BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00033030
         (4078 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1634   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1627   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1610   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1583   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...  1582   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...  1571   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1566   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1551   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1551   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1531   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1527   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1524   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1524   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1523   0.0  
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...  1523   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1522   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1518   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1514   0.0  
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...  1508   0.0  
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps...  1506   0.0  

>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1634 bits (4232), Expect = 0.0
 Identities = 791/1201 (65%), Positives = 945/1201 (78%), Gaps = 5/1201 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            E   K+ ++TQVSLGGFD  VTAK+L +++E+EIG+ WRCRLK SWTPPES  NF+IT+ 
Sbjct: 4    EGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDI 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
              +   +D+ +VEPHAFVHFA P SAT   D A R +L LN K L  +LGPE+ F +N R
Sbjct: 64   TKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQR 123

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
            R +  PF   GVGVEIGT VSRDEF +GW+GPP G DF +DPFDG+C+  F++ TAFSFK
Sbjct: 124  RRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFK 183

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
             T+ HAV+KCDFK EF VRDINE++ Y +    V+ LQL S+P ++YRTADDDI  +VPF
Sbjct: 184  STAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPF 243

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCPAP- 1194
            DLLDD+DPWIRTTDFT++  IGRC+SYR+ +PPR G KL++A+++LK+ R+       P 
Sbjct: 244  DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPI 303

Query: 1195 KFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSHDR 1374
            +  +EPDFG PM DPFFC H KE I+F++LFLVNA +HKGIF+  QLS+ FF+LLR+   
Sbjct: 304  RIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPT 363

Query: 1375 EVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPTKA 1554
            EVNVAAL +IY  + PVFD  ++L+  Q  LLKNPK  K+ K L D AE+RRL+ITPTKA
Sbjct: 364  EVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKA 423

Query: 1555 YCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSFPQ 1734
            YCLPPEVELSNR+LRKY++ ADRFLRVTFMDEG Q +NSN L Y+ APIVR +T  SFPQ
Sbjct: 424  YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQ 483

Query: 1735 KTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGKFT 1914
            KT +F RV++IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAE  NI V  IKSWMGKFT
Sbjct: 484  KTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFT 543

Query: 1915 DKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEVAD 2094
            +KN+AKC ARMG CFSST+AT+EVP E+VN +LPDI+RNGY FSDGIG ITPDLA+EVA+
Sbjct: 544  NKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAE 603

Query: 2095 KLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQ 2274
            KL+   +PPCAYQIR+AGCKGVVACWPE+ D  RLS+R SM KFQS HT+LEI SWTRFQ
Sbjct: 604  KLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQ 663

Query: 2275 PGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTAAM 2454
            PGFLNRQII LLSAL VPD+VF  MQ  MV KL  +L ++D+AFDVLT+SCAEQGN AA+
Sbjct: 664  PGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAI 723

Query: 2455 MLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFI 2634
            ML AGFKPQ EPHLRGMLT +RA Q   L EK RIFVP GRWLMGC DELGVLEQGQCFI
Sbjct: 724  MLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFI 783

Query: 2635 QSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLV 2814
            Q S   LENCF   G  FS TK +LQV+KGTVV+AKNPCLHPGDIRILEAVD PGLHHL 
Sbjct: 784  QVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLY 843

Query: 2815 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQRAI 2994
            DCLVFPQKG+RPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPM Y   E ++L R +
Sbjct: 844  DCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPV 903

Query: 2995 NQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTGKV 3174
            N  DIV+FF KNM NE LG ICN+HVV ADLS+YGA+DEKC+ LAELAATAVDFPKTGK+
Sbjct: 904  NHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKI 963

Query: 3175 VAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQVD- 3351
            V+MP +LKPK+YPDFMGKE+  SYKSKK+LG LYR+IKD+ D      D D  A  +++ 
Sbjct: 964  VSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYD------DDDVAASSELNF 1017

Query: 3352 ---DIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKY 3522
               DIPYD DLEV G+ DFI +AWDRKC YDGQLN LL Q+ VK EEEVVTGHVWSMPK 
Sbjct: 1018 VRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKG 1077

Query: 3523 NNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHP 3702
            ++R           +YN ++REF++VF+ +  D   L + EKN +YE+KASAWYQVTYHP
Sbjct: 1078 SSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHP 1137

Query: 3703 RWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADK 3882
             W++KS+EL++SD    + MLSFAW+ A+YL RIKIR   + ++D  KP+NSLA YLAD+
Sbjct: 1138 HWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADR 1197

Query: 3883 I 3885
            +
Sbjct: 1198 M 1198


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1627 bits (4214), Expect = 0.0
 Identities = 781/1200 (65%), Positives = 945/1200 (78%), Gaps = 4/1200 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            E   K+ ++TQVS+GGFD  VTAK+L +++++ IG+ WRCRLK SWTPPES  NF+IT+ 
Sbjct: 4    EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDI 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
              ++  +D+ +V PHAFVHFA P SAT   + +GR +L LN K L V+LGP++ F +N R
Sbjct: 64   TKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQR 123

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
            R    PF    VG EIG  VSRDEF +GW+GPP G DF +DPFDG+CK  F++ TAFS K
Sbjct: 124  RRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLK 183

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
             TS HAV+KCDFK EF VRDINE+  Y +    V+ LQL S+P ++YRTADDDI A VPF
Sbjct: 184  STSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCPAPK 1197
            DLLDD+DPWIRTTDFT++  IGRC+SYR+ +PPR G KL++A++YLK+ R+        +
Sbjct: 244  DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHR 303

Query: 1198 FH----EEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRS 1365
                  +EPDFG PM DPFFC H KE I+FE+LFLVNA +HKGIF+  QLS+ FF+LLR+
Sbjct: 304  RRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 363

Query: 1366 HDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITP 1545
               EVNV+AL +I + + PVF+   RL+ VQ  LLKNP + K+ K LGD  E+RRL+ITP
Sbjct: 364  QHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITP 423

Query: 1546 TKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNS 1725
            TKAYCLPPEVELSNR+LRKY++ ADRFLRVTFMDEG Q++NSNVL YYVAPIVRD+T NS
Sbjct: 424  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNS 483

Query: 1726 FPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMG 1905
            FPQKT +F RV++IL +GFYLCGR+YSFLAFS+NQLRD+SAWFF+E  NI V D+KSWMG
Sbjct: 484  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMG 543

Query: 1906 KFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKE 2085
            KFT++N+AKC ARMG CFSST+AT+EVP E+VN +LPDIERNGYVFSDGIG ITPDLA+E
Sbjct: 544  KFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLARE 603

Query: 2086 VADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWT 2265
            VA+KL+L  +PPCAYQIR+AGCKGVVACWP K D  RLS+RPSM KFQS HT LEI SWT
Sbjct: 604  VAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWT 663

Query: 2266 RFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNT 2445
            RFQPGFLNRQII LLS L VPD+VF  MQ TMV KL  +  N+D+AFDVLT+SCA+QGN 
Sbjct: 664  RFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNV 723

Query: 2446 AAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQ 2625
            AA+ML AGFKP  EPHLRGMLT +RA Q  DL EKTRIFVP GRWLMGC DELG+LEQGQ
Sbjct: 724  AAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQ 783

Query: 2626 CFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLH 2805
            CFIQ S  SLE CF   G  FS  + +LQVIKGTVV+AKNPCLHPGD+R+LEAVD PGLH
Sbjct: 784  CFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLH 843

Query: 2806 HLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQ 2985
            HL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPSKRSWIPM Y   E + L 
Sbjct: 844  HLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLA 903

Query: 2986 RAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKT 3165
            R +N  DI++FF KNMVN+ LG ICN+HVVHADLS+YGA D+ C+ LAELAATAVDFPKT
Sbjct: 904  RPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKT 963

Query: 3166 GKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQ 3345
            GKVV+MP  LKPKMYPDFMGKE++ SYKS+K+LG LYR+IKD+ D  V  S +  L    
Sbjct: 964  GKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV--- 1020

Query: 3346 VDDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKYN 3525
              DIPYD+DLEV G++D+I +AWD+KC YDGQLN LL Q+ VK EEEVVTGH+WSMPKY+
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 3526 NRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHPR 3705
            +R           +YNS+++EF+++F+ +  + + L + EKN +YEQKASAWYQV YHP 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 3706 WVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADKI 3885
            WVKKS+EL++ D    + MLSFAW+ A+YL RIKIR R+  ++D  KP+NSLA YLAD++
Sbjct: 1141 WVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1610 bits (4170), Expect = 0.0
 Identities = 785/1203 (65%), Positives = 924/1203 (76%), Gaps = 7/1203 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            +R +K+ ++TQVS GGFD+DVTA++L  +++ EIG  WRCRLK SWTPPES  NF+IT+T
Sbjct: 4    KRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDT 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
              ++  D + +VEPHAFVHFASPDSAT   + AG  +L  NG+ + V+LGPE+ F +N R
Sbjct: 64   AVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQR 123

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
            R    PF    V VEIGT VSRDEFL+GW+GPP G DF +DPFDG CK  FT++TAFSFK
Sbjct: 124  RRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFK 183

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
            GT+ HAV++CDFK EF VRDINE++ Y D    V+ LQL S+P ++YRTADDDI   VPF
Sbjct: 184  GTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPF 243

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCPAPK 1197
            DLLDD+DPWIRTTDFT +  IGRCNSYR+ +PPR G KLK A+ +L++ R+   DC    
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRV-QEDCLRRP 302

Query: 1198 FH--EEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSHD 1371
             H   EP++  PM DPFFC H +E + F L+FLVNA +HKGIF+  QLSD FF+LLR+  
Sbjct: 303  LHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQP 362

Query: 1372 REVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPTK 1551
             +VN+AAL +I S K PVFD  +RL+ VQ  LLKNPK+ +S K L D  E+RRL ITPT+
Sbjct: 363  LDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTR 422

Query: 1552 AYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSFP 1731
            AYCLPPEVELSNR+LR+Y++ AD+FLRVTFMDEG Q +N+N LTYY APIVRD+T NSF 
Sbjct: 423  AYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFS 482

Query: 1732 QKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGKF 1911
            QKT +F RVK+IL DGFYLCGRKYSFLAFSSNQLRDRSAWFFAE     VS I++WMGKF
Sbjct: 483  QKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKF 542

Query: 1912 TDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEVA 2091
            T++N+AKC ARMG CFSST+ATVEVP  +   +LPDIERN Y+FSDGIG ITPDLAKEVA
Sbjct: 543  TNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVA 602

Query: 2092 DKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRF 2271
            +KL+L  NPPCAYQIR+AGCKGVVACWP   D  RLS+R SM KF S HT LEI SWTRF
Sbjct: 603  EKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRF 662

Query: 2272 QPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTAA 2451
            QPGFLNRQII LLS L VPD +F  MQ  MV KL  +  + D+AFDV+T+SCAEQGNTAA
Sbjct: 663  QPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAA 722

Query: 2452 MMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCF 2631
            +ML AGF P+TEPHL GMLT IRA Q   L EKTRIFVP GRWLMGC DELGVLE GQCF
Sbjct: 723  IMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCF 782

Query: 2632 IQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHL 2811
            IQ S PSLE+CF   G  FS +K  LQV+KGTVVVAKNPCLHPGDIRILEAVD P LHHL
Sbjct: 783  IQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHL 842

Query: 2812 VDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQRA 2991
             DCLVFPQKGDRPH NEASGSDLDGDLYFVTWDENLIPPSKRSW+PM Y   E ++L R 
Sbjct: 843  HDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRP 902

Query: 2992 INQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTGK 3171
            +N  DI+DFF KNMVNE LG ICN+HVVHADLS+YGA+DE CIKLAELAATAVDFPKTGK
Sbjct: 903  VNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGK 962

Query: 3172 VVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQV- 3348
            +V MP  LKPK+YPDFMGKED+ SY S K+LG LYR++KD  D    D D D  A     
Sbjct: 963  LVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKD--DYNDDDDDDDDAATSSEL 1020

Query: 3349 ----DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMP 3516
                 DIPYD DLEV GS+D+I +AWD+KC YDGQL  LL Q+ VK EEEVVTGH+WSMP
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080

Query: 3517 KYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTY 3696
            K N+R           +Y+S+++EF++VF+ +  D + LTE EKN +YEQKASAWYQV Y
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140

Query: 3697 HPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLA 3876
            HP+WV KS+EL+  D      MLSFAW+ A+YL RIKIR R    +D  KP+NSL  YLA
Sbjct: 1141 HPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLA 1200

Query: 3877 DKI 3885
            D+I
Sbjct: 1201 DRI 1203


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1583 bits (4098), Expect = 0.0
 Identities = 781/1201 (65%), Positives = 929/1201 (77%), Gaps = 5/1201 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            E  +KD+++TQ+S+GGFDQ VTA EL  ++E  IG   RCRLK S TPPES  +F+I +T
Sbjct: 4    EGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDT 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
              ++  +D++KVEPHAFVHF SP++AT   D AG+++L L+GK L V+LGPE+ F +N R
Sbjct: 64   AKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQR 123

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
            R    PF F  V +EIG  VSRDE+  GW+GP  G DF +DPFDG+CK  FTK+TAFSFK
Sbjct: 124  RRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFK 183

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
            G   HAV+KC+FK EF VR+INEVR   D  S ++ LQL SSP +YYRTADDDI  TVPF
Sbjct: 184  GMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPF 243

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCPAPK 1197
            DLLDD+DPWIRTTDFT +  IGRCNSYRI +PPR G KLK+A++YL+  R+   +  +PK
Sbjct: 244  DLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLE-DSPK 302

Query: 1198 FH----EEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRS 1365
            +     +EPDFG PM DPFFC   KE I F ++FLVNA +HKGI +  QLSD+FF+LLRS
Sbjct: 303  WQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRS 362

Query: 1366 HDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITP 1545
              +++N+AAL +I S + PVFD  +RL+ V   LLKNPK++KS K L D  EVRRL+ITP
Sbjct: 363  QQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITP 422

Query: 1546 TKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNS 1725
            +KAYCLPPEVELSNR+LR Y+E +DRFLRVTFMDEG Q +N+NVL YYVAPIV+ +T NS
Sbjct: 423  SKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNS 482

Query: 1726 FPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMG 1905
            FPQKT VF RVKTIL DGFYLCGRKYSFLAFSSNQLRDRSAWFFAE     V  IKSWMG
Sbjct: 483  FPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMG 542

Query: 1906 KFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKE 2085
            KFT++NVAKC ARMG CFSST+ATVEVP  +V   LPDI+RNGY FSDGIGKI PDLA E
Sbjct: 543  KFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAME 601

Query: 2086 VADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWT 2265
            VA+KL+L    P AYQIR+AGCKGVVACWP   D  RLS RPSM KF S HT+LEI SWT
Sbjct: 602  VAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWT 660

Query: 2266 RFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNT 2445
            RFQPGFLNRQI+ LLSAL VPD +F  MQ +M+ KL  +L +TD+AFDVL +SCAEQGNT
Sbjct: 661  RFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNT 720

Query: 2446 AAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQ 2625
            AA+ML AGFKPQTEPHL+GMLT IRA QF  L EK RIFVP GRWLMGC DELGVLEQGQ
Sbjct: 721  AAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780

Query: 2626 CFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLH 2805
            CFIQ S PSLENCF   G  FS  K +L+VIKG V +AKNPCLHPGD+RILEAVD PGL 
Sbjct: 781  CFIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLE 839

Query: 2806 HLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQ 2985
            HLVDCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPPSK+SW PM Y   E + L 
Sbjct: 840  HLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALA 899

Query: 2986 RAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKT 3165
            R +   DI+DFF KNMVNE LG ICN+HVVHAD S+YGA+DE C+ LAE AATAVDFPKT
Sbjct: 900  REVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKT 959

Query: 3166 GKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQ 3345
            GK+V +P  LKPKMYPDFMGKE+F +Y+S K+LG++YR+IKD+ +  V +S +    +F 
Sbjct: 960  GKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQ---IFG 1016

Query: 3346 VDDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKYN 3525
             D +P+D DL +PGSADFI +AW  KC YDGQLN LL Q+ VK EEEVVTGHVWSMPKY 
Sbjct: 1017 ADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYK 1076

Query: 3526 NRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHPR 3705
            +R           AY+S+++EF+++F+ +  D   LT+ EKN +YEQKASAWYQVTYHP 
Sbjct: 1077 SRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPT 1136

Query: 3706 WVKKSVELRNSDDKVA-TPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADK 3882
            WVKKS+EL+N D+      MLSFAW+ A+YL RIKIRR+   ++D  KPINSLA +L D+
Sbjct: 1137 WVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDR 1196

Query: 3883 I 3885
            I
Sbjct: 1197 I 1197


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score = 1582 bits (4097), Expect = 0.0
 Identities = 769/1194 (64%), Positives = 927/1194 (77%), Gaps = 1/1194 (0%)
 Frame = +1

Query: 307  KKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNTRDL 486
            +KD ++TQVS+GGF + V AK+L ++ + E+G+ WRCRLK SWTPPES  NF+I ++  +
Sbjct: 7    EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVI 66

Query: 487  KLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTRRME 666
            +  DD++KVEPHAFVHFASP +AT   D AGR +L  N ++L V+LGPE+ + +N RR  
Sbjct: 67   QRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRN 126

Query: 667  IDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFKGTS 846
              PF    V ++IG  VSRDEF +GW+GPP G DF +DPFDG+CK  F+++TAFSFKGT+
Sbjct: 127  TTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTT 186

Query: 847  LHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPFDLL 1026
             +AV+KCDFK EF VRDINE++ Y +    V+ LQL SSP ++YRTADD+I  +VPFDLL
Sbjct: 187  EYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLL 246

Query: 1027 DDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRI-IPYDCPAPKFH 1203
            DD+D WIRTTDFT +  IGRCN+YR+ + PR G KLK+A++YL++ R+ + Y     +  
Sbjct: 247  DDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRIS 306

Query: 1204 EEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSHDREVN 1383
            +EPDFG  M DPF+C   KE I FE++FLVNA +HKGIF+  QLS+ FF LLR   REVN
Sbjct: 307  DEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVN 366

Query: 1384 VAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPTKAYCL 1563
            VAAL +IYS + PVFD  +RL+TV   LL+NP + KS K L D  E+RRL+ITPTKA+CL
Sbjct: 367  VAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCL 426

Query: 1564 PPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSFPQKTL 1743
             PEVELSNR+LRKY+E ADRFLRVTFMDEG Q +N+NVLTYY A IVRD+T   F QKT 
Sbjct: 427  LPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTG 486

Query: 1744 VFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGKFTDKN 1923
            VF RV++IL DGFYLCGRKYSFLAFS+NQLRD SAWFFAE     V  I  WMGKFT++N
Sbjct: 487  VFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRN 546

Query: 1924 VAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEVADKLQ 2103
            +AKC ARMG CFSST+ATVEVP  +VN  LPDIERNGYVFSDGIGKITPDLAKEVA KL+
Sbjct: 547  IAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLK 606

Query: 2104 LTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQPGF 2283
            L  NPPCAYQIR+AGCKGVVACWPE+ D  RLS+R SM KF S HT LEI SWTRFQPGF
Sbjct: 607  LDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGF 666

Query: 2284 LNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTAAMMLG 2463
            LNRQII LLS   VPD VF  MQ TMV KL  IL +TD+AF+VLTSSC+EQGN AA+ML 
Sbjct: 667  LNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLS 726

Query: 2464 AGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFIQSS 2643
            AGFKPQTEPHLRG+LT +RA Q   L EK RIFVP GRWLMG  DELGVLEQGQCFIQ S
Sbjct: 727  AGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVS 786

Query: 2644 IPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLVDCL 2823
             PS+ENCF   G  F+ TK + +VI+G VV+AKNPCLHPGDIRILEAVD PGLHHL DCL
Sbjct: 787  NPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846

Query: 2824 VFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQRAINQS 3003
            VFPQKG+RPH NEASGSDLDGDLYFVTW++ LIPP K+SW PM Y PGET+++QR +N  
Sbjct: 847  VFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHK 906

Query: 3004 DIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTGKVVAM 3183
            DI+DFF KNMVNE LGTICN+HVVHADLS+YGA+DEKCI LAELAATAVDFPKTGK+V+M
Sbjct: 907  DIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSM 966

Query: 3184 PQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQVDDIPY 3363
            P  LKPK+YPDFMGKE++ SYKS+K+LG LYR IKD  D  + +S +  L      DI Y
Sbjct: 967  PANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINL---DSPDINY 1023

Query: 3364 DTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKYNNRXXXX 3543
            DTDLEV GSAD+I +AW +KC YD QL  LL Q+ VK EEEVVTGH+WSMPKY +R    
Sbjct: 1024 DTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGD 1083

Query: 3544 XXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHPRWVKKSV 3723
                   +Y ++R+EF+++F+++  + + L E E+N +YE+KASAWYQVTYHP+WV+K +
Sbjct: 1084 LKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKL 1143

Query: 3724 ELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADKI 3885
            EL+ SD      MLSFAW+ A+YL RIKIR +   ++D  KP+NSL  YLADKI
Sbjct: 1144 ELQKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1571 bits (4069), Expect = 0.0
 Identities = 771/1200 (64%), Positives = 921/1200 (76%), Gaps = 3/1200 (0%)
 Frame = +1

Query: 295  FERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITN 474
            FE  +   ++TQVS GGF     AK+L  ++E EIG+ +RCRLK SWTPPES  NF+I N
Sbjct: 3    FEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI-N 61

Query: 475  TRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNT 654
            T D+K  DD+ +VEPHAFVHF SPDS T   D AGR +L  N + L V+LGPE+ + +N 
Sbjct: 62   TADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNR 121

Query: 655  RRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSF 834
            RR    PF    V VEIG+ V +DEF   W+GPP G DF +DPFDG+CK  FT +TAFSF
Sbjct: 122  RRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSF 181

Query: 835  KGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVP 1014
            KGT  HAV+KCDFK EF VR+I E++ Y D    V+ L+L SSP + YRTADDDI  +VP
Sbjct: 182  KGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVP 241

Query: 1015 FDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRI--IPYDCP 1188
            FDLLDD+DPWIRTTDFT +  IGRCNSYR+ +PPR G KLK+A+ YL++ R+  +    P
Sbjct: 242  FDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWP 301

Query: 1189 APKFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSH 1368
             PK  +EPDFG    +PFF    +E ISFE++FLVNA +HKG  +  QLSD FF LLRS 
Sbjct: 302  -PKIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ 360

Query: 1369 DREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPT 1548
             +E+NVAAL ++ S ++PVFD  ERL+ VQ  LLKNPK++K  K L D AEVRRL+ITPT
Sbjct: 361  PKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPT 420

Query: 1549 KAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSF 1728
            KAYCLPPEVELSNR+LRKY+E ADRFLRVTFMDEG Q++NSNVL YYVAPIV+++T NSF
Sbjct: 421  KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSF 480

Query: 1729 PQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGK 1908
             QKT VF R +TIL DGFYLCGRKY+FLAFSSNQLRDRSAWFFAE  NI V  I SWMGK
Sbjct: 481  LQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGK 540

Query: 1909 FTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEV 2088
            F +KNVAKC ARMG CFSST+ATVEV   +VN ++PDI+RNGYVFSDGIG ITPDLA EV
Sbjct: 541  FNNKNVAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEV 599

Query: 2089 ADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTR 2268
            A+KL+L  NPPCAYQIRFAGCKGVVACWP K D FRLS+R SM KF+SKHT LEI SWTR
Sbjct: 600  AEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTR 659

Query: 2269 FQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTA 2448
            +QPGFLNRQII LLS L V D +F  MQ  MV KL  +L +TD+AFDVLT+SCAEQGN A
Sbjct: 660  YQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAA 719

Query: 2449 AMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQC 2628
            A+ML AGFKPQTEPHLRGMLT I+A Q   L EK RIFV  GRWLMG  DELGVLEQGQC
Sbjct: 720  AIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQC 779

Query: 2629 FIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHH 2808
            F+Q S P LE+CF+  G  F+  + +LQVIKG VV+AKNPCLHPGDIRILEAVD PGLHH
Sbjct: 780  FVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHH 839

Query: 2809 LVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQR 2988
            L DCLVFPQKGDRPH +EASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y P E +   R
Sbjct: 840  LYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGR 899

Query: 2989 AINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTG 3168
             + Q DI+DFFVKNM NE LG ICN+HVVHAD SDYGA+D  C+KLAELAA AVDFPKTG
Sbjct: 900  PVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTG 959

Query: 3169 KVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQV 3348
            K+V++PQ LKP++YPDF+GKED  SYKS K+LG LYR+++D+ D    D+   +   +  
Sbjct: 960  KIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYD---EDAATSSELHYFP 1016

Query: 3349 DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKYNN 3528
             DIPYD DLEVPG+ADF+ +AW++KC YDGQL  L+ Q+ VK EEE+VTGHVWS+PK N+
Sbjct: 1017 SDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNS 1076

Query: 3529 RXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHPRW 3708
            +           +YN++++EF+++F+NL  + + LT+ EKN + E+KASAWYQVTYHP+W
Sbjct: 1077 KKQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKW 1136

Query: 3709 VKKSVELRNSDDK-VATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADKI 3885
            VK+S  L+  D       MLSFAW+ A+YL RIKI+   V+H+D  KPINSL  YLAD+I
Sbjct: 1137 VKQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1566 bits (4054), Expect = 0.0
 Identities = 759/1197 (63%), Positives = 919/1197 (76%), Gaps = 1/1197 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            E  + D ++TQVS GGF   VTAKEL  ++E EIG+ +RCRLK SWTPPES+ NF+I++ 
Sbjct: 4    EERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDA 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
             D++  DD+ KVEPHAFVHFASP+S T++ D  GR QL  N + L  +LGPE+ F MN R
Sbjct: 64   ADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKR 123

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
            R    PF    V +EIG+ V  DEF + WKGP  G DF +DPFDG+CK  F ++TAFSFK
Sbjct: 124  RRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFK 183

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
            G + HAV+ CDFK EF VR+I E + Y + L  V+ L+LVSSP + YRTADDDI  +V F
Sbjct: 184  GLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLF 243

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIP-YDCPAP 1194
            DLLDD+DPWIRTTDFT    IGRCN YR+ +PPR G KLK+A+ YLK+ R+   +    P
Sbjct: 244  DLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPP 303

Query: 1195 KFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSHDR 1374
            +  +EP FG+PM D  F  H ++ ISF++LFLVNA +HKGI +  QLS+ FF+LLR+   
Sbjct: 304  RIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPE 363

Query: 1375 EVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPTKA 1554
            E+NVAAL ++ S K PVFD ++RL+ VQ  LL+NPK+IK+ K L D AEVRRL+ITPTKA
Sbjct: 364  EINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKA 423

Query: 1555 YCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSFPQ 1734
            YCLPPEVELSNR+LRKY+E ADRFLRVTFMDEG Q +NSNV+  YVAPIV+++T+N+FPQ
Sbjct: 424  YCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQ 483

Query: 1735 KTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGKFT 1914
            KT V+ R++ IL +GF+LCGRKYSFLAFSSNQLRDRSAWFFAE   I +  IK+WMG+FT
Sbjct: 484  KTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFT 543

Query: 1915 DKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEVAD 2094
            ++NVAKC ARMG CFSST+ATVEVP  QVN  LPDIERNGYVFSDGIG+ITPDLA EVA+
Sbjct: 544  NRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAE 603

Query: 2095 KLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQ 2274
            KL+L  +PP AYQIR+ GCKGVVACWP   D FRLS+R SM KF S HT LEI SWTR Q
Sbjct: 604  KLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQ 663

Query: 2275 PGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTAAM 2454
            PGFLNRQII LLSAL VPD +F  MQ TMV KL  +L +TD+AFDVLT+SCAEQGN+AA+
Sbjct: 664  PGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAI 723

Query: 2455 MLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFI 2634
            ML AGFKPQTEPHLRGMLT I+A Q   L EKTRIFVP GRWLMGC DELGVLEQGQCF+
Sbjct: 724  MLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFV 783

Query: 2635 QSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLV 2814
            Q S PSLENCF+  G  F  T  +LQVIKG VVVAKNPCLHPGDIRILEAVD PGLHHL 
Sbjct: 784  QVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLH 843

Query: 2815 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQRAI 2994
            DCLVFPQKG RPH +EASGSDLDGDLYFVTWDENLIPP K+SW PM+Y P E +   R++
Sbjct: 844  DCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSV 903

Query: 2995 NQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTGKV 3174
               D+++FFV+NMVNE LG ICN+HVVH+D S+YGA DE C+KLAELAA AVDFPKTGK+
Sbjct: 904  TSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKI 963

Query: 3175 VAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQVDD 3354
            V MP  LKPK+YPDFMGK+D+ SYKS K+LG LYR+I D+ D  V +S +         D
Sbjct: 964  VTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQN---HVPSD 1020

Query: 3355 IPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKYNNRX 3534
            + YD DLEVP +ADFI +AW+RKC YD QL  L+ Q+ +  EEE+VTGHVWSMPKY +R 
Sbjct: 1021 VKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRK 1080

Query: 3535 XXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHPRWVK 3714
                      +Y+++++EF++ F+ +    ++L + +KN+ YEQKASAWYQVTYHP WVK
Sbjct: 1081 QGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVK 1140

Query: 3715 KSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADKI 3885
            KS++L   D      MLSFAW+ A+YL RIKI+RR+V ++D +KPIN L  YLAD+I
Sbjct: 1141 KSLDLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1551 bits (4017), Expect = 0.0
 Identities = 757/1197 (63%), Positives = 920/1197 (76%), Gaps = 1/1197 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            E   K+ ++TQVS+GGFD+ V A++L K++E E+G+ WRCRLK SWTPPES  NF+IT+T
Sbjct: 4    EGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDT 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
              ++  D+++KVEPHAFVHFASP + T   D AGR +L  N ++L V+LGPE+ + +N R
Sbjct: 64   TVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRR 123

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
            R +  PF    V +EIGT  S DEF++GW+GPP G +F +DPFD +CK  F+++TAFSFK
Sbjct: 124  RRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFK 183

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
            GT+ HAV+KCDFK EF VR+INEV+ Y +   +V+ LQL SSP ++YRTADDD   TVPF
Sbjct: 184  GTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPF 243

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCPAP- 1194
             LLDD+D WIRTTDFT++  IGRCN+YR+ V PR G KLK+A++YL++ R+   D  +  
Sbjct: 244  GLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQL 303

Query: 1195 KFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSHDR 1374
            +  +EPDFG  M D F+  + KE I FE++FLVNA +HKGIF+  QLS  FF LLR+   
Sbjct: 304  RIRDEPDFGRSMSDHFYYIY-KEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSM 362

Query: 1375 EVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPTKA 1554
            EVNVAAL +IYS + PV+D  ERL+ V   LLKNPK+ KS   L D  E+RRL+ITPTKA
Sbjct: 363  EVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKA 422

Query: 1555 YCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSFPQ 1734
            YCL PEVELSNR+LRKY++ ADRFLRVTFMDEG Q +N+NVLTYY A IVRD+T  SF Q
Sbjct: 423  YCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQ 482

Query: 1735 KTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGKFT 1914
            KT VF RVK+IL DGFYLCGRKYSFLAFS+NQLRDR+AWFFAE   I V  I  WMGKFT
Sbjct: 483  KTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFT 542

Query: 1915 DKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEVAD 2094
            ++N+AKC ARMG CFSST+ATVEVP  QVN +LPDI+RNGY FSDGIGKITPDLA EVA 
Sbjct: 543  NRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQ 602

Query: 2095 KLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRFQ 2274
            KL+L  NPPCAYQIR+AGCKGVVACWPE+ D  RLS+R SMIKF S HT LEI SWTRFQ
Sbjct: 603  KLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQ 662

Query: 2275 PGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTAAM 2454
            PGFLNRQII LLS LGVPD VF  MQ +MV KL  +L +TD AF+V+ SSC EQG+T A+
Sbjct: 663  PGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAI 722

Query: 2455 MLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCFI 2634
            ML AGFKPQTEPHLRGMLT +RA Q   L EK+RIF+  GRWLMG  DELGVLEQGQCFI
Sbjct: 723  MLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFI 782

Query: 2635 QSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHLV 2814
            Q S PSL+NCF   G  F+ TK + +VIKG VV+AKNPCLHPGDIRILEAVD PGLHHL 
Sbjct: 783  QVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLY 842

Query: 2815 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQRAI 2994
            DCLVFPQKG+RPH NEASGSDLDGDLYFVTW+E LIPPSK+S  PM Y     ++L R++
Sbjct: 843  DCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSV 902

Query: 2995 NQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTGKV 3174
               DI++FF KNMVNE LG+ICN+HVVH+DLS++GA DEKCI LAELAA AVDFPKTGK+
Sbjct: 903  THKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKI 962

Query: 3175 VAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQVDD 3354
            V+MP +LKPK+YPDFMGKE+F SYKS K+LG LYR IKD+ D  V +S +     F   D
Sbjct: 963  VSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSE---LNFGASD 1019

Query: 3355 IPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKYNNRX 3534
            I YD DLE+ GSAD+I +AW +KC YDGQL  LL+Q+ VK EEEVVTG +WSMPKY ++ 
Sbjct: 1020 INYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKK 1079

Query: 3535 XXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHPRWVK 3714
                      +Y S+R+EF+++F+N+  + + L E EKN +YE+KASAWYQVTYHP WV+
Sbjct: 1080 LGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQ 1139

Query: 3715 KSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADKI 3885
            K +E +  D      MLSFAW+ A+YL RIK+R +  ++LD  KP+NSL  YLAD+I
Sbjct: 1140 KKLEFQKPDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1551 bits (4015), Expect = 0.0
 Identities = 767/1202 (63%), Positives = 916/1202 (76%), Gaps = 6/1202 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            E  +K L+  QVS GGFD++V A EL K++E E+G  WRCRLK S TP ES  +F +TNT
Sbjct: 4    EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNT 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
             +++  DD+EKVEPHAFVHFA P   T   D AGR +L LNG+ L V+LGPE+ F +N R
Sbjct: 64   AEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQR 123

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
                 PF    V VEIGT VSRDEF + W+GP  G DF +DPFDG+CK  FT++ AF+ K
Sbjct: 124  GRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALK 183

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
             ++ HAV+KC+FK EF VR+IN V+ Y +     + LQL SSP ++YRTADDDI   VPF
Sbjct: 184  SSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCPAP- 1194
            D+LDD+DPWIRTTDFT +  IGRCNSYRI +  R   KL + I YL + R+       P 
Sbjct: 244  DMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI 303

Query: 1195 KFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSHDR 1374
               EEPDF  PM DPFFC H +E ISFE++FLVNA +HKGI +  QLSD FF+LLR   R
Sbjct: 304  TIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR 363

Query: 1375 EVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPTKA 1554
            EVNVAAL +IYS K PVFD  +RL+ VQ  LLK+P++ K  K + D  EVRRL+ITPTKA
Sbjct: 364  EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKA 423

Query: 1555 YCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSFPQ 1734
            YCLPPEVELSNR+LRKY++ ADRFLRVTFMDEG Q +N+NVL+Y++APIVRD+T NSF Q
Sbjct: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483

Query: 1735 KTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGKFT 1914
            KT VF RV++IL  GFYLCGRK+SFLAFSS+QLRD SAWFF+E     V DIK WMG+FT
Sbjct: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543

Query: 1915 DKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEVAD 2094
            DKN+AKC ARMG CFSST+ATVEVP  +V+  LPDI+RNGYVFSDGIGKITPDLA EVA 
Sbjct: 544  DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603

Query: 2095 KLQLTSN-PPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTRF 2271
            KL+L  N PPCAYQIR+AGCKGVVACWP K D  R+S+R SM KFQS HT LEI SWTRF
Sbjct: 604  KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRF 663

Query: 2272 QPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTAA 2451
            QPGFLNRQII LLS L VPD +F  MQ +M+ KL  +L ++D+AF+VLT++CAEQGNTAA
Sbjct: 664  QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAA 723

Query: 2452 MMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQCF 2631
            +ML AGF PQTEPHLRGMLT IRA Q   L EK RIFVP GRWLMGC DELGVLE GQCF
Sbjct: 724  IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCF 783

Query: 2632 IQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHHL 2811
            IQ S P L NCFS  G  F+ TK  LQVIKG VV+AKNPCLHPGDIRILEAVD+P LHHL
Sbjct: 784  IQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842

Query: 2812 VDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQRA 2991
             DCLVFPQKGDRPH NEASGSDLDGDLYFVTWDENLIPPSK+SW PM+Y+  E + L R 
Sbjct: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902

Query: 2992 INQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTGK 3171
            ++Q DI++FF K+MVNE LGTICN+HVVHAD S+YGA+DE CI LAELAATAVDFPKTGK
Sbjct: 903  VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962

Query: 3172 VVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQVD 3351
            +V MP  LKPK+YPDFMGKE + SYKS K+LG LYR+ KD+        D+D     +VD
Sbjct: 963  IVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDA-------YDEDISVSSEVD 1015

Query: 3352 ----DIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPK 3519
                DI YDTDLEVP S DFI +AW++KC YDGQLN LLEQ+ V  EEE+VTGH+WSMPK
Sbjct: 1016 INPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK 1075

Query: 3520 YNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYH 3699
            YN+R           +Y+++R+EF++VF+ +  D + L+E EKN ++E+KASAWYQVTYH
Sbjct: 1076 YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYH 1135

Query: 3700 PRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLAD 3879
            P WVKKS++L+  D   +  +LSFAW+  +YL RIKIR R++ ++D  KP+N LA Y+AD
Sbjct: 1136 PEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVAD 1195

Query: 3880 KI 3885
            +I
Sbjct: 1196 RI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1531 bits (3963), Expect = 0.0
 Identities = 748/1204 (62%), Positives = 921/1204 (76%), Gaps = 5/1204 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +KDL++TQ+S+GGFD DV AK L++++E+++G  WRCRLK S TPP+S   FD+
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
               R  ++ D +EKV PHAFVHFAS +SA      AG N+L L  K L+V+LGPE+ + +
Sbjct: 61   DAERVQRMKD-YEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF F  V +E+G  VS+D+F++GW+GP  G DF +DPF+G+CKI FTK+TAF
Sbjct: 120  NQRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SF+G + HA++KC+FK EF VR+INE++   D  S V+ LQL SSPL++YRTADDDI  +
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            V FDLLDD+D WIRTTD T +  IGRCN+YRI + PR G   ++A+ Y    R+   +  
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1189 APKF---HEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELL 1359
              K     +EPDFG  M DPFFCF   E ISF+++FLVNA +HKGI +  Q+++ FF LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1360 RSHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLII 1539
            RSH  EVN+AAL +++S K PV D  ++L  ++  LLKNPK+++    L D  EVRRL+I
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1540 TPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTK 1719
            TPTKAYCLPP VELSNR+LR Y+  ADRFLRVTFMDEG + LN NVLTYY A IVR++T 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 1720 NSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSW 1899
            NS PQ+T +F RVK+IL  GF+LCGRKYSFLAFS+NQLRDRSAWFFAE   I+V  I SW
Sbjct: 479  NSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 1900 MGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLA 2079
            MG+F+++NVAKC ARMG CFSST+ATVEVP  +VN  LPDIERNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 2080 KEVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVS 2259
             EVA+KL L+ NPP AYQIR+AGCKGVVACWP K D  RLS+RPSM KF S HT+LEI S
Sbjct: 599  VEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICS 658

Query: 2260 WTRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQG 2439
            WTRFQPGFLNRQI+ LLS+L V D +F  MQ  M+  L  +L ++D+AFDV+T+SCAE G
Sbjct: 659  WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718

Query: 2440 NTAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQ 2619
            NTAA+ML AGFKPQ+EPHLRGML++IRA Q  DL  K RIFVP GRWLMGC DELG LEQ
Sbjct: 719  NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778

Query: 2620 GQCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPG 2799
            GQCFIQ S PSLENCF   GP FS  K +LQV+KG VV+AKNPCLHPGD+RILEAVD PG
Sbjct: 779  GQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838

Query: 2800 LHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQK 2979
            LHHL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E ++
Sbjct: 839  LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898

Query: 2980 LQRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFP 3159
            + R +N  DI+DFF KNMV E LG ICN+HVVHADLS++GA+DEKC+KLAELAA AVDFP
Sbjct: 899  MGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958

Query: 3160 KTGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV 3339
            KTGK+V MP +LKPKMYPDFMGKE+F SYKSKK+LG+LYR++KD     V D++ +  A 
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKD-----VCDTEGEVSAG 1013

Query: 3340 FQV--DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSM 3513
             ++  +DIPYD+ LE+PGS  FI +AW+ KC YDGQL+ LL Q+ V  EEEVVTGH+WSM
Sbjct: 1014 LELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 3514 PKYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVT 3693
            PKY+ +           AYN++R+EF+ VF+ +  D   L + EKN +YE+KASAWYQVT
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 3694 YHPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYL 3873
            Y+P WV +S+EL+  D   +T MLSFAW+ A+YL RIKIR R +++ D  KPINSL  YL
Sbjct: 1134 YNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYL 1193

Query: 3874 ADKI 3885
             D I
Sbjct: 1194 VDNI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1527 bits (3954), Expect = 0.0
 Identities = 748/1204 (62%), Positives = 919/1204 (76%), Gaps = 5/1204 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +KDL++TQ+S+GGFD DV AK L++++E+++G  WRCRLK S TPP+S   +D+
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
               R  ++ D +EKV PHAFVHFAS +SA      AG N L L  K L+V+LGPE+ + +
Sbjct: 61   DAARVHRMKD-YEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRL 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF F  V VE+G  VS+D+F++GW+GP  G DFF+DPF+G+CKI FTK+TAF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SF+G + HA++KC+FK EF VR+INE++ + D  S V+ LQL SSPL++YRTADDDI  +
Sbjct: 180  SFRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            V FDLLDD+D WIRTTD T +  IGRCN+YRI + PR G   ++A+ Y    R+   +  
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1189 APKF---HEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELL 1359
              K     +EPDFG  M DPFFCF   E ISF+++FLVNA +HKGI +  Q+++ FF LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1360 RSHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLII 1539
            RSH  EVN+AAL +++S K PV D  ++L  +Q  LLKNPK+++    L D  EVRRL+I
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1540 TPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTK 1719
            TPTKAYCLPP VELSNR+LR Y+  ADRFLRVTFMDEG + LN NVLTYY A IVR++T 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 1720 NSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSW 1899
            NS PQ+T +F RVK+IL  GF+LCGRKYSFLAFS+NQLRDRSAWFFAE   I+V  I SW
Sbjct: 479  NSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 1900 MGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLA 2079
            MG+F+++NVAKC ARMG CFSST+ATVEVP  +VN  LPDIERNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 2080 KEVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVS 2259
             EVA+KL L+ NPP AYQIR+AGCKGVVACWP K D   LS+RPSM KF S HT+LEI S
Sbjct: 599  LEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICS 658

Query: 2260 WTRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQG 2439
            WTRFQPGFLNRQI+ LLS+L V D +F  MQ  M+  L  +L ++D+AFDV+T+SCAE G
Sbjct: 659  WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAG 718

Query: 2440 NTAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQ 2619
            NTAA+ML AGFKPQ+EPHLRGML++IRA Q  DL  K RIFVP GRWLMGC DELG LEQ
Sbjct: 719  NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778

Query: 2620 GQCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPG 2799
            GQCFIQ S PSLENCF   GP FS  K +LQV+KG VV+AKNPCLHPGD+RILEAVD PG
Sbjct: 779  GQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838

Query: 2800 LHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQK 2979
            LHHL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E ++
Sbjct: 839  LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898

Query: 2980 LQRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFP 3159
            L R +N  DI+DFF KNMV E LG ICN+HVVHADLS++GA+DEKC+KLAELAA AVDFP
Sbjct: 899  LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958

Query: 3160 KTGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV 3339
            KTGK+V MP +LKPKMYPDFMGKE+F SYKSKK+LG+LYR++KD     V D++ +  A 
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKD-----VCDTEGEVSAG 1013

Query: 3340 FQV--DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSM 3513
             ++  +DIPYD+ LE+PGS  F+ +AW+ KC YDGQL+ LL Q+ V  EEEVVTGH+WSM
Sbjct: 1014 LELVPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 3514 PKYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVT 3693
            PKY+ +           AYN +R+EF+ VF+ +  D   L + EKN +YE+KASAWYQVT
Sbjct: 1074 PKYSAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 3694 YHPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYL 3873
            Y+P WV +S+EL+  D   +T MLSFAW+ A+YL RI IR R +++ D  KPINSL  YL
Sbjct: 1134 YNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYL 1193

Query: 3874 ADKI 3885
             D I
Sbjct: 1194 VDNI 1197


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 1524 bits (3947), Expect = 0.0
 Identities = 739/1203 (61%), Positives = 915/1203 (76%), Gaps = 4/1203 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +K +++TQVS GGFD DV A++L  ++E EIG+  RCRLK SWTPPES  +F++
Sbjct: 1    MGSEEGEK-IVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 59

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
            +N  ++  +DD++KV PHAFVHF SPDSA      AGR +L  N K+L  +LGPES F +
Sbjct: 60   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHI 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF    V V+IG     D F + W+GP  G DF +DPFDG+CK  FTK+TAF
Sbjct: 120  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SFK  + H  LKCD+K EF VRDIN++  Y D   +V+ LQL SSP ++YRTADDDI   
Sbjct: 180  SFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKL 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRI--IPYD 1182
            VP+DLLDD+DPWIRTTDFT +  IGRCN++R+ VPPR G KL  A+ YLK+ R+  +  +
Sbjct: 240  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLN 299

Query: 1183 CPAPKFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLR 1362
             P PK   EPD+G  M D FFC   K+ ISFE+LFLVNA +HKGI +  Q+SDRFF+LLR
Sbjct: 300  RP-PKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLR 358

Query: 1363 SHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIIT 1542
            +   EVN+AAL++I++ + PV D  ++L+ VQ  LLKNP ++K  K L D  E+RRL+IT
Sbjct: 359  NQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVIT 418

Query: 1543 PTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKN 1722
            P+KAYC PPEVELSNR+LR+Y++ ADRFLRVTFMDEG +++NS+V TYYVAPIV+++T +
Sbjct: 419  PSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSS 478

Query: 1723 SFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWM 1902
            SFPQKT +F R+K ILK GF+LCGRKYSFLA+SSNQLRD+SAWFFAE  +I V  I  WM
Sbjct: 479  SFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWM 538

Query: 1903 GKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAK 2082
            GKFT+KNVAKC AR+G CFSST+AT+EVP   VN +L D+ERNGYVFSDGIG ITPDLA+
Sbjct: 539  GKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQ 598

Query: 2083 EVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSW 2262
            EVADKL++  +PPCAYQIR+AG KGVVA WP K D  RL++RPSM KF+S H +LEI SW
Sbjct: 599  EVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSW 658

Query: 2263 TRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGN 2442
            TRFQPGFLNRQII LLS L VPD +F  MQ TM+ KL  ++ +TD+AF+VLT+SCAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGN 718

Query: 2443 TAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQG 2622
             AA+ML AGF+P+TEPHLRGML  IRA Q   L EK RIFV +GRW MGCFDE GVL++G
Sbjct: 719  AAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEG 778

Query: 2623 QCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGL 2802
            QCFIQ S P LE CFS  G  F+ TK +L V++GTVV+AKNPCLHPGD+RILEAVD P L
Sbjct: 779  QCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPEL 838

Query: 2803 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKL 2982
            HHL DCLVFP+ G+RPH NEASGSDLDGDLYF TWD NLIPPSK+SW PM+Y+P E + L
Sbjct: 839  HHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTL 898

Query: 2983 QRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPK 3162
            QR I + DI++FF KNM+NE LGTICN+HVVHAD S +GA+DE CI+L+ELAATAVDFPK
Sbjct: 899  QRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPK 958

Query: 3163 TGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV- 3339
            TGK+V MP  LKPK+YPDFMGKE   SYKS K+LG++YRRI+D+ D    D D  T    
Sbjct: 959  TGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYD----DDDMITSREL 1014

Query: 3340 -FQVDDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMP 3516
             F   D+ YD DLEV G+ DFI EAWD+KC YDGQL+ LL Q+ V  EEE+VTGH+WSMP
Sbjct: 1015 NFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMP 1074

Query: 3517 KYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTY 3696
            KY +R           +Y++++++F++VF+NLG + + LT  E+N +YE+KASAWYQV Y
Sbjct: 1075 KYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAY 1134

Query: 3697 HPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLA 3876
            HP W+KKS+ELR  D   A PMLSF W+ A+YL RIKI+ R  K  D  KPINSLA YL+
Sbjct: 1135 HPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLS 1194

Query: 3877 DKI 3885
            D++
Sbjct: 1195 DRM 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1524 bits (3945), Expect = 0.0
 Identities = 749/1204 (62%), Positives = 915/1204 (75%), Gaps = 5/1204 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +K+L++TQ+S+GGFD DV AK L++++E+++G  WRCRLK S TPP+S   +DI
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
               R  ++N+ +EKV PHAFVHFAS +SA      AG N+L L  K L+V+LGPE+ + +
Sbjct: 61   DAERVQRMNN-YEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRL 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF F  V VE+G  VS+ +F++GW+GP  G DF +DPF+G+CKI FTK+T F
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SF+G + HA++KC+FK EF VR+INE++   D +S V+ LQL SSPL++YRTADDDI  +
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEES 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            V FDLLDD+D WIRTTD T +  IGRCN+YRI + PR G   ++A+ Y    R+   +  
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1189 APKF---HEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELL 1359
              K     +EPDFG  M DPFFCF   E ISF++LFL NA +HKGI +  Q+ + FF LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLL 358

Query: 1360 RSHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLII 1539
            RSH  EVN+AAL +++S K PV D  ++L  +Q  LLKNPK+++    L D  EVRRL+I
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1540 TPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTK 1719
            TPTKAYCLPP VELSNR+LR Y+  ADRFLRVTFMDEG + LN NVLTYY A IVR++T 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 1720 NSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSW 1899
            NS PQ+T +F RVK+IL  GF+LCGRKYSFLAFS+NQLRDRSAWFFAE   I+V  I SW
Sbjct: 479  NSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 1900 MGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLA 2079
            MG+F+++NVAKC ARMG CFSST+ATVEVP  +VN  LPDIERNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 2080 KEVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVS 2259
             EVA+KL L+ NPP AYQIR+AGCKGVVACWP K D  RLS+RPSM KF S HT+LEI S
Sbjct: 599  IEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICS 658

Query: 2260 WTRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQG 2439
            WTRFQPGFLNRQI+ LLS+L V D +F  MQ  M+  L  +L ++D+AFDV+T+SCAE G
Sbjct: 659  WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAG 718

Query: 2440 NTAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQ 2619
            NTAA+ML AGFKPQ+EPHLRGML++IRA Q  DL  K RIFVP GRWLMGC DELG LEQ
Sbjct: 719  NTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778

Query: 2620 GQCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPG 2799
            GQCFIQ S PSLENCF   G  FS  K +LQV+KG VV+AKNPCLHPGD+RILEAVD P 
Sbjct: 779  GQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPS 838

Query: 2800 LHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQK 2979
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDEN+IPPSK+SWIPM+Y P E ++
Sbjct: 839  LSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQ 898

Query: 2980 LQRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFP 3159
            L R +N  DI+DFF KNMV E LG ICN+HVVHADLS++GA+DEKC+KLAELAA AVDFP
Sbjct: 899  LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958

Query: 3160 KTGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV 3339
            KTGK+V MP +LKPKMYPDFMGKE+F SYKSKK+LG+LYR++KD     V D++ +  A 
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKD-----VCDAEGEVSAG 1013

Query: 3340 FQV--DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSM 3513
             +V   DIPYDT LE+ GS  FI +AW+ KC YDGQLN LL Q+ V  EEEVVTGH+WSM
Sbjct: 1014 LEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSM 1073

Query: 3514 PKYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVT 3693
            PKY+ +           AYN++R+EF+ VF+ +  D   L + EKN +YE+KASAWYQVT
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 3694 YHPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYL 3873
            YHP WV +S+EL+  D   +T MLSFAW+ A+YL RIKIR R + + D  KPINSL  YL
Sbjct: 1134 YHPHWVARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYL 1193

Query: 3874 ADKI 3885
            ADKI
Sbjct: 1194 ADKI 1197


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1523 bits (3944), Expect = 0.0
 Identities = 749/1200 (62%), Positives = 904/1200 (75%), Gaps = 4/1200 (0%)
 Frame = +1

Query: 298  ERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDITNT 477
            E  +KD ++TQ+S+GGFD+ V AK+L  F+E E+GI +RCRLK S T  ES   F+  N+
Sbjct: 4    EGSEKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINS 63

Query: 478  RDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLMNTR 657
             ++  + D  +VEPHAFVHFASP+S          N L LN + L V LGPE+ + MN R
Sbjct: 64   ENIMESIDIRQVEPHAFVHFASPESVNWTLS----NPLMLNNQTLKVTLGPETLYRMNQR 119

Query: 658  RMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAFSFK 837
            R    P     V VEIG  V RDEF + W+GP  G DF +DPFDG CK  FT++TAFSFK
Sbjct: 120  RRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFK 179

Query: 838  GTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHATVPF 1017
              +  A++KCDFK EF VRDINE++ Y D    V+ L L SSP ++YRTADDDI  +VPF
Sbjct: 180  DMAKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPF 239

Query: 1018 DLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP--- 1188
            DLLDD+DPWIRTTDFT +  IGRCNSYR+ +PPR G KLK+A+ YL++ R+   + P   
Sbjct: 240  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRV--QETPLRK 297

Query: 1189 APKFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRSH 1368
            A +   EPDF  PM DP F  H K  I FE++FL+N  +HKGIF+   +SD  F+L R+ 
Sbjct: 298  ALRIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQ 357

Query: 1369 DREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITPT 1548
             RE+N+AAL +I S K PVFD   +L+ VQ  LL+NPK++K  + L D AEVRRL+ITPT
Sbjct: 358  PREINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPT 417

Query: 1549 KAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNSF 1728
            +AYCLPPEVELSNR+LRKY+E +DRFLRVTFMDEG Q +N NVLTYY APIV+++T NS 
Sbjct: 418  RAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNST 477

Query: 1729 PQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMGK 1908
             QKT VF RVK++L DGFYLCG++YSFLAFSSNQLRDRSAWFFAE   I V+ IK WMG+
Sbjct: 478  SQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGR 537

Query: 1909 FTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKEV 2088
            F ++N+AKC ARMG CFSST+ATVEVP  +VN +L +IERN YVFSDGIG ITPDLAKEV
Sbjct: 538  FNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEV 597

Query: 2089 ADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSWTR 2268
            A+KL+L  NPP AYQIR+AGCKGVVACWP K D  RLS+R SM KF SKHT+LEI SWTR
Sbjct: 598  AEKLKLDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTR 657

Query: 2269 FQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGNTA 2448
            FQPGFLNRQI+ LLS L V D +F  MQ TM+ KL  +L + D+AF+VLT+SC EQGN  
Sbjct: 658  FQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVG 717

Query: 2449 AMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQGQC 2628
            A+ML AGFKPQ+EPHL+GMLT IRA Q   L EK RIFVP GRWLMGC DELGVLEQGQC
Sbjct: 718  AIMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQC 777

Query: 2629 FIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGLHH 2808
            FIQ S PSLENCFS  G  FS TK +L+VIKG VV+AKNPCLHPGDIRILEAVD PGLHH
Sbjct: 778  FIQVSTPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHH 837

Query: 2809 LVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKLQR 2988
            L DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSK+SW PM Y P + + L R
Sbjct: 838  LYDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPR 897

Query: 2989 AINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPKTG 3168
             + Q DI+DFF +NMVNE LG ICN+HVVHADLSDYGA+DEKC+ LAELAA AVDFPKTG
Sbjct: 898  DVTQKDIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTG 957

Query: 3169 KVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVFQV 3348
             +V MP  LKPK+YPDFMGKE++ SYKS K++G LYR+IKD     V  S +  +     
Sbjct: 958  IIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIV---S 1014

Query: 3349 DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKYNN 3528
             +IP+DTDLEVPG+ADF+ +AW++KC YDGQL  L+ Q+ VK EEEVVTG +WSMPK+N+
Sbjct: 1015 SNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNS 1074

Query: 3529 RXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHPRW 3708
            R           +Y  +R+EF++VF+ +  D + LT+ EKN +YE++ASAWYQ+TYHP+W
Sbjct: 1075 RKEGDLKERLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKW 1134

Query: 3709 VKKSVELRNSDDKVA-TPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLADKI 3885
            VKKS ++ +  ++V    MLSFAW+ A+YL RIKIR R V   D  KPINSL  YLAD+I
Sbjct: 1135 VKKSQDMHDQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score = 1523 bits (3944), Expect = 0.0
 Identities = 738/1203 (61%), Positives = 915/1203 (76%), Gaps = 4/1203 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +K +++TQVS GGFD DV A++L  ++E EIG+  RCRLK SWTPPES  +F++
Sbjct: 1    MGSEEGEK-IVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 59

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
            +N  ++  +DD++KV PHAFVHF SPDSA      AGR +L  N K+L  +LGPES F +
Sbjct: 60   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHI 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF    V V+IG     D F + W+GP  G DF +DPFDG+CK  FTK+TAF
Sbjct: 120  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SFK  + H  LKCD+K EF VRDIN++  Y D   +V+ LQL +SP ++YRTADDDI   
Sbjct: 180  SFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKL 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRI--IPYD 1182
            VP+DLLDD+DPWIRTTDFT +  IGRCN++R+ VPPR G KL  A+ YLK+ R+  +  +
Sbjct: 240  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLN 299

Query: 1183 CPAPKFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLR 1362
             P PK   EPD+G  M D FFC   K+ ISFE+LFLVNA +HKGI +  Q+SDRFF+LLR
Sbjct: 300  RP-PKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLR 358

Query: 1363 SHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIIT 1542
            +   EVN+AAL++I++ + PV D  ++L+ VQ  LLKNP ++K  K L D  E+RRL+IT
Sbjct: 359  NQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVIT 418

Query: 1543 PTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKN 1722
            P+KAYC PPEVELSNR+LR+Y++ ADRFLRVTFMDEG +++NS+V TYYVAPIV+++T +
Sbjct: 419  PSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSS 478

Query: 1723 SFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWM 1902
            SFPQKT +F R+K ILK GF+LCGRKYSFLA+SSNQLRD+SAWFFAE  +I V  I  WM
Sbjct: 479  SFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWM 538

Query: 1903 GKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAK 2082
            GKFT+KNVAKC AR+G CFSST+AT+EVP   VN +L D+ERNGYVFSDGIG ITPDLA+
Sbjct: 539  GKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQ 598

Query: 2083 EVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSW 2262
            EVADKL++  +PPCAYQIR+AG KGVVA WP K D  RL++RPSM KF+S H +LEI SW
Sbjct: 599  EVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSW 658

Query: 2263 TRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGN 2442
            TRFQPGFLNRQII LLS L VPD +F  MQ TM+ KL  ++ +TD+AF+VLT+SCAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGN 718

Query: 2443 TAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQG 2622
             AA+ML AGF+P+TEPHLRGML  IRA Q   L EK RIFV +GRW MGCFDE GVL++G
Sbjct: 719  AAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEG 778

Query: 2623 QCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGL 2802
            QCFIQ S P LE CFS  G  F+ TK +L V++GTVV+AKNPCLHPGD+RILEAVD P L
Sbjct: 779  QCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPEL 838

Query: 2803 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKL 2982
            HHL DCLVFP+ G+RPH NEASGSDLDGDLYF TWD NLIPPSK+SW PM+Y+P E + L
Sbjct: 839  HHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTL 898

Query: 2983 QRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPK 3162
            QR I + DI++FF KNM+NE LGTICN+HVVHAD S +GA+DE CI+L+ELAATAVDFPK
Sbjct: 899  QRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPK 958

Query: 3163 TGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV- 3339
            TGK+V MP  LKPK+YPDFMGKE   SYKS K+LG++YRRI+D+ D    D D  T    
Sbjct: 959  TGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYD----DDDMITSREL 1014

Query: 3340 -FQVDDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMP 3516
             F   D+ YD DLEV G+ DFI EAWD+KC YDGQL+ LL Q+ V  EEE+VTGH+WSMP
Sbjct: 1015 NFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMP 1074

Query: 3517 KYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTY 3696
            KY +R           +Y++++++F++VF+NLG + + LT  E+N +YE+KASAWYQV Y
Sbjct: 1075 KYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAY 1134

Query: 3697 HPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLA 3876
            HP W+KKS+ELR  D   A PMLSF W+ A+YL RIKI+ R  K  D  KPINSLA YL+
Sbjct: 1135 HPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLS 1194

Query: 3877 DKI 3885
            D++
Sbjct: 1195 DRM 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1522 bits (3941), Expect = 0.0
 Identities = 750/1204 (62%), Positives = 914/1204 (75%), Gaps = 5/1204 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +K+L++TQ+S+GGFD DV AK L++++E+++G  WRCRLK S TPP+S   +DI
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
               +  ++N+ +EKV PHAFVHFAS +SA      AG N+L L  K L+V+LGPE+ + +
Sbjct: 61   DAEKVQRMNN-YEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF F  V VE+G  VS+D+F++GW+GP  G DF +DPF+G+CKI FTK+TAF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SF+G + HA++KC+FK EF VR+INE++   D  S V+  QL SSPL++YRTADDDI  +
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEES 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            V FDLLDD+D WIRTTD T +  IGRCN+YRI + PR G   ++A+ Y    R+   +  
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMC 299

Query: 1189 APKF---HEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELL 1359
              K     +EPDFG  M DPFFCF   E ISF +LFLVNA +HKGI +  Q+++ FF LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLL 358

Query: 1360 RSHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLII 1539
            RSH  EVN AAL +++S K PV D  ++L  +Q  LLKNPK++     L D  EVRRL+I
Sbjct: 359  RSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVI 418

Query: 1540 TPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTK 1719
            TPTKAYCLPP VELSNR+LR Y+  ADRFLRVTFMDEG + LN NVLTYY A IVR++T 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 1720 NSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSW 1899
            NS PQ+T +F RVK+IL  GF+LCGRKYSFLAFS+NQLRDRSAWFFAE   I+V  I SW
Sbjct: 479  NSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 1900 MGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLA 2079
            MG+F+++NVAKC ARMG CFSST+ATVEVP  +VN  LPDIERNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 2080 KEVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVS 2259
             EVA+KL L+ NPP AYQIR+AGCKGVVACWP K D  RLS+RPSM KF S HT+LEI S
Sbjct: 599  IEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICS 658

Query: 2260 WTRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQG 2439
            WTRFQPGFLNRQI+ LLS+L V D +F  MQ  M+  L  +L ++D+AFDV+T+SCAE G
Sbjct: 659  WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718

Query: 2440 NTAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQ 2619
            NTAA+ML AGFKPQ+EPHLRGML++IRA Q  DL  K RIFVP GRWLMGC DELG LEQ
Sbjct: 719  NTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778

Query: 2620 GQCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPG 2799
            GQCFIQ S PSLENCF   GP FS  K +LQV+KG VV+AKNPCLHPGD+RILEAVD P 
Sbjct: 779  GQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPS 838

Query: 2800 LHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQK 2979
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E ++
Sbjct: 839  LSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898

Query: 2980 LQRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFP 3159
            L R +N  DI+DFF KNMV E LG ICN+HVVHADLS++GA+DEKC+KLAELAA AVDFP
Sbjct: 899  LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958

Query: 3160 KTGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV 3339
            KTGK+V MP +LKPKMYPDFMGKE+F SYKSKK+LG+LYR++KD     V D++ +  A 
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKD-----VCDAEGEVSAG 1013

Query: 3340 FQV--DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSM 3513
             +V   DIPYDT LE+ GS  FI +AW+ KC YDGQLN LL Q+ V  EEEVVTG++WSM
Sbjct: 1014 LEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSM 1073

Query: 3514 PKYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVT 3693
            PKYN +           AYN++R+EF+ VF+ +  D   L + EKN +YE+KASAWYQVT
Sbjct: 1074 PKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 3694 YHPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYL 3873
            YHP WV +S+EL+ +D    T MLSFAW+ A+YL RIKIR R +++ D  KPINSL  YL
Sbjct: 1134 YHPHWVARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYL 1193

Query: 3874 ADKI 3885
             D I
Sbjct: 1194 VDNI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1518 bits (3929), Expect = 0.0
 Identities = 748/1204 (62%), Positives = 914/1204 (75%), Gaps = 5/1204 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +K+L++TQ+S GGFD DV AK L++++E+++G  WRCRLK S TPP+S   +DI
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
               +  ++N+ +EKV PHAFVHFAS +SA      AG N+L L  K L+V+LGPE+ + +
Sbjct: 61   DAEKVQRMNN-YEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF F  V VE+G  VS+D+F++GW+GP  G DFF+DPF+G+CKI FTK+TAF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SF+G + HA++KC+FK EF VR+INE++   D  S V+ LQL SSPL++YRTADDDI  +
Sbjct: 180  SFRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            V FDLLDD+D WIRTTD T +  IGRCN+YRI + PR G   ++A+ Y    R+   +  
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1189 APKF---HEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELL 1359
              K     +EPDFG  M DPFFCF   E ISF+++FLVNA +HKGI +  Q+++ FF LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1360 RSHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLII 1539
            RS   EVN AAL +++S K PV D  ++L  +Q  LLKNPK++     L D  EVRRL+I
Sbjct: 359  RSRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVI 418

Query: 1540 TPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTK 1719
            TPTKAYCLPP VELSNR+LR Y+  ADRFLRVTFMDEG + LN NVLTYY A IVR++T 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 1720 NSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSW 1899
            NS PQ+T +F RVK+IL  GF+LCGRKYSFLAFS+NQLRDRSAWFFAE   I+V  I SW
Sbjct: 479  NSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 1900 MGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLA 2079
            MG+F+++NVAKC ARMG CFSST+ATVEVP  +VN  LPDIERNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 2080 KEVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVS 2259
             EVA+KL L+ NPP AYQIR+AGCKGVVACWP K D  RLS+RPSM KF S HT+LEI S
Sbjct: 599  IEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICS 658

Query: 2260 WTRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQG 2439
            WTRFQPGFLNRQI+ LLS+L V D +F  MQ  M+  L  +L ++D+AFDV+T+SCAE G
Sbjct: 659  WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718

Query: 2440 NTAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQ 2619
            NTAA+ML AGFKPQ+EPHLRGML++IRA Q  DL  K RIFVP GRWLMGC DELG LEQ
Sbjct: 719  NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778

Query: 2620 GQCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPG 2799
            GQCFIQ S PSLENCF   GP FS  K +LQV+KG VV+AKNPCLHPGD+RILEAVD P 
Sbjct: 779  GQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPS 838

Query: 2800 LHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQK 2979
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E ++
Sbjct: 839  LSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898

Query: 2980 LQRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFP 3159
            L R +N  DI+DFF KNMV E LG ICN+HVVHADLS++GA+DEKC+KLAELAA AVDFP
Sbjct: 899  LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958

Query: 3160 KTGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV 3339
            KTGK+V MP +LKPKMYPDFMGKE+F SYKSKK+LG+LYR++KD     V D++ +  A 
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKD-----VCDAEGEVSAG 1013

Query: 3340 FQV--DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSM 3513
             +V   DIPYD+ LE+ GS  FI +AW+ KC YDGQL+ LL Q+ V  EEEVVTGH+WSM
Sbjct: 1014 LEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 3514 PKYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVT 3693
            PKY+ +           AYN++R+EF+ VF+ +  D   L + EKN +YE+KASAWYQVT
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 3694 YHPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYL 3873
            YHP WV +S+EL+  D    T MLSFAW+ A+YL RIKIR R +++ D  KPINSL  YL
Sbjct: 1134 YHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYL 1193

Query: 3874 ADKI 3885
             D I
Sbjct: 1194 VDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1514 bits (3920), Expect = 0.0
 Identities = 747/1204 (62%), Positives = 913/1204 (75%), Gaps = 5/1204 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E  +KDL++TQ+S+GGFD DV AK L++++E+++G  WRCRLK S TPP+S   +DI
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
               R  ++ D +EKV PHAFVHFAS +SA      AG N+L L  K L+V+LGPE+ + +
Sbjct: 61   DAERVHRMKD-YEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    PF F  V VE+G  VS+D+F++GW+GP  G DF +DPF+G+CKI FTK+TAF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAF 179

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SF+G + HA++KC+FK EF VR+INE++   D  S V+  QL SSPL++YRTADDDI  +
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEES 239

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            V FDLLDD+D WIRTTD T +  IGRCN+YRI + PR G   ++A+ Y    R+   +  
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMC 299

Query: 1189 APKF---HEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELL 1359
              K     +EPDFG  M DPFFCF   E ISF+++FLVNA +HKGI +  Q+++ FF LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1360 RSHDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLII 1539
            RS   EVN+AAL +++S K PV D  ++L  +Q  LLKNPK+++    L D  EVRRL+I
Sbjct: 359  RSRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1540 TPTKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTK 1719
            TPTKAYCLPP VELSNR+LR Y+  ADRFLRVTFMDEG + LN NVLTYY A IVR++T 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 1720 NSFPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSW 1899
            NS PQ+T +F RVK+IL  GF+LCGRKYSFLAFS+NQLRDRSAWFFAE   I+V  I SW
Sbjct: 479  NSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 1900 MGKFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLA 2079
            MG+F+++NVAKC ARMG CFSST+ATVEVP  +VN  LPDIERNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 2080 KEVADKLQLTSNPPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVS 2259
             EVA+KL L  NPP AYQIR+AG KGVVACWP K D   LS+RPSM KF S HT+LEI S
Sbjct: 599  IEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICS 658

Query: 2260 WTRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQG 2439
            WTRFQPGFLNRQI+ LLS+L V D +F  MQ  M+  L  +L ++D+AFDV+T+SCAE G
Sbjct: 659  WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718

Query: 2440 NTAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQ 2619
            NTAA+ML AGFKPQ+EPHLRGML++IRA Q  DL  K RIFVP GRWLMGC DELG LEQ
Sbjct: 719  NTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778

Query: 2620 GQCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPG 2799
            GQCFIQ S PSLENCF   GP FS  K +LQV+KG VV+AKNPCLHPGD+RILEAVD P 
Sbjct: 779  GQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPS 838

Query: 2800 LHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQK 2979
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E ++
Sbjct: 839  LSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898

Query: 2980 LQRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFP 3159
            L R +N  DI+DFF KNMV E LG ICN+HVVHADLS++GA+DEKC+KLAELAA AVDFP
Sbjct: 899  LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958

Query: 3160 KTGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAV 3339
            KTGK+V MP +LKPKMYPDFMGKE+F SYKSKK+LG+LYR++KD     V D++ +  A 
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKD-----VCDAEGEVSAG 1013

Query: 3340 FQV--DDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSM 3513
             +V   DIPYDT L +PGS  FI +AW+ KC YDGQL+ LL Q+ V  EEEVVTGH+WSM
Sbjct: 1014 LEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 3514 PKYNNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVT 3693
            PKY+ +           AYN++R+EF+ VF+ +  D   L + EKN +YE+KASAWYQVT
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 3694 YHPRWVKKSVELRNSDDKVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYL 3873
            Y+P WV +S+EL+  D   +T MLSFAW+ A+YL RIKIR R +++ D  KPINSL  YL
Sbjct: 1134 YNPHWVARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYL 1193

Query: 3874 ADKI 3885
             DKI
Sbjct: 1194 VDKI 1197


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score = 1508 bits (3903), Expect = 0.0
 Identities = 727/1202 (60%), Positives = 911/1202 (75%), Gaps = 3/1202 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E   K+ ++TQVS+GGF +  TAK+L  ++E E+G+ WRCRLK SWTPP S  NF+I
Sbjct: 1    MGSEGSMKNSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEI 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
             +T  +   DD++KVEPHAFVHFA P+SA    D AG+  L L+G+ L V+LGP++ + +
Sbjct: 61   ADTSSIPKFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTL 120

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    P+   G+ +EIGT VSRDEFL+ W+    G DF +DPFD +CK  F K TAF
Sbjct: 121  NQRRRTTTPYKLAGISLEIGTLVSRDEFLVSWRAD--GVDFLVDPFDNTCKFCFRKSTAF 178

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            SFK   +HAV+ CD+K E  VRDI  VR Y +   +V+ LQL SSP ++YRTADDDIH T
Sbjct: 179  SFKDAVMHAVINCDYKLELLVRDIQTVRQYKNSHGYVLILQLASSPRVWYRTADDDIHDT 238

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            +P DLLDD+DPWIRTTDFT    IGRC+SYR+ + PR  KKL  A+EYL+  R+      
Sbjct: 239  IPVDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVR 298

Query: 1189 -APKFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRS 1365
              P+   EP FG P+ D FFC H KE ISFE++FLVN+ +H+G+F+ FQL++RFF+LLR+
Sbjct: 299  WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358

Query: 1366 HDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITP 1545
              ++VN+A+L ++ + K PVFD  +RL+ VQ  +LKNPK++   +   D +E+RRL+ITP
Sbjct: 359  QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIRRLVITP 418

Query: 1546 TKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNS 1725
            T+AYCLPPEVELSNR+LRKYR  A+RFLRVTFMDE  Q +NSNVL+Y+VAPIV+D+T +S
Sbjct: 419  TRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478

Query: 1726 FPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMG 1905
            F QKT VF RVK+IL DGF LCGRKYSFLAFS+NQLRD SAWFFAE    +VSDIK+WMG
Sbjct: 479  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKAWMG 538

Query: 1906 KFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKE 2085
            KF DKNVAKC ARMG+CFSST+ATV+V   +VN  LPDIERNGYVFSDGIG ITPDLA E
Sbjct: 539  KFKDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNGYVFSDGIGTITPDLADE 598

Query: 2086 VADKLQLTSN-PPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSW 2262
            V +KL+L  +  PCAYQIR+AG KGVVA WP K D  RL++R SM KF SKHT+LEI SW
Sbjct: 599  VMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSKHTILEICSW 658

Query: 2263 TRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGN 2442
            TRFQPGFLNRQII LLS LGVPD +F  MQ +M++KL  IL++TD+AF+VLT+SCAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 718

Query: 2443 TAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQG 2622
            TAA+ML AGFKP+TEPHLRGML+++R  Q   L EK+RIFV  GRWLMGC DE G LE G
Sbjct: 719  TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGKLEHG 778

Query: 2623 QCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGL 2802
            QCFIQ S PS+ENCFS  G  F  TK DL+V+KG V +AKNPCLHPGD+RILEAVD P L
Sbjct: 779  QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838

Query: 2803 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKL 2982
            HH+ DCL+FP+KGDRPH NEASGSDLDGDLYFV WD+ LIPP+++S+  M Y   E + L
Sbjct: 839  HHMYDCLIFPKKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKTL 898

Query: 2983 QRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPK 3162
             RA+N  DI+DFF +NM NE LGTICN+HVVHAD S+YGAMDE+C+ LAELAATAVD PK
Sbjct: 899  GRAVNHQDIIDFFARNMANEHLGTICNAHVVHADRSEYGAMDEECVLLAELAATAVDSPK 958

Query: 3163 TGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVF 3342
            TGK+V+MP  LKPK+YPDFMGKED+ +YKS K+LG LYRR+K+  D    D++  +    
Sbjct: 959  TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSSKILGRLYRRVKEVYD---EDAEASSEESS 1015

Query: 3343 QVDDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKY 3522
               DIPYD DLE+PG  D I EAW  KC YD QL  LL Q+ V+ EEE+VTGH+WSMPKY
Sbjct: 1016 DPSDIPYDIDLEIPGFEDLIPEAWGHKCSYDRQLIGLLGQYKVQKEEEIVTGHIWSMPKY 1075

Query: 3523 NNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHP 3702
             ++           +YNS+++EF++VF+    D + L+E EKN +YE+KASAWY VTYHP
Sbjct: 1076 TSKKQCDLKERLKHSYNSLKKEFRKVFEETILDHEELSEEEKNILYEKKASAWYHVTYHP 1135

Query: 3703 RWVKKSVELRNSDDKVA-TPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLAD 3879
            +WVKKS+EL++ D+  +   MLSFAW+ A+YL +IKIR  ++ ++D  KP++SLA +LA 
Sbjct: 1136 KWVKKSLELQDPDEPSSHAVMLSFAWIAADYLAKIKIRSGEMGNIDSAKPVDSLAKFLAQ 1195

Query: 3880 KI 3885
            ++
Sbjct: 1196 RL 1197


>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
            gi|482559225|gb|EOA23416.1| hypothetical protein
            CARUB_v10016597mg [Capsella rubella]
          Length = 1197

 Score = 1506 bits (3900), Expect = 0.0
 Identities = 723/1202 (60%), Positives = 916/1202 (76%), Gaps = 3/1202 (0%)
 Frame = +1

Query: 289  LGFERDKKDLIITQVSLGGFDQDVTAKELAKFIEKEIGITWRCRLKKSWTPPESLLNFDI 468
            +G E +  + ++TQVS+GGF +  TAK+L  ++E E+G+ WRCRLK SWTPP S  NF+I
Sbjct: 1    MGSEGNITNSVVTQVSIGGFGESTTAKQLTDYLEDEVGLVWRCRLKNSWTPPGSYPNFEI 60

Query: 469  TNTRDLKLNDDFEKVEPHAFVHFASPDSATSIFDRAGRNQLELNGKILMVNLGPESSFLM 648
             +T ++   DD++KVEPHAFVHFA  +S     D AG+ +L L+G+ L V+LGP++ + +
Sbjct: 61   ADTSNIPRIDDYKKVEPHAFVHFALSESTNHAMDAAGQCKLILDGQPLKVSLGPKNPYTL 120

Query: 649  NTRRMEIDPFTFRGVGVEIGTRVSRDEFLIGWKGPPKGADFFIDPFDGSCKINFTKETAF 828
            N RR    P+   GV +EIGT VSRDEFL+ W+    G +F +DPFD +CK  F+K TAF
Sbjct: 121  NQRRRTTTPYKMTGVSLEIGTLVSRDEFLVSWRAD--GVNFLVDPFDNTCKFCFSKSTAF 178

Query: 829  SFKGTSLHAVLKCDFKTEFFVRDINEVRSYMDQLSWVMELQLVSSPLLYYRTADDDIHAT 1008
            +FK   +HAV+KCD+K E  VRDI   R Y +   +V+ LQL SSP ++YRTADDDI+ T
Sbjct: 179  AFKDAVMHAVIKCDYKLESLVRDIQTFRQYRNSHGFVLLLQLASSPRVWYRTADDDIYET 238

Query: 1009 VPFDLLDDEDPWIRTTDFTSAKVIGRCNSYRIFVPPRQGKKLKEAIEYLKKWRIIPYDCP 1188
            VPFDLLDD+DPWIRTTDFT    IGRC SYR+ + PR  KKL  A++YL+  R+      
Sbjct: 239  VPFDLLDDDDPWIRTTDFTQVGAIGRCLSYRVLISPRYDKKLTTALDYLRMRRVQEERVR 298

Query: 1189 -APKFHEEPDFGSPMPDPFFCFHPKEKISFELLFLVNAAIHKGIFSHFQLSDRFFELLRS 1365
              P+  +EP FG P+ D FFC H +E ISFE++FLVN+ +H+G+F+ FQL++RFF+LLR+
Sbjct: 299  WPPRIRDEPCFGEPVSDHFFCIHHREGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358

Query: 1366 HDREVNVAALTYIYSGKTPVFDPAERLRTVQIRLLKNPKMIKSFKGLGDSAEVRRLIITP 1545
              ++VNVA+L ++ + K PVFD  +RL+ V   +LKNPK++ S +   D +E+RRL+ITP
Sbjct: 359  QPKDVNVASLKHLCTYKRPVFDAYKRLKLVHEWILKNPKLLGSHEKSEDISEIRRLVITP 418

Query: 1546 TKAYCLPPEVELSNRILRKYREFADRFLRVTFMDEGSQQLNSNVLTYYVAPIVRDMTKNS 1725
            T+AYCLPPEVEL NR+LRKY+  A+RFLRVTFMDE  Q +NSNVL+Y+VAPIV+D+T +S
Sbjct: 419  TRAYCLPPEVELPNRVLRKYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478

Query: 1726 FPQKTLVFNRVKTILKDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEGANIKVSDIKSWMG 1905
            F QKT +F RVK IL DGF LCGRKYSFLAFS+NQLRD SAWFFAE    +VSDIK+WMG
Sbjct: 479  FSQKTYIFKRVKNILTDGFMLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKTWMG 538

Query: 1906 KFTDKNVAKCTARMGMCFSSTFATVEVPFEQVNGNLPDIERNGYVFSDGIGKITPDLAKE 2085
            KF DKNVAKC ARMG+CFSST+ATV+V   +V+  LP+IERNGYVFSDGIG ITPDLA E
Sbjct: 539  KFKDKNVAKCAARMGLCFSSTYATVDVMLHEVDTELPEIERNGYVFSDGIGIITPDLADE 598

Query: 2086 VADKLQLTSN-PPCAYQIRFAGCKGVVACWPEKTDEFRLSIRPSMIKFQSKHTVLEIVSW 2262
            V +KL+L  +  PCAYQIR+AG KGVVA WP K D  RL++R SM KF S HT+LEI SW
Sbjct: 599  VMEKLRLDVHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSNHTILEICSW 658

Query: 2263 TRFQPGFLNRQIIILLSALGVPDSVFSLMQATMVHKLCHILENTDIAFDVLTSSCAEQGN 2442
            TRFQPGFLNRQII LLS LGVPD +F  MQ +M+ KL  IL++TD+AF+VLT+SCAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSVLGVPDEIFWAMQESMLCKLNRILDDTDVAFEVLTASCAEQGN 718

Query: 2443 TAAMMLGAGFKPQTEPHLRGMLTAIRAGQFRDLLEKTRIFVPQGRWLMGCFDELGVLEQG 2622
            TAA+ML AGFKP+TEPHLRGML+++R  Q  DL EK+RIFV  GRWLMGC DE G+LE+G
Sbjct: 719  TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWDLREKSRIFVTSGRWLMGCLDEAGILEEG 778

Query: 2623 QCFIQSSIPSLENCFSDQGPGFSGTKMDLQVIKGTVVVAKNPCLHPGDIRILEAVDNPGL 2802
            +CFIQ S PS++NCFS  G  F  TK DLQV+KG V VAKNPCLHPGD+RILEAVD P L
Sbjct: 779  KCFIQVSKPSIKNCFSKHGSRFKETKTDLQVVKGYVAVAKNPCLHPGDVRILEAVDVPQL 838

Query: 2803 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYSPGETQKL 2982
            HH+ DCL+FPQKGDRPH NEASGSDLDGDLYFV WD+ L+PPS++S+  M Y   E + L
Sbjct: 839  HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLVPPSQKSFPAMHYDAAEAKSL 898

Query: 2983 QRAINQSDIVDFFVKNMVNEKLGTICNSHVVHADLSDYGAMDEKCIKLAELAATAVDFPK 3162
             RA+N  DI+DFF +NM NE LGTICN+HVVHAD S+YGAMDE C+ LAELAATAVDFPK
Sbjct: 899  GRAVNHQDIIDFFARNMANESLGTICNAHVVHADRSEYGAMDEDCLLLAELAATAVDFPK 958

Query: 3163 TGKVVAMPQELKPKMYPDFMGKEDFISYKSKKVLGELYRRIKDSPDLVVGDSDKDTLAVF 3342
            TGK+V++P  LKPK+YPDFMGKED+ +YKS K+LG LYRR+K+  D    D++  +    
Sbjct: 959  TGKIVSIPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYD---EDAEASSEENP 1015

Query: 3343 QVDDIPYDTDLEVPGSADFIREAWDRKCLYDGQLNALLEQFNVKSEEEVVTGHVWSMPKY 3522
             + DIPYDTDLE+PG AD I EAW  KC YDGQL  LL Q+ V+ EEE+VTGH+WSMPKY
Sbjct: 1016 DLSDIPYDTDLEIPGFADLIPEAWRHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKY 1075

Query: 3523 NNRXXXXXXXXXXXAYNSVRREFKRVFDNLGEDSQNLTEAEKNTIYEQKASAWYQVTYHP 3702
             ++           +YNS+++EF++VF+    D +NL++ EKN +YE+KASAWY VTYHP
Sbjct: 1076 TSKKQGDLKERLKHSYNSLKKEFRKVFEETIPDHENLSDEEKNILYEKKASAWYHVTYHP 1135

Query: 3703 RWVKKSVELRNSDD-KVATPMLSFAWVPAEYLVRIKIRRRDVKHLDMEKPINSLAGYLAD 3879
            +WV KS+EL++ D+      MLSFAW+ A+YL RIKIR R++ ++D  KP++SLA +LA 
Sbjct: 1136 KWVTKSLELQDPDESSTHAVMLSFAWIAADYLARIKIRSREIGNMDSAKPVDSLAKFLAQ 1195

Query: 3880 KI 3885
            ++
Sbjct: 1196 RL 1197