPPADFTEILSLLQNI 1244
            FSCPPP DFTE+L+ L  +
Sbjct: 410  FSCPPPDDFTEVLNELHQV 428


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
            gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|53791796|dbj|BAD53590.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|54291043|dbj|BAD61720.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
            Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222636236|gb|EEE66368.1| hypothetical protein
            OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score =  488 bits (1257), Expect = e-135
 Identities = 244/379 (64%), Positives = 300/379 (79%), Gaps = 5/379 (1%)
 Frame = +3

Query: 123  SKSGNYAGAKLEE-INGGE-KLRLDTWISSRMSG--VSRARVQSSIKSGLVKVNGRVVNK 290
            S+ G + G +LEE +  GE + R+D WIS+R+ G  VSRAR+Q+SI++GLV VNGR V+K
Sbjct: 51   SRRGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSK 110

Query: 291  VSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGT 470
            VSH+++ GD V+CT+ E+QPLRAEPEDIPL+IV+EDDH+LVVNKPAHMVVHPAPGN  GT
Sbjct: 111  VSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170

Query: 471  LVSGILHHCRLPT-VALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGI 647
            LV+ ILHHC++ T   L  N I  E  D SD++++ F  DQ ++ +++S    AL+RPGI
Sbjct: 171  LVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGI 230

Query: 648  VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDT 827
            VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVY+SLT G P+P SGR+++ I RD 
Sbjct: 231  VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290

Query: 828  NNRLRMTAVNGSNNTKQARNAASRYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGY 1007
            NNR+RM A  GS + + AR+AASRY+V EV AGG SA+VEWRLETGRTHQIRAHAKYLG 
Sbjct: 291  NNRIRMIATPGSGH-RYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGI 349

Query: 1008 PLLGDEVYGGTKGMALSLLRHKTPSNRHNYLPELVDKFQRPCLHAYALGFKHPHTGKDMK 1187
            PLLGDE YGGTK MALSLLR +TPS  H  L  ++ K  RPCLHA  LGFKHPH+GK ++
Sbjct: 350  PLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILE 409

Query: 1188 FSCPPPADFTEILSLLQNI 1244
            FSCPPP DFTE+L+ L  +
Sbjct: 410  FSCPPPDDFTEVLNELHQV 428