BLASTX nr result

ID: Papaver27_contig00036908 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00036908
         (3368 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003605033.1| F-box/kelch-repeat protein [Medicago truncat...    63   1e-06
ref|XP_002300154.1| hypothetical protein POPTR_0001s32580g [Popu...    63   1e-06
ref|XP_003605059.1| F-box family protein [Medicago truncatula] g...    62   2e-06

>ref|XP_003605033.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355506088|gb|AES87230.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 500

 Score = 62.8 bits (151), Expect = 1e-06
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
 Frame = -3

Query: 642 KKATMSSLPREIEEVILLRLPVKSTLRFKCVCKLLHTLIYDPKFVKD*FSL--TNKNPRL 469
           K+ T+  LP E+   IL+RLPVKS + FKCVCKL  +LI DP F    F L  T   PR+
Sbjct: 123 KQKTLPYLPHELIIQILMRLPVKSLIHFKCVCKLWFSLISDPHFANSHFQLTTTTHTPRI 182

Query: 468 LMIRNITYGSRKLWF 424
           + I ++++  R + F
Sbjct: 183 MCISSLSHEIRSIGF 197


>ref|XP_002300154.1| hypothetical protein POPTR_0001s32580g [Populus trichocarpa]
           gi|222847412|gb|EEE84959.1| hypothetical protein
           POPTR_0001s32580g [Populus trichocarpa]
          Length = 372

 Score = 62.8 bits (151), Expect = 1e-06
 Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
 Frame = -3

Query: 630 MSSLPREIEEVILLRLPVKSTLRFKCVCKLLHTLIYDPKFVKD*FSL-----TNKNPRLL 466
           MS LP++I   IL  LPVKS LRFKCVCKL H+LI DPKFVK          +NK+ RLL
Sbjct: 1   MSKLPQDIMVDILTYLPVKSLLRFKCVCKLWHSLISDPKFVKSHLKTAREVNSNKSQRLL 60

Query: 465 M 463
           +
Sbjct: 61  L 61


>ref|XP_003605059.1| F-box family protein [Medicago truncatula]
           gi|355506114|gb|AES87256.1| F-box family protein
           [Medicago truncatula]
          Length = 222

 Score = 61.6 bits (148), Expect = 2e-06
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
 Frame = -3

Query: 711 IFSYILNTISLTNQFYPSSVLTMKKATMSS---------LPREIEEVILLRLPVKSTLRF 559
           + S ++ +  L ++   S +   KKA   S         LPRE+   IL+ LPVKS +RF
Sbjct: 2   VISLVVISTLLKSKIRVSRITVKKKAVEESMEKKKKTLYLPRELIIQILMWLPVKSLIRF 61

Query: 558 KCVCKLLHTLIYDPKFVKD*FSLT--NKNPRLLMIRNITYGSRKLWF 424
           KCVCKL  +LI DP F    F LT     PR++ I  +++  + L+F
Sbjct: 62  KCVCKLWFSLISDPHFANSHFQLTAAANTPRIMCISYLSHEIQSLYF 108


Top