BLASTX nr result
ID: Papaver27_contig00029367
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00029367
(702 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 89 2e-15
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 89 2e-15
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] 89 2e-15
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 80 5e-13
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 78 3e-12
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 75 2e-11
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu... 75 2e-11
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus... 74 5e-11
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 74 6e-11
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 72 2e-10
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 71 3e-10
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 70 5e-10
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 70 9e-10
ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, par... 67 6e-09
ref|XP_005998542.1| PREDICTED: trinucleotide repeat-containing g... 64 6e-08
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 63 8e-08
ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prun... 62 1e-07
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 61 3e-07
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 60 5e-07
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 60 5e-07
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 88.6 bits (218), Expect = 2e-15
Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 1/169 (0%)
Frame = +3
Query: 174 NAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPKNETVTTNNKSAGTWGTN 353
N K+ + P+ + G + G N E QWNQ KN+ ++S+ WG +
Sbjct: 1600 NVMKEQSNQPASTHG--WDSPGAKGWNDVEEQSQWNQRGSAVKND----QSESSHGWGPS 1653
Query: 354 MAGEHVNQPVDSQVWGSSSVGDQTEKEV*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGD 533
NQ SQ WGS + G E E SQ +P K + + SRGW SN +
Sbjct: 1654 ---NEQNQLPSSQGWGSPNAGAGHESET-QSQWGQPSGK---KSRPEGSRGW--GSNNTE 1704
Query: 534 WKNK-GRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVD 677
WKNK RPN PQG +D ++A GI+TATRQ +D FT+EEQ L +V+
Sbjct: 1705 WKNKKNRPNKPQGPLNDD--YSAGGIFTATRQRVDIFTSEEQDILLDVE 1751
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 88.6 bits (218), Expect = 2e-15
Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 1/169 (0%)
Frame = +3
Query: 174 NAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPKNETVTTNNKSAGTWGTN 353
N K+ + P+ + G + G N E QWNQ KN+ ++S+ WG +
Sbjct: 1540 NVMKEQSNQPASTHG--WDSPGAKGWNDVEEQSQWNQRGSAVKND----QSESSHGWGPS 1593
Query: 354 MAGEHVNQPVDSQVWGSSSVGDQTEKEV*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGD 533
NQ SQ WGS + G E E SQ +P K + + SRGW SN +
Sbjct: 1594 ---NEQNQLPSSQGWGSPNAGAGHESET-QSQWGQPSGK---KSRPEGSRGW--GSNNTE 1644
Query: 534 WKNK-GRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVD 677
WKNK RPN PQG +D ++A GI+TATRQ +D FT+EEQ L +V+
Sbjct: 1645 WKNKKNRPNKPQGPLNDD--YSAGGIFTATRQRVDIFTSEEQDILLDVE 1691
>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 88.6 bits (218), Expect = 2e-15
Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 1/169 (0%)
Frame = +3
Query: 174 NAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPKNETVTTNNKSAGTWGTN 353
N K+ + P+ + G + G N E QWNQ KN+ ++S+ WG +
Sbjct: 732 NVMKEQSNQPASTHG--WDSPGAKGWNDVEEQSQWNQRGSAVKND----QSESSHGWGPS 785
Query: 354 MAGEHVNQPVDSQVWGSSSVGDQTEKEV*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGD 533
NQ SQ WGS + G E E SQ +P K + + SRGW SN +
Sbjct: 786 ---NEQNQLPSSQGWGSPNAGAGHESET-QSQWGQPSGK---KSRPEGSRGW--GSNNTE 836
Query: 534 WKNK-GRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVD 677
WKNK RPN PQG +D ++A GI+TATRQ +D FT+EEQ L +V+
Sbjct: 837 WKNKKNRPNKPQGPLNDD--YSAGGIFTATRQRVDIFTSEEQDILLDVE 883
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 80.5 bits (197), Expect = 5e-13
Identities = 71/253 (28%), Positives = 98/253 (38%), Gaps = 28/253 (11%)
Frame = +3
Query: 3 WNTKKQPSQAEPDDSWGGLVDXXXXXXXXXXXXQSSQAEAHDSWGG--FAEKTNTTGGWN 176
W + K+ + D WG + Q + WG + + +T GW
Sbjct: 1559 WGSTKE--SVKSDRGWGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWG 1616
Query: 177 AQKQPQDDPSDSWGGHMEKA---------NKTGQNGKE-GNGQWNQWSEPPKNETVTTNN 326
K ++ S WG E N G NG E N NQ E+ N
Sbjct: 1617 KPKSSEN--SQGWGLSKESGKEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNK 1674
Query: 327 KSAGTWGTNMAGEHVNQPVDSQVWGS---------------SSVGDQTEKEV*WSQCEEP 461
S+ GT P S+ WGS S G+ + ++ W Q
Sbjct: 1675 ASSNQEGTASGWGKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQS-- 1732
Query: 462 PVKPFARGTNKSSRGWDSSSNTGDWKNK-GRPNNPQGTPDDQSGWNASGIYTATRQ*LDR 638
+ F + + SRGW SN GDWKNK RP+ P NASGI+T TRQ LD
Sbjct: 1733 --REFKKDRFEGSRGW--GSNNGDWKNKRNRPSKPH------EDLNASGIFTTTRQRLDV 1782
Query: 639 FTAEEQSALSEVD 677
FT++EQ LS+++
Sbjct: 1783 FTSQEQDILSDIE 1795
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 77.8 bits (190), Expect = 3e-12
Identities = 63/219 (28%), Positives = 92/219 (42%), Gaps = 28/219 (12%)
Frame = +3
Query: 105 SSQAEAHDSWGGFAEKTNTTGGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQ 284
+++ +A +WG K NTT W ++D GH + A+ +G+ N +
Sbjct: 1509 TAREDAASAWGKHPAKENTTSTWGTTTASENDWCGRGVGHDDSASLSGKKSSVLNTS-SV 1567
Query: 285 WSEPPKNETVTT-------NNKSAGTWGTNMAGEH--------VNQPVDSQV-------- 395
W+ E T+ + TWGT A E+ +PVD Q
Sbjct: 1568 WATNTAREDATSAWGKNPAKENTTSTWGTTTASENDWCGREAGKVEPVDLQPTKPQDDSA 1627
Query: 396 ----WGS-SSVGDQTEKEV*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGDWKNKGRPNN 560
W S + G+ E+ W Q K + + +R W SS G+WKNK RP
Sbjct: 1628 SLSGWDSPTGDGNSGERNHQWGQHRGDQTK---KNRFEGARNWVSSP--GEWKNKNRPPK 1682
Query: 561 PQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVD 677
G +D S A +YT TRQ LD FT+EEQ LS ++
Sbjct: 1683 SPGMVNDNSTMGA--LYTVTRQRLDMFTSEEQDVLSNIE 1719
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 75.1 bits (183), Expect = 2e-11
Identities = 70/222 (31%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Frame = +3
Query: 114 AEAHDSWGGFAEKTN----TTGGWNAQKQPQ--------DDPSDSWGGH-------MEKA 236
A A SWG + N T WN + + ++ S WG E +
Sbjct: 1531 ANATASWGRNGSEENSGWDTKASWNTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDS 1590
Query: 237 NKTGQNGKEGNGQWNQWSEPPKNET---------VTTNNKSA--GTWGTNMAGEHVN-QP 380
+K N K Q W+ P T +T N K +WG E+ + QP
Sbjct: 1591 SKPSANEKSIVHQIGGWNVPDAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTENESSQP 1650
Query: 381 VDSQVWG--SSSVGDQTEKEV*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGDWKNK-GR 551
S W ++ G +TE +V W Q + P K +RGW SSS G+WK K R
Sbjct: 1651 ASSNAWDLPDATGGSETEMQV-WGQSRKEPFK--------KNRGWASSS--GEWKGKKNR 1699
Query: 552 PNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVD 677
P G +D S NA +YT TRQ LD FT+EEQ LS+V+
Sbjct: 1700 PPRSPGVVNDDSTVNA--MYTVTRQRLDMFTSEEQDILSDVE 1739
>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
gi|550346662|gb|EEE84012.2| hypothetical protein
POPTR_0001s06460g [Populus trichocarpa]
Length = 888
Score = 75.1 bits (183), Expect = 2e-11
Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 21/246 (8%)
Frame = +3
Query: 3 WNTKKQPSQAEPDDSWG---------GLVDXXXXXXXXXXXXQSSQAEAH---DSWGGFA 146
W+ K +QA+ WG G+ + +Q++ +S G A
Sbjct: 595 WSNKVNSNQADTASGWGKSKSLDRGWGVSNSGGGNGNEMNNKTENQSQLEGGKESGGWGA 654
Query: 147 EKTNTTGGW-NAQKQPQDDPSDSWGGHMEKANKTGQN-GKEGNGQWNQWSEPPKNETVTT 320
+ T+ W N Q D + WG K+ G G G ++ + +N+++
Sbjct: 655 KNTDADKPWGNKVNSNQADTASCWG--KPKSPDLGWGVSNSGGGNGSEMEDKTENQSLLD 712
Query: 321 NNKSAGTWGTNMA-----GEHVNQPVDSQVWG--SSSVGDQTEKEV*WSQCEEPPVKPFA 479
K +G WG + G + WG +S+ + +E++ W Q F
Sbjct: 713 RGKESGGWGKPKSISQGWGSSKDSVKAVDGWGVPNSAGSNGSERDQQWGQQSGE----FK 768
Query: 480 RGTNKSSRGWDSSSNTGDWKNKGRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQS 659
+ + SRGW SN G WK + RP+ P +D S +SG++T TRQ LD FT++EQ
Sbjct: 769 KNRTEGSRGW--GSNNGHWKKRNRPSKPH---EDSS---SSGLFTMTRQWLDIFTSQEQD 820
Query: 660 ALSEVD 677
LS+V+
Sbjct: 821 ILSDVE 826
>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
Length = 2113
Score = 73.9 bits (180), Expect = 5e-11
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 17/209 (8%)
Frame = +3
Query: 102 QSSQAEAHDSWGGF--------AEKTNTTGGWNAQKQPQDDPSDSWGGHMEKANKTGQNG 257
++SQ + +WGG + K+ G W++ Q + S + + Q
Sbjct: 1733 KTSQTQNKSTWGGDTAPIENVPSPKSQEDGLWSSASAAQKEQDGSKDNNPWQTKVAEQAN 1792
Query: 258 KEGNGQW---NQWSEPPKNETVTTNNKSAGTWGTNMAGEHVNQPVDSQVWGSSSVGDQTE 428
E W + W +P N K+ W ++ + +N DSQ WGSS V +
Sbjct: 1793 SEPLSTWGSSSDWVKPDSQTPTGDNTKNESPWSSSQ--KLLNDSTDSQGWGSSKVDTAND 1850
Query: 429 KEV*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGDWKNKGR-PNNPQGTPDDQSGW---- 593
+ E P RG + RGW G ++GR P N + + +SG
Sbjct: 1851 ND-------EQPQWGRGRGRGRG-RGWGRGVGRGREGSQGRGPTNDRDWKNKRSGGPVDD 1902
Query: 594 -NASGIYTATRQ*LDRFTAEEQSALSEVD 677
NA GI+TA+RQ LD FTAEEQ L E +
Sbjct: 1903 PNAPGIFTASRQRLDSFTAEEQEVLLETE 1931
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 73.6 bits (179), Expect = 6e-11
Identities = 66/235 (28%), Positives = 95/235 (40%), Gaps = 56/235 (23%)
Frame = +3
Query: 144 AEKTNTTGGWNAQKQPQDDPSDSWGGHMEKANKTGQNGK-------------EGNGQWN- 281
A + +GGW+ K D S SWG E + N + EG W+
Sbjct: 1539 ANNSTNSGGWSTGKALVDGVSSSWGSQKEDRPQPKSNDRSVGDGNFDKDAKEEGLSSWDA 1598
Query: 282 ---------QWSEPPKNETVTTNNKSAGTWGTNMAGEHVNQPVDSQVWGS--SSVGDQTE 428
W +P +E+ + SA WG++ + NQP S WGS ++ G +E
Sbjct: 1599 KKVERKTQSSWGQP--SESKNSAQSSADHWGSDKS----NQPGKSSGWGSEDTNAGKDSE 1652
Query: 429 KEV*WSQC-------------------EEPPVKPFARGTNKSS----RGWDSSSNTGDWK 539
K+ W + + P +P G NK RGW SSNTG+WK
Sbjct: 1653 KQDSWGKSNVSTWKKESGEKLHGSDDSQSPWGQPGGSGWNKKQPEGGRGW-GSSNTGEWK 1711
Query: 540 NKGRPNNPQGT--------PDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVDA 680
++ N Q P+D S A TATR+ +D F EE+ LSEV++
Sbjct: 1712 SRKNQNQNQNQNQNRPPRGPNDDSPRVA---LTATRKRMDEFPTEEKDVLSEVES 1763
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 72.0 bits (175), Expect = 2e-10
Identities = 63/189 (33%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Frame = +3
Query: 156 NTTGGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPKNET-------- 311
N++ W A+ +D + W E ++K N K Q W+ P T
Sbjct: 1569 NSSSVWGAR---EDFSTKGW----EDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQ 1621
Query: 312 -VTTNNKSA--GTWGTNMAGEHVN-QPVDSQVWG--SSSVGDQTEKEV*WSQCEEPPVKP 473
+T N K +WG E+ + QP S W ++ G +TE +V W Q + P K
Sbjct: 1622 KLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQV-WGQSRKEPFK- 1679
Query: 474 FARGTNKSSRGWDSSSNTGDWKNK-GRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAE 650
+RGW SSS G+WK K RP G +D S NA +YT TRQ LD FT+E
Sbjct: 1680 -------KNRGWASSS--GEWKGKKNRPPRSPGVVNDDSTVNA--MYTVTRQRLDMFTSE 1728
Query: 651 EQSALSEVD 677
EQ LS V+
Sbjct: 1729 EQDILSHVE 1737
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 71.2 bits (173), Expect = 3e-10
Identities = 58/199 (29%), Positives = 78/199 (39%), Gaps = 7/199 (3%)
Frame = +3
Query: 102 QSSQAE-AHDSWGGFAEKTNTTGGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKE----- 263
Q AE +H +WG + G W +K + SWG G G++
Sbjct: 1686 QPKSAEMSHGAWGQQKSPDVSQGVWGLEKPASTNSQGSWGQQKSPEIPQGNWGQQTSPDI 1745
Query: 264 GNGQWNQWSEPPKNETVTTNNKSAGTWGTNMAGEHVNQPVDSQVWGSSSVGDQTEKEV*W 443
G W Q P S G+WG + +QP W S S E+ W
Sbjct: 1746 SQGTWGQQKSP---------EMSQGSWGQQKPSD-TSQPATVNQWDSQSEA-AVERHQQW 1794
Query: 444 SQCEEPPVKPFARGTNKSSRGWDSSSNTGDWKNKG-RPNNPQGTPDDQSGWNASGIYTAT 620
+ + G R W N G+WK K RP G +D S + + IYTAT
Sbjct: 1795 GHNGDSNKRKRFEG----GRSW--GPNAGEWKGKNSRPAKSPGMVNDDS--SVAAIYTAT 1846
Query: 621 RQ*LDRFTAEEQSALSEVD 677
RQ LD FT+EEQ LS ++
Sbjct: 1847 RQRLDIFTSEEQDVLSHIE 1865
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 70.5 bits (171), Expect = 5e-10
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 23/248 (9%)
Frame = +3
Query: 3 WNTKKQP--SQAEPDDSWG-----GLVDXXXXXXXXXXXXQSSQAEAHD-SWGGFAEKTN 158
W+ +K P SQ +D+WG ++ SQ E+++ S GF + TN
Sbjct: 1651 WDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTN 1710
Query: 159 T-----TGGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPK------- 302
T GW++Q++ D P D +K+ + Q+ N W +P +
Sbjct: 1711 EQKSSDTRGWDSQEKT-DKPWDK-----QKSLEASQSWGSQNDSLGSWGQPQRASEECSR 1764
Query: 303 --NETVTTNNKSAGTWGTNMAGEHVNQPVDSQVWGSSSVGDQTEKEV*WSQCEEPPVKPF 476
+ +T T++ E P S WGS+ + W +
Sbjct: 1765 ESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSNKESSEQTSSHGWDK--------- 1815
Query: 477 ARGTNKSSRGWDSSSNTGDWKN-KGRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEE 653
N+ S+GW N G+WKN K RP G +D + N +YTA+ Q LD FT+EE
Sbjct: 1816 ---KNQGSKGW--GGNAGEWKNRKNRPPKSPGMSNDDA--NLRALYTASGQRLDMFTSEE 1868
Query: 654 QSALSEVD 677
Q L++++
Sbjct: 1869 QDILADIE 1876
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 69.7 bits (169), Expect = 9e-10
Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 23/248 (9%)
Frame = +3
Query: 3 WNTKKQP--SQAEPDDSWG-----GLVDXXXXXXXXXXXXQSSQAEAHD-SWGGFAEKTN 158
W+ +K P SQ +D+WG ++ SQ E+++ S GF + TN
Sbjct: 1591 WDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTN 1650
Query: 159 T-----TGGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPK------- 302
T GW++Q++ D P D +K+ + Q+ N W +P +
Sbjct: 1651 EQKSSDTRGWDSQEKT-DKPWDK-----QKSLEASQSWGSQNDSLGSWGQPQRASEECSR 1704
Query: 303 --NETVTTNNKSAGTWGTNMAGEHVNQPVDSQVWGSSSVGDQTEKEV*WSQCEEPPVKPF 476
+ +T T++ E P S WGS + W +
Sbjct: 1705 ESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSHKESSEQTSSHGWDK--------- 1755
Query: 477 ARGTNKSSRGWDSSSNTGDWKN-KGRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEE 653
N+ S+GW N G+WKN K RP G +D + N +YTA+ Q LD FT+EE
Sbjct: 1756 ---KNQGSKGW--GGNAGEWKNRKNRPPKSPGMSNDDA--NLRALYTASGQRLDMFTSEE 1808
Query: 654 QSALSEVD 677
Q L++++
Sbjct: 1809 QDILADIE 1816
>ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, partial [Populus
trichocarpa] gi|550305984|gb|ERP46156.1| hypothetical
protein POPTR_1437s002101g, partial [Populus
trichocarpa]
Length = 142
Score = 67.0 bits (162), Expect = 6e-09
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Frame = +3
Query: 300 KNETVTTNNKSAGTWGTNMAGEHVNQPVDSQVWGSS--------------SVGDQ-TEKE 434
+N+ + K +G WG + P SQ WGSS S G +E++
Sbjct: 6 ENQALLDRGKESGGWGKPKS------PEISQGWGSSKDSVKAVDGWGVPNSAGSNGSERD 59
Query: 435 V*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGDWKNKGRPNNPQGTPDDQSGWNASGIYT 614
W Q F + + SRGW SN GDWK + RP+ P +D S +SG++T
Sbjct: 60 QQWGQQSGE----FKKNRTEGSRGW--GSNNGDWKKRNRPSKPH---EDSS---SSGLFT 107
Query: 615 ATRQ*LDRFTAEEQSALSEVD 677
TRQ LD FT++EQ LS+V+
Sbjct: 108 TTRQRLDIFTSQEQDILSDVE 128
>ref|XP_005998542.1| PREDICTED: trinucleotide repeat-containing gene 6A protein [Latimeria
chalumnae]
Length = 1948
Score = 63.5 bits (153), Expect = 6e-08
Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 21/200 (10%)
Frame = +3
Query: 33 EPDDSWGGLVDXXXXXXXXXXXXQSSQAEAHDSWGGFAEKTNTTGGWN-AQKQPQ----- 194
+P WG + +++ SWG E+ ++T WN AQK Q
Sbjct: 784 KPATGWGDTKGSNSQGGWDDDSAATGMVKSNQSWGSSKEEKSST--WNDAQKVKQGWTNE 841
Query: 195 DDPSDSWG-------GHMEKANKTGQNGKEGNGQWNQ--------WSEPPKNETVTTNNK 329
P+ WG G K N G+ K +G W+ WSEP ++ T T N
Sbjct: 842 QKPNQGWGISGNENWGDNSKNNLWGEPKKSSSGGWDSDSDRSASGWSEPGRSSTSTWGNG 901
Query: 330 SAGTWGTNMAGEHVNQPVDSQVWGSSSVGDQTEKEV*WSQCEEPPVKPFARGTNKSSRGW 509
S ++P SQ WG +S +Q + W++ +P +S W
Sbjct: 902 SNTNPSNTTGWGEPSKPNQSQGWGETSKPNQPQT---WAESSKP----------SNSPDW 948
Query: 510 DSSSNTGDWKNKGRPNNPQG 569
+ S + G W+ N P G
Sbjct: 949 NKSQDVGSWETPSATNKPSG 968
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 63.2 bits (152), Expect = 8e-08
Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 4/184 (2%)
Frame = +3
Query: 138 GFAEKTNTTGGWNAQKQPQDDPSDS--WGGHMEKANKTGQNGKEGNGQWNQWSEPPKNET 311
G E N + W+A + D+P ++ G E++ GK+ W EP + +
Sbjct: 1345 GAEEGVNQSDSWSAWGKKVDEPENNRQQSGSGEQSGSWSSWGKKVEKDGGSWDEPKQLNS 1404
Query: 312 VTTNNKSAGTWGTNMAGEHVNQPVDSQV--WGSSSVGDQTEKEV*WSQCEEPPVKPFARG 485
++ K+ G A N+ +D V W SS D + ++ ++ F R
Sbjct: 1405 ESSWGKAPNGGGLGSATAEGNKRLDQSVNDWSSSVSRDGQKXTNTXXLYKKWWLEFFKRW 1464
Query: 486 TNKSSRGWDSSSNTGDWKNKGRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSAL 665
+ S GW WKN N P + DD N G +TATRQ +D FTAEEQ +
Sbjct: 1465 WLELSEGWQ-------WKN----NRPARSADDS---NRGGHFTATRQKIDLFTAEEQEII 1510
Query: 666 SEVD 677
S+VD
Sbjct: 1511 SDVD 1514
>ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica]
gi|462416248|gb|EMJ20985.1| hypothetical protein
PRUPE_ppa024567mg [Prunus persica]
Length = 792
Score = 62.4 bits (150), Expect = 1e-07
Identities = 62/224 (27%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Frame = +3
Query: 105 SSQAEAHDSWGGFAEKTNTTGGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQ--W 278
+++ +A + G K N T W ++D GH + A+ +G+ N W
Sbjct: 477 TAREDAASACGKQPAKENATSTWGTTLASENDWCGRGVGHDDSASLSGKKSSVLNTSSVW 536
Query: 279 ----------NQWSEPPKNETVTTNNKSAGTWGTNMAGEH--------VNQPVDSQV--- 395
+ W E P E T+ TWGT A E+ +PVD Q
Sbjct: 537 ATNTAREDATSAWGENPAKENTTS------TWGTTTASENDWCGREAGKVEPVDFQPTKP 590
Query: 396 ---------WGS-SSVGDQTEKEV*WSQCEEPPVKPFARGTNKSSRGWDSSSNTGDWKNK 545
W S + G+ E+ W Q K + + +R W SS G+WKNK
Sbjct: 591 QDDSASLSGWDSPTGDGNSGERNHQWGQHRGDQTK---KSRFEGARNWVSSP--GEWKNK 645
Query: 546 GRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVD 677
RP G +D S A +YT TR LD FT+EE LS ++
Sbjct: 646 NRPPKSPGMVNDNSTMGA--LYTVTRPRLDMFTSEEH-VLSNIE 686
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 61.2 bits (147), Expect = 3e-07
Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 17/240 (7%)
Frame = +3
Query: 9 TKKQPSQAEPDDSWGGLVDXXXXXXXXXXXXQSSQAEAHDSWGGFAEKTNTT-------- 164
+K +P +WG + S+ E+ + G +K N+
Sbjct: 1532 SKNKPETESGPSTWGA------------WDTKKSETESGPAGWGIVDKKNSETESGPAAM 1579
Query: 165 GGWNAQKQPQDDPSDSWGGHMEKA-NKTGQNGKEGNGQWNQWSEPPKNETVTTNNKSA-G 338
G W+ +K + +WG + +N E W K + T + +A G
Sbjct: 1580 GNWDKKKSNTESGPAAWGSTDAAVWGFSDKNNSETESDAAAWGSRDKKTSETESGAAAWG 1639
Query: 339 TWGT---NMAGEHVNQPVDSQVWGS---SSVGDQTEKE-V*WSQCEEPPVKPFARGTNKS 497
+WG A E N+ D W S + D+ +KE + W P K F S
Sbjct: 1640 SWGQPTPTAANEDANED-DENPWVSLKETKSRDKDDKERIQWGN----PAKKFP-----S 1689
Query: 498 SRGWDSSSNTGDWKNKGRPNNPQGTPDDQSGWNASGIYTATRQ*LDRFTAEEQSALSEVD 677
S GW S+ DWK G+ N+ P + N + ++TATRQ LD FT+EEQ LS+V+
Sbjct: 1690 SGGW-SNGGGADWK--GKRNHTPRPPRSED--NLAPMFTATRQRLDSFTSEEQELLSDVE 1744
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 60.5 bits (145), Expect = 5e-07
Identities = 59/265 (22%), Positives = 97/265 (36%), Gaps = 40/265 (15%)
Frame = +3
Query: 3 WNTKKQPSQAEPDDSWGGLVDXXXXXXXXXXXXQSSQAEAHD---SWGGFAEKTNTT--- 164
WN K+ S+ E + + G D E +WG +K + T
Sbjct: 1484 WN--KKSSETESNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESG 1541
Query: 165 ----GGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPKNETVTTNNKS 332
G W+ +K+ + +P + G +K N + G G W++ K+ +
Sbjct: 1542 PAAWGAWD-KKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTD 1600
Query: 333 AGTWGTNMAGEHVNQPVDSQVWGSSS--VGDQTEKEV*WSQCEEPPVKPFARGTNKSSRG 506
A WG++ + D+ WGS + + W +P + TN+ R
Sbjct: 1601 AAAWGSSDKNNSETES-DAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRN 1659
Query: 507 -W----DSSSNTGDWKNKGRPNNPQGTPDDQSGWNASG---------------------- 605
W ++ S D K + + NP GW+ G
Sbjct: 1660 PWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLA 1719
Query: 606 -IYTATRQ*LDRFTAEEQSALSEVD 677
++TATRQ LD FT+EEQ LS+V+
Sbjct: 1720 PMFTATRQRLDSFTSEEQELLSDVE 1744
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 60.5 bits (145), Expect = 5e-07
Identities = 59/265 (22%), Positives = 97/265 (36%), Gaps = 40/265 (15%)
Frame = +3
Query: 3 WNTKKQPSQAEPDDSWGGLVDXXXXXXXXXXXXQSSQAEAHD---SWGGFAEKTNTT--- 164
WN K+ S+ E + + G D E +WG +K + T
Sbjct: 1484 WN--KKSSETESNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESG 1541
Query: 165 ----GGWNAQKQPQDDPSDSWGGHMEKANKTGQNGKEGNGQWNQWSEPPKNETVTTNNKS 332
G W+ +K+ + +P + G +K N + G G W++ K+ +
Sbjct: 1542 PAAWGAWD-KKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTD 1600
Query: 333 AGTWGTNMAGEHVNQPVDSQVWGSSS--VGDQTEKEV*WSQCEEPPVKPFARGTNKSSRG 506
A WG++ + D+ WGS + + W +P + TN+ R
Sbjct: 1601 AAAWGSSDKNNSETES-DAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRN 1659
Query: 507 -W----DSSSNTGDWKNKGRPNNPQGTPDDQSGWNASG---------------------- 605
W ++ S D K + + NP GW+ G
Sbjct: 1660 PWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLA 1719
Query: 606 -IYTATRQ*LDRFTAEEQSALSEVD 677
++TATRQ LD FT+EEQ LS+V+
Sbjct: 1720 PMFTATRQRLDSFTSEEQELLSDVE 1744